sp|Q10LG8|TLP6_ORYSJ ----> Tubby-like F-box protein 6

Intron 1 GTGGGGTATT ... CACTGAACAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	100	0	0	1
A2	45.45	6	3	7
A3	48.39	8	1	14
A4	55.56	2	2	3
A5	33.33	4	1	3
A6	37.14	22	4	22
A7	60.38	21	23	41
A8	41.82	16	6	17
A9	54.22	19	15	30
A10	42.86	24	13	23

>TRINITY_DN110039_c1_g1_i3 from sample A2 / Example spliced isoform

CAGGCCATCGCTTGGGAACGGGGATGGCTTTTCATTCGATTCGACCATCGAGAGAATTCCGACACAGGAAATGATAAACCACTGCTCCCACTGTACAGGTGCGTGGGCAAGGTGCAGAGCAGCTGCAGGTCGGTGGCATCATTAGTTTGAGGGAGAGCGCATCAGGGTTCAAGATTTTTGAGAAAAGTACTTGGATGAAA
GCATGGAGATAGAGGTTTTCTTGAAAATCCTTAAATGAAAAGCATTTGAAGTATTATTCTTGGGTTTAAAGGACTTCACTAATGAAACTGTAAGGACAAAGATAGAGCAACAAACATGCAGGTGGAATGGTTCACACCTTATCCTCAATTCCCCTCATGGATGCAATGGATTTATGAAAGC

>TRINITY_DN110039_c1_g1_i1 from sample A2 / Example unspliced isoform:

CAGGCCATCGCTTGGGAACGGGGATGGCTTTTCATTCGATTCGACCATCGAGAGAATTCCGACACAGgtggggtattttggggttatgaatttcgactggatttatcgatctatgaaagggaagctttactttcttcactgaacagGAAATGATAAACCACTGCTCCCACTGTACAGGTGCGTGGGCAAGGTGCAGAGCA
GCTGCAGGTCGGTGGCATCATTAGTTTGAGGGAGAGCGCATCAGGGTTCAAGGTATGTCTAATGCTTATTATTGGTGATTCCCTTTGCTTTTTCGATCCTATGTGCATTTTTATCTCATATGTTTCCATTGAACCCTTGTTTTGTATATCTTTCAATGTTTCCAATTCACGCCCCCAATCCGTAACTGGGAGATTTTACA
TCACAGTTGAATCTCTATCTTGTTTAGTCATTCACATACGAAAATGCCCCAAATAATTCCTACCGGTGGGTGCTCCGAGGCCACCCATCAGGCCCGCCTATATTGCCTGGTGATGATGATGATACGACTGATGTTGAGTGGATTCGACAGTATCTTCCCGTGTGCTAAAATCTTTTGGCGATGTCTATTTGTTTCTGGTC
TTTGGTGTAGCTTATCATGTTTACAGAGTATATAAAAGTGTACTCTATTGTATACTAGATCCAAGAAGTGTACTCTAATGCGTCAATCATTTAAAAGTATACCACATTTTGGCTGCAAATTTTAGCTGGAAGATAGGGTCGGGTGCACAAATCTTCTTAGGTGTCGATCTGAGATTAAGAACAGCTCTGATTCAGGGGAT
CATTATTGGCTTACATCTTTTGATTTAAATCTTCCTCACG

Intron 2 GTATGTCTAA ... TACATCACAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	46.11	13	15.5	7
A2	31.7	28	14	12
A3	30.98	49	21.5	23
A4	25.52	40	11	17
A5	39.54	20	23.5	4
A6	21.86	307	107	72
A7	19.8	296	92	60
A8	23.69	200	72	56
A9	19.57	266	85.5	51
A10	23.13	236	77.5	69

>TRINITY_DN110039_c1_g1_i4 from sample A2 / Example spliced isoform

CAGGCCATCGCTTGGGAACGGGGATGGCTTTTCATTCGATTCGACCATCGAGAGAATTCCGACACAGGTGCGTGGGCAAGGTGCAGAGCAGCTGCAGGTCGGTGGCATCATTAGTTTGAGGGAGAGCGCATCAGGGTTCAAGTTGAATCTCTATCTTGTTTAGTCATTCACATACGAAAATGCCCCAAATAATTCCTACC
GGTGGGTGCTCCGAGGCCACCCATCAGGCCCGCCTATATTGCCTGGTGATGATGATGATACGACTGATGTTGAGTGGATTCGACAGTATCTTCCCGTGTGCTAAAATCTTTTGGCGATGTCTATTTGTTTCTGGTCTTTGGTGTAGCTTATCATGTTTACAGAGTATATAAAAGTGTACTCTATTGTATACTAGATCCAA
GAAGTGTACTCTAATGCGTCAATCATTTAAAAGTATACCACATTTTGGCTGCAAATTTTAGCTGGAAGATAGGGTCGGGTGCACAAATCTTCTTAGGTGTCGATCTGAGATTAAGAACAGCTCTGATTCAGGGGATCATTATTGGCTTACATCTTTTGATTTAAATCTTCCTCACG

>TRINITY_DN110039_c1_g1_i1 from sample A2 / Example unspliced isoform:

CAGGCCATCGCTTGGGAACGGGGATGGCTTTTCATTCGATTCGACCATCGAGAGAATTCCGACACAGGTGGGGTATTTTGGGGTTATGAATTTCGACTGGATTTATCGATCTATGAAAGGGAAGCTTTACTTTCTTCACTGAACAGGAAATGATAAACCACTGCTCCCACTGTACAGGTGCGTGGGCAAGGTGCAGAGCA
GCTGCAGGTCGGTGGCATCATTAGTTTGAGGGAGAGCGCATCAGGGTTCAAGgtatgtctaatgcttattattggtgattccctttgctttttcgatcctatgtgcatttttatctcatatgtttccattgaacccttgttttgtatatctttcaatgtttccaattcacgcccccaatccgtaactgggagattttaca
tcacagTTGAATCTCTATCTTGTTTAGTCATTCACATACGAAAATGCCCCAAATAATTCCTACCGGTGGGTGCTCCGAGGCCACCCATCAGGCCCGCCTATATTGCCTGGTGATGATGATGATACGACTGATGTTGAGTGGATTCGACAGTATCTTCCCGTGTGCTAAAATCTTTTGGCGATGTCTATTTGTTTCTGGTC
TTTGGTGTAGCTTATCATGTTTACAGAGTATATAAAAGTGTACTCTATTGTATACTAGATCCAAGAAGTGTACTCTAATGCGTCAATCATTTAAAAGTATACCACATTTTGGCTGCAAATTTTAGCTGGAAGATAGGGTCGGGTGCACAAATCTTCTTAGGTGTCGATCTGAGATTAAGAACAGCTCTGATTCAGGGGAT
CATTATTGGCTTACATCTTTTGATTTAAATCTTCCTCACG

Intron 3 GTGGGGTATT ... CACTGTACAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	17.65	14	0	6
A2	19.54	20	3	6
A3	17.76	44	1	18
A4	7.14	32.5	2	3
A5	4.91	31	1	2
A6	7.22	244	4	34
A7	10.3	244	23	33
A8	7.98	176	6	24
A9	8.95	252	15	34
A10	8.68	200	13	25

>TRINITY_DN110039_c1_g1_i4 from sample A2 / Example spliced isoform

CAGGCCATCGCTTGGGAACGGGGATGGCTTTTCATTCGATTCGACCATCGAGAGAATTCCGACACAGGTGCGTGGGCAAGGTGCAGAGCAGCTGCAGGTCGGTGGCATCATTAGTTTGAGGGAGAGCGCATCAGGGTTCAAGTTGAATCTCTATCTTGTTTAGTCATTCACATACGAAAATGCCCCAAATAATTCCTACC
GGTGGGTGCTCCGAGGCCACCCATCAGGCCCGCCTATATTGCCTGGTGATGATGATGATACGACTGATGTTGAGTGGATTCGACAGTATCTTCCCGTGTGCTAAAATCTTTTGGCGATGTCTATTTGTTTCTGGTCTTTGGTGTAGCTTATCATGTTTACAGAGTATATAAAAGTGTACTCTATTGTATACTAGATCCAA
GAAGTGTACTCTAATGCGTCAATCATTTAAAAGTATACCACATTTTGGCTGCAAATTTTAGCTGGAAGATAGGGTCGGGTGCACAAATCTTCTTAGGTGTCGATCTGAGATTAAGAACAGCTCTGATTCAGGGGATCATTATTGGCTTACATCTTTTGATTTAAATCTTCCTCACG

>TRINITY_DN110039_c1_g1_i1 from sample A2 / Example unspliced isoform:

CAGGCCATCGCTTGGGAACGGGGATGGCTTTTCATTCGATTCGACCATCGAGAGAATTCCGACACAGgtggggtattttggggttatgaatttcgactggatttatcgatctatgaaagggaagctttactttcttcactgaacaggaaatgataaaccactgctcccactgtacagGTGCGTGGGCAAGGTGCAGAGCA
GCTGCAGGTCGGTGGCATCATTAGTTTGAGGGAGAGCGCATCAGGGTTCAAGGTATGTCTAATGCTTATTATTGGTGATTCCCTTTGCTTTTTCGATCCTATGTGCATTTTTATCTCATATGTTTCCATTGAACCCTTGTTTTGTATATCTTTCAATGTTTCCAATTCACGCCCCCAATCCGTAACTGGGAGATTTTACA
TCACAGTTGAATCTCTATCTTGTTTAGTCATTCACATACGAAAATGCCCCAAATAATTCCTACCGGTGGGTGCTCCGAGGCCACCCATCAGGCCCGCCTATATTGCCTGGTGATGATGATGATACGACTGATGTTGAGTGGATTCGACAGTATCTTCCCGTGTGCTAAAATCTTTTGGCGATGTCTATTTGTTTCTGGTC
TTTGGTGTAGCTTATCATGTTTACAGAGTATATAAAAGTGTACTCTATTGTATACTAGATCCAAGAAGTGTACTCTAATGCGTCAATCATTTAAAAGTATACCACATTTTGGCTGCAAATTTTAGCTGGAAGATAGGGTCGGGTGCACAAATCTTCTTAGGTGTCGATCTGAGATTAAGAACAGCTCTGATTCAGGGGAT
CATTATTGGCTTACATCTTTTGATTTAAATCTTCCTCACG

Intron 4 GTATGTCTAA ... TAACTGGGAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	57.58	14	19	7
A2	34.88	28	15	9
A3	38.96	47	30	19
A4	30.16	44	19	14
A5	55.93	26	33	1
A6	36.67	316	183	35
A7	33.98	307	158	39
A8	34.82	219	117	30
A9	34.84	288	154	31
A10	34.85	243	130	44

>TRINITY_DN102925_c1_g1_i2 from sample A4 / Example spliced isoform

GCCATCGCTTGGGAACGGGGATGGCTTTTCATTCGATTCGACCATCGAGAGAATTCCGACACAGGTGCGTGGGCAAGGTGCAGAGCAGCTGCAGGTCGGTGGCATCATTAGTTTGAGGGAGAGCGCATCAGGGTTCAAGATTTTACATCACAGTTGAATCTCTATCTTGTTTAGTCATTCACATACGAAAATGCCCCAAA
TAATTCCTACCGGTGGGTGCTCCGAGGCCACCCATCAGGCCCGCCTATATTGCCTGGTGATGATGATGATACGACTGATGTTGAGTGGATTCGACAGTATCTTCCCGTGTGCTAAAATCTTTTGGCGATGTCTATTTGTTTCTGGTCTTTGGTGTAGCTTATCATGTTTACAGAGTATATAAAAGTGTACTCTATTGTAT
ACTAGATCCAAGAAGTGTACTCTAATGCGTCAATCATTTAAAAGTATACCACATTTTGGCTGCAAATTTTAGCTGGAAGATAGGGTCGGGTGCACAAATCTTCTTAGGTGTCGATCTGAGATTAAGAACAGCTCTGATTCAGGGGATCATTATTGGCTTACATCTTTTGATTTAAATCTTCCTCACTCTATTTCTGCTGA
ATGGAATACTTTAATTTTAAGTCTGTTTAAGTTGGGGTAGAAGTTAAATAATTCTCAGAACTGTAGTTTTTGGGAGTATAATAAAGAATCGGGATTCGTTACTGCAAAATTGGCTTATGACTTCTTGATGACTTTTAGCAACTCTACTTGCTGGTGGGGGAAGAAAATTTGGCGTTGGAGCTGTCCATTAAAGTTAAAGT
GCTTCATTTGGATGCTGCTAAACAATAGAGCTTTAACTTGGATAATCTCCAGCGAAGGGGATTTGTTGGACCTGGATTTTGTGTTCTGTGCAATGCTGAAAATGAGACAGTAACACATCTTTTCTGTGGATGTGATTTCATACAAAAGGTTTGTGTAATTTTCTGATTTATTCGATGATCTAGGACGCTGCTTCTATTGA
AGAAGATTTGGCAATTTGGTATGAGAGAAAACATAAATATAGAGATATTCCTTTATTTGTCTTATGGGAAACGTAGAAAGCCTGAAATAGATGTATTTTTCAAGACATTTCACCCTCAACAACTGTTATATGCTCAAAGATTATTGGGAATATATGAAATTTTTTAAACAAAAAAAAGACAAAAATAC

>TRINITY_DN102925_c1_g1_i3 from sample A4 / Example unspliced isoform:

GCCATCGCTTGGGAACGGGGATGGCTTTTCATTCGATTCGACCATCGAGAGAATTCCGACACAGGTGCGTGGGCAAGGTGCAGAGCAGCTGCAGGTCGGTGGCATCATTAGTTTGAGGGAGAGCGCATCAGGGTTCAAGgtatgtctaatgcttattattggtgattccctttgctttttcgatcctatgtgcattttta
tctcatatgtttccattgaacccttgttttgtatatctttcaatgtttccaattcacgcccccaatccgtaactgggagATTTTACATCACAGTTGAATCTCTATCTTGTTTAGTCATTCACATACGAAAATGCCCCAAATAATTCCTACCGGTGGGTGCTCCGAGGCCACCCATCAGGCCCGCCTATATTGCCTGGTGA
TGATGATGATACGACTGATGTTGAGTGGATTCGACAGTATCTTCCCGTGTGCTAAAATCTTTTGGCGATGTCTATTTGTTTCTGGTCTTTGGTGTAGCTTATCATGTTTACAGAGTATATAAAAGTGTACTCTATTGTATACTAGATCCAAGAAGTGTACTCTAATGCGTCAATCATTTAAAAGTATACCACATTTTGGC
TGCAAATTTTAGCTGGAAGATAGGGTCGGGTGCACAAATCTTCTTAGGTGTCGATCTGAGATTAAGAACAGCTCTGATTCAGGGGATCATTATTGGCTTACATCTTTTGATTTAAATCTTCCTCACTCTATTTCTGCTGAATGGAATACTTTAATTTTAAGTCTGTTTAAGTTGGGGTAGAAGTTAAATAATTCTCAGAA
CTGTAGTTTTTGGGAGTATAATAAAGAATCGGGATTCGTTACTGCAAAATTGGCTTATGACTTCTTGATGACTTTTAGCAACTCTACTTGCTGGTGGGGGAAGAAAATTTGGCGTTGGAGCTGTCCATTAAAGTTAAAGTGCTTCATTTGGATGCTGCTAAACAATAGAGCTTTAACTTGGATAATCTCCAGCGAAGGGG
ATTTGTTGGACCTGGATTTTGTGTTCTGTGCAATGCTGAAAATGAGACAGTAACACATCTTTTCTGTGGATGTGATTTCATACAAAAGGTTTGTGTAATTTTCTGATTTATTCGATGATCTAGGACGCTGCTTCTATTGAAGAAGATTTGGCAATTTGGTATGAGAGAAAACATAAATATAGAGATATTCCTTTATTTGT
CTTATGGGAAACGTAGAAAGCCTGAAATAGATGTATTTTTCAAGACATTTCACCCTCAACAACTGTTATATGCTCAAAGATTATTGGGAATATATGAAATTTTTTAAACAAAAAAAAGACAAAAATAC