sp|Q588V7|TEB_ARATH ----> Helicase and polymerase-containing protein TEBICHI
Intron 1 GCTGTTGGCA ... TCTAGTAGAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 66.15 | 11 | 29 | 14 |
| A2 | 66.67 | 6 | 17 | 7 |
| A3 | 59.26 | 11 | 24 | 8 |
| A4 | 71.88 | 9 | 22 | 24 |
| A5 | 62.5 | 3 | 9 | 1 |
| A6 | -1 | 0 | 0 | 0 |
| A7 | 60 | 3 | 5 | 4 |
| A8 | -1 | 0 | 0 | 0 |
| A9 | 60 | 1 | 3 | 0 |
| A10 | 33.33 | 2 | 2 | 0 |
>TRINITY_DN126567_c2_g1_i26 from sample A1 / Example spliced isoformTGGGTGTTGATTTCTATTTGATCTAAGAGCCCTCTGGGCTCTTTTTAATGTACAGGTTGAAGAGCGGGAGATAGTTGAGACCTGTTATAGGCAAGGAAATGTGAGGGTCTTAACAGCTACATCTACTTTAGCTGCTGGTGTCAATTTACCGGCCAGAAGGGTGATCTTTCGGCAGCCTAGGATTGGACGAGATTTCATAG
ATGGAACAAGATACAAGCAGATGGCTGGACGGGCAGGGCGGGCTGGAATAGATACAAAAGGAGAAAGTATAATAATTTGCAAACCTGAAGAAGTCAAAAGAATAACAACACTGGTAAATGAAAGCTGTCCCCCCCTTCATTCTTGTCTCGCAGAAGATAAAAATGGAATGAAACGTGCTATTTTAGAAGTTGTGGCGGGT
GGCATTGTGCAAACAGCAAATGATATTCATCGCTATGTGAGGTGCACACTATTGAACTCAACGCAGCCATTTGAAGATGTGGTAAAATCAGCACAAGATTCGCTTTACTGGCTATGCCATGCAAAATTTCTGGAATGGGATCAACAAACTCAAATCTATTCTACAACACCTTTAGGGCGCGCAGCATTTGGGAGTTCTCT
AAGTCCAGAAGAATCAATGATTGTGCTTGAAGATCTTGCTAGAGCAAGAGAAGGCATTGTGCTTGCCTCAGATCTTCATTTACTGTATGAGGTGACACCTATCAATGTTGATATAGAACCAGATTGGGAACTATACTATCAGAGATTTATGGAATTGTCCTCTCTTGATCAGGAAGTACCTCTGACAGATGTTTGTGAAG
CTTTCAAAGTACCGAGGGGCATGGTCCAGGCTCTGCAAGAAAATGCTGGAAG
>TRINITY_DN126567_c2_g1_i2 from sample A1 / Example unspliced isoform:TGGGTGTTGATTTCTATTTGATCTAAGAGCCCTCTGGGCTCTTTTTAATGTACAGGTTGAAGAGCGGGAGATAGTTGAGACCTGTTATAGGCAAGGAAATGTGAGGGTCTTAACAGCTACATCTACTTTAGCTGCTGGTGTCAATTTACCGGCCAGAAGGGTGATCTTTCGGCAGCCTAGGATTGGACGAGATTTCATAG
ATGGAACAAGATACAAGCAGATGGCTGGACGGGCAGGGCGGGCTGGAATAGATACAAAAGGAGAAAGTATAATAATTTGCAAACCTGAAGAAGTCAAAAGAATAACAACACTGGTAAATGAAAGCTGTCCCCCCCTTCATTCTTGTCTCGCAGAAGATAAAAATGGAATGAAACGTGCTATTTTAGAAGTTGTGGCGGGT
GGCATTGTGCAAACAGCAAATGATATTCATCGCTATGTGAGGTGCACACTATTGAACTCAACGCAGCCATTTGAAGATGTGGTAAAATCAGCACAAGATTCGCTTTACTGGCTATGCCATGCAAAATTTCTGGAATGGGATCAACAAACTCAAATCTATTCTACAACACCTTTAGGGCGCGCAGCATTTGGGAGTTCTCT
AAGTCCAGAAGAATCAATGATTGTGCTTGAAGATCTTGCTAGAGCAAGAGAAGGCATTGTGCTTGCCTCAGATCTTCATTTACTGTATGAGGTGACACCTATCAATGTTGATATAGAACCAGATTGGGAACTATACTATCAGAGATTTATGGAATTGTCCTCTCTTGATCAGgctgttggcaatagagttggggtaatgg
aaccgtttttaatgcgcatggcacatggggctccagttatgcaattgcgtgataaatcctctagaaatggaaaaagtcctcgtgataaaagttctcgatcatttggaaattcacgaagcaggaatactgctattccaacagagcagacacttcgtgtgtgccgacgcttctatgttgcactcatgttgggacgtctagta
gagGAAGTACCTCTGACAGATGTTTGTGAAGCTTTCAAAGTACCGAGGGGCATGGTCCAGGCTCTGCAAGAAAATGCTGGAAG
Intron 2 GTTGGGTACT ... TGAAATGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 40.45 | 53 | 36 | 15 |
| A2 | 44.64 | 31 | 25 | 1 |
| A3 | 41.56 | 45 | 32 | 6 |
| A4 | 46.67 | 24 | 21 | 9 |
| A5 | 40 | 12 | 8 | 0 |
| A6 | 50 | 5 | 5 | 0 |
| A7 | 40 | 9 | 6 | 1 |
| A8 | -1 | 0 | 0 | 0 |
| A9 | 33.33 | 2 | 1 | 0 |
| A10 | 42.86 | 12 | 9 | 0 |
>TRINITY_DN126567_c2_g1_i31 from sample A1 / Example spliced isoformAGAAAAACCATATTTATAGAAGTCGAGTTACTTGTACCGCCTTTTTTCCAGCCATATCCTTCATTTCAAATTCCTGTCTCCTCTTTGCAGGAGAAAAGAGGTCCCGCGAGTAAATTATGCAGGCGATCCAAATCGGGCAGAGATAGCAAACAAGACGTCGAGAGATCGAGTCTCGCAGAATGAGTTCCAGTCAGCGAAAT
ACAAAGCTGGACCAGTTTTTCCCTTCAAAAAAGATAAAGTGTCTATCCCCATCTGGTAAGATAGTCAAGACCAATAAGGATGTAAAATCTCCTAATACGAAAGGTAGCTTGGATGGCTACCTAGTAAAGTCTATTGATGGACTTCCTTCACCGGATAATACATCATCAGCTCAATATGGCTTAAAGAGAGGAGATGCAGC
GAAGCAAAATTTGACTTTTGAGGTTAAACAACCTTCAACCACTCTGAATAAGGCGCTGCCAGAGAATGCTTTTATATTTCAACAAGGCTCAAGTGTTTCTCAGTTAGCCTCCTCATCTCCTGTGAAGGGTCACAAAAATGAACAAGTAAAAAAATCAGAACAAGGAAAAGAGGTGTACCATGGTTCACTCTTGGTGGAAG
AAAATACAAAGGTGTCTGATGAGAAACATGGTTCTACTGCAGTATTTTTTTCGGAGGCTGAGGATTCATCTACCTACCTTTGTGTGAAAGATCAGATTTCTAGCTCCAATGGTAATAGCAAAGAACTTAGCCAGTTTGCAAATAGCTTTCTCGCAATGTGTTGCAGTGGACTTGTGTCAAAAGAGACCCCTTTATTGGAG
GAGTCTTTATCATCACCAAAGTTGAATAAAAACAAGAGGTCTGGATGCCCATCTCCTCTGTCTGCAAATAATGCTATTCTGAAGAAAAAGCAGTGTGGTGTAGTTGGTAATAAGTTGATTGAGATATCAATGGAAGGCCCTAAGATTTCTCAAAAGGGGTCTGAAGATGTGAGTAATACTGACAATGGTGCATTTACAAT
GCGTTTACCTGAGTTAGAAGGTTTGCCAGTAGGTGGGTTGGTAGGTGCATGTAAAGAAATTGAGAATAGGCAAACTGATGGCAATGGACAGCTTGTTGCTCAACCCATGAGCGTGGATTGTAGGGATTCACTGGATGTTAATGCTGAATGTTCAGTATCTCAGCCAATGCAAAATTCTGAGAATATGTCTGAAGTCGATG
GTCAAACCAAGATGCCTGTTTTTTCCACAATTGGAACTCCACAATTTCTGAGAAAATGTTGCCTAACACCTGAAATTAGGAGAGAGCGGACATCTCTATGTACTCCTAAAATTGTTTCTATTAAGGGTTCTGCCATTAAAACTCCAGGATGGGTGTACCGTAGCTCATTCTCTCCGGGAGATGAATTCTGGAATGAAGCG
ATACAGGTAGCAGATGGCTTAGTTGCCGTTAAAACTGATGATCCTGTGGAAGATCATTGTAAAGTTTCTATATGTACACCTGGGCCGGATGAACAAGGAAACCTGCAATCTGATAAGGGAGCTTACTTTAAGAGTCACGACTTGAAGATCCAGAATGACAATGGGAGTTTTTCCTCGAAAATGATTGAACAACCACATTT
ATATAGAAACAATGCTGAACAGACAGAGTTAGAAACTCTTCACCAAATTGTTGCATCTTCTAAAGTGCTTGTGTCTGGAGAATGCATAGTAAACAAGGACAGGATGAATGCTGGTAGGGTGGGTTTGTCTAAAACATTTAACACAGGAAGTTCACCATTGCCTGTCAGGCATTTTGACTTCCAATGTGAGGATCATATCA
TTATTGATAATACTGGAGATACTCAGAAGGGTAAACATTCAAAGGATGATACAAATATGCCAGATTCAGAGACTCGAGGAGATATAGAGAACTCTATGTTTGCAATTGGTAATGTTAAAGTCTCTGAGGAAATTATAGGACATGTGGATCTACATGCTAACACTAGCAAAGCACTCAAAGAAAGTGTGACAGAAGTCGGC
GATGCCTCTACTAGTAAGCATAACAATGTTGGTACACCATCAAGTTATTCTACTTCGAAAGACTTTCTAGAGCTGAGCTATTGGCTTCCTCAAAAGTTATGTGATGTTTATGCAAAGAAGGGCATTACCAAGCTTTATCCCTGGCAGGTTGAATGCTTGCAATTGGATGGTGTGCTTGAAAGAAAGAATCTTGTTTATTG
TGCATCTACAAGCGCTGGGAAGAGTCTTGTTGCTGAGGTGGTGTTGTTGAGAAGGGTTATATCAAGCGGGAAGAAGGCATTGCTTGTATTGCCTTATGTATCTCTTTGTGCTGAGAAGACTGAACATCTTGAAACACTTTTGGAGCCATTAAACAAGCGTGTTCGTAGCTTTTATGGAGTCCAAGGCAGTGGAACACTAC
CTAAGGACACTTCTGTTGCTGTTTGTACGATAGAGAAGGCAAATTCACTTGTAAATAGATTATTGGAGGAGGGTCGTCTTGCTGAAGTTGGAGTTATGGTGATAGATGAACTCCACATGCGCTGGGAAGAGTCTTGTTGCTGAGGTGGTGTTGTTGAGAAGGGTTATATCAAGCGGGAAGAAGGCATTGCTTGTATTGCC
TTATGTATCTCTTTGTGCTGAGAAGACTGAACATCTTGAAACACTTTTGGAGCCATTAAACAAGCGTGTTCGTAGCTTTTATGGAGTCCAAGGCAGTGGAACACTACCTAAGGACACTTCTGTTGCTGTTTGTACGATAGAGAAGGCAAATTCACTTGTAAATAGATTATTGGAGGAGGGTCGTCTTGCTGAAGTTGGAG
TTATGGTGATAGATGAACTCCACATGGTTGGAGATCAAAGTAGAGGATATCTGTTGGAGCTTATGTTGACAAAGTTGCTCTATGCAGCAGGGGAAGGTGGTTCAGGGAGCTCTAATGGTGATAGCCCAGGCAATAGCAGTGGGAAAACTGACCCTAGCATTGGAATGCAAATAGTTGGTATGAGTGCTACAATGCCAAAT
GTAGCCGCTGTTGCTAATTGGCTTCAGTGTGTGATTTGATATTCTTGGACATTCAAATATATTCATGCAGGCTGCCTTATATGAGACTGAATTTAGGCCAATTCCTTTGTCGGAGTACATAAAGGTTGGTAATATAGTTTACAGCAAATCTATGGAAGTGGTGCGTACGATTCGCAAGGGTGCTGATCTTGGAGGAAAAG
ATCCAGACCATGTTGTTGAGTTGTGCAATGAGGTTGTTCAAGGTGGGCATTCTGTTCTTGTATTTTGCTCAAGCCGTAAGGCATGCGAGGCAACTGCAAGGCATATTGCAAAGTTCATTAAAGAATTTGCTTCTCAAAATGGACAGTCCAGCTTGCAATGGAATGATGCATTGTCTGTTGTTGAAGAATTACGAAAGTCT
CCAGCAGGGTTGGACCCTACCTTGGCTGAGACTCTACCATCTCGTGTGGCTTTTCATCATGCAGGCCTTACGGTTGAAGAGCGGGAGATAGTTGAGACCTGTTATAGGCAAGGAAATGTGAGGGTCTTAACAGCTACATCTACTTTAGCTGCTGGTGTCAATTTACCGGCCAGAAGGGTGATCTTTCGGCAGCCTAGGAT
TGGACGAGATTTCATAGATGGAACAAGATACAAGCAGATGGCTGGACGGGCAGGGCGGGCTGGAATAGATACAAAAGGAGAAAGTATAATAATTTGCAAACCTGAAGAAGTCAAAAGAATAACAACACTGGTAAATGAAAGCTGTCCCCCCCTTCATTCTTGTCTCGCAGAAGATAAAAATGGAATGAAACGTGCTATTT
TAGAAGTTGTGGCGGGTGGCATTGTGCAAACAGCAAATGATATTCATCGCTATGTGAGGTGCACACTATTGAACTCAACGCAGCCATTTGAAGATGTGGTAAAATCAGCACAAGATTCGCTTTACTGGCTATGCCATGCAAAATTTCTGGAATGGGATCAACAAACTCAAATCTATTCTACAACACCTTTAGGGCGCGCA
GCATTTGGGAGTTCTCTAAGTCCAGAAGAATCAATGATTGTGCTTGAAGATCTTGCTAGAGCAAGAGAAGGCATTGTGCTTGCCTCAGATCTTCATTTACTGTATGAGGTGACACCTATCAATGTTGATATAGAACCAGATTGGGAACTATACTATCAGAGATTTATGGAATTGTCCTCTCTTGATCAGGCTGTTGGCAA
TAGAGTTGGGGTAATGGAACCGTTTTTAATGCGCATGGCACATGGGGCTCCAGTTATGCAATTGCGTGATAAATCCTCTAGAAATGGAAAAAGTCCTCGTGATAAAAGTTCTCGATCATTTGGAAATTCACGAAGCAGGAATACTGCTATTCCAACAGAGCAGACACTTCGTGTGTGCCGACGCTTCTATGTTGCACTCA
TGTTGGGACGTCTAGTAGAGGTTAGTTGCTTTACTTGACTAATTTTTGTGTTAAACAAATGGATAGTTGTTTTGTACATGCTTCAATGTTTTCTTGGAAAATTGGTGCTCACTTTAAATGTGAATAGTTCATGCCAATTGATTTTTGACTCAATATATCATTCTGGTTGGTAAAGTATTTGACATTATTGATGGCACAAG
CTCAAGCAAGGCTGGTTATAGATAAGTACTGGTGAACAAGTTGCATGTGGTAGCAACGTTGCTGTTTGTAGACCTGGAGCTTGTAATTTTTGACAGTGGTATATGTTTTATGCTCTAATACCTAGAGAACCCAAAATTTTATGTTTTGACAGTGGTATATGTTTGCTTATGAATTCAAATGCCAAAGTTTTAATTGCCAT
ATTCAACAATTGCAGAAAAAATAAGAAAGTAATGCAAGAAGGATTAAATTTAGTTTGTATCTCTAAGTTTCTAGGATTAAATTCGGTCACAGAAACCAATTTGGATTGGAGCTGAAAGGTTCATGTTGGGTAATACTTGCTGCCGTGTTTAATTTCCCATTACCAATTTGTTTTGCTTCTTATAGTGTGATCTCTTGATC
AATGTTGCACGACTCGGACTCGGCAAAGACTCGGCTGGCATGTGACAAGTCGACTCGGGAAAGACTCGGGACAGACTTGGGAGACGG
>TRINITY_DN126567_c2_g1_i21 from sample A1 / Example unspliced isoform:AGAAAAACCATATTTATAGAAGTCGAGTTACTTGTACCGCCTTTTTTCCAGCCATATCCTTCATTTCAAATTCCTGTCTCCTCTTTGCAGGAGAAAAGAGGTCCCGCGAGTAAATTATGCAGGCGATCCAAATCGGGCAGAGATAGCAAACAAGACGTCGAGAGATCGAGTCTCGCAGAATGAGTTCCAGTCAGCGAAAT
ACAAAGCTGGACCAGTTTTTCCCTTCAAAAAAGATAAAGTGTCTATCCCCATCTGGTAAGATAGTCAAGACCAATAAGGATGTAAAATCTCCTAATACGAAAGGTAGCTTGGATGGCTACCTAGTAAAGTCTATTGATGGACTTCCTTCACCGGATAATACATCATCAGCTCAATATGGCTTAAAGAGAGGAGATGCAGC
GAAGCAAAATTTGACTTTTGAGGTTAAACAACCTTCAACCACTCTGAATAAGGCGCTGCCAGAGAATGCTTTTATATTTCAACAAGGCTCAAGTGTTTCTCAGTTAGCCTCCTCATCTCCTGTGAAGGGTCACAAAAATGAACAAGTAAAAAAATCAGAACAAGGAAAAGAGGTGTACCATGGTTCACTCTTGGTGGAAG
AAAATACAAAGGTGTCTGATGAGAAACATGGTTCTACTGCAGTATTTTTTTCGGAGGCTGAGGATTCATCTACCTACCTTTGTGTGAAAGATCAGATTTCTAGCTCCAATGGTAATAGCAAAGAACTTAGCCAGTTTGCAAATAGCTTTCTCGCAATGTGTTGCAGTGGACTTGTGTCAAAAGAGACCCCTTTATTGGAG
GAGTCTTTATCATCACCAAAGTTGAATAAAAACAAGAGGTCTGGATGCCCATCTCCTCTGTCTGCAAATAATGCTATTCTGAAGAAAAAGCAGTGTGGTGTAGTTGGTAATAAGTTGATTGAGATATCAATGGAAGGCCCTAAGATTTCTCAAAAGGGGTCTGAAGATGTGAGTAATACTGACAATGGTGCATTTACAAT
GCGTTTACCTGAGTTAGAAGGTTTGCCAGTAGGTGGGTTGGTAGGTGCATGTAAAGAAATTGAGAATAGGCAAACTGATGGCAATGGACAGCTTGTTGCTCAACCCATGAGCGTGGATTGTAGGGATTCACTGGATGTTAATGCTGAATGTTCAGTATCTCAGCCAATGCAAAATTCTGAGAATATGTCTGAAGTCGATG
GTCAAACCAAGATGCCTGTTTTTTCCACAATTGGAACTCCACAATTTCTGAGAAAATGTTGCCTAACACCTGAAATTAGGAGAGAGCGGACATCTCTATGTACTCCTAAAATTGTTTCTATTAAGGGTTCTGCCATTAAAACTCCAGGATGGGTGTACCGTAGCTCATTCTCTCCGGGAGATGAATTCTGGAATGAAGCG
ATACAGGTAGCAGATGGCTTAGTTGCCGTTAAAACTGATGATCCTGTGGAAGATCATTGTAAAGTTTCTATATGTACACCTGGGCCGGATGAACAAGGAAACCTGCAATCTGATAAGGGAGCTTACTTTAAGAGTCACGACTTGAAGATCCAGAATGACAATGGGAGTTTTTCCTCGAAAATGATTGAACAACCACATTT
ATATAGAAACAATGCTGAACAGACAGAGTTAGAAACTCTTCACCAAATTGTTGCATCTTCTAAAGTGCTTGTGTCTGGAGAATGCATAGTAAACAAGGACAGGATGAATGCTGGTAGGGTGGGTTTGTCTAAAACATTTAACACAGGAAGTTCACCATTGCCTGTCAGGCATTTTGACTTCCAATGTGAGGATCATATCA
TTATTGATAATACTGGAGATACTCAGAAGGGTAAACATTCAAAGGATGATACAAATATGCCAGATTCAGAGACTCGAGGAGATATAGAGAACTCTATGTTTGCAATTGGTAATGTTAAAGTCTCTGAGGAAATTATAGGACATGTGGATCTACATGCTAACACTAGCAAAGCACTCAAAGAAAGTGTGACAGAAGTCGGC
GATGCCTCTACTAGTAAGCATAACAATGTTGGTACACCATCAAGTTATTCTACTTCGAAAGACTTTCTAGAGCTGAGCTATTGGCTTCCTCAAAAGTTATGTGATGTTTATGCAAAGAAGGGCATTACCAAGCTTTATCCCTGGCAGGTTGAATGCTTGCAATTGGATGGTGTGCTTGAAAGAAAGAATCTTGTTTATTG
TGCATCTACAAGCGCTGGGAAGAGTCTTGTTGCTGAGGTGGTGTTGTTGAGAAGGGTTATATCAAGCGGGAAGAAGGCATTGCTTGTATTGCCTTATGTATCTCTTTGTGCTGAGAAGACTGAACATCTTGAAACACTTTTGGAGCCATTAAACAAGCGTGTTCGTAGCTTTTATGGAGTCCAAGGCAGTGGAACACTAC
CTAAGGACACTTCTGTTGCTGTTTGTACGATAGAGAAGGCAAATTCACTTGTAAATAGATTATTGGAGGAGGGTCGTCTTGCTGAAGTTGGAGTTATGGTGATAGATGAACTCCACATGCGCTGGGAAGAGTCTTGTTGCTGAGGTGGTGTTGTTGAGAAGGGTTATATCAAGCGGGAAGAAGGCATTGCTTGTATTGCC
TTATGTATCTCTTTGTGCTGAGAAGACTGAACATCTTGAAACACTTTTGGAGCCATTAAACAAGCGTGTTCGTAGCTTTTATGGAGTCCAAGGCAGTGGAACACTACCTAAGGACACTTCTGTTGCTGTTTGTACGATAGAGAAGGCAAATTCACTTGTAAATAGATTATTGGAGGAGGGTCGTCTTGCTGAAGTTGGAG
TTATGGTGATAGATGAACTCCACATGGTTGGAGATCAAAGTAGAGGATATCTGTTGGAGCTTATGTTGACAAAGTTGCTCTATGCAGCAGGGGAAGGTGGTTCAGGGAGCTCTAATGGTGATAGCCCAGGCAATAGCAGTGGGAAAACTGACCCTAGCATTGGAATGCAAATAGTTGGTATGAGTGCTACAATGCCAAAT
GTAGCCGCTGTTGCTAATTGGCTTCAGgttgggtactgcttttgtttgatgaatgcttgcatatccgtgagaaaatatggagttcaaattagtattatataaaattaatgaagatatatagtttgtttctatcatatggtggtatttatctatgtgctgaatgggtagtaggaaaaggttatgtggtctatgaggtgtaa
gttatatttagtaatgtttgttttgtatgttgaaatgcagTGTGTGATTTGATATTCTTGGACATTCAAATATATTCATGCAGGCTGCCTTATATGAGACTGAATTTAGGCCAATTCCTTTGTCGGAGTACATAAAGGTTGGTAATATAGTTTACAGCAAATCTATGGAAGTGGTGCGTACGATTCGCAAGGGTGCTGAT
CTTGGAGGAAAAGATCCAGACCATGTTGTTGAGTTGTGCAATGAGGTTGTTCAAGGTGGGCATTCTGTTCTTGTATTTTGCTCAAGCCGTAAGGCATGCGAGGCAACTGCAAGGCATATTGCAAAGTTCATTAAAGAATTTGCTTCTCAAAATGGACAGTCCAGCTTGCAATGGAATGATGCATTGTCTGTTGTTGAAGA
ATTACGAAAGTCTCCAGCAGGGTTGGACCCTACCTTGGCTGAGACTCTACCATCTCGTGTGGCTTTTCATCATGCAGGCCTTACGGTTGAAGAGCGGGAGATAGTTGAGACCTGTTATAGGCAAGGAAATGTGAGGGTCTTAACAGCTACATCTACTTTAGCTGCTGGTGTCAATTTACCGGCCAGAAGGGTGATCTTTC
GGCAGCCTAGGATTGGACGAGATTTCATAGATGGAACAAGATACAAGCAGATGGCTGGACGGGCAGGGCGGGCTGGAATAGATACAAAAGGAGAAAGTATAATAATTTGCAAACCTGAAGAAGTCAAAAGAATAACAACACTGGTAAATGAAAGCTGTCCCCCCCTTCATTCTTGTCTCGCAGAAGATAAAAATGGAATG
AAACGTGCTATTTTAGAAGTTGTGGCGGGTGGCATTGTGCAAACAGCAAATGATATTCATCGCTATGTGAGGTGCACACTATTGAACTCAACGCAGCCATTTGAAGATGTGGTAAAATCAGCACAAGATTCGCTTTACTGGCTATGCCATGCAAAATTTCTGGAATGGGATCAACAAACTCAAATCTATTCTACAACACC
TTTAGGGCGCGCAGCATTTGGGAGTTCTCTAAGTCCAGAAGAATCAATGATTGTGCTTGAAGATCTTGCTAGAGCAAGAGAAGGCATTGTGCTTGCCTCAGATCTTCATTTACTGTATGAGGTGACACCTATCAATGTTGATATAGAACCAGATTGGGAACTATACTATCAGAGATTTATGGAATTGTCCTCTCTTGATC
AGGTTGCGATGCATACTTGTATTCCTCTTTATTTCTGTCTTATCGTTTCAACATTGTTAACGAGCGTGCTGGTATAGGCTTCATCTGGTTGTTTACTTGGTATTTTTATGTTGAACTAATCAGGTAAAGAGGAAATGTTGAACTGTAAAAAATGATCTAACCAGAATCATGGCATTCATTTTCAATATTCAGAAACTGCA
ATTCAGAACCCAGAAAATGGGTGCGTCAGGGTTCTTCCAACGTGTGATCTTCACTAAAACAATCAATTTTTAAGTAAAAAATGCAAAAAATTAGAAGGAAATGGTGGGCCCATCCAACCTAATCGTTCCTTTGGTAATCACTCTCATGCACTCAAAACAAACAACAACCTCTCATTTTCACCATTTCATTTCGAG
Intron 3 GTGAAACAGT ... TGTTTGACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 33.33 | 30 | 1 | 15 |
| A2 | 31.25 | 44 | 1 | 20 |
| A3 | 20 | 52 | 4 | 13 |
| A4 | 36.84 | 36 | 1 | 21 |
| A5 | 29.73 | 26 | 0 | 11 |
| A6 | 0 | 1.8 | 0 | 0 |
| A7 | 0 | 4 | 0 | 0 |
| A8 | 25 | 3 | 0 | 1 |
| A9 | 0 | 4 | 0 | 0 |
| A10 | 40 | 6 | 0 | 4 |
>TRINITY_DN126567_c2_g1_i31 from sample A1 / Example spliced isoformAGAAAAACCATATTTATAGAAGTCGAGTTACTTGTACCGCCTTTTTTCCAGCCATATCCTTCATTTCAAATTCCTGTCTCCTCTTTGCAGGAGAAAAGAGGTCCCGCGAGTAAATTATGCAGGCGATCCAAATCGGGCAGAGATAGCAAACAAGACGTCGAGAGATCGAGTCTCGCAGAATGAGTTCCAGTCAGCGAAAT
ACAAAGCTGGACCAGTTTTTCCCTTCAAAAAAGATAAAGTGTCTATCCCCATCTGGTAAGATAGTCAAGACCAATAAGGATGTAAAATCTCCTAATACGAAAGGTAGCTTGGATGGCTACCTAGTAAAGTCTATTGATGGACTTCCTTCACCGGATAATACATCATCAGCTCAATATGGCTTAAAGAGAGGAGATGCAGC
GAAGCAAAATTTGACTTTTGAGGTTAAACAACCTTCAACCACTCTGAATAAGGCGCTGCCAGAGAATGCTTTTATATTTCAACAAGGCTCAAGTGTTTCTCAGTTAGCCTCCTCATCTCCTGTGAAGGGTCACAAAAATGAACAAGTAAAAAAATCAGAACAAGGAAAAGAGGTGTACCATGGTTCACTCTTGGTGGAAG
AAAATACAAAGGTGTCTGATGAGAAACATGGTTCTACTGCAGTATTTTTTTCGGAGGCTGAGGATTCATCTACCTACCTTTGTGTGAAAGATCAGATTTCTAGCTCCAATGGTAATAGCAAAGAACTTAGCCAGTTTGCAAATAGCTTTCTCGCAATGTGTTGCAGTGGACTTGTGTCAAAAGAGACCCCTTTATTGGAG
GAGTCTTTATCATCACCAAAGTTGAATAAAAACAAGAGGTCTGGATGCCCATCTCCTCTGTCTGCAAATAATGCTATTCTGAAGAAAAAGCAGTGTGGTGTAGTTGGTAATAAGTTGATTGAGATATCAATGGAAGGCCCTAAGATTTCTCAAAAGGGGTCTGAAGATGTGAGTAATACTGACAATGGTGCATTTACAAT
GCGTTTACCTGAGTTAGAAGGTTTGCCAGTAGGTGGGTTGGTAGGTGCATGTAAAGAAATTGAGAATAGGCAAACTGATGGCAATGGACAGCTTGTTGCTCAACCCATGAGCGTGGATTGTAGGGATTCACTGGATGTTAATGCTGAATGTTCAGTATCTCAGCCAATGCAAAATTCTGAGAATATGTCTGAAGTCGATG
GTCAAACCAAGATGCCTGTTTTTTCCACAATTGGAACTCCACAATTTCTGAGAAAATGTTGCCTAACACCTGAAATTAGGAGAGAGCGGACATCTCTATGTACTCCTAAAATTGTTTCTATTAAGGGTTCTGCCATTAAAACTCCAGGATGGGTGTACCGTAGCTCATTCTCTCCGGGAGATGAATTCTGGAATGAAGCG
ATACAGGTAGCAGATGGCTTAGTTGCCGTTAAAACTGATGATCCTGTGGAAGATCATTGTAAAGTTTCTATATGTACACCTGGGCCGGATGAACAAGGAAACCTGCAATCTGATAAGGGAGCTTACTTTAAGAGTCACGACTTGAAGATCCAGAATGACAATGGGAGTTTTTCCTCGAAAATGATTGAACAACCACATTT
ATATAGAAACAATGCTGAACAGACAGAGTTAGAAACTCTTCACCAAATTGTTGCATCTTCTAAAGTGCTTGTGTCTGGAGAATGCATAGTAAACAAGGACAGGATGAATGCTGGTAGGGTGGGTTTGTCTAAAACATTTAACACAGGAAGTTCACCATTGCCTGTCAGGCATTTTGACTTCCAATGTGAGGATCATATCA
TTATTGATAATACTGGAGATACTCAGAAGGGTAAACATTCAAAGGATGATACAAATATGCCAGATTCAGAGACTCGAGGAGATATAGAGAACTCTATGTTTGCAATTGGTAATGTTAAAGTCTCTGAGGAAATTATAGGACATGTGGATCTACATGCTAACACTAGCAAAGCACTCAAAGAAAGTGTGACAGAAGTCGGC
GATGCCTCTACTAGTAAGCATAACAATGTTGGTACACCATCAAGTTATTCTACTTCGAAAGACTTTCTAGAGCTGAGCTATTGGCTTCCTCAAAAGTTATGTGATGTTTATGCAAAGAAGGGCATTACCAAGCTTTATCCCTGGCAGGTTGAATGCTTGCAATTGGATGGTGTGCTTGAAAGAAAGAATCTTGTTTATTG
TGCATCTACAAGCGCTGGGAAGAGTCTTGTTGCTGAGGTGGTGTTGTTGAGAAGGGTTATATCAAGCGGGAAGAAGGCATTGCTTGTATTGCCTTATGTATCTCTTTGTGCTGAGAAGACTGAACATCTTGAAACACTTTTGGAGCCATTAAACAAGCGTGTTCGTAGCTTTTATGGAGTCCAAGGCAGTGGAACACTAC
CTAAGGACACTTCTGTTGCTGTTTGTACGATAGAGAAGGCAAATTCACTTGTAAATAGATTATTGGAGGAGGGTCGTCTTGCTGAAGTTGGAGTTATGGTGATAGATGAACTCCACATGCGCTGGGAAGAGTCTTGTTGCTGAGGTGGTGTTGTTGAGAAGGGTTATATCAAGCGGGAAGAAGGCATTGCTTGTATTGCC
TTATGTATCTCTTTGTGCTGAGAAGACTGAACATCTTGAAACACTTTTGGAGCCATTAAACAAGCGTGTTCGTAGCTTTTATGGAGTCCAAGGCAGTGGAACACTACCTAAGGACACTTCTGTTGCTGTTTGTACGATAGAGAAGGCAAATTCACTTGTAAATAGATTATTGGAGGAGGGTCGTCTTGCTGAAGTTGGAG
TTATGGTGATAGATGAACTCCACATGGTTGGAGATCAAAGTAGAGGATATCTGTTGGAGCTTATGTTGACAAAGTTGCTCTATGCAGCAGGGGAAGGTGGTTCAGGGAGCTCTAATGGTGATAGCCCAGGCAATAGCAGTGGGAAAACTGACCCTAGCATTGGAATGCAAATAGTTGGTATGAGTGCTACAATGCCAAAT
GTAGCCGCTGTTGCTAATTGGCTTCAGTGTGTGATTTGATATTCTTGGACATTCAAATATATTCATGCAGGCTGCCTTATATGAGACTGAATTTAGGCCAATTCCTTTGTCGGAGTACATAAAGGTTGGTAATATAGTTTACAGCAAATCTATGGAAGTGGTGCGTACGATTCGCAAGGGTGCTGATCTTGGAGGAAAAG
ATCCAGACCATGTTGTTGAGTTGTGCAATGAGGTTGTTCAAGGTGGGCATTCTGTTCTTGTATTTTGCTCAAGCCGTAAGGCATGCGAGGCAACTGCAAGGCATATTGCAAAGTTCATTAAAGAATTTGCTTCTCAAAATGGACAGTCCAGCTTGCAATGGAATGATGCATTGTCTGTTGTTGAAGAATTACGAAAGTCT
CCAGCAGGGTTGGACCCTACCTTGGCTGAGACTCTACCATCTCGTGTGGCTTTTCATCATGCAGGCCTTACGGTTGAAGAGCGGGAGATAGTTGAGACCTGTTATAGGCAAGGAAATGTGAGGGTCTTAACAGCTACATCTACTTTAGCTGCTGGTGTCAATTTACCGGCCAGAAGGGTGATCTTTCGGCAGCCTAGGAT
TGGACGAGATTTCATAGATGGAACAAGATACAAGCAGATGGCTGGACGGGCAGGGCGGGCTGGAATAGATACAAAAGGAGAAAGTATAATAATTTGCAAACCTGAAGAAGTCAAAAGAATAACAACACTGGTAAATGAAAGCTGTCCCCCCCTTCATTCTTGTCTCGCAGAAGATAAAAATGGAATGAAACGTGCTATTT
TAGAAGTTGTGGCGGGTGGCATTGTGCAAACAGCAAATGATATTCATCGCTATGTGAGGTGCACACTATTGAACTCAACGCAGCCATTTGAAGATGTGGTAAAATCAGCACAAGATTCGCTTTACTGGCTATGCCATGCAAAATTTCTGGAATGGGATCAACAAACTCAAATCTATTCTACAACACCTTTAGGGCGCGCA
GCATTTGGGAGTTCTCTAAGTCCAGAAGAATCAATGATTGTGCTTGAAGATCTTGCTAGAGCAAGAGAAGGCATTGTGCTTGCCTCAGATCTTCATTTACTGTATGAGGTGACACCTATCAATGTTGATATAGAACCAGATTGGGAACTATACTATCAGAGATTTATGGAATTGTCCTCTCTTGATCAGGCTGTTGGCAA
TAGAGTTGGGGTAATGGAACCGTTTTTAATGCGCATGGCACATGGGGCTCCAGTTATGCAATTGCGTGATAAATCCTCTAGAAATGGAAAAAGTCCTCGTGATAAAAGTTCTCGATCATTTGGAAATTCACGAAGCAGGAATACTGCTATTCCAACAGAGCAGACACTTCGTGTGTGCCGACGCTTCTATGTTGCACTCA
TGTTGGGACGTCTAGTAGAGGTTAGTTGCTTTACTTGACTAATTTTTGTGTTAAACAAATGGATAGTTGTTTTGTACATGCTTCAATGTTTTCTTGGAAAATTGGTGCTCACTTTAAATGTGAATAGTTCATGCCAATTGATTTTTGACTCAATATATCATTCTGGTTGGTAAAGTATTTGACATTATTGATGGCACAAG
CTCAAGCAAGGCTGGTTATAGATAAGTACTGGTGAACAAGTTGCATGTGGTAGCAACGTTGCTGTTTGTAGACCTGGAGCTTGTAATTTTTGACAGTGGTATATGTTTTATGCTCTAATACCTAGAGAACCCAAAATTTTATGTTTTGACAGTGGTATATGTTTGCTTATGAATTCAAATGCCAAAGTTTTAATTGCCAT
ATTCAACAATTGCAGAAAAAATAAGAAAGTAATGCAAGAAGGATTAAATTTAGTTTGTATCTCTAAGTTTCTAGGATTAAATTCGGTCACAGAAACCAATTTGGATTGGAGCTGAAAGGTTCATGTTGGGTAATACTTGCTGCCGTGTTTAATTTCCCATTACCAATTTGTTTTGCTTCTTATAGTGTGATCTCTTGATC
AATGTTGCACGACTCGGACTCGGCAAAGACTCGGCTGGCATGTGACAAGTCGACTCGGGAAAGACTCGGGACAGACTTGGGAGACGG
>TRINITY_DN126567_c2_g1_i10 from sample A1 / Example unspliced isoform:GTTGTTGAGTTGTGCAATGAGgtgaaacagtatttttgtggatttcattctgactgtttcttagagtaagacagtgcatctattttttatgaataattattgcatcttgtcttaaatatatggcttgaaattcttgtttgacagGTTGTTCAAGGTGGGCATTCTGTTCTTGTATTTTGCTCAAGCCGTAAGGCATGCGA
GGCAACTGCAAGGCATATTGCAAAGTTCATTAAAGAATTTGCTTCTCAAAATGGACAGTCCAGCTTGCAATGGAATGATGCATTGTCTGTTGTTGAAGAATTACGAAAGTCTCCAGCAGGGTTGGACCCTACCTTGGCTGAGACTCTACCATCTCGTGTGGCTTTTCATCATGCAGGCCTTACGGTATGGACAGATGTAT
CTATCTGTTA
Intron 4 GTAAAATGTC ... GTTGATGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 26.11 | 58 | 30 | 11 |
| A2 | 24.32 | 42 | 20 | 7 |
| A3 | 17.42 | 64 | 15 | 12 |
| A4 | 24.32 | 42 | 14 | 13 |
| A5 | 14.89 | 20 | 5 | 2 |
| A6 | 100 | 0 | 1 | 0 |
| A7 | 0 | 5 | 0 | 0 |
| A8 | 11.11 | 4 | 0 | 1 |
| A9 | -1 | 0 | 0 | 0 |
| A10 | 7.69 | 6 | 0 | 1 |
>TRINITY_DN126567_c2_g1_i8 from sample A1 / Example spliced isoformAGAAAAACCATATTTATAGAAGTCGAGTTACTTGTACCGCCTTTTTTCCAGCCATATCCTTCATTTCAAATTCCTGTCTCCTCTTTGCAGGAGAAAAGAGGTCCCGCGAGTAAATTATGCAGGCGATCCAAATCGGGCAGAGATAGCAAACAAGACGTCGAGAGATCGAGTCTCGCAGAATGAGTTCCAGTCAGCGAAAT
ACAAAGCTGGACCAGTTTTTCCCTTCAAAAAAGATAAAGTGTCTATCCCCATCTGGTAAGATAGTCAAGACCAATAAGGATGTAAAATCTCCTAATACGAAAGGTAGCTTGGATGGCTACCTAGTAAAGTCTATTGATGGACTTCCTTCACCGGATAATACATCATCAGCTCAATATGGCTTAAAGAGAGGAGATGCAGC
GAAGCAAAATTTGACTTTTGAGGTTAAACAACCTTCAACCACTCTGAATAAGGCGCTGCCAGAGAATGCTTTTATATTTCAACAAGGCTCAAGTGTTTCTCAGTTAGCCTCCTCATCTCCTGTGAAGGGTCACAAAAATGAACAAGTAAAAAAATCAGAACAAGGAAAAGAGGTGTACCATGGTTCACTCTTGGTGGAAG
AAAATACAAAGGTGTCTGATGAGAAACATGGTTCTACTGCAGTATTTTTTTCGGAGGCTGAGGATTCATCTACCTACCTTTGTGTGAAAGATCAGATTTCTAGCTCCAATGGTAATAGCAAAGAACTTAGCCAGTTTGCAAATAGCTTTCTCGCAATGTGTTGCAGTGGACTTGTGTCAAAAGAGACCCCTTTATTGGAG
GAGTCTTTATCATCACCAAAGTTGAATAAAAACAAGAGGTCTGGATGCCCATCTCCTCTGTCTGCAAATAATGCTATTCTGAAGAAAAAGCAGTGTGGTGTAGTTGGTAATAAGTTGATTGAGATATCAATGGAAGGCCCTAAGATTTCTCAAAAGGGGTCTGAAGATGTGAGTAATACTGACAATGGTGCATTTACAAT
GCGTTTACCTGAGTTAGAAGGTTTGCCAGTAGGTGGGTTGGTAGGTGCATGTAAAGAAATTGAGAATAGGCAAACTGATGGCAATGGACAGCTTGTTGCTCAACCCATGAGCGTGGATTGTAGGGATTCACTGGATGTTAATGCTGAATGTTCAGTATCTCAGCCAATGCAAAATTCTGAGAATATGTCTGAAGTCGATG
GTCAAACCAAGATGCCTGTTTTTTCCACAATTGGAACTCCACAATTTCTGAGAAAATGTTGCCTAACACCTGAAATTAGGAGAGAGCGGACATCTCTATGTACTCCTAAAATTGTTTCTATTAAGGGTTCTGCCATTAAAACTCCAGGATGGGTGTACCGTAGCTCATTCTCTCCGGGAGATGAATTCTGGAATGAAGCG
ATACAGGTAGCAGATGGCTTAGTTGCCGTTAAAACTGATGATCCTGTGGAAGATCATTGTAAAGTTTCTATATGTACACCTGGGCCGGATGAACAAGGAAACCTGCAATCTGATAAGGGAGCTTACTTTAAGAGTCACGACTTGAAGATCCAGAATGACAATGGGAGTTTTTCCTCGAAAATGATTGAACAACCACATTT
ATATAGAAACAATGCTGAACAGACAGAGTTAGAAACTCTTCACCAAATTGTTGCATCTTCTAAAGTGCTTGTGTCTGGAGAATGCATAGTAAACAAGGACAGGATGAATGCTGGTAGGGTGGGTTTGTCTAAAACATTTAACACAGGAAGTTCACCATTGCCTGTCAGGCATTTTGACTTCCAATGTGAGGATCATATCA
TTATTGATAATACTGGAGATACTCAGAAGGGTAAACATTCAAAGGATGATACAAATATGCCAGATTCAGAGACTCGAGGAGATATAGAGAACTCTATGTTTGCAATTGGTAATGTTAAAGTCTCTGAGGAAATTATAGGACATGTGGATCTACATGCTAACACTAGCAAAGCACTCAAAGAAAGTGTGACAGAAGTCGGC
GATGCCTCTACTAGTAAGCATAACAATGTTGGTACACCATCAAGTTATTCTACTTCGAAAGACTTTCTAGAGCTGAGCTATTGGCTTCCTCAAAAGTTATGTGATGTTTATGCAAAGAAGGGCATTACCAAGCTTTATCCCTGGCAGGTTGAATGCTTGCAATTGGATGGTGTGCTTGAAAGAAAGAATCTTGTTTATTG
TGCATCTACAAGCGCTGGGAAGAGTCTTGTTGCTGAGGTGGTGTTGTTGAGAAGGGTTATATCAAGCGGGAAGAAGGCATTGCTTGTATTGCCTTATGTATCTCTTTGTGCTGAGAAGGTACAGTATTTTATATACATGTTCTTCTTTCTTGTTTAACATTTAGTCTTCCTGTTACTGTAATACAAATGATCATTATAAG
AACTGGAGAAGCACGGAGGTGGTGTTGTTGAGAAGGGTTATATCAAGCGGGAAGAAGGCATTGCTTGTATTGCCTTATGTATCTCTTTGTGCTGAGAAGACTGAACATCTTGAAACACTTTTGGAGCCATTAAACAAGCGTGTTCGTAGCTTTTATGGAGTCCAAGGCAGTGGAACACTACCTAAGGACACTTCTGTTGC
TGTTTGTACGATAGAGAAGGCAAATTCACTTGTAAATAGATTATTGGAGGAGGGTCGTCTTGCTGAAGTTGGAGTTATGGTGATAGATGAACTCCACATGGTTGGAGATCAAAGTAGAGGATATCTGTTGGAGCTTATGTTGACAAAGTTGCTCTATGCAGCAGGGGAAGGTGGTTCAGGGAGCTCTAATGGTGATAGCC
CAGGCAATAGCAGTGGGAAAACTGACCCTAGCATTGGAATGCAAATAGTTGGTATGAGTGCTACAATGCCAAATGTAGCCGCTGTTGCTAATTGGCTTCAG
>TRINITY_DN126567_c2_g1_i17 from sample A1 / Example unspliced isoform:AGAAAAACCATATTTATAGAAGTCGAGTTACTTGTACCGCCTTTTTTCCAGCCATATCCTTCATTTCAAATTCCTGTCTCCTCTTTGCAGGAGAAAAGAGGTCCCGCGAGTAAATTATGCAGGCGATCCAAATCGGGCAGAGATAGCAAACAAGACGTCGAGAGATCGAGTCTCGCAGAATGAGTTCCAGTCAGCGAAAT
ACAAAGCTGGACCAGTTTTTCCCTTCAAAAAAGATAAAGTGTCTATCCCCATCTGGTAAGATAGTCAAGACCAATAAGGATGTAAAATCTCCTAATACGAAAGGTAGCTTGGATGGCTACCTAGTAAAGTCTATTGATGGACTTCCTTCACCGGATAATACATCATCAGCTCAATATGGCTTAAAGAGAGGAGATGCAGC
GAAGCAAAATTTGACTTTTGAGGTTAAACAACCTTCAACCACTCTGAATAAGGCGCTGCCAGAGAATGCTTTTATATTTCAACAAGGCTCAAGTGTTTCTCAGTTAGCCTCCTCATCTCCTGTGAAGGGTCACAAAAATGAACAAGTAAAAAAATCAGAACAAGGAAAAGAGGTGTACCATGGTTCACTCTTGGTGGAAG
AAAATACAAAGGTGTCTGATGAGAAACATGGTTCTACTGCAGTATTTTTTTCGGAGGCTGAGGATTCATCTACCTACCTTTGTGTGAAAGATCAGATTTCTAGCTCCAATGGTAATAGCAAAGAACTTAGCCAGTTTGCAAATAGCTTTCTCGCAATGTGTTGCAGTGGACTTGTGTCAAAAGAGACCCCTTTATTGGAG
GAGTCTTTATCATCACCAAAGTTGAATAAAAACAAGAGGTCTGGATGCCCATCTCCTCTGTCTGCAAATAATGCTATTCTGAAGAAAAAGCAGTGTGGTGTAGTTGGTAATAAGTTGATTGAGATATCAATGGAAGGCCCTAAGATTTCTCAAAAGGGGTCTGAAGATGTGAGTAATACTGACAATGGTGCATTTACAAT
GCGTTTACCTGAGTTAGAAGGTTTGCCAGTAGGTGGGTTGGTAGGTGCATGTAAAGAAATTGAGAATAGGCAAACTGATGGCAATGGACAGCTTGTTGCTCAACCCATGAGCGTGGATTGTAGGGATTCACTGGATGTTAATGCTGAATGTTCAGTATCTCAGCCAATGCAAAATTCTGAGAATATGTCTGAAGTCGATG
GTCAAACCAAGATGCCTGTTTTTTCCACAATTGGAACTCCACAATTTCTGAGAAAATGTTGCCTAACACCTGAAATTAGGAGAGAGCGGACATCTCTATGTACTCCTAAAATTGTTTCTATTAAGGGTTCTGCCATTAAAACTCCAGGATGGGTGTACCGTAGCTCATTCTCTCCGGGAGATGAATTCTGGAATGAAGCG
ATACAGGTAGCAGATGGCTTAGTTGCCGTTAAAACTGATGATCCTGTGGAAGATCATTGTAAAGTTTCTATATGTACACCTGGGCCGGATGAACAAGGAAACCTGCAATCTGATAAGGGAGCTTACTTTAAGAGTCACGACTTGAAGATCCAGAATGACAATGGGAGTTTTTCCTCGAAAATGATTGAACAACCACATTT
ATATAGAAACAATGCTGAACAGACAGAGTTAGAAACTCTTCACCAAATTGTTGCATCTTCTAAAGTGCTTGTGTCTGGAGAATGCATAGTAAACAAGGACAGGATGAATGCTGGTAGGGTGGGTTTGTCTAAAACATTTAACACAGGAAGTTCACCATTGCCTGTCAGGCATTTTGACTTCCAATGTGAGGATCATATCA
TTATTGATAATACTGGAGgtaaaatgtctttcagtaacgtgtaattggtatcttgcagtccctacttaatccaattctcaaaatgtagtagcattggataaatatgcagtgatttgatatgaaagtttgaagaaatgtgcactgagaatgcttaatgatgtctcaaaatgttcacagaattccccaaacaccaaactgaa
taaaattaatgtatttgttgatgcagATACTCAGAAGGGTAAACATTCAAAGGATGATACAAATATGCCAGATTCAGAGACTCGAGGAGATATAGAGAACTCTATGTTTGCAATTGGTAATGTTAAAGTCTCTGAGGAAATTATAGGACATGTGGATCTACATGCTAACACTAGCAAAGCACTCAAAGAAAGTGTGACAG
AAGTCGGCGATGCCTCTACTAGTAAGCATAACAATGTTGGTACACCATCAAGTTATTCTACTTCGAAAGACTTTCTAGAGCTGAGCTATTGGCTTCCTCAAAAGTTATGTGATGTTTATGCAAAGAAGGGCATTACCAAGCTTTATCCCTGGCAGGTTGAATGCTTGCAATTGGATGGTGTGCTTGAAAGAAAGAATCTT
GTTTATTGTGCATCTACAAGCGCTGGGAAGAGTCTTGTTGCTGAGGTGGTGTTGTTGAGAAGGGTTATATCAAGCGGGAAGAAGGCATTGCTTGTATTGCCTTATGTATCTCTTTGTGCTGAGAAGACTGAACATCTTGAAACACTTTTGGAGCCATTAAACAAGCGTGTTCGTAGCTTTTATGGAGTCCAAGGCAGTGG
AACACTACCTAAGGACACTTCTGTTGCTGTTTGTACGATAGAGAAGGCAAATTCACTTGTAAATAGATTATTGGAGGAGGGTCGTCTTGCTGAAGTTGGAGTTATGGTGATAGATGAACTCCACATGCGCTGGGAAGAGTCTTGTTGCTGAGGTGGTGTTGTTGAGAAGGGTTATATCAAGCGGGAAGAAGGCATTGCTT
GTATTGCCTTATGTATCTCTTTGTGCTGAGAAGACTGAACATCTTGAAACACTTTTGGAGCCATTAAACAAGCGTGTTCGTAGCTTTTATGGAGTCCAAGGCAGTGGAACACTACCTAAGGACACTTCTGTTGCTGTTTGTACGATAGAGAAGGCAAATTCACTTGTAAATAGATTATTGGAGGAGGGTCGTCTTGCTGA
AGTTGGAGTTATGGTGATAGATGAACTCCACATGGTTGGAGATCAAAGTAGAGGATATCTGTTGGAGCTTATGTTGACAAAGTTGCTCTATGCAGCAGGGGAAGGTGGTTCAGGGAGCTCTAATGGTGATAGCCCAGGCAATAGCAGTGGGAAAACTGACCCTAGCATTGGAATGCAAATAGTTGGTATGAGTGCTACAA
TGCCAAATGTAGCCGCTGTTGCTAATTGGCTTCAGGCTGCCTTATATGAGACTGAATTTAGGCCAATTCCTTTGTCGGAGTACATAAAGGTTGGTAATATAGTTTACAGCAAATCTATGGAAGTGGTGCGTACGATTCGCAAGGGTGCTGATCTTGGAGGAAAAGATCCAGACCATGTTGTTGAGTTGTGCAATGAGGTT
GTTCAAGGTGGGCATTCTGTTCTTGTATTTTGCTCAAGCCGTAAGGCATGCGAGGCAACTGCAAGGCATATTGCAAAGTTCATTAAAGAATTTGCTTCTCAAAATGGACAGTCCAGCTTGCAATGGAATGATGCATTGTCTGTTGTTGAAGAATTACGAAAGTCTCCAGCAGGGTTGGACCCTACCTTGGCTGAGACTCT
ACCATCTCGTGTGGCTTTTCATCATGCAGGCCTTACGGTTGAAGAGCGGGAGATAGTTGAGACCTGTTATAGGCAAGGAAATGTGAGGGTCTTAACAGCTACATCTACTTTAGCTGCTGGTGTCAATTTACCGGCCAGAAGGGTGATCTTTCGGCAGCCTAGGATTGGACGAGATTTCATAGATGGAACAAGATACAAGC
AGATGGCTGGACGGGCAGGGCGGGCTGGAATAGATACAAAAGGAGAAAGTATAATAATTTGCAAACCTGAAGAAGTCAAAAGAATAACAACACTGGTAAATGAAAGCTGTCCCCCCCTTCATTCTTGTCTCGCAGAAGATAAAAATGGAATGAAACGTGCTATTTTAGAAGTTGTGGCGGGTGGCATTGTGCAAACAGCA
AATGATATTCATCGCTATGTGAGGTGCACACTATTGAACTCAACGCAGCCATTTGAAGATGTGGTAAAATCAGCACAAGATTCGCTTTACTGGCTATGCCATGCAAAATTTCTGGAATGGGATCAACAAACTCAAATCTATTCTACAACACCTTTAGGGCGCGCAGCATTTGGGAGTTCTCTAAGTCCAGAAGAATCAAT
GATTGTGCTTGAAGATCTTGCTAGAGCAAGAGAAGGCATTGTGCTTGCCTCAGATCTTCATTTACTGTATGAGGTGACACCTATCAATGTTGATATAGAACCAGATTGGGAACTATACTATCAGAGATTTATGGAATTGTCCTCTCTTGATCAGGCTGTTGGCAATAGAGTTGGGGTAATGGAACCGTTTTTAATGCGCA
TGGCACATGGGGCTCCAGTTATGCAATTGCGTGATAAATCCTCTAGAAATGGAAAAAGTCCTCGTGATAAAAGTTCTCGATCATTTGGAAATTCACGAAGCAGGAATACTGCTATTCCAACAGAGCAGACACTTCGTGTGTGCCGACGCTTCTATGTTGCACTCATGTTGGGACGTCTAGTAGAGGTTAGTTGCTTTACT
TGACTAATTTTTGTGTTAAACAAATGGATAGTTGTTTTGTACATGCTTCAATGTTTTCTTGGAAAATTGGTGCTCACTTTAAATGTGAATAGTTCATGCCAATTGATTTTTGACTCAATATATCATTCTGGTTGGTAAAGTATTTGACATTATTGATGGCACAAGCTCAAGCAAGGCTGGTTATAGATAAGTACTGGTGA
ACAAGTTGCATGTGGTAGCAACGTTGCTGTTTGTAGACCTGGAGCTTGTAATTTTTGACAGTGGTATATGTTTTATGCTCTAATACCTAGAGAACCCAAAATTTTATGTTTTGACAGTGGTATATGTTTGCTTATGAATTCAAATGCCAAAGTTTTAATTGCCATATTCAACAATTGCAGAAAAAATAAGAAAGTAATGC
AAGAAGGATTAAATTTAGTTTGTATCTCTAAGTTTCTAGGATTAAATTCGGTCACAGAAACCAATTTGGATTGGAGCTGAAAGGTTCATGTTGGGTAATACTTGCTGCCGTGTTTAATTTCCCATTACCAATTTGTTTTGCTTCTTATAGTGTGATCTCTTGATCAATGTTGCACGACTCGGACTCGGCAAAGACTCGGC
TGGCATGTGACAAGTCGACTCGGGAAAGACTCGGGACAGACTTGGGAGACGG
Intron 5 GTTGGGTACT ... ATTCATGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 33.33 | 59 | 36 | 23 |
| A2 | 26.83 | 45 | 25 | 8 |
| A3 | 28.06 | 50 | 32 | 7 |
| A4 | 29.09 | 39 | 21 | 11 |
| A5 | 22.45 | 19 | 8 | 3 |
| A6 | 23.81 | 8 | 5 | 0 |
| A7 | 30.43 | 8 | 6 | 1 |
| A8 | 0 | 1 | 0 | 0 |
| A9 | 17.65 | 7 | 1 | 2 |
| A10 | 27.27 | 12 | 9 | 0 |
>TRINITY_DN126567_c2_g1_i12 from sample A1 / Example spliced isoformAGAAAAACCATATTTATAGAAGTCGAGTTACTTGTACCGCCTTTTTTCCAGCCATATCCTTCATTTCAAATTCCTGTCTCCTCTTTGCAGGAGAAAAGAGGTCCCGCGAGTAAATTATGCAGGCGATCCAAATCGGGCAGAGATAGCAAACAAGACGTCGAGAGATCGAGTCTCGCAGAATGAGTTCCAGTCAGCGAAAT
ACAAAGCTGGACCAGTTTTTCCCTTCAAAAAAGATAAAGTGTCTATCCCCATCTGGTAAGATAGTCAAGACCAATAAGGATGTAAAATCTCCTAATACGAAAGGTAGCTTGGATGGCTACCTAGTAAAGTCTATTGATGGACTTCCTTCACCGGATAATACATCATCAGCTCAATATGGCTTAAAGAGAGGAGATGCAGC
GAAGCAAAATTTGACTTTTGAGGTTAAACAACCTTCAACCACTCTGAATAAGGCGCTGCCAGAGAATGCTTTTATATTTCAACAAGGCTCAAGTGTTTCTCAGTTAGCCTCCTCATCTCCTGTGAAGGGTCACAAAAATGAACAAGTAAAAAAATCAGAACAAGGAAAAGAGGTGTACCATGGTTCACTCTTGGTGGAAG
AAAATACAAAGGTGTCTGATGAGAAACATGGTTCTACTGCAGTATTTTTTTCGGAGGCTGAGGATTCATCTACCTACCTTTGTGTGAAAGATCAGATTTCTAGCTCCAATGGTAATAGCAAAGAACTTAGCCAGTTTGCAAATAGCTTTCTCGCAATGTGTTGCAGTGGACTTGTGTCAAAAGAGACCCCTTTATTGGAG
GAGTCTTTATCATCACCAAAGTTGAATAAAAACAAGAGGTCTGGATGCCCATCTCCTCTGTCTGCAAATAATGCTATTCTGAAGAAAAAGCAGTGTGGTGTAGTTGGTAATAAGTTGATTGAGATATCAATGGAAGGCCCTAAGATTTCTCAAAAGGGGTCTGAAGATGTGAGTAATACTGACAATGGTGCATTTACAAT
GCGTTTACCTGAGTTAGAAGGTTTGCCAGTAGGTGGGTTGGTAGGTGCATGTAAAGAAATTGAGAATAGGCAAACTGATGGCAATGGACAGCTTGTTGCTCAACCCATGAGCGTGGATTGTAGGGATTCACTGGATGTTAATGCTGAATGTTCAGTATCTCAGCCAATGCAAAATTCTGAGAATATGTCTGAAGTCGATG
GTCAAACCAAGATGCCTGTTTTTTCCACAATTGGAACTCCACAATTTCTGAGAAAATGTTGCCTAACACCTGAAATTAGGAGAGAGCGGACATCTCTATGTACTCCTAAAATTGTTTCTATTAAGGGTTCTGCCATTAAAACTCCAGGATGGGTGTACCGTAGCTCATTCTCTCCGGGAGATGAATTCTGGAATGAAGCG
ATACAGGTAGCAGATGGCTTAGTTGCCGTTAAAACTGATGATCCTGTGGAAGATCATTGTAAAGTTTCTATATGTACACCTGGGCCGGATGAACAAGGAAACCTGCAATCTGATAAGGGAGCTTACTTTAAGAGTCACGACTTGAAGATCCAGAATGACAATGGGAGTTTTTCCTCGAAAATGATTGAACAACCACATTT
ATATAGAAACAATGCTGAACAGACAGAGTTAGAAACTCTTCACCAAATTGTTGCATCTTCTAAAGTGCTTGTGTCTGGAGAATGCATAGTAAACAAGGACAGGATGAATGCTGGTAGGGTGGGTTTGTCTAAAACATTTAACACAGGAAGTTCACCATTGCCTGTCAGGCATTTTGACTTCCAATGTGAGGATCATATCA
TTATTGATAATACTGGAGATACTCAGAAGGGTAAACATTCAAAGGATGATACAAATATGCCAGATTCAGAGACTCGAGGAGATATAGAGAACTCTATGTTTGCAATTGGTAATGTTAAAGTCTCTGAGGAAATTATAGGACATGTGGATCTACATGCTAACACTAGCAAAGCACTCAAAGAAAGTGTGACAGAAGTCGGC
GATGCCTCTACTAGTAAGCATAACAATGTTGGTACACCATCAAGTTATTCTACTTCGAAAGACTTTCTAGAGCTGAGCTATTGGCTTCCTCAAAAGTTATGTGATGTTTATGCAAAGAAGGGCATTACCAAGCTTTATCCCTGGCAGGTTGAATGCTTGCAATTGGATGGTGTGCTTGAAAGAAAGAATCTTGTTTATTG
TGCATCTACAAGCGCTGGGAAGAGTCTTGTTGCTGAGGTGGTGTTGTTGAGAAGGGTTATATCAAGCGGGAAGAAGGCATTGCTTGTATTGCCTTATGTATCTCTTTGTGCTGAGAAGACTGAACATCTTGAAACACTTTTGGAGCCATTAAACAAGCGTGTTCGTAGCTTTTATGGAGTCCAAGGCAGTGGAACACTAC
CTAAGGACACTTCTGTTGCTGTTTGTACGATAGAGAAGGCAAATTCACTTGTAAATAGATTATTGGAGGAGGGTCGTCTTGCTGAAGTTGGAGTTATGGTGATAGATGAACTCCACATGCGCTGGGAAGAGTCTTGTTGCTGAGGTGGTGTTGTTGAGAAGGGTTATATCAAGCGGGAAGAAGGCATTGCTTGTATTGCC
TTATGTATCTCTTTGTGCTGAGAAGACTGAACATCTTGAAACACTTTTGGAGCCATTAAACAAGCGTGTTCGTAGCTTTTATGGAGTCCAAGGCAGTGGAACACTACCTAAGGACACTTCTGTTGCTGTTTGTACGATAGAGAAGGCAAATTCACTTGTAAATAGATTATTGGAGGAGGGTCGTCTTGCTGAAGTTGGAG
TTATGGTGATAGATGAACTCCACATGGTTGGAGATCAAAGTAGAGGATATCTGTTGGAGCTTATGTTGACAAAGTTGCTCTATGCAGCAGGGGAAGGTGGTTCAGGGAGCTCTAATGGTGATAGCCCAGGCAATAGCAGTGGGAAAACTGACCCTAGCATTGGAATGCAAATAGTTGGTATGAGTGCTACAATGCCAAAT
GTAGCCGCTGTTGCTAATTGGCTTCAGGCTGCCTTATATGAGACTGAATTTAGGCCAATTCCTTTGTCGGAGTACATAAAGGTTGGTAATATAGTTTACAGCAAATCTATGGAAGTGGTGCGTACGATTCGCAAGGGTGCTGATCTTGGAGGAAAAGATCCAGACCATGTTGTTGAGTTGTGCAATGAGGTTGTTCAAGG
TGGGCATTCTGTTCTTGTATTTTGCTCAAGCCGTAAGGCATGCGAGGCAACTGCAAGGCATATTGCAAAGTTCATTAAAGAATTTGCTTCTCAAAATGGACAGTCCAGCTTGCAATGGAATGATGCATTGTCTGTTGTTGAAGAATTACGAAAGTCTCCAGCAGGGTTGGACCCTACCTTGGCTGAGACTCTACCATCTC
GTGTGGCTTTTCATCATGCAGGCCTTACGGTTGAAGAGCGGGAGATAGTTGAGACCTGTTATAGGCAAGGAAATGTGAGGGTCTTAACAGCTACATCTACTTTAGCTGCTGGTGTCAATTTACCGGCCAGAAGGGTGATCTTTCGGCAGCCTAGGATTGGACGAGATTTCATAGATGGAACAAGATACAAGCAGATGGCT
GGACGGGCAGGGCGGGCTGGAATAGATACAAAAGGAGAAAGTATAATAATTTGCAAACCTGAAGAAGTCAAAAGAATAACAACACTGGTAAATGAAAGCTGTCCCCCCCTTCATTCTTGTCTCGCAGAAGATAAAAATGGAATGAAACGTGCTATTTTAGAAGTTGTGGCGGGTGGCATTGTGCAAACAGCAAATGATAT
TCATCGCTATGTGAGGTGCACACTATTGAACTCAACGCAGCCATTTGAAGATGTGGTAAAATCAGCACAAGATTCGCTTTACTGGCTATGCCATGCAAAATTTCTGGAATGGGATCAACAAACTCAAATCTATTCTACAACACCTTTAGGGCGCGCAGCATTTGGGAGTTCTCTAAGTCCAGAAGAATCAATGATTGTGC
TTGAAGATCTTGCTAGAGCAAGAGAAGGCATTGTGCTTGCCTCAGATCTTCATTTACTGTATGAGGTGACACCTATCAATGTTGATATAGAACCAGATTGGGAACTATACTATCAGAGATTTATGGAATTGTCCTCTCTTGATCAGGTTGCGATGCATACTTGTATTCCTCTTTATTTCTGTCTTATCGTTTCAACATTG
TTAACGAGCGTGCTGGTATAGGCTTCATCTGGTTGTTTACTTGGTATTTTTATGTTGAACTAATCAGGTAAAGAGGAAATGTTGAACTGTAAAAAATGATCTAACCAGAATCATGGCATTCATTTTCAATATTCAGAAACTGCAATTCAGAACCCAGAAAATGGGTGCGTCAGGGTTCTTCCAACGTGTGATCTTCACTA
AAACAATCAATTTTTAAGTAAAAAATGCAAAAAATTAGAAGGAAATGGTGGGCCCATCCAACCTAATCGTTCCTTTGGTAATCACTCTCATGCACTCAAAACAAACAACAACCTCTCATTTTCACCATTTCATTTCGAG
>TRINITY_DN126567_c2_g1_i4 from sample A1 / Example unspliced isoform:AGAAAAACCATATTTATAGAAGTCGAGTTACTTGTACCGCCTTTTTTCCAGCCATATCCTTCATTTCAAATTCCTGTCTCCTCTTTGCAGGAGAAAAGAGGTCCCGCGAGTAAATTATGCAGGCGATCCAAATCGGGCAGAGATAGCAAACAAGACGTCGAGAGATCGAGTCTCGCAGAATGAGTTCCAGTCAGCGAAAT
ACAAAGCTGGACCAGTTTTTCCCTTCAAAAAAGATAAAGTGTCTATCCCCATCTGGTAAGATAGTCAAGACCAATAAGGATGTAAAATCTCCTAATACGAAAGGTAGCTTGGATGGCTACCTAGTAAAGTCTATTGATGGACTTCCTTCACCGGATAATACATCATCAGCTCAATATGGCTTAAAGAGAGGAGATGCAGC
GAAGCAAAATTTGACTTTTGAGGTTAAACAACCTTCAACCACTCTGAATAAGGCGCTGCCAGAGAATGCTTTTATATTTCAACAAGGCTCAAGTGTTTCTCAGTTAGCCTCCTCATCTCCTGTGAAGGGTCACAAAAATGAACAAGTAAAAAAATCAGAACAAGGAAAAGAGGTGTACCATGGTTCACTCTTGGTGGAAG
AAAATACAAAGGTGTCTGATGAGAAACATGGTTCTACTGCAGTATTTTTTTCGGAGGCTGAGGATTCATCTACCTACCTTTGTGTGAAAGATCAGATTTCTAGCTCCAATGGTAATAGCAAAGAACTTAGCCAGTTTGCAAATAGCTTTCTCGCAATGTGTTGCAGTGGACTTGTGTCAAAAGAGACCCCTTTATTGGAG
GAGTCTTTATCATCACCAAAGTTGAATAAAAACAAGAGGTCTGGATGCCCATCTCCTCTGTCTGCAAATAATGCTATTCTGAAGAAAAAGCAGTGTGGTGTAGTTGGTAATAAGTTGATTGAGATATCAATGGAAGGCCCTAAGATTTCTCAAAAGGGGTCTGAAGATGTGAGTAATACTGACAATGGTGCATTTACAAT
GCGTTTACCTGAGTTAGAAGGTTTGCCAGTAGGTGGGTTGGTAGGTGCATGTAAAGAAATTGAGAATAGGCAAACTGATGGCAATGGACAGCTTGTTGCTCAACCCATGAGCGTGGATTGTAGGGATTCACTGGATGTTAATGCTGAATGTTCAGTATCTCAGCCAATGCAAAATTCTGAGAATATGTCTGAAGTCGATG
GTCAAACCAAGATGCCTGTTTTTTCCACAATTGGAACTCCACAATTTCTGAGAAAATGTTGCCTAACACCTGAAATTAGGAGAGAGCGGACATCTCTATGTACTCCTAAAATTGTTTCTATTAAGGGTTCTGCCATTAAAACTCCAGGATGGGTGTACCGTAGCTCATTCTCTCCGGGAGATGAATTCTGGAATGAAGCG
ATACAGGTAGCAGATGGCTTAGTTGCCGTTAAAACTGATGATCCTGTGGAAGATCATTGTAAAGTTTCTATATGTACACCTGGGCCGGATGAACAAGGAAACCTGCAATCTGATAAGGGAGCTTACTTTAAGAGTCACGACTTGAAGATCCAGAATGACAATGGGAGTTTTTCCTCGAAAATGATTGAACAACCACATTT
ATATAGAAACAATGCTGAACAGACAGAGTTAGAAACTCTTCACCAAATTGTTGCATCTTCTAAAGTGCTTGTGTCTGGAGAATGCATAGTAAACAAGGACAGGATGAATGCTGGTAGGGTGGGTTTGTCTAAAACATTTAACACAGGAAGTTCACCATTGCCTGTCAGGCATTTTGACTTCCAATGTGAGGATCATATCA
TTATTGATAATACTGGAGATACTCAGAAGGGTAAACATTCAAAGGATGATACAAATATGCCAGATTCAGAGACTCGAGGAGATATAGAGAACTCTATGTTTGCAATTGGTAATGTTAAAGTCTCTGAGGAAATTATAGGACATGTGGATCTACATGCTAACACTAGCAAAGCACTCAAAGAAAGTGTGACAGAAGTCGGC
GATGCCTCTACTAGTAAGCATAACAATGTTGGTACACCATCAAGTTATTCTACTTCGAAAGACTTTCTAGAGCTGAGCTATTGGCTTCCTCAAAAGTTATGTGATGTTTATGCAAAGAAGGGCATTACCAAGCTTTATCCCTGGCAGGTTGAATGCTTGCAATTGGATGGTGTGCTTGAAAGAAAGAATCTTGTTTATTG
TGCATCTACAAGCGCTGGGAAGAGTCTTGTTGCTGAGGTGGTGTTGTTGAGAAGGGTTATATCAAGCGGGAAGAAGGCATTGCTTGTATTGCCTTATGTATCTCTTTGTGCTGAGAAGACTGAACATCTTGAAACACTTTTGGAGCCATTAAACAAGCGTGTTCGTAGCTTTTATGGAGTCCAAGGCAGTGGAACACTAC
CTAAGGACACTTCTGTTGCTGTTTGTACGATAGAGAAGGCAAATTCACTTGTAAATAGATTATTGGAGGAGGGTCGTCTTGCTGAAGTTGGAGTTATGGTGATAGATGAACTCCACATGCGCTGGGAAGAGTCTTGTTGCTGAGGTGGTGTTGTTGAGAAGGGTTATATCAAGCGGGAAGAAGGCATTGCTTGTATTGCC
TTATGTATCTCTTTGTGCTGAGAAGACTGAACATCTTGAAACACTTTTGGAGCCATTAAACAAGCGTGTTCGTAGCTTTTATGGAGTCCAAGGCAGTGGAACACTACCTAAGGACACTTCTGTTGCTGTTTGTACGATAGAGAAGGCAAATTCACTTGTAAATAGATTATTGGAGGAGGGTCGTCTTGCTGAAGTTGGAG
TTATGGTGATAGATGAACTCCACATGGTTGGAGATCAAAGTAGAGGATATCTGTTGGAGCTTATGTTGACAAAGTTGCTCTATGCAGCAGGGGAAGGTGGTTCAGGGAGCTCTAATGGTGATAGCCCAGGCAATAGCAGTGGGAAAACTGACCCTAGCATTGGAATGCAAATAGTTGGTATGAGTGCTACAATGCCAAAT
GTAGCCGCTGTTGCTAATTGGCTTCAGgttgggtactgcttttgtttgatgaatgcttgcatatccgtgagaaaatatggagttcaaattagtattatataaaattaatgaagatatatagtttgtttctatcatatggtggtatttatctatgtgctgaatgggtagtaggaaaaggttatgtggtctatgaggtgtaa
gttatatttagtaatgtttgttttgtatgttgaaatgcagtgtgtgatttgatattcttggacattcaaatatattcatgcagGCTGCCTTATATGAGACTGAATTTAGGCCAATTCCTTTGTCGGAGTACATAAAGGTTGGTAATATAGTTTACAGCAAATCTATGGAAGTGGTGCGTACGATTCGCAAGGGTGCTGAT
CTTGGAGGAAAAGATCCAGACCATGTTGTTGAGTTGTGCAATGAGGTTGTTCAAGGTGGGCATTCTGTTCTTGTATTTTGCTCAAGCCGTAAGGCATGCGAGGCAACTGCAAGGCATATTGCAAAGTTCATTAAAGAATTTGCTTCTCAAAATGGACAGTCCAGCTTGCAATGGAATGATGCATTGTCTGTTGTTGAAGA
ATTACGAAAGTCTCCAGCAGGGTTGGACCCTACCTTGGCTGAGACTCTACCATCTCGTGTGGCTTTTCATCATGCAGGCCTTACGGTTGAAGAGCGGGAGATAGTTGAGACCTGTTATAGGCAAGGAAATGTGAGGGTCTTAACAGCTACATCTACTTTAGCTGCTGGTGTCAATTTACCGGCCAGAAGGGTGATCTTTC
GGCAGCCTAGGATTGGACGAGATTTCATAGATGGAACAAGATACAAGCAGATGGCTGGACGGGCAGGGCGGGCTGGAATAGATACAAAAGGAGAAAGTATAATAATTTGCAAACCTGAAGAAGTCAAAAGAATAACAACACTGGTAAATGAAAGCTGTCCCCCCCTTCATTCTTGTCTCGCAGAAGATAAAAATGGAATG
AAACGTGCTATTTTAGAAGTTGTGGCGGGTGGCATTGTGCAAACAGCAAATGATATTCATCGCTATGTGAGGTGCACACTATTGAACTCAACGCAGCCATTTGAAGATGTGGTAAAATCAGCACAAGATTCGCTTTACTGGCTATGCCATGCAAAATTTCTGGAATGGGATCAACAAACTCAAATCTATTCTACAACACC
TTTAGGGCGCGCAGCATTTGGGAGTTCTCTAAGTCCAGAAGAATCAATGATTGTGCTTGAAGATCTTGCTAGAGCAAGAGAAGGCATTGTGCTTGCCTCAGATCTTCATTTACTGTATGAGGTGACACCTATCAATGTTGATATAGAACCAGATTGGGAACTATACTATCAGAGATTTATGGAATTGTCCTCTCTTGATC
AGGCTGTTGGCAATAGAGTTGGGGTAATGGAACCGTTTTTAATGCGCATGGCACATGGGGCTCCAGTTATGCAATTGCGTGATAAATCCTCTAGAAATGGAAAAAGTCCTCGTGATAAAAGTTCTCGATCATTTGGAAATTCACGAAGCAGGAATACTGCTATTCCAACAGAGCAGACACTTCGTGTGTGCCGACGCTTC
TATGTTGCACTCATGTTGGGACGTCTAGTAGAGGTTAGTTGCTTTACTTGACTAATTTTTGTGTTAAACAAATGGATAGTTGTTTTGTACATGCTTCAATGTTTTCTTGGAAAATTGGTGCTCACTTTAAATGTGAATAGTTCATGCCAATTGATTTTTGACTCAATATATCATTCTGGTTGGTAAAGTATTTGACATTA
TTGATGGCACAAGCTCAAGCAAGGCTGGTTATAGATAAGTACTGGTGAACAAGTTGCATGTGGTAGCAACGTTGCTGTTTGTAGACCTGGAGCTTGTAATTTTTGACAGTGGTATATGTTTTATGCTCTAATACCTAGAGAACCCAAAATTTTATGTTTTGACAGTGGTATATGTTTGCTTATGAATTCAAATGCCAAAG
TTTTAATTGCCATATTCAACAATTGCAGAAAAAATAAGAAAGTAATGCAAGAAGGATTAAATTTAGTTTGTATCTCTAAGTTTCTAGGATTAAATTCGGTCACAGAAACCAATTTGGATTGGAGCTGAAAGGTTCATGTTGGGTAATACTTGCTGCCGTGTTTAATTTCCCATTACCAATTTGTTTTGCTTCTTATAGTG
TGATCTCTTGATCAATGTTGCACGACTCGGACTCGGCAAAGACTCGGCTGGCATGTGACAAGTCGACTCGGGAAAGACTCGGGACAGACTTGGGAGACGG
Intron 6 GTAGTAATCA ... TGCAATCCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 31.91 | 32 | 2 | 15 |
| A2 | 38.1 | 13 | 1 | 8 |
| A3 | 23.81 | 32 | 0 | 10 |
| A4 | 37.5 | 15 | 3 | 9 |
| A5 | 40 | 12 | 0 | 8 |
| A6 | -1 | 0 | 0 | 0 |
| A7 | 44.44 | 5 | 1 | 4 |
| A8 | 100 | 0 | 0 | 2 |
| A9 | 50 | 4 | 0 | 4 |
| A10 | 0 | 6 | 0 | 0 |
>TRINITY_DN126567_c2_g1_i11 from sample A1 / Example spliced isoformTGGGTGTTGATTTCTATTTGATCTAAGAGCCCTCTGGGCTCTTTTTAATGTACAGGTTGAAGAGCGGGAGATAGTTGAGACCTGTTATAGGCAAGGAAATGTGAGGGTCTTAACAGCTACATCTACTTTAGCTGCTGGTGTCAATTTACCGGCCAGAAGGGTGATCTTTCGGCAGCCTAGGATTGGACGAGATTTCATAG
ATGGAACAAGATACAAGCAGATGGCTGGACGGGCAGGGCGGGCTGGAATAGATACAAAAGGAGAAAGTATAATAATTTGCAAACCTGAAGAAGTCAAAAGAATAACAACACTGGTAAATGAAAGCTGTCCCCCCCTTCATTCTTGTCTCGCAGAAGATAAAAATGGAATGAAACGTGCTATTTTAGAAGTTGTGGCGGGT
GGCATTGTGCAAACAGCAAATGATATTCATCGCTATGTGAGGTGCACACTATTGAACTCAACGCAGCCATTTGAAGATGTGGTAAAATCAGCACAAGATTCGCTTTACTGGCTATGCCATGCAAAATTTCTGGAATGGGATCAACAAACTCAAATCTATTCTACAACACCTTTAGGGCGCGCAGCATTTGGGAGTTCTCT
AAGTCCAGAAGAATCAATGATTGTGCTTGAAGATCTTGCTAGAGCAAGAGAAGGCATTGTGCTTGCCTCAGATCTTCATTTACTGTATGAGGTGACACCTATCAATGTTGATATAGAACCAGATTGGGAACTATACTATCAGAGATTTATGGAATTGTCCTCTCTTGATCAGGCTGTTGGCAATAGAGTTGGGGTAATGG
AACCGTTTTTAATGCGCATGGCACATGGGGCTCCAGTTATGCAATTGCGTGATAAATCCTCTAGAAATGGAAAAAGTCCTCGTGATAAAAGTTCTCGATCATTTGGAAATTCACGAAGCAGGAATACTGCTATTCCAACAGAGCAGACACTTCGTGTGTGCCGACGCTTCTATGTTGCACTCATGTTGGGACGTCTAGTA
GAGGAGGGCGACCTCACTTGGGCGTTTTTGTAGGGGCTCCTCAACTCTCTTGACTTGGATTCGCTCATATCAGGGGGC
>TRINITY_DN126567_c2_g1_i9 from sample A1 / Example unspliced isoform:CTCTAAGTCCAGAAGAATCAATGgtagtaatcagatatatatttctactttaacatgttgcctagtcgatatattaatgtattgctttcagaattcttcttccaatttagaaaaaaggaaaaaaatcattgcaccttgacagatatgtgtctgtttttgcaatccagATTGTGCTTGAAGATCTTGCTAGAGCAAGAGAA
GGCATTGTGCTTGCCTCAGATCTTCATTTACTGTATGAGGTGACACCTATCAATGTTGATATAGAACCAGATTGGGAACTATACTATCAGAGATTTATGGAATTGTCCTCTCTTGATCAGGTTGCGATGCATACTTGTATTCCTCTTTATTTCTGTCTTATCGTTTCAACATTGTTAACGAGCGTGCTGGTATAGGCTTC
ATCTGGTTGTTTACTTGGTATTTTTATGTTGAACTAATCAGGTAAAGAGGAAATGTTGAACTGTAAAAAATGATCTAACCAGAATCATGGCATTCATTTTCAATATTCAGAAACTGCAATTCAGAACCCAGAAAATGGGTGCGTCAGGGTTCTTCCAACGTGTGATCTTCACTAAAACAATCAATTTTTAAGTAAAAAAT
GCAAAAAATTAGAAGGAAATGGTGGGCCCATCCAACCTAATCGTTCCTTTGGTAATCACTCTCATGCACTCAAAACAAACAACAACCTCTCATTTTCACCATTTCATTTCGAG