NA ----> NA
Intron 1 GTATTTTTCT ... AGAAGTATAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 28.21 | 42 | 15 | 18 |
| A2 | 17.33 | 62 | 18 | 8 |
| A3 | 16.36 | 69 | 12 | 15 |
| A4 | 28.42 | 34 | 18 | 9 |
| A5 | 8.11 | 17 | 1 | 2 |
| A6 | 33.33 | 1 | 0 | 1 |
| A7 | 36.84 | 18 | 12 | 9 |
| A8 | 45.95 | 10 | 7 | 10 |
| A9 | 20 | 22 | 6 | 5 |
| A10 | 32.82 | 44 | 24 | 19 |
>TRINITY_DN40949_c0_g1_i1 from sample A10 / Example spliced isoformCGCTCATCTCCATTCAAAATTTTGGCCGACTCTTCTACATAAATACCCTTATTAGGTGAATCCACTTAACTAACAATGTCATTATTCGGCGTATTTCTATTCTCTCTCTGAAACTTGTGCCACTCGAGGATAAGGCCTGCAGAACGAAACGTTGCTAGGGTTTCATCGGCACCACATTCAAAATATTTCATATTTTTGCA
GTGCTCCTGTGCCGGTCAAGCTTCCGCGGTAGAAACTCATATATGCTTCCCGCTGGTTTGGCGGAGGCCTTGCAGGAGAAGTAATCATCGGAGGAAAGGTCTTTTATCAGGTTCTTTCCCCGTTTTAACCAGCGGCTTTTTTCTTTTGATTTCCACGACACAGATTTTTCTCTGTTTGTGGCAGGTGGTCCCGGCTGGTA
AACAAGATGAATGTAGGCGGAGGTGGAGGCAGAAGCAAAAACAGGAGCAAAAACAAAAACCAGAAACAGGATAGACTTTCCCCTCCAGCAAATGAGGGAGTTACAAATGGAGGCCCTAACTGTGGCAAAGATAATGAAGTATCCATCTCGGGCGAAGCAGCCCCGTTGCAGATCCTTAATAAACGTCTTCTTGGTCAAAT
CACGAGCTTAAGAGAAGAAAATGGTACTTTGAAAGAGAAACTCATTCAAATGGAATCACGAGTCAATCAAATGCCGAGTTTAGGAGAAGAAAATGGTACTTTGGAAGAGAAGCTCATTCAAATGCAAGCACAAATCAGCAATCTTGAAGCTCTGAAAACGAATTTGCAGTCTGAGAGGGATAATCTGCATGGTGAACAGG
TGCAACTAAAAGAGCAATTGGAGGAATGCAGAAGAGAAACTGAACAGCTCAAGGAACGCTCGGAGGTATGTGAGAGAGAAATTAAGTCCAGCCATGCAGTTCAAAGTAACCTAGAAGCTACTGTTTTCGAGTTGAGAGATCAAATTCAGGTGAAATCTGCAGAGTTAGAGGCAGCACGCAAAGCTTGGGAATTGGAAAAG
GATGAGCTTTTATCACAGACTGTAGAAGCAAGAAAGGAGTCTGAGAAAAGTATTCAGAACTTACATGGAGAAATGGAAGAAAACCAGCATTTGTGGAATGCTGAAAAGACAAATTTGGAAAGCACTGTTGCAGAGCTACAAACAAAGCTTGATATGATAGATAATGAAAGGAAATTACTGAGTCAGAAAAATACAGAGCT
AAGCACTGAAGCACAGTCCTTGGAGGTCCAGTTGAACGAGAGTGAATCTAAGTTGAATGACTCCAAGGGAGAGACTAAGGAATTGTACAGAAAAATTAAAGAAGATCGGCACCTGTGGGATGCTGAAAAGAGTGATTTGGAAGGAATTGTTAGTGAGCTCAAAACAAAGTTTGACTTGATGGCTAGTGAAAAGTTATCTG
TGGGCCGGAAAAATGGAGAGCTAAGTGCTGAAGTGGAGTCCTTGAAATCTCTGTTGAATGAATCCAAGGGAACGACTCAGGAATTACATGAAAAGATTGAAGAATGTCAGAATTCGCGGGCTGCTGAAAAGAGCAATCTGGAAAGCATTGTTGCAGAGCTGAAAACCAAGCTTGATTCTGTGGCTAGTGAAAGGGTATCT
CTGAGCCAGACAAATGGAGAGCTGATTAATAAAGCAGAGTCCTTGAAGGTCCAGTTGAATGAGTTGCAATCTAATTTGGATGACTCCAAGGGAAGGACTCTGGAACTGTGCGGAGAAATTGAAAAAGATCGGTGTCTGTGGGATGTTGAAAAGAATAACTTGGAAGGTGCTGTTACAAAGTTGCAATCAAAGTTTGATTT
GATAGATAGTGAAAGGGAAATATTGAGCCAGAAAAATACAGATCTAAGCACTGAAATGCAGTCCTTGAAGACAGAGTTGGTTGCAGCAAAGGAAGTATATGATGAAGCCAGTGTTCACCTGAATATGATTAAAGAAGAAAAAGAGGCTTTAGATGAGAAATTAATGCTACAGATCTCTAGAAATAATGCACTTGAAGAAG
AGTTGTTCTCAACAAAGTTTTCTTTCGAAGAAATGAAGGAATTTGCTTCCAAGGGTGAACAACAAATAGTTAATTTGCAGAGTCGGCTTTCAGCTATGGCAGAGGAGAAAGCAAGTGAAATAACTGATTTACAGGGTCAGCTCTCATCCCTTGCTAAGGCAAAAATGCTCACTGAGGAGAAAAATTCTGAACTGGAAAGA
GGAAAATTGGTTTTGGAAGAAGAGCAGCCATTCCTTAAGGACAAAATAAGGGAGTTGGAAACAGCCATCAAATCTCTCGATGAGGATCTTAAAGCTTCTAGGGCCATGACAGTGGAGAAAGAAGGCCAATTTTCTTGTTTACAATATCAGCTCTCAGACCTTGCTGAGGAGAAAAAGTGCCTCGAGGAGAAAGTGAACAG
CACTGTTGCAGAGCTACAAATAAAGCTTGATCTGATGGATAGTGAAAGGGAATTACTAAGCCACAAAAGTATAGAGCTAAACACTGAATTGCAGTCCTTGAATACAGAACTGGTGGCAGCAAAGTCAGCATATGATACAGCGACTACTCACCTGAATAATATTAAAGAAGAAAAAGAGGCTTTAGATGAGAAATTGACAA
CACAGCTCTCTAGAAATAATGCTCTTGAAGAAGAGTTGTTGTCAACAAAGTCTTCCTTAGAAGCAATGAAGGAATCTGCTTCCAAGGGTGAGCAACAAATAGCTAATTTGCAGAGTCAGCTCCTAGCTGTTGAAGAGAAAAAAGATGGTCAAATTTTTGATATACAGAGTCAGTTTTCAGCCATGGCAGAGGAGAAAAGA
AGCCAATTAGCTGATTTACAAGATCAGCTCTCAGCCCTTACTGAGGCTAAAATGTTCCTTGAGGAGAAAAATGTTAAACTGCAAAGAGAAATACTAGTTTCAGAAAAAGAGCAGCTACGCCTTGAGGGCGGAATAAGGGATCGTGAAGCTTCTATGGCAATTGCAGCAAAGAAAGAGGGCCAGTTATCTGGTTTACAATA
TCAACTCTCAGACCTTGCTGCGGAGAAAAAGTGTCTAGAGGAGAAATACAATTCTTTACTGACTAAATTGAATAAATGTACATTGGTTTCAGAAGAAAATGTCCATCTTCAGGACAGAATAAAGGAATTGGAGACTCATGTGGATTCTCTCACTAGGGATTTTGAAAGTAGAGATATTATGCTCCAGAAGTTTAAGTCAG
AACGTCAAGATTCTCAGTTACCTGAATGTGCCGAAAATGGAAAGCCAAACTGCGTGCATGCCACTGGAGAACCAAATTGTGTGCCTGGAAAACCAAAGCCAAAGCCAGCCTTTGAAAAGCAAAAGCCAAAAAGGTATTATGCATGGTCTGCTGTAGCATCTACGGGTGCTCTAGCTGCAGCAGTAGTTACAGCTTACCTC
AAGTTCTCAAAGTAAGAACTGAATCTGACTTTTCCTTTTGCATAGTCTTCGCAACCATCAGTATTTTGCTATAACTACTTCTGATGTGTTGCAATAAGATGTTCATAATTTTACCTATTGTCACACTTTTGTAACCATCATCTTATTCATTTAAAAATCAAGAGCATTTCATTTCATATTGTATATGTTGTTTGAGCAGA
TCATAGGGATTCTGTACCTGATCTTTTCCTCTGTATAAAGATATTTTTAAATGCATGGGATGGAAATTATATATTGGATTAGAATGCCACATGTGCATAAATTAGAAACAGTCCTTGTTTTAGTCAAATATGTTACTACTGTAGGAGTAAGCATAGTGTTCCCAATTATTTTACTTTCGATTATGAAAGTAACACTGATC
TTAGTTTATTTTAGGCATTTGACGGGC
>TRINITY_DN40949_c0_g1_i3 from sample A10 / Example unspliced isoform:CGCTCATCTCCATTCAAAATTTTGGCCGACTCTTCTACATAAATACCCTTATTAGGTGAATCCACTTAACTAACAATGTCATTATTCGGCGTATTTCTATTCTCTCTCTGAAACTTGTGCCACTCGAGGATAAGGCCTGCAGAACGAAACGTTGCTAGGGTTTCATCGGCACCACATTCAAAATATTTCATATTTTTGCA
GTGCTCCTGTGCCGGTCAAGCTTCCGCGGTAGAAACTCATATATGCTTCCCGCTGGTTTGGCGGAGGCCTTGCAGGAGAAGTAATCATCGGAGGAAAGGTCTTTTATCAGGTTCTTTCCCCGTTTTAACCAGCGGCTTTTTTCTTTTGATTTCCACGACACAGgtatttttctactctgtttttaaatatttttgaagct
tttgctgtaacattggtgccgttatcgataatgtcactgttttgtcttgtttttatgcattatttgtaaattttgttgcagtttccttcttgcaaacagttccgccggcggaagttaaaatttttttggttagctttgagctagctttgtttactttttctttattctgctattgcgagctctgccgctatcatatttaa
aattttcaagttttttcagtagttttggtgtcgttattgtcaacatcattgttttacccttttatcctgctttaaatgaaaaatttgtggcatattccttattgcaaacagtttttctccttacttcaaaacattttgtctagctttgatctactttttttgttctttatttctctattgcgagctctgcggctaactgt
ctaggtttatgccgtaactttgttttggttatcgtcaacgtcaatatcttgcccttttatcggtttttgatgcattatttgtattttccttcttgcagacattttcggcccgaaaaaagtcgtgtagctttaagctagtgttgtttcatttttctttattttgctatcgtgaactctgtggctataatatttaacatttc
cagccgctttaatgtaactttggtgctttaatcgtcaacgtcattgtttttccattttatcgtttttatcatgcagtacttcaaattttgtgacattttcatttttgcagacagtcctatccttgggataaaaaatatgggctagctttgagctagtatttttttaggtttatttatttaattttatatcgctattttta
tctctgcagctatcatatttaaaatttctaggttttttactgcaacattagtgcttttatcatcattatcaatcttttgccatattatcgcttttatcatgcattagttcaaaattttgtaataattttcttcttggagacagttgcgtcccagttcgaattttttagcctagctttgaggtagtttgtattatttttct
caattatgctattgtgatccctgtcgctatcagatttgacatttcctggttttgaggttatttttggttgtgttctgctctatttttaagcgtcacctctttcatgtaaaatattacctctcagactttcttttgatagaaactgccgcttctccttgtgcttgcttgagctagtcttgcgtgtgaagtctttcgttaac
atctgcaagggttttatttttcaaatactatgatatggtctagttctccgtttaagcggccgaataatttgaaggcagtgctttgtaagtatgcgaatgcgtttttgtttttgaagatttggagtagataagagaagtatagATTTTTCTCTGTTTGTGGCAGGTGGTCCCGGCTGGTAAACAAGATGAATGTAGGCGGA
GGTGGAGGCAGAAGCAAAAACAGGAGCAAAAACAAAAACCAGAAACAGGATAGACTTTCCCCTCCAGCAAATGAGGGAGTTACAAATGGAGGCCCTAACTGTGGCAAAGATAATGAAGTATCCATCTCGGGCGAAGCAGCCCCGTTGCAGATCCTTAATAAACGTCTTCTTGGTCAAATCACGAGCTTAAGAGAAGAAAA
TGGTACTTTGAAAGAGAAACTCATTCAAATGGAATCACGAGTCAATCAAATGCCGAGTTTAGGAGAAGAAAATGGTACTTTGGAAGAGAAGCTCATTCAAATGCAAGCACAAATCAGCAATCTTGAAGCTCTGAAAACGAATTTGCAGTCTGAGAGGGATAATCTGCATGGTGAACAGGTGCAACTAAAAGAGCAATTGG
AGGAATGCAGAAGAGAAACTGAACAGCTCAAGGAACGCTCGGAGGTATGTGAGAGAGAAATTAAGTCCAGCCATGCAGTTCAAAGTAACCTAGAAGCTACTGTTTTCGAGTTGAGAGATCAAATTCAGGTGAAATCTGCAGAGTTAGAGGCAGCACGCAAAGCTTGGGAATTGGAAAAGGATGAGCTTTTATCACAGACT
GTAGAAGCAAGAAAGGAGTCTGAGAAAAGTATTCAGAACTTACATGGAGAAATGGAAGAAAACCAGCATTTGTGGAATGCTGAAAAGACAAATTTGGAAAGCACTGTTGCAGAGCTACAAACAAAGCTTGATATGATAGATAATGAAAGGAAATTACTGAGTCAGAAAAATACAGAGCTAAGCACTGAAGCACAGTCCTT
GGAGGTCCAGTTGAACGAGAGTGAATCTAAGTTGAATGACTCCAAGGGAGAGACTAAGGAATTGTACAGAAAAATTAAAGAAGATCGGCACCTGTGGGATGCTGAAAAGAGTGATTTGGAAGGAATTGTTAGTGAGCTCAAAACAAAGTTTGACTTGATGGCTAGTGAAAAGTTATCTGTGGGCCGGAAAAATGGAGAGC
TAAGTGCTGAAGTGGAGTCCTTGAAATCTCTGTTGAATGAATCCAAGGGAACGACTCAGGAATTACATGAAAAGATTGAAGAATGTCAGAATTCGCGGGCTGCTGAAAAGAGCAATCTGGAAAGCATTGTTGCAGAGCTGAAAACCAAGCTTGATTCTGTGGCTAGTGAAAGGGTATCTCTGAGCCAGACAAATGGAGAG
CTGATTAATAAAGCAGAGTCCTTGAAGGTCCAGTTGAATGAGTTGCAATCTAATTTGGATGACTCCAAGGGAAGGACTCTGGAACTGTGCGGAGAAATTGAAAAAGATCGGTGTCTGTGGGATGTTGAAAAGAATAACTTGGAAGGTGCTGTTACAAAGTTGCAATCAAAGTTTGATTTGATAGATAGTGAAAGGGAAAT
ATTGAGCCAGAAAAATACAGATCTAAGCACTGAAATGCAGTCCTTGAAGACAGAGTTGGTTGCAGCAAAGGAAGTATATGATGAAGCCAGTGTTCACCTGAATATGATTAAAGAAGAAAAAGAGGCTTTAGATGAGAAATTAATGCTACAGATCTCTAGAAATAATGCACTTGAAGAAGAGTTGTTCTCAACAAAGTTTT
CTTTCGAAGAAATGAAGGAATTTGCTTCCAAGGGTGAACAACAAATAGTTAATTTGCAGAGTCGGCTTTCAGCTATGGCAGAGGAGAAAGCAAGTGAAATAACTGATTTACAGGGTCAGCTCTCATCCCTTGCTAAGGCAAAAATGCTCACTGAGGAGAAAAATTCTGAACTGGAAAGAGGAAAATTGGTTTTGGAAGAA
GAGCAGCCATTCCTTAAGGACAAAATAAGGGAGTTGGAAACAGCCATCAAATCTCTCGATGAGGATCTTAAAGCTTCTAGGGCCATGACAGTGGAGAAAGAAGGCCAATTTTCTTGTTTACAATATCAGCTCTCAGACCTTGCTGAGGAGAAAAAGTGCCTCGAGGAGAAAGTGAACAGCACTGTTGCAGAGCTACAAAT
AAAGCTTGATCTGATGGATAGTGAAAGGGAATTACTAAGCCACAAAAGTATAGAGCTAAACACTGAATTGCAGTCCTTGAATACAGAACTGGTGGCAGCAAAGTCAGCATATGATACAGCGACTACTCACCTGAATAATATTAAAGAAGAAAAAGAGGCTTTAGATGAGAAATTGACAACACAGCTCTCTAGAAATAATG
CTCTTGAAGAAGAGTTGTTGTCAACAAAGTCTTCCTTAGAAGCAATGAAGGAATCTGCTTCCAAGGGTGAGCAACAAATAGCTAATTTGCAGAGTCAGCTCCTAGCTGTTGAAGAGAAAAAAGATGGTCAAATTTTTGATATACAGAGTCAGTTTTCAGCCATGGCAGAGGAGAAAAGAAGCCAATTAGCTGATTTACAA
GATCAGCTCTCAGCCCTTACTGAGGCTAAAATGTTCCTTGAGGAGAAAAATGTTAAACTGCAAAGAGAAATACTAGTTTCAGAAAAAGAGCAGCTACGCCTTGAGGGCGGAATAAGGGATCGTGAAGCTTCTATGGCAATTGCAGCAAAGAAAGAGGGCCAGTTATCTGGTTTACAATATCAACTCTCAGACCTTGCTGC
GGAGAAAAAGTGTCTAGAGGAGAAATACAATTCTTTACTGACTAAATTGAATAAATGTACATTGGTTTCAGAAGAAAATGTCCATCTTCAGGACAGAATAAAGGAATTGGAGACTCATGTGGATTCTCTCACTAGGGATTTTGAAAGTAGAGATATTATGCTCCAGAAGTTTAAGTCAGAACGTCAAGATTCTCAGTTAC
CTGAATGTGCCGAAAATGGAAAGCCAAACTGCGTGCATGCCACTGGAGAACCAAATTGTGTGCCTGGAAAACCAAAGCCAAAGCCAGCCTTTGAAAAGCAAAAGCCAAAAAGGTATTATGCATGGTCTGCTGTAGCATCTACGGGTGCTCTAGCTGCAGCAGTAGTTACAGCTTACCTCAAGTTCTCAAAGTAAGAACTG
AATCTGACTTTTCCTTTTGCATAGTCTTCGCAACCATCAGTATTTTGCTATAACTACTTCTGATGTGTTGCAATAAGATGTTCATAATTTTACCTATTGTCACACTTTTGTAACCATCATCTTATTCATTTAAAAATCAAGAGCATTTCATTTCATATTGTATATGTTGTTTGAGCAGATCATAGGGATTCTGTACCTGA
TCTTTTCCTCTGTATAAAGATATTTTTAAATGCATGGGATGGAAATTATATATTGGATTAGAATGCCACATGTGCATAAATTAGAAACAGTCCTTGTTTTAGTCAAATATGTTACTACTGTAGGAGTAAGCATAGTGTTCCCAATTATTTTACTTTCGATTATGAAAGTAACACTGATCTTAGTTTATTTTAGGCATTTG
ACGGGC
Intron 2 GTAAGTATGC ... TTTGTGGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 49.21 | 16 | 7 | 24 |
| A2 | 44.93 | 19 | 5 | 26 |
| A3 | 66.67 | 6 | 4 | 20 |
| A4 | 55.56 | 8 | 7 | 13 |
| A5 | 42.86 | 4 | 0 | 6 |
| A6 | 100 | 0 | 0 | 1 |
| A7 | 56.1 | 9 | 8 | 15 |
| A8 | 64.71 | 6 | 11 | 11 |
| A9 | 100 | 0 | 2 | 5 |
| A10 | 62.96 | 10 | 7 | 27 |
>TRINITY_DN113724_c0_g1_i3 from sample A1 / Example spliced isoformCAGTTGCGTCCCAGTTCGAATTTTTTAGCCTAGCTTTGAGCTAGTTTGTATTATTTTTCTCAATTATGCTATTGTGATCCCTGTCGCTATCAGATTTGACATTTCCTGGTTTTGAGGTTATTTTTGGTTGTGTTCTGCTCTATTTTTAAGCGTCACCTCTTTCATGTAAAATATTACCTCTCAGACTTTCTTTTGATAGA
AACTGCCGCTTCTCCTTGTGCTTGCTTGAGCTAGTCTTGCGTGTGAAGTCTTTCGTTAACATCTGCAAGGGTTTTATTTTTCAAATACTATGATATGGTCTAGTTCTCCGTTTAAGCGGCCGAATAATTTGAAGGCAGTGCTTTGTGGTCCCGGCTGGTAAACAAGATGAATGTAGGCGGAGGTGGAGGCAGAAGCAAAA
ACAGGAGCAAAAACAAAAACCAGAAACAGGATAGACTTTCCCCTCCAGCAAATGAGGGAGTTACAAATGGAGGCCCTAACTGTGGCAAAGATAATGAAGTATCCATCTCGGGCGAAGCAGCCCCGTTGCAGATCCTTAATAAACGTCTTCTTGGTCAAATCACGAGCTTAAGAGAAGAAAATGGTACTTTGAAAGAGAAA
CTCATTCAAATGGAATCACGAGTCAATCAAATGCCGAGTTTAGGAGAAGAAAATGGTACTTTGGAAGAGAAGCTCATTCAAATGCAAGCACAAATCAGCAATCTTGAAGCTCTGAAAACGAATTTGCAGTCTGAGAGGGATAATCTGCATGGTGAACAGGTGCAACTAAAAGAGCAATTGGAGGAATGCAGAAGAGAAAC
TGAACAGCTCAAGGAACGCTCGGAGGTATGTGAGAGAGAAATTAAGTCCAGCCATGCAGTTCAAAGTAACCTAGAAGCTACTGTTTTCGAGTTGAGAGATCAAATTCAGGTGAAATCTGCAGAGTTAGAGGCAGCACGCAAAGCTTGGGAATTGGAAAAGGATGAGCTTTTATCACAGACTGTAGAAGCAAGAAAGGAGT
CTGAGAAAAGTATTCAGAACTTACATGGAGAAATGGAAGAAAACCAGCATTTGTGGAATGCTGAAAAGACAAATTTGGAAAGCACTGTTGCAGAGCTACAAACAAAGCTTGATATGATAGATAATGAAAGGAAATTACTGAGTCAGAAAAATACAGAGCTAAGCACTGAAGCACAGTCCTTGGAGGTCCAGTTGAACGAG
AGTGAATCTAAGTTGAATGACTCCAAGGGAGAGACTAAGGAATTGTACAGAAAAATTAAAGAAGATCGGCACCTGTGGGATGCTGAAAAGAGTGATTTGGAAGGAATTGTTAGTGAGCTCAAAACAAAGTTTGACTTGATGGCTAGTGAAAAGTTATCTGTGGGCCGGAAAAATGGAGAGCTAAGTGCTGAAGTGGAGTC
CTTGAAATCTCTGTTGAATGAATCCAAGGGAACGACTCAGGAATTACATGAAAAGATTGAAGAATGTCAGAATTCGCGGGCTGCTGAAAAGAGCAATCTGGAAAGCATTGTTGCAGAGCTGAAAACCAAGCTTGATTCTGTGGCTAGTGAAAGGGTATCTCTGAGCCAGACAAATGGAGAGCTGATTAATAAAGCAGAGT
CCTTGAAGGTCCAGTTGAATGAGTTGCAATCTAATTTGGATGACTCCAAGGGAAGGACTCTGGAACTGTGCGGAGAAATTGAAAAAGATCGGTGTCTGTGGGATGTTGAAAAGAATAACTTGGAAGGTGCTGTTACAAAGTTGCAATCAAAGTTTGATTTGATAGATAGTGAAAGGGAAATATTGAGCCAGAAAAATACA
GATCTAAGCACTGAAATGCAGTCCTTGAAGACAGAGTTGGTTGCAGCAAAGGAAGTATATGATGAAGCCAGTGTTCACCTGAATATGATTAAAGAAGAAAAAGAGGCTTTAGATGAGAAATTAATGCTACAGATCTCTAGAAATAATGCACTTGAAGAAGAGTTGTTCTCAACAAAGTTTTCTTTCGAAGAAATGAAGGA
ATTTGCTTCCAAGGGTGAACAACAAATAGTTAATTTGCAGAGTCGGCTTTCAGCTATGGCAGAGGAGAAAGCAAGTGAAATAACTGATTTACAGGGTCAGCTCTCATCCCTTGCTAAGGCAAAAATGCTCACTGAGGAGAAAAATTCTGAACTGGAAAGAGGAAAATTGGTTTTGGAAGAAGAGCAGCCATTCCTTAAGG
ACAAAATAAGGGAGTTGGAAACAGCCATCAAATCTCTCGATGAGGATCTTAAAGCTTCTAGGGCCATGACAGTGGAGAAAGAAGGCCAATTTTCTTGTTTACAATATCAGCTCTCAGACCTTGCTGAGGAGAAAAAGTGCCTCGAGGAGAAAGTGAACAGCACTGTTGCAGAGCTACAAATAAAGCTTGATCTGATGGAT
AGTGAAAGGGAATTACTGAGCCACAAAAGTATAGAGCTAAACACTGAATTGCAGTCCTTGAATACAGAACTGGTGGCAGCAAAGTCAGCATATGATACAGCGACTACTCACCTGAATAATATTAAAGAAGAAAAAGAGGCTTTAGATGAGAAATTGACAACACAGCTCTCTAGAAATAATGCTCTTGAAGAAGAGTTGTT
GTCAACAAAGTCTTCCTTAGAAGCAATGAAGGAATCTGCTTCCAAGGGTGAGCAACAAATAGCTAATTTGCAGAGTCAGCTCCTAGCTGTTGAAGAGAAAAAAGATGGTCAAATTTTTGATATACAGAGTCAGTTTTCAGCCATGGCAGAGGAGAAAAGAAGCCAATTAGCTGATTTACAAGATCAGCTCTCAGCCCTTA
CTGAGGCTAAAATGTTCCTTGAGGAGAAAAATGTTAAACTGCAAAGAGAAATACTAGTTTCAGAAAAAGAGCAGCTACGCCTTGAGGGCGGAATAAGGGATCGTGAAGCTTCTATGGCAATTGCAGCAAAGAAAGAGGGCCAGTTATCTGGTTTACAATATCAACTCTCAGACCTTGCTGCGGAGAAAAAGTGTCTAGAG
GAGAAATACAATTCTTTACTGACTAAATTGAATAAATGTACATTGGTTTCAGAAGAAAATGTCCATCTTCAGGACAGAATAAAGGAATTGGAGACTCATGTGGATTCTCTCACTAGGGATTTTGAAAGTAGAGATATTATGCTCCAGAAGTTTAAGTCAGAACGTCAAGATTCTCAGTTACCTGAATGTGCCGAAAATGG
AAAGCCAAACTGCGTGCATGCCACTGGAGAACCAAATTGTGTGCCTGGAAAACCAAAGCCAAAGCCAGCCTTTGAAAAGCAAAAGCCAAAAAGGTATTATGCATGGTCTGCTGTAGCATCTACGGGTGCTCTAGCTGCAGCAGTAGTTACAGCTTACCTCAAGTTCTCAAAGTAAGAACTGAATCTGACTTTTCCTTTTG
CATAGTCTTCGCAACCATCAGTATTTTGCTATAACTACTTCTGATGTGTTGCAATAAGATGTTCATAATTTTACCTATTGTCACACTTTTGTAACCATCATCTTATTCATTTAAAAATCAAGAGCATTTCATTTCATATTGTATATGTTGTTTGAGCAGATCATAGGGATTCTGTACCTGATCTTTTCCTCTGTATAAAG
ATATTTTTAAATGCATGGGATGGAAATTATATATTGGATTAGAATGCCACATGTGCATAAATT
>TRINITY_DN113724_c0_g1_i4 from sample A1 / Example unspliced isoform:CAGTTGCGTCCCAGTTCGAATTTTTTAGCCTAGCTTTGAGCTAGTTTGTATTATTTTTCTCAATTATGCTATTGTGATCCCTGTCGCTATCAGATTTGACATTTCCTGGTTTTGAGGTTATTTTTGGTTGTGTTCTGCTCTATTTTTAAGCGTCACCTCTTTCATGTAAAATATTACCTCTCAGACTTTCTTTTGATAGA
AACTGCCGCTTCTCCTTGTGCTTGCTTGAGCTAGTCTTGCGTGTGAAGTCTTTCGTTAACATCTGCAAGGGTTTTATTTTTCAAATACTATGATATGGTCTAGTTCTCCGTTTAAGCGGCCGAATAATTTGAAGGCAGTGCTTTgtaagtatgcgaatgcgtttttgtttttgaagatttggagtagataagagaagtat
agatttttctctgtttgtggcagGTGGTCCCGGCTGGTAAACAAGATGAATGTAGGCGGAGGTGGAGGCAGAAGCAAAAACAGGAGCAAAAACAAAAACCAGAAACAGGATAGACTTTCCCCTCCAGCAAATGAGGGAGTTACAAATGGAGGCCCTAACTGTGGCAAAGATAATGAAGTATCCATCTCGGGCGAAGCAGC
CCCGTTGCAGATCCTTAATAAACGTCTTCTTGGTCAAATCACGAGCTTAAGAGAAGAAAATGGTACTTTGAAAGAGAAACTCATTCAAATGGAATCACGAGTCAATCAAATGCCGAGTTTAGGAGAAGAAAATGGTACTTTGGAAGAGAAGCTCATTCAAATGCAAGCACAAATCAGCAATCTTGAAGCTCTGAAAACGA
ATTTGCAGTCTGAGAGGGATAATCTGCATGGTGAACAGGTGCAACTAAAAGAGCAATTGGAGGAATGCAGAAGAGAAACTGAACAGCTCAAGGAACGCTCGGAGGTATGTGAGAGAGAAATTAAGTCCAGCCATGCAGTTCAAAGTAACCTAGAAGCTACTGTTTTCGAGTTGAGAGATCAAATTCAGGTGAAATCTGCA
GAGTTAGAGGCAGCACGCAAAGCTTGGGAATTGGAAAAGGATGAGCTTTTATCACAGACTGTAGAAGCAAGAAAGGAGTCTGAGAAAAGTATTCAGAACTTACATGGAGAAATGGAAGAAAACCAGCATTTGTGGAATGCTGAAAAGACAAATTTGGAAAGCACTGTTGCAGAGCTACAAACAAAGCTTGATATGATAGA
TAATGAAAGGAAATTACTGAGTCAGAAAAATACAGAGCTAAGCACTGAAGCACAGTCCTTGGAGGTCCAGTTGAACGAGAGTGAATCTAAGTTGAATGACTCCAAGGGAGAGACTAAGGAATTGTACAGAAAAATTAAAGAAGATCGGCACCTGTGGGATGCTGAAAAGAGTGATTTGGAAGGAATTGTTAGTGAGCTCA
AAACAAAGTTTGACTTGATGGCTAGTGAAAAGTTATCTGTGGGCCGGAAAAATGGAGAGCTAAGTGCTGAAGTGGAGTCCTTGAAATCTCTGTTGAATGAATCCAAGGGAACGACTCAGGAATTACATGAAAAGATTGAAGAATGTCAGAATTCGCGGGCTGCTGAAAAGAGCAATCTGGAAAGCATTGTTGCAGAGCTG
AAAACCAAGCTTGATTCTGTGGCTAGTGAAAGGGTATCTCTGAGCCAGACAAATGGAGAGCTGATTAATAAAGCAGAGTCCTTGAAGGTCCAGTTGAATGAGTTGCAATCTAATTTGGATGACTCCAAGGGAAGGACTCTGGAACTGTGCGGAGAAATTGAAAAAGATCGGTGTCTGTGGGATGTTGAAAAGAATAACTT
GGAAGGTGCTGTTACAAAGTTGCAATCAAAGTTTGATTTGATAGATAGTGAAAGGGAAATATTGAGCCAGAAAAATACAGATCTAAGCACTGAAATGCAGTCCTTGAAGACAGAGTTGGTTGCAGCAAAGGAAGTATATGATGAAGCCAGTGTTCACCTGAATATGATTAAAGAAGAAAAAGAGGCTTTAGATGAGAAAT
TAATGCTACAGATCTCTAGAAATAATGCACTTGAAGAAGAGTTGTTCTCAACAAAGTTTTCTTTCGAAGAAATGAAGGAATTTGCTTCCAAGGGTGAACAACAAATAGTTAATTTGCAGAGTCGGCTTTCAGCTATGGCAGAGGAGAAAGCAAGTGAAATAACTGATTTACAGGGTCAGCTCTCATCCCTTGCTAAGGCA
AAAATGCTCACTGAGGAGAAAAATTCTGAACTGGAAAGAGGAAAATTGGTTTTGGAAGAAGAGCAGCCATTCCTTAAGGACAAAATAAGGGAGTTGGAAACAGCCATCAAATCTCTCGATGAGGATCTTAAAGCTTCTAGGGCCATGACAGTGGAGAAAGAAGGCCAATTTTCTTGTTTACAATATCAGCTCTCAGACCT
TGCTGAGGAGAAAAAGTGCCTCGAGGAGAAAGTGAACAGCACTGTTGCAGAGCTACAAATAAAGCTTGATCTGATGGATAGTGAAAGGGAATTACTGAGCCACAAAAGTATAGAGCTAAACACTGAATTGCAGTCCTTGAATACAGAACTGGTGGCAGCAAAGTCAGCATATGATACAGCGACTACTCACCTGAATAATA
TTAAAGAAGAAAAAGAGGCTTTAGATGAGAAATTGACAACACAGCTCTCTAGAAATAATGCTCTTGAAGAAGAGTTGTTGTCAACAAAGTCTTCCTTAGAAGCAATGAAGGAATCTGCTTCCAAGGGTGAGCAACAAATAGCTAATTTGCAGAGTCAGCTCCTAGCTGTTGAAGAGAAAAAAGATGGTCAAATTTTTGAT
ATACAGAGTCAGTTTTCAGCCATGGCAGAGGAGAAAAGAAGCCAATTAGCTGATTTACAAGATCAGCTCTCAGCCCTTACTGAGGCTAAAATGTTCCTTGAGGAGAAAAATGTTAAACTGCAAAGAGAAATACTAGTTTCAGAAAAAGAGCAGCTACGCCTTGAGGGCGGAATAAGGGATCGTGAAGCTTCTATGGCAAT
TGCAGCAAAGAAAGAGGGCCAGTTATCTGGTTTACAATATCAACTCTCAGACCTTGCTGCGGAGAAAAAGTGTCTAGAGGAGAAATACAATTCTTTACTGACTAAATTGAATAAATGTACATTGGTTTCAGAAGAAAATGTCCATCTTCAGGACAGAATAAAGGAATTGGAGACTCATGTGGATTCTCTCACTAGGGATT
TTGAAAGTAGAGATATTATGCTCCAGAAGTTTAAGTCAGAACGTCAAGATTCTCAGTTACCTGAATGTGCCGAAAATGGAAAGCCAAACTGCGTGCATGCCACTGGAGAACCAAATTGTGTGCCTGGAAAACCAAAGCCAAAGCCAGCCTTTGAAAAGCAAAAGCCAAAAAGGTATTATGCATGGTCTGCTGTAGCATCT
ACGGGTGCTCTAGCTGCAGCAGTAGTTACAGCTTACCTCAAGTTCTCAAAGTAAGAACTGAATCTGACTTTTCCTTTTGCATAGTCTTCGCAACCATCAGTATTTTGCTATAACTACTTCTGATGTGTTGCAATAAGATGTTCATAATTTTACCTATTGTCACACTTTTGTAACCATCATCTTATTCATTTAAAAATCAA
GAGCATTTCATTTCATATTGTATATGTTGTTTGAGCAGATCATAGGGATTCTGTACCTGATCTTTTCCTCTGTATAAAGATATTTTTAAATGCATGGGATGGAAATTATATATTGGATTAGAATGCCACATGTGCATAAATT
Intron 3 GTATTTTTCT ... TTTGTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 42.86 | 18 | 15 | 12 |
| A2 | 31.15 | 21 | 18 | 1 |
| A3 | 50 | 9 | 12 | 6 |
| A4 | 50 | 12 | 18 | 6 |
| A5 | 63.64 | 2 | 1 | 6 |
| A6 | -1 | 0 | 0 | 0 |
| A7 | 68.75 | 5 | 12 | 10 |
| A8 | 58.33 | 5 | 7 | 7 |
| A9 | 28 | 9 | 6 | 1 |
| A10 | 48.39 | 16 | 24 | 6 |
>TRINITY_DN113724_c0_g1_i6 from sample A1 / Example spliced isoformCGCTCATCTCCATTCAAAATTTTGGCCGACTCTTCTACATAAATACCCTTATTAGGTGAATCCACTTAACTAACAATGTCATTATTCGGCGTATTTCTATTCTCTCTCTGAAACTTGTGCCACTCGAGGATAAGGCCTGCAGAACGAAACGTTGCTAGGGTTTCATCGGCACCACATTCAAAATATTTCATATTTTTGCA
GTGCTCCTGTGCCGGTCAAGCTTCCGCGGTAGAAACTCATATATGCTTCCCGCTGGTTTGGCGGAGGCCTTGCAGGAGAAGTAATCATCGGAGGAAAGGTCTTTTATCAGGTTCTTTCCCCGTTTTAACCAGCGGCTTTTTTCTTTTGATTTCCACGACACAGTTTCCTTCTTGCAAACAGTTCCGCCGGCGGAAGTTAA
ATTTTTTTTGGTTAGCTTTGAGCTAGCTTTGTTTACTTTTTCTTTATTCTGCTATTGCGAGCTCTGCCGCTATCATATTTAAAATTTTCAAGTTTTTTCAGTAGTTTTGGTGTCGTTATTGTCAACATCATTGTTTTACCCTTTTATCCTGCTTTAAATGAAAAATTTGTGGCATATTCCTTATTGCAAACAGTTTTTCT
CCTTACTTCAAAACATTTTGTCTAGCTTTGATCTACTTTTTTTGTTCTTTATTTCTCTATTGCGAGCTCTGCGGCTAACTGTCTAGGTTTATGCCGTAACTTTGTTTTGGTTATCGTCAACGTCAATATCTTGCCCTTTTATCGGTTTTTGATGCATTATTTGTATTTTCCTTCTTGCAGACATTTTCGGCCCGAAAAAA
GTCGTGTAGCTTTAAGCTAGTGTTGTTTCATTTTTCTTTATTTTGCTATCGTGAACTCTGTGGCTATAATATTTAACATTTCCAGCCGCTTTAATGTAACTTTGGTGCTTTAATCGTCAACGTCATTGTTTTTCCATTTTATCGCTTTTATCATGCAGTACTTCAAATTTTGTGACATTTTCATTTTTGCAGACAGTCCT
ATCCTTGGGATAAAAAATATGGGCTAGCTTTGAGCTAGTATTTTTTTAGGTTTATTTATTTAATTTTATATCGCTATTTTTATCTCTGCAGCTATCATATTTAAAATTTCTAGGTTTTTTACTGCAACATTAGTGCTTTTATCAT
>TRINITY_DN113724_c0_g1_i2 from sample A1 / Example unspliced isoform:CGCTCATCTCCATTCAAAATTTTGGCCGACTCTTCTACATAAATACCCTTATTAGGTGAATCCACTTAACTAACAATGTCATTATTCGGCGTATTTCTATTCTCTCTCTGAAACTTGTGCCACTCGAGGATAAGGCCTGCAGAACGAAACGTTGCTAGGGTTTCATCGGCACCACATTCAAAATATTTCATATTTTTGCA
GTGCTCCTGTGCCGGTCAAGCTTCCGCGGTAGAAACTCATATATGCTTCCCGCTGGTTTGGCGGAGGCCTTGCAGGAGAAGTAATCATCGGAGGAAAGGTCTTTTATCAGGTTCTTTCCCCGTTTTAACCAGCGGCTTTTTTCTTTTGATTTCCACGACACAGgtatttttctactctgtttttaaatatttttgaagct
tttgctgtaacattggtgccgttatcgataatgtcactgttttgtcttgtttttatgcattatttgtaaattttgttgcagTTTCCTTCTTGCAAACAGTTCCGCCGGCGGAAGTTAAATTTTTTTTGGTTAGCTTTGAGCTAGCTTTGTTTACTTTTTCTTTATTCTGCTATTGCGAGCTCTGCCGCTATCATATTTAA
AATTTTCAAGTTTTTTCAGTAGTTTTGGTGTCGTTATTGTCAACATCATTGTTTTACCCTTTTATCCTGCTTTAAATGAAAAATTTGTGGCATATTCCTTATTGCAAACAGTTTTTCTCCTTACTTCAAAACATTTTGTCTAGCTTTGATCTACTTTTTTTGTTCTTTATTTCTCTATTGCGAGCTCTGCGGCTAACTGT
CTAGGTTTATGCCGTAACTTTGTTTTGGTTATCGTCAACGTCAATATCTTGCCCTTTTATCGGTTTTTGATGCATTATTTGTATTTTCCTTCTTGCAGACATTTTCGGCCCGAAAAAAGTCGTGTAGCTTTAAGCTAGTGTTGTTTCATTTTTCTTTATTTTGCTATCGTGAACTCTGTGGCTATAATATTTAACATTTC
CAGCCGCTTTAATGTAACTTTGGTGCTTTAATCGTCAACGTCATTGTTTTTCCATTTTATCGCTTTTATCATGCAGTACTTCAAATTTTGTGACATTTTCATTTTTGCAGACAGTCCTATCCTTGGGATAAAAAATATGGGCTAGCTTTGAGCTAGTATTTTTTTAGGTTTATTTATTTAATTTTATATCGCTATTTTTA
TCTCTGCAGCTATCATATTTAAAATTTCTAGGTTTTTTACTGCAACATTAGTGCTTTTATCAT
Intron 4 GTATTTTTCT ... TTTGTGGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 30.71 | 44 | 15 | 24 |
| A2 | 21.78 | 79 | 18 | 26 |
| A3 | 18.18 | 72 | 12 | 20 |
| A4 | 28.44 | 39 | 18 | 13 |
| A5 | 13.73 | 22 | 1 | 6 |
| A6 | 33.33 | 1 | 0 | 1 |
| A7 | 36.99 | 23 | 12 | 15 |
| A8 | 47.37 | 10 | 7 | 11 |
| A9 | 20.75 | 21 | 6 | 5 |
| A10 | 37.23 | 43 | 24 | 27 |
>TRINITY_DN41107_c0_g1_i2 from sample A7 / Example spliced isoformCGTTGGCGCTCATCTCCATTCAAAATTTTGGCCGACTCTTCTACATAAATACCCTTATTAGGTGAATCCACTTAACTAACAATGTCATTATTCGGCGTATTTCTATTCTCTCTCTGAAACTTGTGCCACTCGAGGATAAGGCCTGCAGAACGAAACGTTGCTAGGGTTTCATCGGCACCACATTCAAAATATTTCATATT
TTTGCAGTGCTCCTGTGCCGGTCAAGCTTCCGCGGTAGAAACTCATATATGCTTCCCGCTGGTTTGGCGGAGGCCTTGCAGGAGAAGTAATCATCGGAGGAAAGGTCTTTTATCAGGTTCTTTCCCCGTTTTAACCAGCGGCTTTTTTCTTTTGATTTCCACGACACAGGTGGTCCCGGCTGGTAAACAAGATGAATGTA
GGCGGAGGTGGAGGCAGAAGCAAAAACAGGAGCAAAAACAAAAACCAGAAACAGGATAGACTTTCCCCTCCAGCAAATGAGGGAGTTACAAATGGAGGCCCTAACTGTGGCAAAGATAATGAAGTATCCATCTCGGGCGAAGCAGCCCCGTTGCAGATCCTTAATAAACGTCTTCTTGGTCAAATCACGAGCTTAAGAGA
AGAAAATGGTACTTTGAAAGAGAAACTCATTCAAATGGAATCACGAGTCAATCAAATGCCGAGTTTAGGAGAAGAAAATGGTACTTTGGAAGAGAAGCTCATTCAAATGCAAGCACAAATCAGCAATCTTGAAGCTCTGAAAACGAATTTGCAGTCTGAGAGGGATAATCTGCATGGTGAACAGGTGCAACTAAAAGAGC
AATTGGAGGAATGCAGAAGAGAAACTGAACAGCTCAAGGAACGCTCGGAGGTATGTGAGAGAGAAATTAAGTCCAGCCATGCAGTTCAAAGTAACCTAGAAGCTACTGTTTTCGAGTTGAGAGATCAAATTCAGGTGAAATCTGCAGAGTTAGAGGCAGCACGCAAAGCTTGGGAATTGGAAAAGGATGAGCTTTTATCA
CAGACTGTAGAAGCAAGAAAGGAGTCTGAGAAAAGTATTCAGAACTTACATGGAGAAATGGAAGAAAACCAGCATTTGTGGAATGCTGAAAAGACAAATTTGGAAAGCACTGTTGCAGAGCTACAAACAAAGCTTGATATGATAGATAATGAAAGGAAATTACTGAGTCAGAAAAATACAGAGCTAAGCACTGAAGCACA
GTCCTTGGAGGTCCAGTTGAACGAGAGTGAATCTAAGTTGAATGACTCCAAGGGAGAGACTAAGGAATTGTACAGAAAAATTAAAGAAGATCGGCACCTGTGGGATGCTGAAAAGAGTGATTTGGAAGGAATTGTTAGTGAGCTCAAAACAAAGTTTGACTTGATGGCTAGTGAAAAGTTATCTGTGGGCCGGAAAAATG
GAGAGCTAAGTGCTGAAGTGGAGTCCTTGAAATCTCTGTTGAATGAATCCAAGGGAACGACTCAGGAATTACATGAAAAGATTGAAGAATGTCAGAATTCGCGGGCTGCTGAAAAGAGCAATCTGGAAAGCATTGTTGCAGAGCTGAAAACCAAGCTTGATTCTGTGGCTAGTGAAAGGGTATCTCTGAGCCAGACAAAT
GGAGAGCTGATTAATAAAGCAGAGTCCTTGAAGGTCCAGTTGAATGAGTTGCAATCTAATTTGGATGACTCCAAGGGAAGGACTCTGGAACTGTGCGGAGAAATTGAAAAAGATCGGTGTCTGTGGGATGTTGAAAAGAATAACTTGGAAGGTGCTGTTACAAAGTTGCAATCAAAGTTTGATTTGATAGATAGTGAAAG
GGAAATATTGAGCCAGAAAAATACAGATCTAAGCACTGAAATGCAGTCCTTGAAGACAGAGTTGGTTGCAGCAAAGGAAGTATATGATGAAGCCAGTGTTCACCTGAATATGATTAAAGAAGAAAAAGAGGCTTTAGATGAGAAATTAATGCTACAGATCTCTAGAAATAATGCACTTGAAGAAGAGTTGTTCTCAACAA
AGTTTTCTTTCGAAGAAATGAAGGAATTTGCTTCCAAGGGTGAACAACAAATAGTTAATTTGCAGAGTCGGCTTTCAGCTATGGCAGAGGAGAAAGCAAGTGAAATAACTGATTTACAGGGTCAGCTCTCATCCCTTGCTAAGGCAAAAATGCTCACTGAGGAGAAAAATTCTGAACTGGAAAGAGGAAAATTGGTTTTG
GAAGAAGAGCAGCCATTCCTTAAGGACAAAATAAGGGAGTTGGAAACAGCCATCAAATCTCTCGATGAGGATCTTAAAGCTTCTAGGGCCATGACAGTGGAGAAAGAAGGCCAATTTTCTTGTTTACAATATCAGCTCTCAGACCTTGCTGAGGAGAAAAAGTGCCTCGAGGAGAAAGTGAACAGCACTGTTGCAGAGCT
ACAAATAAAGCTTGATCTGATGGATAGTGAAAGGGAATTACTAAGCCACAAAAGTATAGAGCTAAACACTGAATTGCAGTCCTTGAATACAGAACTGGTGGCAGCAAAGTCAGCATATGATACAGCGACTACTCACCTGAATAATATTAAAGAAGAAAAAGAGGCTTTAGATGAGAAATTGACAACACAGCTCTCTAGAA
ATAATGCTCTTGAAGAAGAGTTGTTGTCAACAAAGTCTTCCTTAGAAGCAATGAAGGAATCTGCTTCCAAGGGTGAGCAACAAATAGCTAATTTGCAGAGTCAGCTCCTAGCTGTTGAAGAGAAAAAAGATGGTCAAATTTTTGATATACAGAGTCAGTTTTCAGCCATGGCAGAGGAGAAAAGAAGCCAATTAGCTGAT
TTACAAGATCAGCTCTCAGCCCTTACTGAGGCTAAAATGTTCCTTGAGGAGAAAAATGTTAAACTGCAAAGAGAAATACTAGTTTCAGAAAAAGAGCAGCTACGCCTTGAGGGCGGAATAAGGGATCGTGAAGCTTCTATGGCAATTGCAGCAAAGAAAGAGGGCCAGTTATCTGGTTTACAATATCAACTCTCAGACCT
TGCTGCGGAGAAAAAGTGTCTAGAGGAGAAATACAATTCTTTACTGACTAAATTGAATAAATGTACATTGGTTTCAGAAGAAAATGTCCATCTTCAGGACAGAATAAAGGAATTGGAGACTCATGTGGATTCTCTCACTAGGGATTTTGAAAGTAGAGATATTATGCTCCAGAAGTTTAAGTCAGAACGTCAAGATTCTC
AGTTACCTGAATGTGCCGAAAATGGAAAGCCAAACTGCGTGCATGCCACTGGAGAACCAAATTGTGTGCCTGGAAAACCAAAGCCAAAGCCAGCCTTTGAAAAGCAAAAGCCAAAAAGGTATTATGCATGGTCTGCTGTAGCATCTACCGGTGCTCTAGCTGCAGCAGTAGTTACAGCTTACCTCAAGTTCTCAAAGTAA
GAACTGAATCTGACTTTTCCTTTTGCATAGTCTTCGCAACCATCAGTATTTTGCTATAACTACTTCTGATGTGTTGCAATAAGATGTTCATAATTTTACCTATTGTCACACTTTTGTAACCATCATCTTATTCATTTAAAAATCAAGAGCATTTCATTTCATATTGTATATGTTGTTTGAGCAGATCATAGGGATTCTGT
ACCTGATCTTTTCCTCTGTATAAAGATATTTTTAAATGCATGGGATGGAAATTATATATTGGATTAGAATGCCACATGTGCATAAATTAGAAACAGTCCTTGTTTTAGTCAAATATGTTACTACTGTAGGAGTAAGCATCGTGTTCCCAATTATTTTACTTTCGATTATGAAAGTAACACTGATCTTAGTTTATTTTAGG
CATTTGACGGGGCGC
>TRINITY_DN41107_c0_g1_i1 from sample A7 / Example unspliced isoform:CGTTGGCGCTCATCTCCATTCAAAATTTTGGCCGACTCTTCTACATAAATACCCTTATTAGGTGAATCCACTTAACTAACAATGTCATTATTCGGCGTATTTCTATTCTCTCTCTGAAACTTGTGCCACTCGAGGATAAGGCCTGCAGAACGAAACGTTGCTAGGGTTTCATCGGCACCACATTCAAAATATTTCATATT
TTTGCAGTGCTCCTGTGCCGGTCAAGCTTCCGCGGTAGAAACTCATATATGCTTCCCGCTGGTTTGGCGGAGGCCTTGCAGGAGAAGTAATCATCGGAGGAAAGGTCTTTTATCAGGTTCTTTCCCCGTTTTAACCAGCGGCTTTTTTCTTTTGATTTCCACGACACAGgtatttttctactctgtttttaaatattttt
gaagcttttgctgtaacattggtgccgttatcgataatgtcactgttttgtcttgtttttatgcattatttgtaaattttgttgcagtttccttcttgcaaacagttccgccggcggaagttaaattttttttggttagctttgagctagctttgtttactttttctttattctgctattgcgagctctgccgctatcat
atttaaaattttcaagttttttcagtagttttggtgtcgttattgtcaacatcattgttttacccttttatcctgctttaaatgaaaaatttgtggcatattccttattgcaaacagtttttctccttccttcaaaacattttgtctagctttgatctactttttttgttctttatttctctattgcgagctctgcggct
aactgtctaggtttatgccgtaactttgttttggttatcgtcaacgtcaatatcttgcccttttatcggtttttgatgcattatttgtattttccttcttgcagacattttcggcccgaaaaaagtcgtgtagctttaagctagtgttgtttcatttttctttattttgctatcgtgaactctgtggctataatatttaa
catttccagccgctttaatgtaactttggtgctttaatcgtcaacgtcattgtttttccattttatcgcttttatcatgcagtacttcaaattttgtgacattttcatttttgcagacagtcctatccttgggataaaaaatatgggctagctttgagctagtatttttttaggtttatttatttaattttatatcgcta
tttttatctctgcagctatcatatttaaaatttctaggttttttactgcaacattagtgcttttatcatcattatcaatcttttgccatattatcgcttttatcatgcattatttcaaaattttgtaataattttcttcttggagacagttgcgtcccagttcgaattttttagcctagctttgagctagtttgtattat
ttttctcaattatgctattgtgatccctgtcgctatcagatttgacatttcctggttttgaggttatttttggttgtgttctgctctatttttaagcgtcacctctttcatgtaaaatattacctctcagactttcttttgatagaaactgccgcttctccttgtgcttgcttgagctagtcttgcgtgtgaagtctttc
gttaacatctgcaagggttttatttttcaaatactatgatatggtctagttctccgtttaagcggccgaataatttgaaggcagtgctttgtaagtatgcgaatgcgtttttgtttttgaagatttggagtagataagagaagtatagatttttctctgtttgtggcagGTGGTCCCGGCTGGTAAACAAGATGAATGTA
GGCGGAGGTGGAGGCAGAAGCAAAAACAGGAGCAAAAACAAAAACCAGAAACAGGATAGACTTTCCCCTCCAGCAAATGAGGGAGTTACAAATGGAGGCCCTAACTGTGGCAAAGATAATGAAGTATCCATCTCGGGCGAAGCAGCCCCGTTGCAGATCCTTAATAAACGTCTTCTTGGTCAAATCACGAGCTTAAGAGA
AGAAAATGGTACTTTGAAAGAGAAACTCATTCAAATGGAATCACGAGTCAATCAAATGCCGAGTTTAGGAGAAGAAAATGGTACTTTGGAAGAGAAGCTCATTCAAATGCAAGCACAAATCAGCAATCTTGAAGCTCTGAAAACGAATTTGCAGTCTGAGAGGGATAATCTGCATGGTGAACAGGTGCAACTAAAAGAGC
AATTGGAGGAATGCAGAAGAGAAACTGAACAGCTCAAGGAACGCTCGGAGGTATGTGAGAGAGAAATTAAGTCCAGCCATGCAGTTCAAAGTAACCTAGAAGCTACTGTTTTCGAGTTGAGAGATCAAATTCAGGTGAAATCTGCAGAGTTAGAGGCAGCACGCAAAGCTTGGGAATTGGAAAAGGATGAGCTTTTATCA
CAGACTGTAGAAGCAAGAAAGGAGTCTGAGAAAAGTATTCAGAACTTACATGGAGAAATGGAAGAAAACCAGCATTTGTGGAATGCTGAAAAGACAAATTTGGAAAGCACTGTTGCAGAGCTACAAACAAAGCTTGATATGATAGATAATGAAAGGAAATTACTGAGTCAGAAAAATACAGAGCTAAGCACTGAAGCACA
GTCCTTGGAGGTCCAGTTGAACGAGAGTGAATCTAAGTTGAATGACTCCAAGGGAGAGACTAAGGAATTGTACAGAAAAATTAAAGAAGATCGGCACCTGTGGGATGCTGAAAAGAGTGATTTGGAAGGAATTGTTAGTGAGCTCAAAACAAAGTTTGACTTGATGGCTAGTGAAAAGTTATCTGTGGGCCGGAAAAATG
GAGAGCTAAGTGCTGAAGTGGAGTCCTTGAAATCTCTGTTGAATGAATCCAAGGGAACGACTCAGGAATTACATGAAAAGATTGAAGAATGTCAGAATTCGCGGGCTGCTGAAAAGAGCAATCTGGAAAGCATTGTTGCAGAGCTGAAAACCAAGCTTGATTCTGTGGCTAGTGAAAGGGTATCTCTGAGCCAGACAAAT
GGAGAGCTGATTAATAAAGCAGAGTCCTTGAAGGTCCAGTTGAATGAGTTGCAATCTAATTTGGATGACTCCAAGGGAAGGACTCTGGAACTGTGCGGAGAAATTGAAAAAGATCGGTGTCTGTGGGATGTTGAAAAGAATAACTTGGAAGGTGCTGTTACAAAGTTGCAATCAAAGTTTGATTTGATAGATAGTGAAAG
GGAAATATTGAGCCAGAAAAATACAGATCTAAGCACTGAAATGCAGTCCTTGAAGACAGAGTTGGTTGCAGCAAAGGAAGTATATGATGAAGCCAGTGTTCACCTGAATATGATTAAAGAAGAAAAAGAGGCTTTAGATGAGAAATTAATGCTACAGATCTCTAGAAATAATGCACTTGAAGAAGAGTTGTTCTCAACAA
AGTTTTCTTTCGAAGAAATGAAGGAATTTGCTTCCAAGGGTGAACAACAAATAGTTAATTTGCAGAGTCGGCTTTCAGCTATGGCAGAGGAGAAAGCAAGTGAAATAACTGATTTACAGGGTCAGCTCTCATCCCTTGCTAAGGCAAAAATGCTCACTGAGGAGAAAAATTCTGAACTGGAAAGAGGAAAATTGGTTTTG
GAAGAAGAGCAGCCATTCCTTAAGGACAAAATAAGGGAGTTGGAAACAGCCATCAAATCTCTCGATGAGGATCTTAAAGCTTCTAGGGCCATGACAGTGGAGAAAGAAGGCCAATTTTCTTGTTTACAATATCAGCTCTCAGACCTTGCTGAGGAGAAAAAGTGCCTCGAGGAGAAAGTGAACAGCACTGTTGCAGAGCT
ACAAATAAAGCTTGATCTGATGGATAGTGAAAGGGAATTACTAAGCCACAAAAGTATAGAGCTAAACACTGAATTGCAGTCCTTGAATACAGAACTGGTGGCAGCAAAGTCAGCATATGATACAGCGACTACTCACCTGAATAATATTAAAGAAGAAAAAGAGGCTTTAGATGAGAAATTGACAACACAGCTCTCTAGAA
ATAATGCTCTTGAAGAAGAGTTGTTGTCAACAAAGTCTTCCTTAGAAGCAATGAAGGAATCTGCTTCCAAGGGTGAGCAACAAATAGCTAATTTGCAGAGTCAGCTCCTAGCTGTTGAAGAGAAAAAAGATGGTCAAATTTTTGATATACAGAGTCAGTTTTCAGCCATGGCAGAGGAGAAAAGAAGCCAATTAGCTGAT
TTACAAGATCAGCTCTCAGCCCTTACTGAGGCTAAAATGTTCCTTGAGGAGAAAAATGTTAAACTGCAAAGAGAAATACTAGTTTCAGAAAAAGAGCAGCTACGCCTTGAGGGCGGAATAAGGGATCGTGAAGCTTCTATGGCAATTGCAGCAAAGAAAGAGGGCCAGTTATCTGGTTTACAATATCAACTCTCAGACCT
TGCTGCGGAGAAAAAGTGTCTAGAGGAGAAATACAATTCTTTACTGACTAAATTGAATAAATGTACATTGGTTTCAGAAGAAAATGTCCATCTTCAGGACAGAATAAAGGAATTGGAGACTCATGTGGATTCTCTCACTAGGGATTTTGAAAGTAGAGATATTATGCTCCAGAAGTTTAAGTCAGAACGTCAAGATTCTC
AGTTACCTGAATGTGCCGAAAATGGAAAGCCAAACTGCGTGCATGCCACTGGAGAACCAAATTGTGTGCCTGGAAAACCAAAGCCAAAGCCAGCCTTTGAAAAGCAAAAGCCAAAAAGGTATTATGCATGGTCTGCTGTAGCATCTACCGGTGCTCTAGCTGCAGCAGTAGTTACAGCTTACCTCAAGTTCTCAAAGTAA
GAACTGAATCTGACTTTTCCTTTTGCATAGTCTTCGCAACCATCAGTATTTTGCTATAACTACTTCTGATGTGTTGCAATAAGATGTTCATAATTTTACCTATTGTCACACTTTTGTAACCATCATCTTATTCATTTAAAAATCAAGAGCATTTCATTTCATATTGTATATGTTGTTTGAGCAGATCATAGGGATTCTGT
ACCTGATCTTTTCCTCTGTATAAAGATATTTTTAAATGCATGGGATGGAAATTATATATTGGATTAGAATGCCACATGTGCATAAATTAGAAACAGTCCTTGTTTTAGTCAAATATGTTACTACTGTAGGAGTAAGCATCGTGTTCCCAATTATTTTACTTTCGATTATGAAAGTAACACTGATCTTAGTTTATTTTAGG
CATTTGACGGGGCGC