sp|Q9FQ03|XRN3_ARATH ----> 5'-3' exoribonuclease 3
Intron 1 GTTTGCTAGA ... AATTGAGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 25.52 | 89 | 32 | 29 |
| A2 | 25.93 | 40 | 17 | 11 |
| A3 | 30.51 | 41 | 19 | 17 |
| A4 | 31.51 | 25 | 12 | 11 |
| A5 | 20 | 26 | 4 | 9 |
| A6 | 52.38 | 10 | 19 | 3 |
| A7 | 18.75 | 39 | 8 | 10 |
| A8 | 34.55 | 18 | 11 | 8 |
| A9 | 20 | 50 | 11 | 14 |
| A10 | 24.73 | 35 | 15 | 8 |
>TRINITY_DN129087_c1_g2_i10 from sample A1 / Example spliced isoformCTACACCAAACAAAACCATCATATTGTCTTTTGATTTCGAGGCCGGGGAGCATGGAACCCTCACTCTTACATGGCTCGGAAGTTACCCATATTGTCTTTTGATTTCGAGGCCGGGGAGCATGGAACCCTCACTCTTACATGTCTTGGAAGTTACCGCTTAACATCATATATATATATATATGAGAAGTATAAAACTGGTT
GGCACGTCAACCCATTATTGGAGCCACCACTTTTGAAGGCGATTAAATCAGCGAAGGCGCGGTGGGGTGGACATAGGTTTGGATCTTCCCATATATGTAATAATAATAATAATTATTTGCACCGTCCATGGGGTTCCGGTTTGACCCTTTTGTTCCCAGTCGCCTTCACTATAAAATTCCCTTTCGAAACTCAAAATTCA
GCACAGAAACCGGGAGAAGAATGGACATGGACATGATTTGAGGGAAGGGGTTTATAAGTGAATATAGAAAGAGCAGAGCAAAGAGGGAAGAGGGCACGGGCGCTGCCACTGGCACTGGATCTGGAAGAGAATGGGTGTCCCGGCATTTTATAGATGGTTATCTGACAGGTACCCCATGGTTGTGGTGGATGTCGTAGAAG
AGGAAGCTACTGTGGATGCCACCCAACCCAACCCCAATGGGATCGAGTTTGACAACCTTTATTTGGACATGAATGGAATTATTCATCCATGCTTTCATCCAGAGGACAGGCCTGCGCCGTCAACATATGACGAAGTTTTTAAGAACATGTTTGACTACATAGACCGCCTCTTTTTAATAGTGAGGCCAAGGAAGCTTTTG
TACATGGCAATTGGTAAGTGAGTTAATAACCTCAAGTGCTGCACCTTTACTATTTGACATGAAATATTTATATTCACATCTTTTGGTAAACTTTACTAGGTATGGCATTCAAAACCTATATTCATGCCTTTTTTAAAAGGGGGAGTCATGTTTTATTGCTTAATATTTATGTTTCTTTAGCACAACTTGGTAAATGCTGA
TTATGATTGTACAATGACCAAAGATTACTCTGTCTCCATTTGAAGACTGAAAATTGTTAAGATTGAGCACCGACTTTCTGTAATTGTAGATGGTGTTGCACCAAGGGCTAAGATGAATCAACAACGTTCACGGCGTTTTCGGGCTGCAAAAGATGCAGCTGAAGCAGCCACGGAAGAAGAAAAATTGAGAAAAGAGTTTG
TGGCAGAAGGTAAATATATGGTCTTAAAAGAGAAATCAGAAGTCCATGATTCAAATGTCATTACCCCCGGGACAGAATTTATGGCCACACTGTCTGTTGCTCTGCAGTACTATGTACATTTGAGATTGAACAACGACCTGGGATGGCAGAAAATAAAGGTTATACTTTCTGATGCAAATGTTCCTGGTGAGGGGGAACAC
AAAGTTATGTCCTACATTCGTCTCCAAAGAAACCTCCCTGGTTTCAATCCAAATACCAGGCACTGCTTGTATGGTTTAGATGCAGATTTAATTATGTTGGCATTGGCAACTCATGAAATCCACTTCTCAATTTTAAGAGAGGTCATCACTTTCCCTGGTCAGCAAGAAAAATGCTTCCTTTGTGGCCAGGTGGGTCATTT
GGCAGCTGATTGTGAAGGAATTCCAGTTCCAAAACCAGGAGAATTGGATGAGGAGGGCAATGAACAGAGTCCTGTTCCTAGAAAACCTTATCAGTTTCTCAACATATGGACCTTGCGAGAGTACTTGGAGTATGACATGAAGATACCAAATCCTCCATTTGAGGTGGACTTTGAACGGCTTGTGGATGATTTCGTCTTTA
TGTGTTTTTTTGTGGGGAATGATTTCCTTCCACACATGCCTACATTGGAAATTCGTGAGGGTGCAATCAACTTGCTGATGGTTGTATACAAAAAGGAGTTTGGTGAAATGGGTGGTTATATGACAGATGCGGGTGAGGTAAATTTGATGAGGGTGGAGCATTTTATTCAGGCTGTTGGAACATACGAGGATAAGATTTTT
CAAAAGCGAGCTCATATTCATCAGATTCAGACAGAGAGACGCAAGCGCTCAAAGACGAAGTCAAGGAATGAAGAAAGTCGTGAACCCAATGTTCAGCCTGAATCTATAGTTCCAGTGATTCCATTTAAGGGTGCACGTCTGGCATGTGCCCCTCATCCATCTCCATATGAATCAGATTCATCTAAACTACCTGCAAAGCT
CAGGAGAGTTAGTGAAAATAATGCCAGTATTGCTGCAGCATTAGTGAAGGTTGAAGATGAACTAACTGCTGAAGCTGCAAAGGCGAAAGAAAATGCAGAGGAGCTGAAACTTATGGTGAAAAATGCACTTCGTGAGAAGTCAGATCTTTTCAATTCTGAAGAACCTGAAAAGGACAAGGTTAAATTAGGAGAGTCTGGAT
GGAAAGAAAGATACTATTCTGAAAAATTTGAGGCACATACAGAAGAAGCTCGAGAACAAACCAAAAAGGATGCTGTCTTGAAATATACAGAAGGACTTTGTTGGATAATGCACTATTATTATCAAGGAGTGTGCTCATGGCAGTGGTATTATCCATACCATTATGCTCCCTTTGCCTCTGATCTTACGGGTCTCAGTCAG
TTAAAGATTGCATTTAATCTTGGGAGTCCATTCAAGCCATTCAATCAGCTAATGGGAGTTCTTCCTGCTGCGAG
>TRINITY_DN129087_c1_g2_i13 from sample A1 / Example unspliced isoform:CTACACCAAACAAAACCATCATATTGTCTTTTGATTTCGAGGCCGGGGAGCATGGAACCCTCACTCTTACATGGCTCGGAAGTTACCCATATTGTCTTTTGATTTCGAGGCCGGGGAGCATGGAACCCTCACTCTTACATGTCTTGGAAGTTACCGCTTAACATCATATATATATATATATGAGAAGTATAAAACTGGTT
GGCACGTCAACCCATTATTGGAGCCACCACTTTTGAAGGCGATTAAATCAGCGAAGGCGCGGTGGGGTGGACATAGGTTTGGATCTTCCCATATATGTAATAATAATAATAATTATTTGCACCGTCCATGGGGTTCCGGTTTGACCCTTTTGTTCCCAGTCGCCTTCACTATAAAATTCCCTTTCGAAACTCAAAATTCA
GCACAGAAACCGGGAGAAGAATGGACATGGACATGATTTGAGGGAAGGGGTTTATAAGTGAATATAGAAAGAGCAGAGCAAAGAGGGAAGAGGGCACGGGCGCTGCCACTGGCACTGGATCTGGAAGAGAATGGGTGTCCCGGCATTTTATAGATGGTTATCTGACAGGTACCCCATGGTTGTGGTGGATGTCGTAGAAG
AGGAAGCTACTGTGGATGCCACCCAACCCAACCCCAATGGGATCGAGTTTGACAACCTTTATTTGGACATGAATGGAATTATTCATCCATGCTTTCATCCAGAGGACAGGCCTGCGCCGTCAACATATGACGAAGTTTTTAAGAACATGTTTGACTACATAGACCGCCTCTTTTTAATAGTGAGGCCAAGGAAGCTTTTG
TACATGGCAATTGATGGTGTTGCACCAAGGGCTAAGATGAATCAACAACGTTCACGGCGTTTTCGGGCTGCAAAAGATGCAGCTGAAGCAGCCACGGAAGAAGAAAAATTGAGAAAAGAGTTTGTGGCAGAAGGTAAATATATGGTCTTAAAAGAGAAATCAGAAGTCCATGATTCAAATGTCATTACCCCCGGGACAGA
ATTTATGGCCACACTGTCTGTTGCTCTGCAGTACTATGTACATTTGAGATTGAACAACGACCTGGGATGGCAGAAAATAAAGGTTATACTTTCTGATGCAAATGTTCCTGGTGAGGGGGAACACAAAGTTATGTCCTACATTCGTCTCCAAAGAAACCTCCCTGGTTTCAATCCAAATACCAGGCACTGCTTGTATGGTT
TAGATGCAGATTTAATTATGTTGGCATTGGCAACTCATGAAATCCACTTCTCAATTTTAAGAGAGGTCATCACTTTCCCTGGTCAGCAAGAAAAATGCTTCCTTTGTGGCCAGGTGGGTCATTTGGCAGCTGATTGTGAAGGAATTCCAGTTCCAAAACCAGGAGAATTGGATGAGGAGGGCAATGAACAGAGTCCTGTT
CCTAGAAAACCTTATCAGgtttgctagaaaaattgaaacttagaattgctgtatttgctttatattttgaacgggagacattctttcacccataggttagggattacattagaatatgtttactgccatatgccattatgctaataattgagcagTTTCTCAACATATGGACCTTGCGAGAGTACTTGGAGTATGACATG
AAGATACCAAATCCTCCATTTGAGGTGGACTTTGAACGGCTTGTGGATGATTTCGTCTTTATGTGTTTTTTTGTGGGGAATGATTTCCTTCCACACATGCCTACATTGGAAATTCGTGAGGGTGCAATCAATTTGCTCATGGCTATATACAAGAAAGAATTCAGTGCAATGGGTGGCTATTTGACAGATGCAGGCGAGGT
AATATTGGACAGGGTGGAGCATTTTATTCAGGCTGTTGGAACATACGAGGATAAGATTTTTCAAAAGCGAGCTCATATTCATCAGATTCAGACAGAGAGACGCAAGCGCTCAAAGACGAAGTCAAGGAATGAAGAAAGTCGTGAACCCAATGTTCAGCCTGAATCTATAGTTCCAGTGATTCCATTTAAGGGTGCACGTC
TGGCATGTGCCCCTCATCCATCTCCATATGAATCAGATTCATCTAAACTACCTGCAAAGCTCAGGAGAGTTAGTGAAAATAATGCCAGTATTGCTGCAGCATTAGTGAAGGTTGAAGATGAACTAACTGCTGAAGCTGCAAAGGCGAAAGAAAATGCAGAGGAGCTGAAACTTATGGTGAAAAATGCACTTCGTGAGAAG
TCAGATCTTTTCAATTCTGAAGAACCTGAAAAGGACAAGGTTAAATTAGGAGAGTCTGGATGGAAAGAAAGATACTATTCTGAAAAATTTGAGGCACATACAGAAGAAGCTCGAGAACAAACCAAAAAGGATGCTGTCTTGAAATATACAGAAGGACTTTGTTGGATAATGCACTATTATTATCAAGGAGTGTGCTCATG
GCAGTGGTATTATCCATACCATTATGCTCCCTTTGCCTCTGATCTTACGGGTCTCAGTCAGTTAAAGATTGCATTTAATCTTGGGAGTCCATTCAAGCCATTCAATCAGCTAATGGGAGTTCTTCCTGCTGCGAGTGCAAATGCTCTTCCTGAGCATTACAGGCCATTAATGACTGATCCCAATTCACCTATCATTGACT
TATATCCCACTGATTTTGAAATTGATATGAATGGCAAGCGATATGCCTGGCAGGGTGTTGCTAAGTTACCATTCATTGATGAAGCTCGCCTTCTTGCAGAAATTAGCAAGGTTGAAGGCACATTAACGGAAGAAGAAAGATTGAGAAATAGTGAAAAGTTTGACTTGCTTTTTGTGATTGCAAGTCATTGCTTAGCTCCA
GATACATTTTCTCTCTATAAGCAGTATGCACATCTTACAGTAAATGAGAGAGCTAAAGTCAAAGAAAAGATCAATCCTGATTCCAGTGGTGGATTAAATGGTTACTTCTGTCTCTGTGATGGGGAGGCTTGCCCACCTGTTTTCACTTCACCTGTTAAGGAGATGGAAAACATCATAAACAATCAAGTTCTGTCTGTAAT
TTACAAGTGCCCGTCTGTGCATAAACACATTCCAAGGCTCGTGGATGGGGTCATGATGCCAAAGAAGATTGTATCTGCGCAGGATGTAAGGACAGAAGCTTTATGGCATGAAGATACTGGTCGTAGGCACCAAAATCAAGATAGGCCACCTGTTCACGGAGCTATCTCAGGCCCTCAGCTTGGAGCAGCTGCTCATCGTC
TTGTCATCAACAGTCTGCAGTTAAAGAGCAATAGTTCAGGACGAACTAGTCATATGGTGCAGCAACCGGTGCAGGGGATGTCTTCTTCTTTCCAAAGTAGTAAAAATCATATGAGCCCAAAACCAAGACCAGCTGGCCCTCAAGGTTATGAAAAAGGTTTTGATTTGTCTGTGGGGAAGGTTTCTAATGGTGGAATGTAT
AAATCACAACAAGATGCAGGGTCTGCTGCATTAGTGGATGACCATATTAGTTCCCAGTCAACTCCAAATAAAAAAGCCAATAAGAAAGGGGAACATGGTAGAAGAGATAACTCACAGCAGCAGCGCAATGGTGAGATGCACAGTAGTGACTATGTTAGTTCCCAGTCAACTCCAATTCAGAAAGCCAATAAGAAAAGGGG
ACGTGGTAGAAGAGATTACTCACAGCAGCAGCGCAATGGTGAGATTCACGGTAATGATCACCAACAGCA
Intron 2 GTGAGTGTGT ... CAATTGTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 32.24 | 532.5 | 2 | 253 |
| A2 | 32.77 | 392.8 | 1 | 191 |
| A3 | 32.13 | 524.3 | 1 | 247 |
| A4 | 34.24 | 485.3 | 0 | 252 |
| A5 | 29.66 | 190.3 | 0 | 80 |
| A6 | 24.62 | 31.3 | 0 | 10 |
| A7 | 27.49 | 328.5 | 0 | 124 |
| A8 | 36.11 | 90.5 | 0 | 51 |
| A9 | 32.21 | 245 | 0 | 116 |
| A10 | 30.87 | 341.3 | 0 | 152 |
>TRINITY_DN129087_c1_g2_i8 from sample A1 / Example spliced isoformTTTTATAACATACCTTGCTTAGTAATATCAGATAGGTTTTAATTGTTTGATTCCTTCTTTTAATCTTTTCTGTTCCTATCTGGAATTTTATTGGTAGTGTAGAGATTCTTATTCAAATTTCACCTGTTATAGATGGTGTTGCACCAAGAGCTAAGATGAACCAGCAGCGTTCACGACGTTTCAGGGCAGCAAAAGAGGCA
GATGATTTGGCAGCCGAAGAGGAAAGATTAAGAAAACAGTTTGAGGAAGAAGGTAGGATTTTAGCTCCTAAAGTGAAGTCTGAAGCATGCGACTCAAATATAATTACTCCTGGGACAGAATTTATGGCGACACTGTCAATTGCTCTTCAATATTACATACACATGAGATTAAACTATGATCCAGGCTGGCGAAATATTAA
GGT
>TRINITY_DN129087_c1_g2_i11 from sample A1 / Example unspliced isoform:AGCAAAAGAGGCAGATGATTTGgtgagtgtgttaggaaaaatggtaataatattcaaaagagaagatgtttataagcacatctaaacaaactttcaagccgagaatgaggtttaatgttttttcatgcaattgtcagGCAGCCGAAGAGGAAAGATTAAGAAAACAGTTTGAGGAAGAAGGTAGGATTTTAGCTCCTAAA
GTGAAGTCTGAAGCATGCGACTCAAATATAATTACTCCTGGGACAGAATTTATGGCGACACTGTCAATTGCTCTTCAATATTACATACACATGAGATTAAACTATGATCCAGGCTGGCGAAATATTAAGGTCATTCTCTCTGATGCAAATGTTCCGGGTGAAGGTGAGCACAAAATCATGACATACATTCGCCTGCAAAG
AAATCTTGCAGGTTTTGATCCAAATACAAGACATTGCTTATATGGGCTGGATGCTGATCTAATCATGTTAGCATTGTCTACTCACGAGGTGCACTTCTCAATTTTGAGAGAGATTGTGGTAACGCCTGGGCAACAAGACAAATGCTTCCTTTGTGGTCAGGTTGGTCATCTTGCAACTGCATGTGAAGGAAAGCCAAAAA
GAAAGCAAGGAGATTTTGATGAGAAAGGCGGTGAACTGAATGTTAATCCTAAAAGGCCTTATCAGGTAAGTTGGTTATAGGTATATTTTTTGAAACTAGGATTTTGGTTATGCACGCTTGGAGGTTTTTTCTTTTTGTCAATGTTGTATGGTTGCATCAATACTAATAACAGTGACATTTGGGTAATGATAATTAAAGCA
AGTTTCAAGCTTATTATATATCATGTGGATGTTTTACTGCTTTTACTATTATTTTTACATCTAACTTGTTTCCGATATCTCAAATATTTGGCAGTTTGTCAACATTTGGGTTTTACGGGAATATTTAGAGTATGATATGAAGATTCCAAAACCTCCAATGGAGATTGATTTTGAACGGCTTGTGGATGATTTTGTCTTCA
TCTGTTTCTTTGTTGGCAATGATTTCCTTCCACACATGCCTACATTGGAAATTCGTGAGGTTTGTATGTAGAGATGTTACAACTCCTATATTCTATTTGAATTCCTTAAATAGTCGCTTAATAAATATTATCTAAATTTATGTTCTGTTCTGAAATTCATTTCAGTTGAAACGTTTGGAATATTTTTATGTCCAAGCTGA
TTGTTTTGTTCTAACTTCTAAGCATGATGCATTTATATGATTATCTCTAGTGTGCAGACAGTTTATTATAGATCTGTTTTTACAGGGTGCAATCAATTTGCTCATGGCTATATACAAGAAAGAATTCAGTGCAATGGGTGGCTATTTGACAGATGCAGGCGAGGTAATATTGGACAGGGTGGAGCATTTTATTCAGGCTG
TTGGAACATACGAGGATAAGATTTTTCAAAAGCGAGCTCATATTCAT
Intron 3 GTGAGAAATA ... CGGATGACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 22.12 | 303.8 | 76 | 95 |
| A2 | 22.09 | 206.3 | 49 | 67 |
| A3 | 21.42 | 183 | 40 | 59 |
| A4 | 18.16 | 203.5 | 36 | 54 |
| A5 | 20.06 | 94.5 | 16 | 31 |
| A6 | 15.18 | 64.5 | 9 | 14 |
| A7 | 18.06 | 298.3 | 41 | 90 |
| A8 | 19.05 | 183.3 | 25 | 61 |
| A9 | 18.55 | 198.3 | 24 | 66 |
| A10 | 20.24 | 225.5 | 34 | 80 |
>TRINITY_DN129087_c1_g2_i18 from sample A1 / Example spliced isoformCTCATTTATGTTTGCGTCATGCTGTCGGCGAGATATTTTCACTCTCGGTGAATACAATAGAGAGGATATCTATACAAGATGTCTATACAAGATATCAAGACACCGCAACGAAACCCTCGGGCGGAGGCAGGGCTTCGATTTTTTGCTTGTTTTGGCAGGTCTTCGTAGCAATTCCTTACTGAGTGAACAACGATTTGTAG
TTGCTGTCGGCCCGGATAACGCCATTGTTGTATAAGCAAGCTTTTAGGCGTCCTAAAAGAAACATTTGTTTCAGAGTTTTCTCTCGGAGAGCATCTGCAAGGGTTCTTTTGCCGGGGAAATATGGGTGTTCCTGCATTTTACAGATGGTTGGCTGATAAATATCCTCTAATAGTAATGGACGTTACGGAGGAAGAGCCCG
TCGAGATCAATGGCGTTACTATTCCAGTCGATACCAGCAAGCCTAATCCTAATAATATGGAGTTCGATAATCTTTACCTGGACATGAACGGGATTATTCATCCCTGCTTTCATCCCGAAGACCGGCCTTCACCTACAACTTATGATGAAGTCTTTAAGGCTATGTTTGATTATATAGACCGGCTCTTTGTGATTGTACGA
CCCAGGAAGCTTTTATACATGGCAATTGATGGTGTTGCACCAAGAGCTAAGATGAACCAGCAGCGTTCACGACGTTTCAGGGCAGCAAAAGAGGCAGATGATTTGGCAGCCGAAGAGGAAAGATTAAGAAAACAGTTTGAGGAAGAAGGTAGGATTTTAGCTCCTAAAGTGAAGTCTGAAGCATGCGACTCAAATATAAT
TACTCCTGGGACAGAATTTATGGCGACACTGTCAATTGCTCTTCAATATTACATACACATGAGATTAAACTATGATCCAGGCTGGCGAAATATTAAGGTCATTCTCTCTGATGCAAATGTTCCGGGTGAAGGTGAGCACAAAATCATGACATACATTCGCCTGCAAAGAAATCTTGCAGGTTTTGATCCAAATACAAGAC
ATTGCTTATATGGGCTGGATGCTGATCTAATCATGTTAGCATTGTCTACTCACGAGGTGCACTTCTCAATTTTGAGAGAGATTGTGGTAACGCCTGGGCAACAAGACAAATGCTTCCTTTGTGGTCAGGTTGGTCATCTTGCAACTGCATGTGAAGGAAAGCCAAAAAGAAAGCAAGGAGATTTTGATGAGAAAGGCGGT
GAACTGAATGTTAATCCTAAAAGGCCTTATCAGTTTGTCAACATTTGGGTTTTACGGGAATATTTAGAGTATGATATGAAGATTCCAAAACCTCCAATGGAGATTGATTTTGAACGGCTTGTGGATGATTTTGTCTTCATCTGTTTCTTTGTTGGCAATGATTTCCTTCCACACATGCCTACATTGGAAATTCGTGAGGG
TGCAATCAATTTGCTCATGGCTATATACAAGAAAGAATTCAGTGCAATGGGTGGCTATTTGACAGATGCAGGCGAGGTAATATTGGACAGGGTGGAGCATTTTATTCAGGCTGTTGGAACATACGAGGATAAGATTTTTCAAAAGCGAGCTCATATTCATCAGATTCAGACAGAGAGACGCAAGCGCTCAAAGACGAAGT
CAAGGAATGAAGAAAGTCGTGAACCCAATGTTCAGCCTGAATCTATAGTTCCAGTGATTCCATTTAAGGGTGCACGTCTGGCATGTGCCCCTCATCCATCTCCATATGAATCAGATTCATCTAAACTACCTGCAAAGCTCAGGAGAGTTAGTGAAAATAATGCCAGTATTGCTGCAGCATTAGTGAAGGTTGAAGATGAA
CTAACTGCTGAAGCTGCAAAGGCGAAAGAAAATGCAGAGGAGCTGAAACTTATGGTGAAAAATGCACTTCGTGAGAAGTCAGATCTTTTCAATTCTGAAGAACCTGAAAAGGACAAGGTTAAATTAGGAGAGTCTGGATGGAAAGAAAGATACTATTCTGAAAAATTTGAGGCACATACAGAAGAAGCTCGAGAACAAAC
CAAAAAGGATGCTGTCTTGAAATATACAGAAGGACTTTGTTGGATAATGCACTATTATTATCAAGGAGTGTGCTCATGGCAGTGGTATTATCCATACCATTATGCTCCCTTTGCCTCTGATCTTACGGGTCTCAGTCAGTTAAAGATTGCATTTAATCTTGGGAGTCCATTCAAGCCATTCAATCAGCTAATGGGAGTTC
TTCCTGCTGCGAGGTAATATTACTAATATGACCTTGTTAATTTGTTGCTATATTACTCTAACTTTTTTTCATGTATCAAAATGTCATTATCTAAGACATCGATGTGGTTACAGTGCAAATGCTCTTCCTGAGCATTACAGGCCATTAATGACTGATCCCAATTCACCTATCATTGACTTATATCCCACTGATTTTGAAAT
TGATATGAATGGCAAGCGATATGCCTGGCAGGGTGTTGCTAAGTTACCATTCATTGATGAAGCTCGCCTTCTTGCAGAAATTAGCAAGGTTGAAGGCACATTAACGGAAGAAGAAAGATTGAGAAATAGTGAAAAGTTTGACTTGCTTTTTGTGATTGCAAGTCATTGCTTAGCTCCAGATACATTTTCTCTCTATAAGC
AGTATGCACATCTTACAGTAAATGAGAGAGCTAAAGTCAAAGAAAAGATCAATCCTGATTCCAGTGGTGGATTAAATGGTTACTTCTGTCTCTGTGATGGGGAGGCTTGCCCACCTGTTTTCACTTCACCTGTTAAGGAGATGGAAAACATCATAAACAATCAAGTTCTGTCTGTAATTTACAAGTGCCCGTCTGTGCAT
AAACACATTCCAAGGCTCGTGGATGGGGTCATGATGCCAAAGAAGATTGTATCTGCGCAGGATGTAAGGACAGAAGCTTTATGGCATGAAGATACTGGTCGTAGGCACCAAAATCAAGATAGGCCACCTGTTCACGGAGCTATCTCAGGCCCTCAGCTTGGAGCAGCTGCTCATCGTCTTGTCATCAACAGTCTGCAGTT
AAAGAGCAATAGTTCAGGACGAACTAGTCATATGGTGCAGCAACCGGTGCAGGGGATGTCTTCTTCTTTCCAAAGTAGTAAAAATCATATGAGCCCAAAACCAAGACCAGCTGGCCCTCAAGGTTATGAAAAAGGTTTTGATTTGTCTGTGGGGAAGGTTTCTAATGGTGGAATGTATAAATCACAACAAGATGCAGGGT
CTGCTGCATTAGTGGATGACCATATTAGTTCCCAGTCAACTCCAAATAAAAAAGCCAATAAGAAAGGGGAACATGGTAGAAGAGATAACTCACAGCAGCAGCGCAATGGTGAGATGCACAGTAGTGACTATGTTAGTTCCCAGTCAACTCCAATTCAGAAAGCCAATAAGAAAAGGGGACGTGGTAGAAGAGATTACTCA
CAGCAGCAGCGCAATGGTGAGATTCACGGTAATGATCACCAACAGCAGCGCAATGGTGAGATACACGGTAATGATCACCAACAGCAGCACAATGGTGTAATACATGCTAATAGCTACCGGCAACAGCCAGACACACACTATCAAACATATCAAACTAATACTGAACGACAATATTACCAGCTCCCATTTGTGAATGCAAA
TGCTCAACAGTATCCACCCAGAATACCACCACCATCACAGGGAATCACAAGAGGGAGCAGTCTTGTGCAAATGCATTCAATATCTCAGTTTGCAACAATCAATGGTTACCCTATAAATCCTCAACGCACAACAGTCAATGGTTACCCTTTAAATAACAGGTTATATGACAACAATCAAGGCAGGGCGAGGTCGGCAATGG
TGCCAGGAAACATGTACTATAATCGTTATTAATCTTTAGTTTTTTGATACAGGGATTCTGTCCTCTTTCCCCATCTTTGTTTTTAATCGATTTTGCAATTTCCTTGTGAAACATCTTGATGACTGGCATTAGTTGAGGTGTACAATAGAAGCGATAGAAGCAATAGAAGCATTCTTTGATTATATTGATCTTTTATAGCT
TATTTGGAGGTTTATTATGGCTTGACTGTTCAAAATTGGAAATGTGGGGCCTTGTATTTGTTGAGAGTTGTTTTTCCTGCTCCGTATCTTTCTGCATAATGGCAGAGAGCATAAACGACTTTGATAATTATACAACATATTTCGTAACAGTACTGTATTTCCCGGAAGTGACTATGCATAAAATTATCAGGTCATCCCTT
GAGAGATGTGGACTCTACTCTTGTGGACTTTGAGTCTACTCTATAACAAAAATAATACCGTTACAGTCTTGTTTCATGGATATTATT
>TRINITY_DN129087_c1_g2_i2 from sample A1 / Example unspliced isoform:CAGATTCAGACAGAGAGACGCAAGCGCTCAAAGACGAAGTCAAGGAATGAAGAAAGTCGTGAACCCAATGTTCAGCCTGAATCTATAGTTCCAGTGATTCCATTTAAGGGTGCACGTCTGGCATGTGCCCCTCATCCATCTCCATATGAATCAGATTCATCTAAACTACCTGCAAAGCTCAGGAGAGTTAGTGAAAATAA
TGCCAGTATTGCTGCAGCATTAGTGAAGGTTGAAGATGAACTAACTGCTGAAGCTGCAAAGGCGAAAGAAAATGCAGAGGAGCTGAAACTTATGGTGAAAAATGCACTTCGTGAGAAGTCAGATCTTTTCAATTCTGAAGAACCTGAAAAGGACAAGGTTAAATTAGGAGAGTCTGGATGGAAAGAAAGATACTATTCTG
AAAAATTTGAGGCACATACAGAAGAAGCTCGAGAACAAACCAAAAAGGATGCTGTCTTGAAATATACAGAAGGACTTTGTTGGATAATGCACTATTATTATCAAGGAGTGTGCTCATGGCAGTGGTATTATCCATACCATTATGCTCCCTTTGCCTCTGATCTTACGGGTCTCAGTCAGTTAAAGATTGCATTTAATCTT
GGGAGTCCATTCAAGCCATTCAATCAGCTAATGGGAGTTCTTCCTGCTGCGAGTGCAAATGCACTTCCTGAGCATTACAGGCCATTAATGACTGATCCCAATTCACCTATCATTGACTTATATCCCACTGgtgagaaatatttttattcctgaaactgcttttgctttaggatacatgctatatttataaatagaacaac
atttccttctgtttactcatatatgcaaatttctcaacggatgacagATTTTGAAATTGATATGAATGGCAAGCGATATGCCTGGCAGGGTGTTGCTAAGTTACCATTCATTGATGAAGCTCGCCTTCTTGCAGAAATTAGCAAGGTTGAAGGCACATTAACGGAAGAAGAAAGATTGAGAAATAGTGAAAAGTTTGACT
TGCTTTTTGTGATTGCAAGTCATTGCTTAGCTCCAGATACATTTTCTCTCTATAAGCAGTATGCACATCTTACAGTAAATGAGAGAGCTAAAGTCAAAGAAAAGATCAATCCTGATTCCAGTGGTGGATTAAATGGTTACTTCTGTCTCTGTGATGGGGAGGCTTGCCCACCTGTTTTCACTTCACCTGTTAAGGAGATG
GAAAACATCATAAACAATCAAGTTCTGTCTGTAATTTACAAGTGCCCGTCTGTGCATAAACACATTCCAAGGCTCGTGGATGGGGTCATGATGCCAAAGAAGATTGTATCTGCGCAGGATGTAAGGACAGAAGCTTTATGGCATGAAGATACTGGTCGTAGGCACCAAAATCAAGATAGGCCACCTGTTCACGGAGCTAT
CTCAGGCCCTCAGCTTGGAGCAGCTGCTCATCGTCTTGTCATCAACAGTCTGCAGTTAAAGAGCAATAGTTCAGGACGAACTAGTCATATGGTGCAGCAACCGGTGCAGGGGATGTCTTCTTCTTTCCAAAGTAGTAAAAATCATATGAGCCCAAAACCAAGACCAGCTGGCCCTCAAGGTTATGAAAAAGGTTTTGATT
TGTCTGTGGGGAAGGTTTCTAATGGTGGAATGTATAAATCACAACAAGATGCAGGGTCTGCTGCATTAGTGGATGACCATATTAGTTCCCAGTCAACTCCAAATAAAAAAGCCAATAAGAAAGGGGAACATGGTAGAAGAGATAACTCACAGCAGCAGCGCAATGGTGAGATGCACAGTAGTGACTATGTTAGTTCCCAG
TCAACTCCAATTCAGAAAGCCAATAAGAAAAGGGGACGTGGTAGAAGAGATTACTCACAGCAGCAGCGCAATGGTGAGATTCACGGTAATGATCACCAACAGCA
Intron 4 GTAAGTTGGT ... TATTTGGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 20.94 | 583 | 203 | 105.8 |
| A2 | 19.91 | 444 | 123 | 97.8 |
| A3 | 20.55 | 447 | 113 | 118.3 |
| A4 | 22.54 | 458 | 169 | 97.5 |
| A5 | 22.11 | 210 | 59 | 60.3 |
| A6 | 19.82 | 91 | 19 | 26 |
| A7 | 18.6 | 366 | 67 | 100.3 |
| A8 | 18.49 | 140 | 30 | 33.5 |
| A9 | 19.45 | 311 | 70 | 80.3 |
| A10 | 20.53 | 389 | 92 | 109 |
>TRINITY_DN129087_c1_g2_i18 from sample A1 / Example spliced isoformCTCATTTATGTTTGCGTCATGCTGTCGGCGAGATATTTTCACTCTCGGTGAATACAATAGAGAGGATATCTATACAAGATGTCTATACAAGATATCAAGACACCGCAACGAAACCCTCGGGCGGAGGCAGGGCTTCGATTTTTTGCTTGTTTTGGCAGGTCTTCGTAGCAATTCCTTACTGAGTGAACAACGATTTGTAG
TTGCTGTCGGCCCGGATAACGCCATTGTTGTATAAGCAAGCTTTTAGGCGTCCTAAAAGAAACATTTGTTTCAGAGTTTTCTCTCGGAGAGCATCTGCAAGGGTTCTTTTGCCGGGGAAATATGGGTGTTCCTGCATTTTACAGATGGTTGGCTGATAAATATCCTCTAATAGTAATGGACGTTACGGAGGAAGAGCCCG
TCGAGATCAATGGCGTTACTATTCCAGTCGATACCAGCAAGCCTAATCCTAATAATATGGAGTTCGATAATCTTTACCTGGACATGAACGGGATTATTCATCCCTGCTTTCATCCCGAAGACCGGCCTTCACCTACAACTTATGATGAAGTCTTTAAGGCTATGTTTGATTATATAGACCGGCTCTTTGTGATTGTACGA
CCCAGGAAGCTTTTATACATGGCAATTGATGGTGTTGCACCAAGAGCTAAGATGAACCAGCAGCGTTCACGACGTTTCAGGGCAGCAAAAGAGGCAGATGATTTGGCAGCCGAAGAGGAAAGATTAAGAAAACAGTTTGAGGAAGAAGGTAGGATTTTAGCTCCTAAAGTGAAGTCTGAAGCATGCGACTCAAATATAAT
TACTCCTGGGACAGAATTTATGGCGACACTGTCAATTGCTCTTCAATATTACATACACATGAGATTAAACTATGATCCAGGCTGGCGAAATATTAAGGTCATTCTCTCTGATGCAAATGTTCCGGGTGAAGGTGAGCACAAAATCATGACATACATTCGCCTGCAAAGAAATCTTGCAGGTTTTGATCCAAATACAAGAC
ATTGCTTATATGGGCTGGATGCTGATCTAATCATGTTAGCATTGTCTACTCACGAGGTGCACTTCTCAATTTTGAGAGAGATTGTGGTAACGCCTGGGCAACAAGACAAATGCTTCCTTTGTGGTCAGGTTGGTCATCTTGCAACTGCATGTGAAGGAAAGCCAAAAAGAAAGCAAGGAGATTTTGATGAGAAAGGCGGT
GAACTGAATGTTAATCCTAAAAGGCCTTATCAGTTTGTCAACATTTGGGTTTTACGGGAATATTTAGAGTATGATATGAAGATTCCAAAACCTCCAATGGAGATTGATTTTGAACGGCTTGTGGATGATTTTGTCTTCATCTGTTTCTTTGTTGGCAATGATTTCCTTCCACACATGCCTACATTGGAAATTCGTGAGGG
TGCAATCAATTTGCTCATGGCTATATACAAGAAAGAATTCAGTGCAATGGGTGGCTATTTGACAGATGCAGGCGAGGTAATATTGGACAGGGTGGAGCATTTTATTCAGGCTGTTGGAACATACGAGGATAAGATTTTTCAAAAGCGAGCTCATATTCATCAGATTCAGACAGAGAGACGCAAGCGCTCAAAGACGAAGT
CAAGGAATGAAGAAAGTCGTGAACCCAATGTTCAGCCTGAATCTATAGTTCCAGTGATTCCATTTAAGGGTGCACGTCTGGCATGTGCCCCTCATCCATCTCCATATGAATCAGATTCATCTAAACTACCTGCAAAGCTCAGGAGAGTTAGTGAAAATAATGCCAGTATTGCTGCAGCATTAGTGAAGGTTGAAGATGAA
CTAACTGCTGAAGCTGCAAAGGCGAAAGAAAATGCAGAGGAGCTGAAACTTATGGTGAAAAATGCACTTCGTGAGAAGTCAGATCTTTTCAATTCTGAAGAACCTGAAAAGGACAAGGTTAAATTAGGAGAGTCTGGATGGAAAGAAAGATACTATTCTGAAAAATTTGAGGCACATACAGAAGAAGCTCGAGAACAAAC
CAAAAAGGATGCTGTCTTGAAATATACAGAAGGACTTTGTTGGATAATGCACTATTATTATCAAGGAGTGTGCTCATGGCAGTGGTATTATCCATACCATTATGCTCCCTTTGCCTCTGATCTTACGGGTCTCAGTCAGTTAAAGATTGCATTTAATCTTGGGAGTCCATTCAAGCCATTCAATCAGCTAATGGGAGTTC
TTCCTGCTGCGAGGTAATATTACTAATATGACCTTGTTAATTTGTTGCTATATTACTCTAACTTTTTTTCATGTATCAAAATGTCATTATCTAAGACATCGATGTGGTTACAGTGCAAATGCTCTTCCTGAGCATTACAGGCCATTAATGACTGATCCCAATTCACCTATCATTGACTTATATCCCACTGATTTTGAAAT
TGATATGAATGGCAAGCGATATGCCTGGCAGGGTGTTGCTAAGTTACCATTCATTGATGAAGCTCGCCTTCTTGCAGAAATTAGCAAGGTTGAAGGCACATTAACGGAAGAAGAAAGATTGAGAAATAGTGAAAAGTTTGACTTGCTTTTTGTGATTGCAAGTCATTGCTTAGCTCCAGATACATTTTCTCTCTATAAGC
AGTATGCACATCTTACAGTAAATGAGAGAGCTAAAGTCAAAGAAAAGATCAATCCTGATTCCAGTGGTGGATTAAATGGTTACTTCTGTCTCTGTGATGGGGAGGCTTGCCCACCTGTTTTCACTTCACCTGTTAAGGAGATGGAAAACATCATAAACAATCAAGTTCTGTCTGTAATTTACAAGTGCCCGTCTGTGCAT
AAACACATTCCAAGGCTCGTGGATGGGGTCATGATGCCAAAGAAGATTGTATCTGCGCAGGATGTAAGGACAGAAGCTTTATGGCATGAAGATACTGGTCGTAGGCACCAAAATCAAGATAGGCCACCTGTTCACGGAGCTATCTCAGGCCCTCAGCTTGGAGCAGCTGCTCATCGTCTTGTCATCAACAGTCTGCAGTT
AAAGAGCAATAGTTCAGGACGAACTAGTCATATGGTGCAGCAACCGGTGCAGGGGATGTCTTCTTCTTTCCAAAGTAGTAAAAATCATATGAGCCCAAAACCAAGACCAGCTGGCCCTCAAGGTTATGAAAAAGGTTTTGATTTGTCTGTGGGGAAGGTTTCTAATGGTGGAATGTATAAATCACAACAAGATGCAGGGT
CTGCTGCATTAGTGGATGACCATATTAGTTCCCAGTCAACTCCAAATAAAAAAGCCAATAAGAAAGGGGAACATGGTAGAAGAGATAACTCACAGCAGCAGCGCAATGGTGAGATGCACAGTAGTGACTATGTTAGTTCCCAGTCAACTCCAATTCAGAAAGCCAATAAGAAAAGGGGACGTGGTAGAAGAGATTACTCA
CAGCAGCAGCGCAATGGTGAGATTCACGGTAATGATCACCAACAGCAGCGCAATGGTGAGATACACGGTAATGATCACCAACAGCAGCACAATGGTGTAATACATGCTAATAGCTACCGGCAACAGCCAGACACACACTATCAAACATATCAAACTAATACTGAACGACAATATTACCAGCTCCCATTTGTGAATGCAAA
TGCTCAACAGTATCCACCCAGAATACCACCACCATCACAGGGAATCACAAGAGGGAGCAGTCTTGTGCAAATGCATTCAATATCTCAGTTTGCAACAATCAATGGTTACCCTATAAATCCTCAACGCACAACAGTCAATGGTTACCCTTTAAATAACAGGTTATATGACAACAATCAAGGCAGGGCGAGGTCGGCAATGG
TGCCAGGAAACATGTACTATAATCGTTATTAATCTTTAGTTTTTTGATACAGGGATTCTGTCCTCTTTCCCCATCTTTGTTTTTAATCGATTTTGCAATTTCCTTGTGAAACATCTTGATGACTGGCATTAGTTGAGGTGTACAATAGAAGCGATAGAAGCAATAGAAGCATTCTTTGATTATATTGATCTTTTATAGCT
TATTTGGAGGTTTATTATGGCTTGACTGTTCAAAATTGGAAATGTGGGGCCTTGTATTTGTTGAGAGTTGTTTTTCCTGCTCCGTATCTTTCTGCATAATGGCAGAGAGCATAAACGACTTTGATAATTATACAACATATTTCGTAACAGTACTGTATTTCCCGGAAGTGACTATGCATAAAATTATCAGGTCATCCCTT
GAGAGATGTGGACTCTACTCTTGTGGACTTTGAGTCTACTCTATAACAAAAATAATACCGTTACAGTCTTGTTTCATGGATATTATT
>TRINITY_DN129087_c1_g2_i11 from sample A1 / Example unspliced isoform:AGCAAAAGAGGCAGATGATTTGGTGAGTGTGTTAGGAAAAATGGTAATAATATTCAAAAGAGAAGATGTTTATAAGCACATCTAAACAAACTTTCAAGCCGAGAATGAGGTTTAATGTTTTTTCATGCAATTGTCAGGCAGCCGAAGAGGAAAGATTAAGAAAACAGTTTGAGGAAGAAGGTAGGATTTTAGCTCCTAAA
GTGAAGTCTGAAGCATGCGACTCAAATATAATTACTCCTGGGACAGAATTTATGGCGACACTGTCAATTGCTCTTCAATATTACATACACATGAGATTAAACTATGATCCAGGCTGGCGAAATATTAAGGTCATTCTCTCTGATGCAAATGTTCCGGGTGAAGGTGAGCACAAAATCATGACATACATTCGCCTGCAAAG
AAATCTTGCAGGTTTTGATCCAAATACAAGACATTGCTTATATGGGCTGGATGCTGATCTAATCATGTTAGCATTGTCTACTCACGAGGTGCACTTCTCAATTTTGAGAGAGATTGTGGTAACGCCTGGGCAACAAGACAAATGCTTCCTTTGTGGTCAGGTTGGTCATCTTGCAACTGCATGTGAAGGAAAGCCAAAAA
GAAAGCAAGGAGATTTTGATGAGAAAGGCGGTGAACTGAATGTTAATCCTAAAAGGCCTTATCAGgtaagttggttataggtatattttttgaaactaggattttggttatgcacgcttggaggttttttctttttgtcaatgttgtatggttgcatcaatactaataacagtgacatttgggtaatgataattaaagca
agtttcaagcttattatatatcatgtggatgttttactgcttttactattatttttacatctaacttgtttccgatatctcaaatatttggcagTTTGTCAACATTTGGGTTTTACGGGAATATTTAGAGTATGATATGAAGATTCCAAAACCTCCAATGGAGATTGATTTTGAACGGCTTGTGGATGATTTTGTCTTCA
TCTGTTTCTTTGTTGGCAATGATTTCCTTCCACACATGCCTACATTGGAAATTCGTGAGGTTTGTATGTAGAGATGTTACAACTCCTATATTCTATTTGAATTCCTTAAATAGTCGCTTAATAAATATTATCTAAATTTATGTTCTGTTCTGAAATTCATTTCAGTTGAAACGTTTGGAATATTTTTATGTCCAAGCTGA
TTGTTTTGTTCTAACTTCTAAGCATGATGCATTTATATGATTATCTCTAGTGTGCAGACAGTTTATTATAGATCTGTTTTTACAGGGTGCAATCAATTTGCTCATGGCTATATACAAGAAAGAATTCAGTGCAATGGGTGGCTATTTGACAGATGCAGGCGAGGTAATATTGGACAGGGTGGAGCATTTTATTCAGGCTG
TTGGAACATACGAGGATAAGATTTTTCAAAAGCGAGCTCATATTCAT
Intron 5 GTTTGTATGT ... TATTTTACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 7.51 | 493 | 3 | 43 |
| A2 | 6.85 | 418 | 3 | 33 |
| A3 | 8.55 | 441 | 1 | 45 |
| A4 | 6.15 | 443 | 0 | 30.5 |
| A5 | 7.38 | 158 | 0 | 13.5 |
| A6 | 6 | 88 | 0 | 6 |
| A7 | 5.57 | 399 | 0 | 25 |
| A8 | 5.77 | 184 | 1 | 12 |
| A9 | 7.36 | 301 | 0 | 26 |
| A10 | 4.76 | 418 | 0 | 22 |
>TRINITY_DN115934_c1_g1_i6 from sample A3 / Example spliced isoformGGAAGAGCAGTTACTATATTTTATCCCCGCAACTCATTCCCTCGCCATGTTGATAAAAGAACACACTAAAATCCCGAGGAACAACAACTTCAACGTAAGGAAGCACCTAAACCCTAAATAGCGACGAACTCATTTATGTTTGCGTCATGCTGGCGGCAAGATATTTTCACTCTCGGTGAATACAATAGAGAGGATATCTA
CACAAGATGTCTGTCTATACAAGATATCAAGACACCGCAACGAAACCCTCGGGCGGAGGCAGGGCTTCGATTTTTTGCTTGTTTTGGCAGGTCTTCGTAGCAATTCCTTATTGAGTGAAGAACGATTTGTAGTTGCTGTCGGCCCGGATAACGCCATTGTTGTATAAGCAAGCTTTTAGGCGTCCTAAAAGAAACATTTG
TTTCAGAGTTTTCTCTCGGAGAGCATTTGCAAGGGTTCTTTTGCCGGGGAAATATGGGTGTTCCTGCATTTTACAGATGGTTGGCTGATAAATATCCTCTAATAGTAATGGACGTTACGGAGGAAGAGCCCGTCGAGATCAATGGCGTTACTATTCCAGTCGATACCAGCAAGCCTAATCCTAATAATATGGAGTTCGAT
AATCTTTACCTGGACATGAACGGGATTATTCATCCCTGCTTTCATCCCGAAGACCGGCCTTCACCTACAACTTATGATGAAGTCTTTAAGGCTATGTTTGATTATATAGACCGGCTCTTTGTGATTGTACGACCCAGGAAGCTTTTATACATGGCAATTGATGGTGTTGCACCAAGAGCTAAGATGAACCAGCAGCGTTC
ACGACGTTTCAGGGCAGCAAAAGAGGCAGATGATTTGGCAGCCGAAGAGGAAAGATTAAGAAAACAGTTTGAGGAAGAAGGTAGGATTTTAGCTCCTAAAGTGAAGTCTGAAGCATGCGACTCAAATATAATTACTCCTGGGACAGAATTTATGGCGACACTGTCAATTGCTCTTCAATATTACATACACATGAGATTAA
ACTATGATCCGGGCTGGCGAAATATTAAGGTCATTCTCTCTGATGCAAATGTTCCGGGTGAAGGTGAGCACAAAATCATGACATACATTCGCCTGCAAAGAAATCTTGCAGGTTTTGATCCAAATACAAGACATTGCTTATATGGGCTGGATGCTGATCTAATCATGTTAGCATTGTCTACTCACGAGGTGCACTTCTCA
ATTTTGAGAGAGATTGTGGTAACGCCTGGGCAACAAGACAAATGCTTCCTTTGTGGTCAGGTTGGTCATCTTGCAACTGCATGTGAAGGAAAGCCAAAAAGAAAGCAAGGAGATTTTGATGAGAAAGGCGGTGAACTGAATGTTAATCCTAAAAGGCCTTATCAGTTTGTCAACATTTGGGTTTTACGGGAATATTTAGA
GTATGATATGAAGATTCCAAAACCTCCAATGGAGATTGATTTTGAACGGCTCGTGGATGATTTTGTCTTCATCTGTTTCTTTGTTGGCAATGATTTCCTTCCACACATGCCTACATTGGAAATTCGTGAGGGTGCAATCAATTTGCTCATGGCTATATACAAGAAAGAATTCAGTGCAATGGGTGGCTATTTGACAGATG
CAGGCGAGGTAATATTGGACAGGGTGGAGCATTTTATTCAGGCTGTTGGAACATACGAGGATAAGATTTTTCAAAAGCGAGCTCATATTCATCAGATTCAGACAGAGAGACGCAAGCGCTCAAAGACGAAGTCAAGGAATGAAGAAAGTCGTGAACCCAATGTTCAGCCTGAATCTATAGTTCCAGTGATTCCATTTAAG
GGTGCACGTCTGGCATGTGCCCCTCATCCATCTCCATATGAATCAGATTCATCTAAACTACCTGCAAAGCTCAGGAGAGTTAGTGAAAATAATGCCAGTATTGCTGCAGCATTAGTGAAGGTTGAAGATGAACTAACTGCTGAAGCTGCAAAGGCGAAAGAAAATGCAGAGGAGCTGAAACTTATGGTGAAAAATGCACT
TCGTGAGAAGTCAGATCTTTTCAATTCTGAAGAACCTGAAAAGGACAAGGTTAAATTAGGAGAGTCTGGATGGAAAGAAAGATACTATTCTGAAAAATTTGAGGCACATACAGAAGAAGCTCGAGAACAAACCAAAAAGGATGCTGTAAGTACTGTGCCTGGGTTTTGTAGGTGTTTGATATATATATATAGGGCTTTGT
AGGTGTTTGATCTATATATATATAGAGAGAGAGAGAGAGAGAGGATGTATTTGTATGTACCTTCATATACACCTATGTTTTAT
>TRINITY_DN115934_c1_g1_i5 from sample A3 / Example unspliced isoform:ATTGGAAATTCGTGAGgtttgtatgtagagatgttacaactcctatattctatttgaattccttaaatagtcgcttaataaatattatctaaatttatgttctgttctgaaattcatttcagttgaaacgtttggaatatttttatgtccaagctgattgttttgttctaacttctaagcatgatgcatgtatatgatta
tctctagtgtgcagacagtttattatagatctgtttttacagctccaattctctgttttggttctttgacaatagtctcctggaagataatttgttggtggctatttcctattttacagGGTGCAATCAATTTGCTCATGGCTATATACAAGAAAGAATTCAGTGCAATGGGTGGCTATTTGACAGATGCAGGCGAGGTA
ATATTGGACAGGGTGGAGCATTTTATTCAGGCTGTTGGAACATACGAGGATAAGATTTTTCAAAAGCGAGCTCATATTCATCAGATTCAGACAGAGAGACGCAAGCGCTCAAAGACGAAGTCAAGGAATGAAGAAAGTCGTGAACCCAATGTTCAGCCTGAATCTATAGTTCCAGTGATTCCATTTAAGGGTGCACGTCT
GGCATGTGCCCCTCATCCATCTCCATATGAATCAGATTCATCTAAACTACCTGCAAAGCTCAGGAGAGTTAGTGAAAATAATGCCAGTATTGCTGCAGCATTAGTGAAGGTTGAAGATGAACTAACTGCTGAAGCTGCAAAGGCGAAAGAAAATGCAGAGGAGCTGAAACTTATGGTGAAAAATGCACTTCGTGAGAAGT
CAGATCTTTTCAATTCTGAAGAACCTGAAAAGGACAAGGTTAAATTAGGAGAGTCTGGATGGAAAGAAAGATACTATTCTGAAAAATTTGAGGCACATACAGAAGAAGCTCGAGAACAAACCAAAAAGGATGCTGTCTTGAAATATACAGAAGGACTTTGTTGGATAATGCACTATTATTATCAAGGAGTGTGCTCATGG
CAGTGGTATTATCCATACCATTATGCTCCCTTTGCCTCTGATCTTACGGGTCTCAGTCAGTTAAAGATTGCATTTAATCTTGGGAGTCCATTCAAGCCATTCAATCAGCTAATGGGAGTTCTTCCTGCTGCGAGTGCAAATGCACTTCCTGAGCATTACAGGCCATTAATGACTGATCCCAATTCACCTATCATTGACTT
ATATCCCACTGATTTTGAAATTGATATGAATGGCAAGCGATATGCCTGGCAGGGTGTTGCTAAATTACCATTCATTGATGAAGCTCGCCTTCTTGCAGAAATTAGCAAGGTTGAAGGCACATTAACGGAAGAAGAAAGATTGAGAAATAGTGAAAAGTTTGACTTGCTTTTTGTGATTGCAAGTCATTGCTTAGCTCCAG
ATACATTTTCTCTCTATAAGCAGTATGCACATCTTACAGTAAATGAGAGAGCTAAAGTCAAAGAAAAGATCAATCCTGATTCCAGTGGTGGATTAAATGGTTACTTCTGTCTCTGTGATGGGGAGGCTTGCCCACCTGTTTTCACTTCACCTGTTAAGGAGATGGAAAACATCATAAACAATCAAGTTCTGTCTGTAATT
TACAAGTGCCCGTCTGTGCATAAACACATTCCAAGGCTCGTGGATGGGGTCATGATGCCAAAGAAGATTGTATGTGCGCAGGATGTAAGGACAGAAGCTTTATGGCATGAAGATACTGGTCGTAGGCACCAAAATCAAGATAGGCCACCTGTTCACGGAGCTATCTCAGGCCCTCAGCTTGGAGCAGCTGCTCATCGTCT
TGTCATCAACAGTCTGCAGTTAAAGAGCAATAGTTCAGGACGAACTAGTCATATGGTGCAGCAACCGGTGCAGGGGATGTCTTCTTCTTTCCAAAGTAGTAAAAATCATATGAGCCCAAAACCAAGACCAGCTGGCCCTCAAGGTTATGAAAAAGGTTTTGATTTGTCTGTGGGGAAGGTTTCTAATGGTGGAATGTATA
AATCACAACAAGATGCAGGGTCTGCTGCATTAGTGGATGACCATATTAGTTCCCAGTCAACTCCAAATAAAAAAGCCAATAAGAAAGGGGAACATGGTAGAAGAGATAACTCACAGCAGCAGCGCAATGGTGAGATGCACAGTAGTGACTATGTTAGTTCACAGTCAACTCCAATTCAGAAAGCCAATAAGAAAAGGGGA
CGTGGTAGAAGAGATTACTCACAGCAGCAGCGCAATGGTGAGATTCACGGTAATGATCACCAACAGCAGCGCAATGGTGAGATACACGGTAATGATCACCAACAGCAGCACAATGGTGTAATACATGCTAATAGCTACCGGCAACAGCCAGACACACACTATCAAACATATCAAACTAATACTGAACGACAATATTACCA
GCTCCCATTTGTGAATGCAAATGCTCAACAGTATCCACCCAGAATACCACCACCATCACAGGGAATCACAAGAGGGAGCAGTCTTGTGCAAATGCATTCAATATCTCAGTTTGCAACAATCAATGGTTACCCTATAAATCCTCAACGCACAACAGTCAATGGTTACCCTTTAAATAACAGGTTATATGACAACAATCAAG
GCAGGGCAAGGTCGGCAATGGTGCCAGGAAACATGTACTATAATCGTTATTAATCTTTAGTTTTTTGATACAGGGATTCTGTCCTCTTTCCCCATCTTTGTTTTTAATCGATTTTGCAATTTCCTTGTGAAACATCTTGATGACTGGCATTAGTTGAGGTGTACAATAGAAGCGATAGAAGCAATAGAAGCATTCTTTGA
TTATATTGATCTTTTATAGCTTATTTGGAGGTTTATTATGGCTTGACTGTTCAAAATTGGAAATGTGGGGCCTTGTATTTGTTGAGAGTTGTTTTTCCTGCTCCGTATCTTTCTGCATAATGGCAGAGAGCATAAACGACTTTGATAATTATACAACATATTTCGTAACAGTACTGTATTTCCCGGAAGTGACTATGCAT
AAAATTATCAGGTCATCCCTTGAGAGATGTGGACTCTACTCTTGTGGACTTTGAGTCTACTCTATAACAAAAATAATACCGT
Intron 6 GTAAGTGGTT ... TGTATTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 0.96 | 412 | 2 | 4 |
| A2 | 1.08 | 366 | 0 | 4 |
| A3 | 0.28 | 352 | 1 | 1 |
| A4 | 2.16 | 363 | 1 | 8 |
| A5 | 1.68 | 176 | 0 | 3 |
| A6 | 0 | 263 | 0 | 0 |
| A7 | 0 | 939 | 0 | 0 |
| A8 | 0 | 773 | 0 | 0 |
| A9 | 0 | 811 | 0 | 0 |
| A10 | 0 | 866 | 0 | 0 |
>TRINITY_DN106185_c0_g2_i2 from sample A4 / Example spliced isoformGTTTGATTATATAGACCGGCTCTTTGTGATTGTACGACCCAGGAAGCTTTTATACATGGCAATTGATGGTGTTGCACCAAGAGCTAAGATGAACCAGCAGCGTTCACGACGTTTCAGGGCAGCAAAAGAGGCAGATGATTTGGCAGCCGAAGAGGAAAGATTAAGAAAACAGTTTGAGGAAGAAGGTAGGATTTTAGCTC
CTAAAGTGAAGTCTGAAGCATGCGACTCAAATATAATTACTCCTGGGACAGAATTTATGGCGACACTGTCAATTGCTCTTCAATATTACATACACATGAGATTAAACTATGATCCAGGCTGGCGAAATATTAAGGTCATTCTCTCTGATGCAAATGTTCCGGGTGAAGGTGAGCACAAAATCATGACATACATTCGCCTG
CAAAGAAATCTTGCAGGTTTTGATCCAAATACAAGACATTGCTTATATGGGCTGGATGCTGATCTAATCATGTTAGCATTGTCTACTCACGAGGTGCACTTCTCAATTTTGAGAGAGATTGTGGTAACGCCTGGGCAACAAGACAAATGCTTCCTTTGTGGTCAGGTTGGTCATCTTGCAACTGCATGTGAAGGAAAGCC
AAAAAGAAAGCAAGGAGATTTTGATGAGAAAGGCGGTGAACTGAATGTTAATCCTAAAAGGCCTTATCAGGTAAGTTGGTTATAGGTATATTTTTTGAAACTAGGATTTTGGTTATGCACGCTTGGAGGTTTTTTCTTTTTGTCAATGTTGTATGGTTGCATCAATACTAATAACAGTGACATTTGGGTAATGATAATTA
AAGCAAGTTTCAAGCTTATTATATATCATGTGGATGTTTTACTGCTTTTACTATTATTTTTACATCTAACTTGTTTCCGATATCTCAAATATTTGGCAGTTTGTCAACATTTGGGTTTTACGGGAATATTTAGAGTATGATATGAAGATTCCAAAACCTCCAATGGAGATTGATTTTGAACGGCTCGTGGATGATTTTGT
CTTCATCTGTTTCTTTGTTGGCAATGATTTCCTTCCACACATGCCTACATTGGAAATTCGTGAGGGTGCAATCAATTTGCTCATGGCTATATACAAGAAAGAATTCAGTGCAATGGGTGGCTATTTGACAGATGCAGGCGAGGTAATATTGGACAGGGTGGAGCATTTTATTCAGGCTGTTGGAACATACGAGGATAAGA
TTTTTCAAAAGCGAGCTCATATTCATCAGATTCAGACAGAGAGACGCAAGCGTTCAAAGACGAAGTCAAGGAATGAAGAAAGTCGCGAACCCAATGTTCAGCCTGAATCTATAGTTCCAGTGATTCCATTTAAGGGTGCACGTCTGGCATGTGCCCCTCATCCATCTCCATATGAATCAGATTCATCTAAACTACCTGCA
AAGCTCAGGAGAGTTAGTGAAAATAATGCCAGTATTGCTGCAGCATTAGTGAAGGTTGAAGATGAACTAACTGCTGAAGCTGCAAAGGCGAAAGAAAATGCAGAGGAGCTGAAACTTATGGTGAAAAATGCACTTCGTGAGAAGTCAGATCTTTTCAATTCTGAAGAACCTGAAAAGGACAAGGTTAAATTAGGAGAGTC
TGGATGGAAAGAAAGATACTATTCTGAAAAATTTGAGGCACATACAGAAGAAGCTCGAGAACAAACCAAAAAGGATGCTGTCTTGAAATATACAGAAGGACTTTGTTGGATAATGCACTATTATTATCAAGGAGTGTGCTCATGGCAGTGGTATTATCCATACCATTATGCTCCCTTTGCCTCTGATCTTACGGGTCTCA
GTCAGTTAAAGATTGCATTTAATCTTGGGAGTCCATTCAAGCCATTCAATCAGCTAATGGGAGTTCTTCCTGCTGCGAGTGCAAATGCACTTCCTGAGCATTACAGGCCATTAATGACTGATCCCAATTCACCTATCATTGACTTATATCCCACTGATTTTGAAATTGATATGAATGGCAAGCGATATGCCTGGCAGGGT
GTTGCTAAATTACCATTCATTGATGAAGCTCGCCTTCTTGCAGAAATTAGCAAGGTTGAAGGCACATTAACGGAAGAAGAAAGATTGAGAAATAGTGAAAAGTTTGACTTGCTTTTTGTGATTGCAAGTCATTGCTTAGCTCCAGATACATTTTCTCTCTATAAGCAGTATGCACATCTTACAGTAAATGAGAGAGCTAA
AGTCAAAGAAAAGATCAATCCTGATTCCAGTGGTGGATTAAATGGTTACTTCTGTCTCTGTGATGGGGAGGCTTGCCCACCTGTTTTCACTTCACCTGTTAAGGAGATGGAAAACATCATAAACAATCAAGTTCTGTCTGTAATTTACAAGTGCCCGTCTGTGCATAAACACATTCCAAGGCTCGTGGATGGGGTCATGA
TGCCAAAGAAGATTGTATCTGCGCAGGATGTAAGGACAGAAGCTTTATGGCATGAAGATACTGGTCGTAGGCACCAAAATCAAGATAGGCCACCTGTTCACGGAGCTATCTCAGGCCCTCAGCTTGGAGCAGCTGCTCATCGTCTTGTCATCAACAGTCTGCAGTTAAAGAGCAATAGTTCAGGACGAACTAGTCATATG
GTGCAGCAACCGGTGCAGGGGATGTCTTCTTCTTTCCAAAGTAGTAAAAATCATATGAGCCCAAAACCAAGACCAGCTGGCCCTCAAGGTTATGAAAAAGGTTTTGATTTGTCTGTGGGGAAGGTTTCTAATGGTGGAATGTATAAATCACAACAAGATGCAGGGTCTGCTGCATTAGTGGATGACCATATTAGTTCCCA
GTCAACTCCAAATAAAAAAGCCAATAAGAAAGGGGAACATGGTAGAAGAGATAACTCACAGCAGCAGCGCAATGGTGAGATGCACAGTAGTGACTATGTTAGTTCCCAGTCAACTCCAATTCAGAAAGCCAATAAGAAAAGGGGACGTGGTAGAAGAGATTACTCACAGCAGCAGCGCAATGGTGAGATTCACGGTAATG
ATCACCAACAGCAGCGCAATGGTGAGATACACGGTAATGATCACCAACAGCAGCACAATGGTGTAATACATGCTAATAGCTACCGGCAACAGCCAGACACACACTATCAAACATATCAAACTAATACTGAACGACAATATTACCAGCTCCCATTTGTGAATGCAAATGCTCAACAGTATCCACCCAGAATACCACCACCA
TCACAGGGAATCACAAGAGGGAGCAGTCTTGTGCAAATGCATTCAATATCTCAGTTTGCAACAATCAATGGTTACCCTATAAATCCTCAACGCACAACAGTCAATGGTTACCCTTTAAATAACAGGTTATATGACAACAATCAAGGCAGGGCGAGGTCGGCAATGGTGCCAGGAAACATGTACTATAATCGTTATTAATC
TTTAGTTTTTTGATACAGGGATTCTGTCCTCTTTCCCCATCTTTGTTTTTAATCGATTTTGCAATTTCCTTGTGAAACATCTTGATGACTGGCATTAGTTGAGGTGTACAATAGAAGCGATAGAAGCAATAGAAGCATTCTTTGATTATATTGATCTTTTATAGCTTATTTGGAGGTTTATTATGGCTTGACTGTTCAAA
ATTGGAAATGTGGGGCCTTGTATTTGTTGAGAGTTGTTTTTCCTGCTCCGTATCTTTCTGCATAATGGCAGAGAGCATAAACGACTTTGATAATTATACAACATATTTCGTAACAGTACTGTATTTCCCGGAAGTGACTATGCATAAAATTATCAGGTCATCCCTTGAGAGATGTGGACTCTACTCTTGTGGACTTTGAG
TCTACTCTATAACAAAAATAATACCGT
>TRINITY_DN106185_c0_g2_i1 from sample A4 / Example unspliced isoform:CATCATAAACAATCAAGTTCTgtaagtggttaacctttattgtttgtacattgtacaatctttgaaattgttattcaatttgtatcaagttctgaatacttatttattaaatgtatttcagGTCTGTAATTTACAAGTGCCCGTCTGTGCATAAACACATTCCAAGGCTCGTGGATGGGGTCATGATGCCAAAGAAGGTC
TAGACTCTATGTAGATAATAAGCCTAATGTGTCTTTGCTCTAAAAGGATTTTTGAGAGTTATTTTTGAACTTTCCAGATTGATTTTCTTTCAATTAATCATGTGCAGACAGCATGGTAGTTTCTTGTATAATATAGACTACCTGATAGTGTCTCATAGTATCTGATCTTTTCTTTCAACTATACCCATGATATCCTCTTC
TTGAACATTTAAAAAAGACCCTGCTTTTCTTTTAGCATGTGATACTTATATTATATCTCTCTGACATTTCATACTGGTTGGCAGATTGTATCTGCGCAGGATGTAAGGACAGAAGCTTTATGGCATGAAGATACTGGTCGTAGGCACCAAAATCAAGATAGGCCACCTGTTCACGGAGCTATCTCAGGCCCTCAGCTTGG
AGCAGCTGCTCATCGTCTTGTCATCAACAGTCTGCAGTTAAAGAGCAATAGTTCAGGACGAACTAGTCATATGGTGCAGCAACCGGTGCAGGGGATGTCTTCTTCTTTCCAAAGTAGTAAAAATCATATGAGCCCAAAACCAAGACCAGCTGGCCCTCAAGGTTATGAAAAAGGTTTTGATTTGTCTGTGGGGAAGGTTT
CTAATGGTGGAATGTATAAATCACAACAAGATGCAGGGTCTGCTGCATTAGTGGATGACCATATTAGTTCCCAGTCAACTCCAAATAAAAAAGCCAATAAGAAAGGGGAACATGGTAGAAGAGATAACTCACAGCAGCAGCGCAATGGTGAGATGCACAGTAGTGACTATGTTAGTTCCCAGTCAACTCCAATTCAGAAA
GCCAATAAGAAAAGGGGACGTGGTAGAAGAGATTACTCACAGCAGCAGCGCAATGGTGAGATTCACGGTAATGATCACCAACAGCAGCGCAATGGTGAGATACACGGTAATGATCACCAACAGCAGCACAATGGTGTAATACATGCTAATAGCTACCGGCAACAGCCAGACACACACTATCAAACATATCAAACTAATAC
TGAACGACAATATTACCAGCTCCCATTTGTGAATGCAAATGCTCAACAGTATCCACCCAGAATACCACCACCATCACAGGGAATCACAAGAGGGAGCAGTCTTGTGCAAATGCATTCAATATCTCAGTTTGCAACAATCAATGGTTACCCTATAAATCCTCAACGCACAACAGTCAATGGTTACCCTTTAAATAACAGGT
TATATGACAACAATCAAGGCAGGGCGAGGTCGGCAATGGTGCCAGGAAACATGTACTATAATCGTTATTAATCTTTAGTTTTTTGATACAGGGATTCTGTCCTCTTTCCCCATCTTTGTTTTTAATCGATTTTGCAATTTCCTTGTGAAACATCTTGATGACTGGCATTAGTTGAGGTGTACAATAGAAGCGATAGAAGC
AATAGAAGCATTCTTTGATTATATTGATCTTTTATAGCTTATTTGGAGGTTTATTATGGCTTGACTGTTCAAAATTGGAAATGTGGGGCCTTGTATTTGTTGAGAGTTGTTTTTCCTGCTCCGTATCTTTCTGCATAATGGCAGAGAGCATAAACGACTTTGATAATTATACAACATATTTCGTAACAGTACTGTATTTC
CCGGAAGTGACTATGCATAAAATTATCAGGTCATCCCTTGAGAGATGTGGACTCTACTCTTGTGGACTTTGAGTCTACTCTATAACAAAAATAATACCGT
Intron 7 GTAAGTGAGT ... GTAATTGTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 22.22 | 77 | 26 | 18 |
| A2 | 23.58 | 47 | 16 | 13 |
| A3 | 32.93 | 56 | 31 | 24 |
| A4 | 30 | 28 | 14 | 10 |
| A5 | 29.17 | 17 | 5 | 9 |
| A6 | 25 | 15 | 8 | 2 |
| A7 | 21.82 | 43 | 13 | 11 |
| A8 | 22.22 | 14 | 1 | 7 |
| A9 | 14.29 | 24 | 2 | 6 |
| A10 | 18.18 | 36 | 7 | 9 |
>TRINITY_DN129087_c1_g2_i13 from sample A1 / Example spliced isoformCTACACCAAACAAAACCATCATATTGTCTTTTGATTTCGAGGCCGGGGAGCATGGAACCCTCACTCTTACATGGCTCGGAAGTTACCCATATTGTCTTTTGATTTCGAGGCCGGGGAGCATGGAACCCTCACTCTTACATGTCTTGGAAGTTACCGCTTAACATCATATATATATATATATGAGAAGTATAAAACTGGTT
GGCACGTCAACCCATTATTGGAGCCACCACTTTTGAAGGCGATTAAATCAGCGAAGGCGCGGTGGGGTGGACATAGGTTTGGATCTTCCCATATATGTAATAATAATAATAATTATTTGCACCGTCCATGGGGTTCCGGTTTGACCCTTTTGTTCCCAGTCGCCTTCACTATAAAATTCCCTTTCGAAACTCAAAATTCA
GCACAGAAACCGGGAGAAGAATGGACATGGACATGATTTGAGGGAAGGGGTTTATAAGTGAATATAGAAAGAGCAGAGCAAAGAGGGAAGAGGGCACGGGCGCTGCCACTGGCACTGGATCTGGAAGAGAATGGGTGTCCCGGCATTTTATAGATGGTTATCTGACAGGTACCCCATGGTTGTGGTGGATGTCGTAGAAG
AGGAAGCTACTGTGGATGCCACCCAACCCAACCCCAATGGGATCGAGTTTGACAACCTTTATTTGGACATGAATGGAATTATTCATCCATGCTTTCATCCAGAGGACAGGCCTGCGCCGTCAACATATGACGAAGTTTTTAAGAACATGTTTGACTACATAGACCGCCTCTTTTTAATAGTGAGGCCAAGGAAGCTTTTG
TACATGGCAATTGATGGTGTTGCACCAAGGGCTAAGATGAATCAACAACGTTCACGGCGTTTTCGGGCTGCAAAAGATGCAGCTGAAGCAGCCACGGAAGAAGAAAAATTGAGAAAAGAGTTTGTGGCAGAAGGTAAATATATGGTCTTAAAAGAGAAATCAGAAGTCCATGATTCAAATGTCATTACCCCCGGGACAGA
ATTTATGGCCACACTGTCTGTTGCTCTGCAGTACTATGTACATTTGAGATTGAACAACGACCTGGGATGGCAGAAAATAAAGGTTATACTTTCTGATGCAAATGTTCCTGGTGAGGGGGAACACAAAGTTATGTCCTACATTCGTCTCCAAAGAAACCTCCCTGGTTTCAATCCAAATACCAGGCACTGCTTGTATGGTT
TAGATGCAGATTTAATTATGTTGGCATTGGCAACTCATGAAATCCACTTCTCAATTTTAAGAGAGGTCATCACTTTCCCTGGTCAGCAAGAAAAATGCTTCCTTTGTGGCCAGGTGGGTCATTTGGCAGCTGATTGTGAAGGAATTCCAGTTCCAAAACCAGGAGAATTGGATGAGGAGGGCAATGAACAGAGTCCTGTT
CCTAGAAAACCTTATCAGGTTTGCTAGAAAAATTGAAACTTAGAATTGCTGTATTTGCTTTATATTTTGAACGGGAGACATTCTTTCACCCATAGGTTAGGGATTACATTAGAATATGTTTACTGCCATATGCCATTATGCTAATAATTGAGCAGTTTCTCAACATATGGACCTTGCGAGAGTACTTGGAGTATGACATG
AAGATACCAAATCCTCCATTTGAGGTGGACTTTGAACGGCTTGTGGATGATTTCGTCTTTATGTGTTTTTTTGTGGGGAATGATTTCCTTCCACACATGCCTACATTGGAAATTCGTGAGGGTGCAATCAATTTGCTCATGGCTATATACAAGAAAGAATTCAGTGCAATGGGTGGCTATTTGACAGATGCAGGCGAGGT
AATATTGGACAGGGTGGAGCATTTTATTCAGGCTGTTGGAACATACGAGGATAAGATTTTTCAAAAGCGAGCTCATATTCATCAGATTCAGACAGAGAGACGCAAGCGCTCAAAGACGAAGTCAAGGAATGAAGAAAGTCGTGAACCCAATGTTCAGCCTGAATCTATAGTTCCAGTGATTCCATTTAAGGGTGCACGTC
TGGCATGTGCCCCTCATCCATCTCCATATGAATCAGATTCATCTAAACTACCTGCAAAGCTCAGGAGAGTTAGTGAAAATAATGCCAGTATTGCTGCAGCATTAGTGAAGGTTGAAGATGAACTAACTGCTGAAGCTGCAAAGGCGAAAGAAAATGCAGAGGAGCTGAAACTTATGGTGAAAAATGCACTTCGTGAGAAG
TCAGATCTTTTCAATTCTGAAGAACCTGAAAAGGACAAGGTTAAATTAGGAGAGTCTGGATGGAAAGAAAGATACTATTCTGAAAAATTTGAGGCACATACAGAAGAAGCTCGAGAACAAACCAAAAAGGATGCTGTCTTGAAATATACAGAAGGACTTTGTTGGATAATGCACTATTATTATCAAGGAGTGTGCTCATG
GCAGTGGTATTATCCATACCATTATGCTCCCTTTGCCTCTGATCTTACGGGTCTCAGTCAGTTAAAGATTGCATTTAATCTTGGGAGTCCATTCAAGCCATTCAATCAGCTAATGGGAGTTCTTCCTGCTGCGAGTGCAAATGCTCTTCCTGAGCATTACAGGCCATTAATGACTGATCCCAATTCACCTATCATTGACT
TATATCCCACTGATTTTGAAATTGATATGAATGGCAAGCGATATGCCTGGCAGGGTGTTGCTAAGTTACCATTCATTGATGAAGCTCGCCTTCTTGCAGAAATTAGCAAGGTTGAAGGCACATTAACGGAAGAAGAAAGATTGAGAAATAGTGAAAAGTTTGACTTGCTTTTTGTGATTGCAAGTCATTGCTTAGCTCCA
GATACATTTTCTCTCTATAAGCAGTATGCACATCTTACAGTAAATGAGAGAGCTAAAGTCAAAGAAAAGATCAATCCTGATTCCAGTGGTGGATTAAATGGTTACTTCTGTCTCTGTGATGGGGAGGCTTGCCCACCTGTTTTCACTTCACCTGTTAAGGAGATGGAAAACATCATAAACAATCAAGTTCTGTCTGTAAT
TTACAAGTGCCCGTCTGTGCATAAACACATTCCAAGGCTCGTGGATGGGGTCATGATGCCAAAGAAGATTGTATCTGCGCAGGATGTAAGGACAGAAGCTTTATGGCATGAAGATACTGGTCGTAGGCACCAAAATCAAGATAGGCCACCTGTTCACGGAGCTATCTCAGGCCCTCAGCTTGGAGCAGCTGCTCATCGTC
TTGTCATCAACAGTCTGCAGTTAAAGAGCAATAGTTCAGGACGAACTAGTCATATGGTGCAGCAACCGGTGCAGGGGATGTCTTCTTCTTTCCAAAGTAGTAAAAATCATATGAGCCCAAAACCAAGACCAGCTGGCCCTCAAGGTTATGAAAAAGGTTTTGATTTGTCTGTGGGGAAGGTTTCTAATGGTGGAATGTAT
AAATCACAACAAGATGCAGGGTCTGCTGCATTAGTGGATGACCATATTAGTTCCCAGTCAACTCCAAATAAAAAAGCCAATAAGAAAGGGGAACATGGTAGAAGAGATAACTCACAGCAGCAGCGCAATGGTGAGATGCACAGTAGTGACTATGTTAGTTCCCAGTCAACTCCAATTCAGAAAGCCAATAAGAAAAGGGG
ACGTGGTAGAAGAGATTACTCACAGCAGCAGCGCAATGGTGAGATTCACGGTAATGATCACCAACAGCA
>TRINITY_DN129087_c1_g2_i19 from sample A1 / Example unspliced isoform:CTACACCAAACAAAACCATCATATTGTCTTTTGATTTCGAGGCCGGGGAGCATGGAACCCTCACTCTTACATGGCTCGGAAGTTACCCATATTGTCTTTTGATTTCGAGGCCGGGGAGCATGGAACCCTCACTCTTACATGTCTTGGAAGTTACCGCTTAACATCATATATATATATATATGAGAAGTATAAAACTGGTT
GGCACGTCAACCCATTATTGGAGCCACCACTTTTGAAGGCGATTAAATCAGCGAAGGCGCGGTGGGGTGGACATAGGTTTGGATCTTCCCATATATGTAATAATAATAATAATTATTTGCACCGTCCATGGGGTTCCGGTTTGACCCTTTTGTTCCCAGTCGCCTTCACTATAAAATTCCCTTTCGAAACTCAAAATTCA
GCACAGAAACCGGGAGAAGAATGGACATGGACATGATTTGAGGGAAGGGGTTTATAAGTGAATATAGAAAGAGCAGAGCAAAGAGGGAAGAGGGCACGGGCGCTGCCACTGGCACTGGATCTGGAAGAGAATGGGTGTCCCGGCATTTTATAGATGGTTATCTGACAGGTACCCCATGGTTGTGGTGGATGTCGTAGAAG
AGGAAGCTACTGTGGATGCCACCCAACCCAACCCCAATGGGATCGAGTTTGACAACCTTTATTTGGACATGAATGGAATTATTCATCCATGCTTTCATCCAGAGGACAGGCCTGCGCCGTCAACATATGACGAAGTTTTTAAGAACATGTTTGACTACATAGACCGCCTCTTTTTAATAGTGAGGCCAAGGAAGCTTTTG
TACATGGCAATTGgtaagtgagttaataacctcaagtgctgcacctttactatttgacatgaaatatttatattcacatcttttggtaaactttactaggtatggcattcaaaacctatattcatgccttttttaaaagggggagtcatgttttattgcttaatatttatgtttctttagcacaacttggtaaatgctga
ttatgattgtacaatgaccaaagattactctgtctccatttgaagactgaaaattgttaagattgagcaccgactttctgtaattgtagATGGTGTTGCACCAAGGGCTAAGATGAATCAACAACGTTCACGGCGTTTTCGGGCTGCAAAAGATGCAGCTGAAGCAGCCACGGAAGAAGAAAAATTGAGAAAAGAGTTTG
TGGCAGAAGGTAAATATATGGTCTTAAAAGAGAAATCAGAAGTCCATGATTCAAATGTCATTACCCCCGGGACAGAATTTATGGCCACACTGTCTGTTGCTCTGCAGTACTATGTACATTTGAGATTGAACAACGACCTGGGATGGCAGAAAATAAAGGTTATACTTTCTGATGCAAATGTTCCTGGTGAGGGGGAACAC
AAAGTTATGTCCTACATTCGTCTCCAAAGAAACCTCCCTGGTTTCAATCCAAATACCAGGCACTGCTTGTATGGTTTAGATGCAGATTTAATTATGTTGGCATTGGCAACTCATGAAATCCACTTCTCAATTTTAAGAGAGGTCATCACTTTCCCTGGTCAGCAAGAAAAATGCTTCCTTTGTGGCCAGGTGGGTCATTT
GGCAGCTGATTGTGAAGGAATTCCAGTTCCAAAACCAGGAGAATTGGATGAGGAGGGCAATGAACAGAGTCCTGTTCCTAGAAAACCTTATCAGGTTTGCTAGAAAAATTGAAACTTAGAATTGCTGTATTTGCTTTATATTTTGAACGGGAGACATTCTTTCACCCATAGGTTAGGGATTACATTAGAATATGTTTACT
GCCATATGCCATTATGCTAATAATTGAGCAG
Intron 8 GTTTGTATGT ... GTTTTTACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 19.94 | 502 | 170 | 80 |
| A2 | 18.52 | 429 | 136 | 59 |
| A3 | 19.89 | 447 | 138 | 84 |
| A4 | 18.92 | 450 | 158 | 52 |
| A5 | 20.5 | 159 | 59 | 23 |
| A6 | 20.18 | 89 | 33 | 12 |
| A7 | 16.21 | 416 | 111 | 50 |
| A8 | 18.14 | 185 | 58 | 24 |
| A9 | 18.34 | 314 | 91 | 50 |
| A10 | 17.32 | 432 | 139 | 42 |
>TRINITY_DN129087_c1_g2_i18 from sample A1 / Example spliced isoformCTCATTTATGTTTGCGTCATGCTGTCGGCGAGATATTTTCACTCTCGGTGAATACAATAGAGAGGATATCTATACAAGATGTCTATACAAGATATCAAGACACCGCAACGAAACCCTCGGGCGGAGGCAGGGCTTCGATTTTTTGCTTGTTTTGGCAGGTCTTCGTAGCAATTCCTTACTGAGTGAACAACGATTTGTAG
TTGCTGTCGGCCCGGATAACGCCATTGTTGTATAAGCAAGCTTTTAGGCGTCCTAAAAGAAACATTTGTTTCAGAGTTTTCTCTCGGAGAGCATCTGCAAGGGTTCTTTTGCCGGGGAAATATGGGTGTTCCTGCATTTTACAGATGGTTGGCTGATAAATATCCTCTAATAGTAATGGACGTTACGGAGGAAGAGCCCG
TCGAGATCAATGGCGTTACTATTCCAGTCGATACCAGCAAGCCTAATCCTAATAATATGGAGTTCGATAATCTTTACCTGGACATGAACGGGATTATTCATCCCTGCTTTCATCCCGAAGACCGGCCTTCACCTACAACTTATGATGAAGTCTTTAAGGCTATGTTTGATTATATAGACCGGCTCTTTGTGATTGTACGA
CCCAGGAAGCTTTTATACATGGCAATTGATGGTGTTGCACCAAGAGCTAAGATGAACCAGCAGCGTTCACGACGTTTCAGGGCAGCAAAAGAGGCAGATGATTTGGCAGCCGAAGAGGAAAGATTAAGAAAACAGTTTGAGGAAGAAGGTAGGATTTTAGCTCCTAAAGTGAAGTCTGAAGCATGCGACTCAAATATAAT
TACTCCTGGGACAGAATTTATGGCGACACTGTCAATTGCTCTTCAATATTACATACACATGAGATTAAACTATGATCCAGGCTGGCGAAATATTAAGGTCATTCTCTCTGATGCAAATGTTCCGGGTGAAGGTGAGCACAAAATCATGACATACATTCGCCTGCAAAGAAATCTTGCAGGTTTTGATCCAAATACAAGAC
ATTGCTTATATGGGCTGGATGCTGATCTAATCATGTTAGCATTGTCTACTCACGAGGTGCACTTCTCAATTTTGAGAGAGATTGTGGTAACGCCTGGGCAACAAGACAAATGCTTCCTTTGTGGTCAGGTTGGTCATCTTGCAACTGCATGTGAAGGAAAGCCAAAAAGAAAGCAAGGAGATTTTGATGAGAAAGGCGGT
GAACTGAATGTTAATCCTAAAAGGCCTTATCAGTTTGTCAACATTTGGGTTTTACGGGAATATTTAGAGTATGATATGAAGATTCCAAAACCTCCAATGGAGATTGATTTTGAACGGCTTGTGGATGATTTTGTCTTCATCTGTTTCTTTGTTGGCAATGATTTCCTTCCACACATGCCTACATTGGAAATTCGTGAGGG
TGCAATCAATTTGCTCATGGCTATATACAAGAAAGAATTCAGTGCAATGGGTGGCTATTTGACAGATGCAGGCGAGGTAATATTGGACAGGGTGGAGCATTTTATTCAGGCTGTTGGAACATACGAGGATAAGATTTTTCAAAAGCGAGCTCATATTCATCAGATTCAGACAGAGAGACGCAAGCGCTCAAAGACGAAGT
CAAGGAATGAAGAAAGTCGTGAACCCAATGTTCAGCCTGAATCTATAGTTCCAGTGATTCCATTTAAGGGTGCACGTCTGGCATGTGCCCCTCATCCATCTCCATATGAATCAGATTCATCTAAACTACCTGCAAAGCTCAGGAGAGTTAGTGAAAATAATGCCAGTATTGCTGCAGCATTAGTGAAGGTTGAAGATGAA
CTAACTGCTGAAGCTGCAAAGGCGAAAGAAAATGCAGAGGAGCTGAAACTTATGGTGAAAAATGCACTTCGTGAGAAGTCAGATCTTTTCAATTCTGAAGAACCTGAAAAGGACAAGGTTAAATTAGGAGAGTCTGGATGGAAAGAAAGATACTATTCTGAAAAATTTGAGGCACATACAGAAGAAGCTCGAGAACAAAC
CAAAAAGGATGCTGTCTTGAAATATACAGAAGGACTTTGTTGGATAATGCACTATTATTATCAAGGAGTGTGCTCATGGCAGTGGTATTATCCATACCATTATGCTCCCTTTGCCTCTGATCTTACGGGTCTCAGTCAGTTAAAGATTGCATTTAATCTTGGGAGTCCATTCAAGCCATTCAATCAGCTAATGGGAGTTC
TTCCTGCTGCGAGGTAATATTACTAATATGACCTTGTTAATTTGTTGCTATATTACTCTAACTTTTTTTCATGTATCAAAATGTCATTATCTAAGACATCGATGTGGTTACAGTGCAAATGCTCTTCCTGAGCATTACAGGCCATTAATGACTGATCCCAATTCACCTATCATTGACTTATATCCCACTGATTTTGAAAT
TGATATGAATGGCAAGCGATATGCCTGGCAGGGTGTTGCTAAGTTACCATTCATTGATGAAGCTCGCCTTCTTGCAGAAATTAGCAAGGTTGAAGGCACATTAACGGAAGAAGAAAGATTGAGAAATAGTGAAAAGTTTGACTTGCTTTTTGTGATTGCAAGTCATTGCTTAGCTCCAGATACATTTTCTCTCTATAAGC
AGTATGCACATCTTACAGTAAATGAGAGAGCTAAAGTCAAAGAAAAGATCAATCCTGATTCCAGTGGTGGATTAAATGGTTACTTCTGTCTCTGTGATGGGGAGGCTTGCCCACCTGTTTTCACTTCACCTGTTAAGGAGATGGAAAACATCATAAACAATCAAGTTCTGTCTGTAATTTACAAGTGCCCGTCTGTGCAT
AAACACATTCCAAGGCTCGTGGATGGGGTCATGATGCCAAAGAAGATTGTATCTGCGCAGGATGTAAGGACAGAAGCTTTATGGCATGAAGATACTGGTCGTAGGCACCAAAATCAAGATAGGCCACCTGTTCACGGAGCTATCTCAGGCCCTCAGCTTGGAGCAGCTGCTCATCGTCTTGTCATCAACAGTCTGCAGTT
AAAGAGCAATAGTTCAGGACGAACTAGTCATATGGTGCAGCAACCGGTGCAGGGGATGTCTTCTTCTTTCCAAAGTAGTAAAAATCATATGAGCCCAAAACCAAGACCAGCTGGCCCTCAAGGTTATGAAAAAGGTTTTGATTTGTCTGTGGGGAAGGTTTCTAATGGTGGAATGTATAAATCACAACAAGATGCAGGGT
CTGCTGCATTAGTGGATGACCATATTAGTTCCCAGTCAACTCCAAATAAAAAAGCCAATAAGAAAGGGGAACATGGTAGAAGAGATAACTCACAGCAGCAGCGCAATGGTGAGATGCACAGTAGTGACTATGTTAGTTCCCAGTCAACTCCAATTCAGAAAGCCAATAAGAAAAGGGGACGTGGTAGAAGAGATTACTCA
CAGCAGCAGCGCAATGGTGAGATTCACGGTAATGATCACCAACAGCAGCGCAATGGTGAGATACACGGTAATGATCACCAACAGCAGCACAATGGTGTAATACATGCTAATAGCTACCGGCAACAGCCAGACACACACTATCAAACATATCAAACTAATACTGAACGACAATATTACCAGCTCCCATTTGTGAATGCAAA
TGCTCAACAGTATCCACCCAGAATACCACCACCATCACAGGGAATCACAAGAGGGAGCAGTCTTGTGCAAATGCATTCAATATCTCAGTTTGCAACAATCAATGGTTACCCTATAAATCCTCAACGCACAACAGTCAATGGTTACCCTTTAAATAACAGGTTATATGACAACAATCAAGGCAGGGCGAGGTCGGCAATGG
TGCCAGGAAACATGTACTATAATCGTTATTAATCTTTAGTTTTTTGATACAGGGATTCTGTCCTCTTTCCCCATCTTTGTTTTTAATCGATTTTGCAATTTCCTTGTGAAACATCTTGATGACTGGCATTAGTTGAGGTGTACAATAGAAGCGATAGAAGCAATAGAAGCATTCTTTGATTATATTGATCTTTTATAGCT
TATTTGGAGGTTTATTATGGCTTGACTGTTCAAAATTGGAAATGTGGGGCCTTGTATTTGTTGAGAGTTGTTTTTCCTGCTCCGTATCTTTCTGCATAATGGCAGAGAGCATAAACGACTTTGATAATTATACAACATATTTCGTAACAGTACTGTATTTCCCGGAAGTGACTATGCATAAAATTATCAGGTCATCCCTT
GAGAGATGTGGACTCTACTCTTGTGGACTTTGAGTCTACTCTATAACAAAAATAATACCGTTACAGTCTTGTTTCATGGATATTATT
>TRINITY_DN129087_c1_g2_i11 from sample A1 / Example unspliced isoform:AGCAAAAGAGGCAGATGATTTGGTGAGTGTGTTAGGAAAAATGGTAATAATATTCAAAAGAGAAGATGTTTATAAGCACATCTAAACAAACTTTCAAGCCGAGAATGAGGTTTAATGTTTTTTCATGCAATTGTCAGGCAGCCGAAGAGGAAAGATTAAGAAAACAGTTTGAGGAAGAAGGTAGGATTTTAGCTCCTAAA
GTGAAGTCTGAAGCATGCGACTCAAATATAATTACTCCTGGGACAGAATTTATGGCGACACTGTCAATTGCTCTTCAATATTACATACACATGAGATTAAACTATGATCCAGGCTGGCGAAATATTAAGGTCATTCTCTCTGATGCAAATGTTCCGGGTGAAGGTGAGCACAAAATCATGACATACATTCGCCTGCAAAG
AAATCTTGCAGGTTTTGATCCAAATACAAGACATTGCTTATATGGGCTGGATGCTGATCTAATCATGTTAGCATTGTCTACTCACGAGGTGCACTTCTCAATTTTGAGAGAGATTGTGGTAACGCCTGGGCAACAAGACAAATGCTTCCTTTGTGGTCAGGTTGGTCATCTTGCAACTGCATGTGAAGGAAAGCCAAAAA
GAAAGCAAGGAGATTTTGATGAGAAAGGCGGTGAACTGAATGTTAATCCTAAAAGGCCTTATCAGGTAAGTTGGTTATAGGTATATTTTTTGAAACTAGGATTTTGGTTATGCACGCTTGGAGGTTTTTTCTTTTTGTCAATGTTGTATGGTTGCATCAATACTAATAACAGTGACATTTGGGTAATGATAATTAAAGCA
AGTTTCAAGCTTATTATATATCATGTGGATGTTTTACTGCTTTTACTATTATTTTTACATCTAACTTGTTTCCGATATCTCAAATATTTGGCAGTTTGTCAACATTTGGGTTTTACGGGAATATTTAGAGTATGATATGAAGATTCCAAAACCTCCAATGGAGATTGATTTTGAACGGCTTGTGGATGATTTTGTCTTCA
TCTGTTTCTTTGTTGGCAATGATTTCCTTCCACACATGCCTACATTGGAAATTCGTGAGgtttgtatgtagagatgttacaactcctatattctatttgaattccttaaatagtcgcttaataaatattatctaaatttatgttctgttctgaaattcatttcagttgaaacgtttggaatatttttatgtccaagctga
ttgttttgttctaacttctaagcatgatgcatttatatgattatctctagtgtgcagacagtttattatagatctgtttttacagGGTGCAATCAATTTGCTCATGGCTATATACAAGAAAGAATTCAGTGCAATGGGTGGCTATTTGACAGATGCAGGCGAGGTAATATTGGACAGGGTGGAGCATTTTATTCAGGCTG
TTGGAACATACGAGGATAAGATTTTTCAAAAGCGAGCTCATATTCAT
Intron 9 GTCTAGACTC ... TGGTTGGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 28.6 | 382 | 3 | 153 |
| A2 | 28.83 | 348 | 3 | 141 |
| A3 | 25.32 | 351 | 0 | 119 |
| A4 | 22.98 | 305 | 11 | 91 |
| A5 | 21.38 | 114 | 4 | 31 |
| A6 | 25 | 249 | 0 | 83 |
| A7 | 26.75 | 923 | 0 | 337 |
| A8 | 24.63 | 808 | 0 | 264 |
| A9 | 25.33 | 746 | 1 | 253 |
| A10 | 26.39 | 809 | 0 | 290 |
>TRINITY_DN106185_c0_g2_i2 from sample A4 / Example spliced isoformGTTTGATTATATAGACCGGCTCTTTGTGATTGTACGACCCAGGAAGCTTTTATACATGGCAATTGATGGTGTTGCACCAAGAGCTAAGATGAACCAGCAGCGTTCACGACGTTTCAGGGCAGCAAAAGAGGCAGATGATTTGGCAGCCGAAGAGGAAAGATTAAGAAAACAGTTTGAGGAAGAAGGTAGGATTTTAGCTC
CTAAAGTGAAGTCTGAAGCATGCGACTCAAATATAATTACTCCTGGGACAGAATTTATGGCGACACTGTCAATTGCTCTTCAATATTACATACACATGAGATTAAACTATGATCCAGGCTGGCGAAATATTAAGGTCATTCTCTCTGATGCAAATGTTCCGGGTGAAGGTGAGCACAAAATCATGACATACATTCGCCTG
CAAAGAAATCTTGCAGGTTTTGATCCAAATACAAGACATTGCTTATATGGGCTGGATGCTGATCTAATCATGTTAGCATTGTCTACTCACGAGGTGCACTTCTCAATTTTGAGAGAGATTGTGGTAACGCCTGGGCAACAAGACAAATGCTTCCTTTGTGGTCAGGTTGGTCATCTTGCAACTGCATGTGAAGGAAAGCC
AAAAAGAAAGCAAGGAGATTTTGATGAGAAAGGCGGTGAACTGAATGTTAATCCTAAAAGGCCTTATCAGGTAAGTTGGTTATAGGTATATTTTTTGAAACTAGGATTTTGGTTATGCACGCTTGGAGGTTTTTTCTTTTTGTCAATGTTGTATGGTTGCATCAATACTAATAACAGTGACATTTGGGTAATGATAATTA
AAGCAAGTTTCAAGCTTATTATATATCATGTGGATGTTTTACTGCTTTTACTATTATTTTTACATCTAACTTGTTTCCGATATCTCAAATATTTGGCAGTTTGTCAACATTTGGGTTTTACGGGAATATTTAGAGTATGATATGAAGATTCCAAAACCTCCAATGGAGATTGATTTTGAACGGCTCGTGGATGATTTTGT
CTTCATCTGTTTCTTTGTTGGCAATGATTTCCTTCCACACATGCCTACATTGGAAATTCGTGAGGGTGCAATCAATTTGCTCATGGCTATATACAAGAAAGAATTCAGTGCAATGGGTGGCTATTTGACAGATGCAGGCGAGGTAATATTGGACAGGGTGGAGCATTTTATTCAGGCTGTTGGAACATACGAGGATAAGA
TTTTTCAAAAGCGAGCTCATATTCATCAGATTCAGACAGAGAGACGCAAGCGTTCAAAGACGAAGTCAAGGAATGAAGAAAGTCGCGAACCCAATGTTCAGCCTGAATCTATAGTTCCAGTGATTCCATTTAAGGGTGCACGTCTGGCATGTGCCCCTCATCCATCTCCATATGAATCAGATTCATCTAAACTACCTGCA
AAGCTCAGGAGAGTTAGTGAAAATAATGCCAGTATTGCTGCAGCATTAGTGAAGGTTGAAGATGAACTAACTGCTGAAGCTGCAAAGGCGAAAGAAAATGCAGAGGAGCTGAAACTTATGGTGAAAAATGCACTTCGTGAGAAGTCAGATCTTTTCAATTCTGAAGAACCTGAAAAGGACAAGGTTAAATTAGGAGAGTC
TGGATGGAAAGAAAGATACTATTCTGAAAAATTTGAGGCACATACAGAAGAAGCTCGAGAACAAACCAAAAAGGATGCTGTCTTGAAATATACAGAAGGACTTTGTTGGATAATGCACTATTATTATCAAGGAGTGTGCTCATGGCAGTGGTATTATCCATACCATTATGCTCCCTTTGCCTCTGATCTTACGGGTCTCA
GTCAGTTAAAGATTGCATTTAATCTTGGGAGTCCATTCAAGCCATTCAATCAGCTAATGGGAGTTCTTCCTGCTGCGAGTGCAAATGCACTTCCTGAGCATTACAGGCCATTAATGACTGATCCCAATTCACCTATCATTGACTTATATCCCACTGATTTTGAAATTGATATGAATGGCAAGCGATATGCCTGGCAGGGT
GTTGCTAAATTACCATTCATTGATGAAGCTCGCCTTCTTGCAGAAATTAGCAAGGTTGAAGGCACATTAACGGAAGAAGAAAGATTGAGAAATAGTGAAAAGTTTGACTTGCTTTTTGTGATTGCAAGTCATTGCTTAGCTCCAGATACATTTTCTCTCTATAAGCAGTATGCACATCTTACAGTAAATGAGAGAGCTAA
AGTCAAAGAAAAGATCAATCCTGATTCCAGTGGTGGATTAAATGGTTACTTCTGTCTCTGTGATGGGGAGGCTTGCCCACCTGTTTTCACTTCACCTGTTAAGGAGATGGAAAACATCATAAACAATCAAGTTCTGTCTGTAATTTACAAGTGCCCGTCTGTGCATAAACACATTCCAAGGCTCGTGGATGGGGTCATGA
TGCCAAAGAAGATTGTATCTGCGCAGGATGTAAGGACAGAAGCTTTATGGCATGAAGATACTGGTCGTAGGCACCAAAATCAAGATAGGCCACCTGTTCACGGAGCTATCTCAGGCCCTCAGCTTGGAGCAGCTGCTCATCGTCTTGTCATCAACAGTCTGCAGTTAAAGAGCAATAGTTCAGGACGAACTAGTCATATG
GTGCAGCAACCGGTGCAGGGGATGTCTTCTTCTTTCCAAAGTAGTAAAAATCATATGAGCCCAAAACCAAGACCAGCTGGCCCTCAAGGTTATGAAAAAGGTTTTGATTTGTCTGTGGGGAAGGTTTCTAATGGTGGAATGTATAAATCACAACAAGATGCAGGGTCTGCTGCATTAGTGGATGACCATATTAGTTCCCA
GTCAACTCCAAATAAAAAAGCCAATAAGAAAGGGGAACATGGTAGAAGAGATAACTCACAGCAGCAGCGCAATGGTGAGATGCACAGTAGTGACTATGTTAGTTCCCAGTCAACTCCAATTCAGAAAGCCAATAAGAAAAGGGGACGTGGTAGAAGAGATTACTCACAGCAGCAGCGCAATGGTGAGATTCACGGTAATG
ATCACCAACAGCAGCGCAATGGTGAGATACACGGTAATGATCACCAACAGCAGCACAATGGTGTAATACATGCTAATAGCTACCGGCAACAGCCAGACACACACTATCAAACATATCAAACTAATACTGAACGACAATATTACCAGCTCCCATTTGTGAATGCAAATGCTCAACAGTATCCACCCAGAATACCACCACCA
TCACAGGGAATCACAAGAGGGAGCAGTCTTGTGCAAATGCATTCAATATCTCAGTTTGCAACAATCAATGGTTACCCTATAAATCCTCAACGCACAACAGTCAATGGTTACCCTTTAAATAACAGGTTATATGACAACAATCAAGGCAGGGCGAGGTCGGCAATGGTGCCAGGAAACATGTACTATAATCGTTATTAATC
TTTAGTTTTTTGATACAGGGATTCTGTCCTCTTTCCCCATCTTTGTTTTTAATCGATTTTGCAATTTCCTTGTGAAACATCTTGATGACTGGCATTAGTTGAGGTGTACAATAGAAGCGATAGAAGCAATAGAAGCATTCTTTGATTATATTGATCTTTTATAGCTTATTTGGAGGTTTATTATGGCTTGACTGTTCAAA
ATTGGAAATGTGGGGCCTTGTATTTGTTGAGAGTTGTTTTTCCTGCTCCGTATCTTTCTGCATAATGGCAGAGAGCATAAACGACTTTGATAATTATACAACATATTTCGTAACAGTACTGTATTTCCCGGAAGTGACTATGCATAAAATTATCAGGTCATCCCTTGAGAGATGTGGACTCTACTCTTGTGGACTTTGAG
TCTACTCTATAACAAAAATAATACCGT
>TRINITY_DN106185_c0_g2_i1 from sample A4 / Example unspliced isoform:CATCATAAACAATCAAGTTCTGTAAGTGGTTAACCTTTATTGTTTGTACATTGTACAATCTTTGAAATTGTTATTCAATTTGTATCAAGTTCTGAATACTTATTTATTAAATGTATTTCAGGTCTGTAATTTACAAGTGCCCGTCTGTGCATAAACACATTCCAAGGCTCGTGGATGGGGTCATGATGCCAAAGAAGgtc
tagactctatgtagataataagcctaatgtgtctttgctctaaaaggatttttgagagttatttttgaactttccagattgattttctttcaattaatcatgtgcagacagcatggtagtttcttgtataatatagactacctgatagtgtctcatagtatctgatcttttctttcaactatacccatgatatcctcttc
ttgaacatttaaaaaagaccctgcttttcttttagcatgtgatacttatattatatctctctgacatttcatactggttggcagATTGTATCTGCGCAGGATGTAAGGACAGAAGCTTTATGGCATGAAGATACTGGTCGTAGGCACCAAAATCAAGATAGGCCACCTGTTCACGGAGCTATCTCAGGCCCTCAGCTTGG
AGCAGCTGCTCATCGTCTTGTCATCAACAGTCTGCAGTTAAAGAGCAATAGTTCAGGACGAACTAGTCATATGGTGCAGCAACCGGTGCAGGGGATGTCTTCTTCTTTCCAAAGTAGTAAAAATCATATGAGCCCAAAACCAAGACCAGCTGGCCCTCAAGGTTATGAAAAAGGTTTTGATTTGTCTGTGGGGAAGGTTT
CTAATGGTGGAATGTATAAATCACAACAAGATGCAGGGTCTGCTGCATTAGTGGATGACCATATTAGTTCCCAGTCAACTCCAAATAAAAAAGCCAATAAGAAAGGGGAACATGGTAGAAGAGATAACTCACAGCAGCAGCGCAATGGTGAGATGCACAGTAGTGACTATGTTAGTTCCCAGTCAACTCCAATTCAGAAA
GCCAATAAGAAAAGGGGACGTGGTAGAAGAGATTACTCACAGCAGCAGCGCAATGGTGAGATTCACGGTAATGATCACCAACAGCAGCGCAATGGTGAGATACACGGTAATGATCACCAACAGCAGCACAATGGTGTAATACATGCTAATAGCTACCGGCAACAGCCAGACACACACTATCAAACATATCAAACTAATAC
TGAACGACAATATTACCAGCTCCCATTTGTGAATGCAAATGCTCAACAGTATCCACCCAGAATACCACCACCATCACAGGGAATCACAAGAGGGAGCAGTCTTGTGCAAATGCATTCAATATCTCAGTTTGCAACAATCAATGGTTACCCTATAAATCCTCAACGCACAACAGTCAATGGTTACCCTTTAAATAACAGGT
TATATGACAACAATCAAGGCAGGGCGAGGTCGGCAATGGTGCCAGGAAACATGTACTATAATCGTTATTAATCTTTAGTTTTTTGATACAGGGATTCTGTCCTCTTTCCCCATCTTTGTTTTTAATCGATTTTGCAATTTCCTTGTGAAACATCTTGATGACTGGCATTAGTTGAGGTGTACAATAGAAGCGATAGAAGC
AATAGAAGCATTCTTTGATTATATTGATCTTTTATAGCTTATTTGGAGGTTTATTATGGCTTGACTGTTCAAAATTGGAAATGTGGGGCCTTGTATTTGTTGAGAGTTGTTTTTCCTGCTCCGTATCTTTCTGCATAATGGCAGAGAGCATAAACGACTTTGATAATTATACAACATATTTCGTAACAGTACTGTATTTC
CCGGAAGTGACTATGCATAAAATTATCAGGTCATCCCTTGAGAGATGTGGACTCTACTCTTGTGGACTTTGAGTCTACTCTATAACAAAAATAATACCGT