sp|Q9SU91|LPXA_ARATH ----> Probable acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase, mitochondrial
Intron 1 GTAAAAAAGG ... ATCTTGGTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 27.13 | 10.8 | 5.5 | 4 |
| A2 | 17.13 | 24.4 | 4.9 | 5 |
| A3 | 27.97 | 12.9 | 2 | 5 |
| A4 | 24.25 | 12.6 | 4.7 | 4 |
| A5 | 33.33 | 4 | 0.6 | 2 |
| A6 | 12.93 | 28.3 | 4.4 | 4.2 |
| A7 | 12.49 | 52.3 | 6.6 | 7.6 |
| A8 | 13.02 | 63.6 | 11.7 | 9.6 |
| A9 | 16.47 | 45.6 | 7.1 | 9.2 |
| A10 | 14.5 | 65.2 | 7.6 | 11.2 |
>TRINITY_DN117800_c1_g2_i12 from sample A1 / Example spliced isoformAGTCAAGATGGCTGATTTGCGCACAATATTGTTCCTCATCAAAATCTGATTCATAGTTGAAAGCTTCGATAGGTGCTGACTGAGAAAGCTTCTCTTCTTCATCAGAATACTCATCATACTTAGATCCAGAAATATCAGATTTGAAGCATAGTGATGACAGAGAAGGTTTACTGTCGTTGGATACTCTTTGTGGGCAGTCA
ATTCAAAAGATTTCTACCAATGCATTCCACCGACCAAAATTTGTCCATCCTATGGCAATTGTGCACCCTGATGCTATTTTTGGCGAGGGGGTAATGAACAAATTCTCAACTTGCAGGGCGTCGTGATTGGGCCATTTTGTACTGTGGGTCCAGCAACAAAGCTTGGAAATCGTTGTCAGTTGCATCCTGGATGTCATATC
AGTGGAAACACAGAGTTAGGAGAAGGATGTGTGTTACTCACTGGTGCAGTTGTTGGTTCTGATCTACCAGGGCGTACTGTTATTGGAAACAACAATTTTATTGGGTACCATGCAGTTGTTGGAGTAAAATGTCAAGATCTGAAATACAGAGATGGTGATGACTGCTTCCTCTATATTGGAGACAACAATGACATCAGGGA
ACATGCTAGCATTCATCGATCATCCAAGCCAACGGATCAGACGGTCATTGGTGACAATAATCTTATTATGGGCTCCTGCCATATTGCTCATGATTGCAAACTGGGAAACCACAATATTTTTGCAAATGGTACACTATTGGGTGGCCATGTGGTGGTACAGAATCATGTTCATACTGGTGGAGCTGTTGCTGTTCACCAAT
TTTGCCACATAGGATCATTTGCATTTGTCGCTGGAGGCTCCGTGGTTACACATGATGTTCCTATGTACACGATGGTAGCTGGAGATCGAGCAGAACTTCGTGGATTGAATTTGGAGGGTCTTCGTCGTCGTGGATTTTCTGATTTGGAGGTCAAGAGCATTAGACGAGCCTATCAGAAGCTATTCATGTGCACTGATGTC
AATGCAGGAGGCTTAGAGGAACGTCTTGTTGAATTAGAGAAAAATGAAGAGCTAGCAAATGTGACAGCGGTAATTCTGATGGTAAAATCAGTTCGTGATTCTTTTAAGGAAAATCGCAGGGGTATTGTTAAGTTCAGGAATTGGACTCGCGACTGATGCATAGTTATAGTTTAGATACTATTTAATAGTTTAAGATATAA
TATCTGATTCCCAGAAGTGAAACCTATATTGTCCGATCCCATTATTGAAGGGGTAAAGTTACCTTAAAATTCATTTTTTGGCTGATTGCTAGTTATCATTATTTGTTTGGTCTCGAGTGATCAGCATATTATGCGGTTGTGATCCAAACAATAAAACTATCCTGAAAACATGTAAAACCTTGCATTATTTTTCAGGACAA
GCTTGATTCTTTGGACACTGCCTGTCTTTATAGTAATCCACTTCATTTGTCCCATAACATACATATGTATATTACATCTCTTTGCCAAATTGGCCTATATATTTTGGTTCCATGTAGACTGGAGACATTGGCTCATCAAATCTGGATGTTTAGTTAATGAACTGTTACAAATATTTCACTGCTGCATAATCATTTTCTGA
TGGATAGGTATTAGAGTAAAAGATATAAGAAAACCTTCTTGCATAACAAAAC
>TRINITY_DN117800_c1_g2_i7 from sample A1 / Example unspliced isoform:TGGTGCAGTTGTTGGTTCTGATCTACCAGGGCGTACTGTTATTGGAAACAACAATTTTATTGGGTACCATGCAGTTGTTGGAGTAAAATGTCAAGATCTGAAATACAGAGATGGTGATGACTGCTTCCTCTATATTGGAGACAACAATGACATCAGGGAACATGCTAGCATTCATCGATCATCCAAGCCAACGGATCAGA
CGgtaaaaaagggctgatgcattcttttcatgaaaattctgcaaatgcctttgaagatttgcttgcagttgcatatttgtaaatctgtttttgtgtttaaagctgtaaggcctcacactgcagactcatcttggtagGTCATTGGTGACAATAATCTTATTATGGGCTCCTGCCATATTGCTCATGATTGCAAACTGGGA
AACCACAATATTTTTGCAAATGGTACACTATTGGGTGGCCATGTGGTGGTACAGGTAAGCTGTTTGTCTCTTTATGCAAAGTTGAATCAGGCAACTTATCCATTCTTGTAGC
Intron 2 GCGTCGTGAT ... AAATACAGAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 50.54 | 23 | 21 | 26 |
| A2 | 57.69 | 22 | 29 | 31 |
| A3 | 67.03 | 15 | 31 | 30 |
| A4 | 63.33 | 11 | 21 | 17 |
| A5 | 48.84 | 11 | 14 | 7 |
| A6 | 74.14 | 15 | 27 | 59 |
| A7 | 74.19 | 32 | 71 | 113 |
| A8 | 77.65 | 19 | 36 | 96 |
| A9 | 67.59 | 35 | 75 | 71 |
| A10 | 72.31 | 36 | 82 | 106 |
>TRINITY_DN43515_c0_g1_i14 from sample A6 / Example spliced isoformCGGAGCGGTTTTATGTCAAACCCACGATGGACCGACATGTCGGTCCGCCTAATTTTCTGTGACAAAATGCACAATAGGGACGTTCACAAAATCCCTCGGAGCGAGAATTTGGAGTGCAATATCATTCCGCGCTTAGCCTTATACGAATCTTCTACGTTTCCGTCGATTGACGTGAATCTCAGTCTCAATGCGAAAACCGT
ATCATACATGTAAAGGCATACGAACTCTGCAGAGCAGAAGAGAACAGAGACAGAGGCAGGGAAATGCTTGGCTTAAATAGTCCTCTATTATCAGGCCTGTCTCTTAGACTCGCTAGCTCACGGGGATATGATCAGAAATCTTCTCTCTGCTGGTATTTTCTGCAGGCAGAAAAACGCCATGTTTTGCGGTGCAATTCCTT
TGTTAACAGGCGGATATGCCTGTTTGCTTCACAAATATGTGAACCAGAGTCCTGAAAATGGTGACGGAGACAATGCGTTATTGCGACAGAAGCATTTTCGCTTCTATTCCGCTGTTTCCCCCCCAAGTTCAGACTTCTTTAATGGCGGAAAACTACGCGATAGCTTGCATTTAGGAGGCAGCAGAATGATAGGTATTTGC
AGAATGCATAGCGAAATATCAGATTTGAAGCATAGTGATGACAGAGAAGGTTTACTGTCGTTGGATACTCTTTGTGGGCAGTCAATTCAAAAGATTTCTACCAATGCATTCCACCGACCAAAATTTGTCCATCCTATGGCAATTGTGCACCCTGATGCTATTTTTGGCGAGGATGGTGATGACTGCTTCCTCTATATTGG
AGACAACAACGACATCAGGGAACATGCTAGCATTCATCGATCATCCAAGCCAACGGATCAGACGGTCATTGGTGACAATAATCTTATTATGGGCTCCTGCCATATTGCTCATGATTGCAAACTGGGAAACCACAATATTTTTGCAAATGGTACACTATTGGGTGGCCATGTGGTGGTACAGAATCATGTTCATACTGGTG
GAGCTGTTGCTGTTCACCAATTTTGCCACATAGGATCATTTGCATTTGTCGCTGGAGGCTCCGTGGTTACACATGATGTTCCTATGTACACGATGGTAGCTGGAGATCGAGCAGAACTTCGTGGATTGAATTTGGAGGGTCTTCGTCGTCGTGGATTTTCTGATTTGGAGGTCAAGAGCATTAGACGAGCCTATCAGAAG
CTATTCATGTGCACTGATGTCAATGCAGGAGGCTTAGAGGAACGTCTTGTTGAATTAGAGAAAAATGAAGAGCTAGCAAATGTGACAGCGGTAATTCTGATGGTAAAATCAGTTCGTGATTCTTTTAAGGAAAATCGCAGGGGTATTGTTAAGTTCAGGAATTGGACTCGCGACTGATGCATAGTTATAGTTTAGATACT
ATTTAATAGTTTAAGATATAATATCTGATTCCCAGAAGTGAAACCTATATTGTCCGATCCCATTATTGAAGGGGTAAAGTTACCTTAAAATTCATTTTTTGGCTGATTGCTAGTTATCATTATTTGTTTGGTCTCGAGTGATCAGCATATTATGCGGTTGTGATCCAAACAATAAAACTATCCTGAAAACATGTAAAACC
TTGCATTATTTTTCAGGACAAGCTTGATTCTTTGGACACTGCCTGTCTTTATAGTAATCCACTTCATTTGTCCCATAACATACATATGTATATTACATCTCTTTGCCAAATTGGCCTATATATTTTGGTTCCATGTAGACTGGAGACATTGGCTCATCAAATCTGGATGTTTAGTTAATGAACTGTTACAAATATTTCAC
TGCTGCATAATCATTTTCTGATGGATAGGTATTAGAGTAAAAGATATAAGAAAACCTTCTTGCATAACAAAACAC
>TRINITY_DN43515_c0_g1_i15 from sample A6 / Example unspliced isoform:CGGAGCGGTTTTATGTCAAACCCACGATGGACCGACATGTCGGTCCGCCTAATTTTCTGTGACAAAATGCACAATAGGGACGTTCACAAAATCCCTCGGAGCGAGAATTTGGAGTGCAATATCATTCCGCGCTTAGCCTTATACGAATCTTCTACGTTTCCGTCGATTGACGTGAATCTCAGTCTCAATGCGAAAACCGT
ATCATACATGTAAAGGCATACGAACTCTGCAGAGCAGAAGAGAACAGAGACAGAGGCAGGGAAATGCTTGGCTTAAATAGTCCTCTATTATCAGGCCTGTCTCTTAGACTCGCTAGCTCACGGGGATATGATCAGAAATCTTCTCTCTGCTGGTATTTTCTGCAGGCAGAAAAACGCCATGTTTTGCGGTGCAATTCCTT
TGTTAACAGGCGGATATGCCTGTTTGCTTCACAAATATGTGAACCAGAGTCCTGAAAATGGTGACGGAGACAATGCGTTATTGCGACAGAAGCATTTTCGCTTCTATTCCACTGTTTTCCCCCCAAGTTCAGACTTCTTTAATGGCGGAAAACTACGCGATAGCTTGCATTTAGGAGGCAGCAGAATGATAGGTATTTGC
AGAATGCATAGCGATCCAGAAATATCAGATTTGAAGCATAGTGATGACAGAGAAGGTTTACTGTCGTTGGATACTCTTTGTGGGCAGTCAATTCAAAAGATTTCTACCAATGCATTCCACCGACCAAAATTTGTCCATCCTATGGCAATTGTGCACCCTGATGCTATTTTTGGCGAGGgcgtcgtgattgggccattttg
tactgtgggtccagcaacaaagcttggaaatcgttgtcagttgcatcctggatgtcatatcagtggaaacacagagttaggagaaggattggtgcagttgttggttctgatctaccagggcgtactgttattggaaacaacaattttattgggtaccatgcagttgttggagtaaaatgtcaagatctgaaatacagagA
TGGTGATGACTGCTTCCTCTATATTGGAGACAACAACGACATCAGGGAACATGCTAGCATTCATCGATCATCCAAGCCAACGGATCAGACGGTCATTGGTGACAATAATCTTATTATGGGCTCCTGCCATATTGCTCATGATTGCAAACTGGGAAACCACAATATTTTTGCAAATGGTACACTATTGGGTGGCCATGTGG
TGGTACAGAATCATGTTCATACTGGTGGAGCTGTTGCTGTTCACCAATTTTGCCACATAGGATCATTTGCATTTGTCGCTGGAGGCTCCGTGGTTACACATGATGTTCCTATGTACACGATGGTAGCTGGAGATCGAGCAGAACTTCGTGGATTGAATTTGGAGGGTCTTCGTCGTCGTGGATTTTCTGATTTGGAGGTC
AAGAGCATTAGACGAGCCTATCAGAAGCTATTCATGTGCACTGATGTCAATGCAGGAGGCTTAGAGGAACGTCTTGTTGAATTAGAGAAAAATGAAGAGCTAGCAAATGTGACAGCGGTAATTCTGATGGTAAAATCAGTTCGTGATTCTTTTAAGGAAAATCGCAGGGGTATTGTTAAGTTCAGGAATTGGACTCGCGA
CTGATGCATAGTTATAGTTTAGATACTATTTAATAGTTTAAGATATAATATCTGATTCCCAGAAGTGAAACCTATATTGTCCGATCCCATTATTGAAGGGGTAAAGTTACCTTAAAATTCATTTTTTGGCTGATTGCTAGTTATCATTATTTGTTTGGTCTCGAGTGATCAGCATATTATGCGGTTGTGATCCAAACAAT
AAAACTATCCTGAAAACATGTAAAACCTTGCATTATTTTTCAGGACAAGCTTGATTCTTTGGACACTGCCTGTCTTTATAGTAATCCACTTCATTTGTCCCATAACATACATATGTATATTACATCTCTTTGCCAAATTGGCCTATATATTTTGGTTCCATGTAGACTGGAGACATTGGCTCATCAAATCTGGATGTTTA
GTTAATGAACTGTTACAAATATTTCACTGCTGCATAATCATTTTCTGATGGATAGGTATTAGAGTAAAAGATATAAGAAAACCTTCTTGCATAACAAAACAC
Intron 3 GCGTCGTGAT ... AAATACAGAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 52.58 | 23 | 24 | 27 |
| A2 | 58.1 | 22 | 31 | 30 |
| A3 | 65.91 | 15 | 29 | 29 |
| A4 | 62.07 | 11 | 19 | 17 |
| A5 | 46.34 | 11 | 12 | 7 |
| A6 | 72.8 | 17 | 33 | 58 |
| A7 | 73.55 | 32 | 74 | 104 |
| A8 | 77.27 | 20 | 40 | 96 |
| A9 | 68 | 36 | 86 | 67 |
| A10 | 71.76 | 37 | 82 | 106 |
>TRINITY_DN40897_c0_g1_i3 from sample A9 / Example spliced isoformGAAATATCAGATTTGAAGCATAGTGATGACAGAGAAGGTTTACTGTCGTTGGATACTCTTTGTGGGCAGTCAATTCAAAAGATTTCTACCAATGCATTCCACCGACCAAAATTTGTCCATCCTATGGCAATTGTGCACCCTGATGCTATTTTTGGCGAGGATGGTGATGACTGCTTCCTCTATATTGGAGACAACAATGA
CATCAGGGAACATGCTAGCATTCATCGATCATCCAAGCCAACGGATCAGACGGTCATTGGTGACAATAATCTTATTATGGGCTCCTGCCATATTGCTCATGATTGCAAACTGGGAAACCACAATATTTTTGCAAATGGTACACTATTGGGTGGCCATGTGGTGGTACAGAATCATGTTCATACTGGTGGAGCTGTTGCTG
TTCACCAATTTTGCCACATAGGATCATTTGCATTTGTCGCTGGAGGCTCCGTGGTTACACATGATGTTCCTATGTACACGATGGTAGCTGGAGATCGAGCAGAACTTCGTGGATTGAATTTGGAGGGTCTTCGTCGTCGTGGATTTTCTGATTTGGAGAAGGGTGCTGGCTAAATACAACTCAGTTGTACAGAAAAATAG
GAGCTTCACCCCAAACTTTGGCTGTGCAGTTCAAAATACTACTCTTAACCTCCATGTATATGCAATATCCATGGCTATATGCTAGCTTCTGTTTTAAGTCCTCTCTTATATGTGTAAAGGAGGAGTACGAGAGAGTAATTATATTGTGTGTTCATAGTGAGTATGAGATCTCCTCTCACACTTCTACACAGATCTGCACA
TGGTAATC
>TRINITY_DN40897_c0_g1_i7 from sample A9 / Example unspliced isoform:GAAATATCAGATTTGAAGCATAGTGATGACAGAGAAGGTTTACTGTCGTTGGATACTCTTTGTGGGCAGTCAATTCAAAAGATTTCTACCAATGCATTCCACCGACCAAAATTTGTCCATCCTATGGCAATTGTGCACCCTGATGCTATTTTTGGCGAGGgcgtcgtgattgggccattttgtactgtgggtccagcaac
aaagcttggaaatcgttgtcagttgcatcctggatgtcatatcagtggaaacacagagttaggagaaggatgtgtgttactcacgtgggttacccataggattagtgcactcctattgcataaagtttttttaggagaaagatatgtagcattctaagttagctattctacaatactcaaatttttgaactttggaagcc
tttgccaatgcttgttcattattgtagattgtttccaaaaccatggatatcagtaaggtttcttgtctatatgattgatttgttttgttgcaattttgccaaacagtggtgcagttgttggttctgatctaccagggcgtactgttattggaaacaacaattttattgggtaccatgcagttgttggagtaaaatgtcaa
gatctgaaatacagagATGGTGATGACTGCTTCCTCTATATTGGAGACAACAATGACATCAGGGAACATGCTAGCATTCATCGATCATCCAAGCCAACGGATCAGACGGTCATTGGTGACAATAATCTTATTATGGGCTCCTGCCATATTGCTCATGATTGCAAACTGGGAAACCACAATATTTTTGCAAATGGTACACT
ATTGGGTGGCCATGTGGTGGTACAGAATCATGTTCATACTGGTGGAGCTGTTGCTGTTCACCAATTTTGCCACATAGGATCATTTGCATTTGTCGCTGGAGGCTCCGTGGTTACACATGATGTTCCTATGTACACGATGGTAGCTGGAGATCGAGCAGAACTTCGTGGATTGAATTTGGAGGGTCTTCGTCGTCGTGGAT
TTTCTGATTTGGAGAAGGGTGCTGGCTAAATACAACTCAGTTGTACAGAAAAATAGGAGCTTCACCCCAAACTTTGGCTGTGCAGTTCAAAATACTACTCTTAACCTCCATGTATATGCAATATCCATGGCTATATGCTAGCTTCTGTTTTAAGTCCTCTCTTATATGTGTAAAGGAGGAGTACGAGAGAGTAATTATAT
TGTGTGTTCATAGTGAGTATGAGATCTCCTCTCACACTTCTACACAGATCTGCACATGGTAATC
Intron 4 GTTGAAGCAT ... TCATACTTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 21.43 | 33 | 8 | 10 |
| A2 | 21.43 | 22 | 6 | 6 |
| A3 | 29.9 | 34 | 10 | 19 |
| A4 | 26.13 | 41 | 13 | 16 |
| A5 | 35.71 | 9 | 2 | 8 |
| A6 | 23.81 | 40 | 10 | 15 |
| A7 | 29.85 | 47 | 15 | 25 |
| A8 | 28.42 | 34 | 11 | 16 |
| A9 | 26.67 | 55 | 11 | 29 |
| A10 | 22.96 | 52 | 14 | 17 |
>TRINITY_DN45749_c0_g1_i9 from sample A7 / Example spliced isoformCCCGGGGAGCGGTTTTATGTCAAACCCACGATGGACCGACATGTCGGTCCGCCTAATTTTCTGTGACAAAATGCACAATAGGGACGTTCACAAAATCCCTCGGAGCGAGAATTTGGAGTGCAATATCATTCCGCGCTTAGCCTTATACGAATCTTCTACGTTTCCGTCGATTGACGTGAATCTCAGTCTCAATGCGAAAA
CCGTATCATACATGTAAAGGCATACGAACTCTGCAGAGCAGAAGAGAACAGAGACAGAGGCAGGGAAATGCTTGGCTTAAATAGTCCTCTATTATCAGGCCTGTCTCTTAGACTCGCTAGCTCACGGGGATATGATCAGAAATCTTCTCTCGGCTGGTATTTTCTGCAGGCAGAAAAACGCCATGTTTTGCGGTGCAATT
CCTTTGTTAACAGGCGGATATGCCTGTTTGCTTCACAAATATGTGAACCAGAGTCCTGAAAATGGTGACGGAGACAATGCGTTATTGCGACAGAAGCATTTTCGCTTCTATTCCACTGTTTTCCCCCCAAGTTCAGACTTCTTTAATGGCGGAAAACTACGCGATAGCTTGCATTTAGGAGGCAGCAGAATGATAGGTAT
TTGCAGAATGCATAGCGATCCAGAAATATCAGATTTGAAGCATAGTGATGACAGAGAAGGTTTACTGTCGTTGGATACTCTTTGTGGGCAGTCAATTCAAAAGATTTCTACCAATGCATTCCACCGACCAAAATTTGTCCATCCTATGGCAATTGTGCACCCTGATGCTATTTTTGGCGAGGGCGTCGTGATTGGGCCAT
TTTGTACTGTGGGTCCAGCAACAAAGCTTGGAAATCGTTGTCAGTTGCATCCTGGATGTCATATCAGTGGAAACACAGAGTTAGGAGAAGGATGTGTGTTACTCACGTGGGTTACCCATAGGATTAGTGCACTCCTATTGCATAAAGTTTTTTTAGGAGAAAGATATGTAGCATTCTAAGTTAGCTATTCTACAATACTC
AAATTTTTGAACTTTGGAAGCCTTTGCCAATGCTTGTTCATTATTGTAGATTGTTTCCAAAACCATGGATATCAGTAAGGTTTCTTGTCTATATGATTGATTTGTTTTGTTGCAATTTTGCCAAACAGTGGTGCAGTTGTTGGTTCTGATCTACCAGGGCGTACTGTTATTGGAAACAACAATTTTATTGGGTACCATGC
AGTTGTTGGAGTAAAATGTCAAGATCTGAAATACAGAGATGGTGATGACTGCTTCCTCTATATTGGAGACAACAATGACATCAGGGAACATGCTAGCATTCATCGATCATCCAAGCCAACGGATCAGACGGTCATTGGTGACAATAATCTTATTATGGGCTCCTGCCATATTGCTCATGATTGCAAACTGGGAAACCACA
ATATTTTTGCAAATGGTACACTATTGGGTGGCCATGTGGTGGTACAGAATCATGTTCATACTGGTGGAGCTGTTGCTGTTCACCAATTTTGCCACATAGGATCATTTGCATTTGTCGCTGGAGGCTCCGTGGTTACACATGATGTTCCTATGTACACGATGGTAGCTGGAGATCGAGCAGAACTTCGTGGATTGAATTTG
GAGGGTCTTCGTCGTCGTGGATTTTCTGATTTGGAGGTCAAGAGCATTAGACGAGCCTATCAGAAGCTATTCATGTGCACTGATGTCAATGCAGGAGGCTTAGAGGAACGTCTTGTTGAATTAGAGAAAAATGAAGAGCTAGCAAATGTGACAGCGGTAATTCTGATGGTAAAATCAGTTCGTGATTCTTTTAAGGAAAA
TCGCAGGGGTATTGTTAAGTTCAGGAATTGGACTCGCGACTGATGCATAGTTATAGTTTAGATACTATTTAATAGTTTAAGATATAATATCTGATTCCCAGAAGTGAAACCTATATTGTCCGATCCCATTATTGAAGGGGTAAAGTTACCTTAAAATTCATTTTTTGGCTGATTGCTAGTTATCATTATTTGTTTGGTCT
CGAGTGATCAGCATATTATGCGGTTGTGATCCAAACAATAAAACTATCCTGAAAACATGTAAAACCTTGCATTATTTTTCAGGACAAGCTTGATTCTTTGGACACTGCCTGTCTTTATAGTAATCCACTTCATTTGTCCCATAACATACATATGTATATTACATCTCTTTGCCAAATTGGCCTATATATTTTGGTTCCAT
GTAGACTGGAGACATTGGCTCATCAAATCTGGATGTTTAGTTAATGAACTGTTACAAATATTTCACTGCTGCATAATCATTTTCTGATGGATAGGTATTAGAGTAAAAGATATAAGAAAACCTTCTTGCATAACAAAACACTACTGTAAGCTGTAACTTTTAGAAGGCAAATTCTTTGTATATATTTAATTCTTTCAAAA
CCTCAA
>TRINITY_DN45749_c0_g1_i16 from sample A7 / Example unspliced isoform:CCCGGGGAGCGGTTTTATGTCAAACCCACGATGGACCGACATGTCGGTCCGCCTAATTTTCTGTGACAAAATGCACAATAGGGACGTTCACAAAATCCCTCGGAGCGAGAATTTGGAGTGCAATATCATTCCGCGCTTAGCCTTATACGAATCTTCTACGTTTCCGTCGATTGACGTGAATCTCAGTCTCAATGCGAAAA
CCGTATCATACATGTAAAGGCATACGAACTCTGCAGAGCAGAAGAGAACAGAGACAGAGGCAGGGAAATGCTTGGCTTAAATAGTCCTCTATTATCAGGCCTGTCTCTTAGACTCGCTAGCTCACGGGGATATGATCAGAAATCTTCTCTCGGCTGGTATTTTCTGCAGGCAGAAAAACGCCATGTTTTGCGGTGCAATT
CCTTTGTTAACAGGCGGATATGCCTGTTTGCTTCACAAATATGTGAACCAGAGTCCTGAAAATGGTGACGGAGACAATGCGTTATTGCGACAGAAGCATTTTCGCTTCTATTCCACTGTTTTCCCCCCAAGTTCAGACTTCTTTAATGGCGGAAAACTACGCGATAGCTTGCATTTAGGAGGCAGCAGAATGATAGGTAT
TTGCAGAATGCATAGCGgttgaagcatgttgaatgcaagcctgctgatttgcagagatggatgctcaatgtcttctacggattcaagatggctgatttgcacacaatattgttcctcatcaaaatctgattcatagttgaaagcttcgataggtgctgactgagaaagcttatcttcttcatcagaatactcatcatact
tagATCCAGAAATATCAGATTTGAAGCATAGTGATGACAGAGAAGGTTTACTGTCGTTGGATACTCTTTGTGGGCAGTCAATTCAAAAGATTTCTACCAATGCATTCCACCGACCAAAATTTGTCCATCCTATGGCAATTGTGCACCCTGATGCTATTTTTGGCGAGGGCGTCGTGATTGGGCCATTTTGTACTGTGGGT
CCAGCAACAAAGCTTGGAAATCGTTGTCAGTTGCATCCTGGATGTCATATCAGTGGAAACACAGAGTTAGGAGAAGGATGTGTGTTACTCACGTGGGTTACCCATAGGATTAGTGCACTCCTATTGCATAAAGTTTTTTTAGGAGAAAGATATGTAGCATTCTAAGTTAGCTATTCTACAATACTCAAATTTTTGAACTT
TGGAAGCCTTTGCCAATGCTTGTTCATTATTGTAGATTGTTTCCAAAACCATGGATATCAGTAAGGTTTCTTGTCTATATGATTGATTTGTTTTGTTGCAATTTTGCCAAACAGTGGTGCAGTTGTTGGTTCTGATCTACCAGGGCGTACTGTTATTGGAAACAACAATTTTATTGGGTACCATGCAGTTGTTGGAGTAA
AATGTCAAGATCTGAAATACAGAGATGGTGATGACTGCTTCCTCTATATTGGAGACAACAATGACATCAGGGAACATGCTAGCATTCATCGATCATCCAAGCCAACGGATCAGACGGTAAAAAAGGGCTGATGCATTCTTTTCATGAAAATTCTGCAAATGCCTTTGAAGATTTGCTTGCA
Intron 5 GTAAGCTGTT ... TGGGTCACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 28 | 18 | 3 | 7 |
| A2 | 23.08 | 20 | 4 | 6 |
| A3 | 41.18 | 20 | 6 | 14 |
| A4 | 40 | 12 | 2 | 8 |
| A5 | 66.67 | 1 | 1 | 2 |
| A6 | 26.56 | 47 | 5 | 17 |
| A7 | 27.47 | 66 | 3 | 25 |
| A8 | 27 | 73 | 8 | 27 |
| A9 | 27.17 | 67 | 3 | 25 |
| A10 | 29.27 | 87 | 7 | 36 |
>TRINITY_DN114921_c0_g1_i4 from sample A3 / Example spliced isoformGAAATATCAGATTTGAAGCATAGTGATGACAGAGAAGGTTTACTGTCGTTGGATACTCTTTGTGGGCAGTCAATTCAAAAGATTTCTACCAATGCATTCCACCGACCAAAATTTGTCCATCCTATGGCAATTGTGCACCCTGATGCTATTTTTGGCGAGGGCGTCGTGATTGGGCCATTTTGTACTGTGGGTCCAGCAAC
AAAGCTTGGAAATCGTTGTCAGTTGCATCCTGGATGTCATATCAGTGGAAACACAGAGTTAGGAGAAGGATGTGTGTTACTCACTGGTGCAGTTGTTGGTTCTGATCTACCAGGGCGTACTGTTATTGGAAACAACAATTTTATTGGGTACCATGCAGTTGTTGGAGTAAAATGTCAAGATCTGAAATACAGAGATGGTG
ATGACTGCTTCCTCTATATTGGAGACAACAATGACATCAGGGAACATGCTAGCATTCATCGATCATCCAAGCCAACGGATCAGACGGTCATTGGTGACAATAATCTTATTATGGGCTCCTGCCATATTGCTCATGATTGCAAACTGGGAAACCACAATATTTTTGCAAATGGTACACTATTGGGTGGCCATGTGGTGGTA
CAGAATCATGTTCATACTGGTGGAGCTGTTGCTGTTCACCAATTTTGCCACATAGGATCATTTGCATTTGTCGCTGGAGGCTCCGTGGTTACACATGATGTTCCTATGTACACGATGGTAGCTGGAGATCGAGCAGAACTTCGTGGATTGAATTTGGAGGGTCTTCGTCGTCGTGGATTTTCTGATTTGGAGGTCAAGAG
CATTAGACGAGCCTATCAGAAGCTATTCATGTGCACTGATGTCAATGCAGGAGGCTTAGAGGAACGTCTTGTTGAATTAGAGAAAAATGAAGAGCTAGCAAATGTGACAGCGGTAATTCTGATGGTAAAATCAGTTCGTGATTCTTTTAAGGAAAATCGCAGGGGTATTGTTAAGTTCAGGAATTGGACTCGCGACTGAT
GCATAGTTATAGTTTAGATACTATTTAATAGTTTAAGATATAATATCTGATTCCCAGAAGTGAAACCTATATTGTCCGATCCCATTATTGAAGGGGTAAAGTTACCTTAAAATTCATTTTTTGGCTGATTGCTAGTTATCATTATTTGTTTGGTCTCGAGTGATCAGCATATTATGCGGTTGTGATCCAAACAATAAAAC
TATCCTGAAAACATGTAAAACCTTGCATTATTTTTCAGGACAAGCTTGATTCTTTGGACACTGCCTGTCTTTATAGTAATCCACTTCATTTGTCCCATAACATACATATGTATATTACATCTCTTTGCCAAATTGGCCTATATATTTTGG
>TRINITY_DN114921_c0_g1_i12 from sample A3 / Example unspliced isoform:AGTTGAGGAGACAACGAGCTCCACTGATTCTAATGCAGATAAGAATCCTTTGCGTTGGGCCTTTTGCAAGTGATCCAGCCAGCTCCCTGTCACACGAGTGTTTGTTCTTTTCTTCTTAACTTTCACACTTGACCTGTCTCTACTTCATTGTCTAGGGTTTACCTTTTAGGCATTTTATATTGTTAATTTGTGTTGGTCTT
CCTACTCATTTAGATTCCAGATTTTTTGCAGATGCCATAGGCACTCCGACATGGGCTTTGTAACTTGCTGTACTTTGGTCATTTGTAGACATTAATTTATTTTCTTTCTTCTTTGAGCCTTGATTCTGATATTTAATAAAAGTAAACTTCAGAGTTCAGTGTAGTTGTGTTTTCATGTCCAAGACAGTTGGGATAATGGA
TGTAGTCTGATATTTATCCTTGTTGGTTTACTTGGTGATTTCTTCTCTGAGTTGTTTTCACTTAAAAATTAAAATGTATAATTTTGTTTGTTAGCAATCACTTTCTTATTTCATAGATAGCATTGGGTGACTTTTGAAAGTGGTTGATTGGCACTGAAGTTTCTAATTGCACAGGATGGTGATGACTGCTTCCTCTATAT
TGGAGACAACAATGACATCAGGGAACATGCTAGCATTCATCGATCATCCAAGCCAACGGATCAGACGGTAAAAAAGGGCTGATGCATTCTTTTCATGAAAATTCTGCAAATGCCTTTGAAGATTTGCTTGCAGTTGCATATTTGTAAATCTGTTTTTGTGTTTAAAGCTGTAAGGCCTCACACTGCAGACTCATCTTGGT
AGGTCATTGGTGACAATAATCTTATTATGGGCTCCTGCCATATTGCTCATGATTGCAAACTGGGAAACCACAATATTTTTGCAAATGGTACACTATTGGGTGGCCATGTGGTGGTACAGgtaagctgtttgtctctttatgcaaagttgaatcaggcaacttatgatttatccattcttgtagtccttatatttcaagtt
gcttatgtcatatacggtaagactccaaagtcactggctttgatctttgaaacatctttgggtcacagAATCATGTTCATACTGGTGGAGCTGTTGCTGTTCACCAATTTTGCCACATAGGATCATTTGCATTTGTCGCTGGAGGCTCCGTGGTTACACATGATGTTCCTATGTACACGATGGTAGCTGGAGATCGAGCA
GAACTTCGTGGATTGAATTTGGAGGGTCTTCGTCGTCGTGGATTTTCTGATTTGGAGGTCAAGAGCATTAGACGAGCCTATCAGAAGCTATTCATGTGCACTGATGTCAATGCAGGAGGCTTAGAGGAACGTCTTGTTGAATTAGAGAAAAATGAAGAGCTAGCAAATGTGACAGCGGTAATTCTGATGGTAAAATCAGT
TCGTGATTCTTTTAAGGAAAATCGCAGGGGTATTGTTAAGTTCAGGAATTGGACTCGCGACTGATGCATAGTTATAGTTTAGATACTATTTAATAGTTTAAGATATAATATCTGATTCCCAGAAGTGAAACCTATATTGTCCGATCCCATTATTGAAGGGGTAAAGTTACCTTAAAATTCATTTTTTGGCTGATTGCTAG
TTATCATTATTTGTTTGGTCTCGAGTGATCAGCATATTATGCGGTTGTGATCCAAACAATAAAACTATCCTGAAAACATGTAAAACCTTGCATTATTTTTCAGGACAAGCTTGATTCTTTGGACACTGCCTGTCTTTATAGTAATCCACTTCATTTGTCCCATAACATACATATGTATATTACATCTCTTTGCCAAATTG
GCCTATATATTTTGG
Intron 6 GTAAAAAAGG ... CACACTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 35.29 | 11 | 8 | 4 |
| A2 | 24.64 | 26 | 11 | 6 |
| A3 | 25.71 | 13 | 4 | 5 |
| A4 | 35 | 13 | 10 | 4 |
| A5 | 27.27 | 4 | 1 | 2 |
| A6 | 21.21 | 26 | 12 | 2 |
| A7 | 17.07 | 51 | 17 | 4 |
| A8 | 22.49 | 60.3 | 29 | 6 |
| A9 | 23.73 | 45 | 16 | 12 |
| A10 | 17.04 | 56 | 19 | 4 |
>TRINITY_DN41941_c1_g1_i13 from sample A8 / Example spliced isoformAGCGGTTTTATGTCAAACCCACGATGGACCGACATGTCGGTCCGCCTAATTTTCTGTGACAAAATGCACAATAGGGACGTTCACAAAATCCCTCGGAGCGAGAATTTGGAGTGCAATATCATTCCGCGCTTAGCCTTATACGAATCTTCTACGTTTCCGTCGATTGACGTGAATCTCAGTCTCAATGCGAAAACCGTATC
ATACATGTAAAGGCATACGAACTCTGCAGAGCAGAAGAGAACAGAGACAGAGGCAGGGAAATGCTTGGCTTAAATAGTCCTCTATTATCAGGCCTGTCTCTTAGACTCGCTAGCTCACGGGGATATGATCAGAAATCTTCTCTCGGCTGGTATTTTCTGCAGGCAGAAAAACGCCATGTTTTGCGGTGCAATTCCTTTGT
TAACAGGCGGATATGCCTGTTTGCTTCACAAATATGTGAACCAGAGTCCTGAAAATGGTGACGGAGACAATGCGTTATTGCGACAGAAGCATTTTCGCTTCTATTCCGCTGTTTCCCCCCCAAGTTCAGACTTCTTTAATGGCGGAAAACTACGCGATAGCTTGCATTTAGGAGGCAGCAGAATGACAGGTATTTGCAGA
ATGCATAGCGATCCAGAAATATCAGATTTGAAGCATAGTGATGACAGAGAAGGTTTACTGTCGTTGGATACTCTTTGTGGGCAGTCAATTCAAAAGATTTCTACCAATGCATTCCACCGACCAAAATTTGTCCATCCTATGGCAATTGTGCACCCTGATGCTATTTTTGGCGAGGGCGTCGTGATTGGGCCATTTTGTAC
TGTGGGTCCAGCAACAAAGCTTGGAAATCGTTGTCAGTTGCATCCTGGATGTCATATCAGTGGAAACACAGAGTTAGGAGAAGGATGTGTGTTACTCACGTGGGTTACCCATAGGATTAGTGCACTCCTATTGCATAAAGTTTTTTTAGGAGAAAGATATGTAGCATTCTAAGTTAGCTATTCTACAATACACAAATTTT
TGAACTTTGGAAGCCTTTGCCAATGCTTGTTCATTATTGTAGATTGTTTCCAAAACCATGGATATCAGTAAGGTTTCTTGTCTATATGATTGATTTGTTTTGTTGCAATTTTGCCAAACAGTGGTGCAGTTGTTGGTTCTGATCTACCAGGGCGTACTGTTATTGGAAACAACAATTTTATTGGGTACCATGCAGTTGTT
GGAGTAAAATGTCAAGATCTGAAATACAGAGATGGTGATGACTGCTTCCTCTATATTGGAGACAACAATGACATCAGGGAACATGCTAGCATTCATCGATCATCCAAGCCAACGGATCAGACGACTCATCTTGGTAGGTCATTGGTGACAATAATCTTATTATGGGCTCCTGCCATATTGCTCATGATTGCAAACTGGGA
AACCACAATATTTTTGCAAATGGTACACTATTGGGTGGCCATGTGGTGGTACAGAATCATGTTCATACTGGTGGAGCTGTTGCTGTTCACCAATTTTGCCACATAGGATCATTTGCATTTGTCGCTGGAGGCTCCGTGGTTACACATGATGTTCCTATGTACACGATGGTAGCTGGAGATCGAGCAGAACTTCGTGGATT
GAATTTGGAGGGTCTTCGTCGTCGTGGATTTTCTGATTTGGAGGTCAAGAGCATTAGACGAGCCTATCAGAAGCTATTCATGTGCACTGATGTCAATGCAGGAGGCTTAGAGGAACGTCTTGTTGAATTAGAGAAAAATGAAGAGCTAGCAAATGTGACAGCGGTAATTCTGATGGTAAAATCAGTTCGTGATTCTTTTA
AGGAAAATCGCAGGGGTATTGTTAAGTTCAGGAATTGGACTCGCGACTGATGCATAGTTATAGTTTAGATACTATTTAATAGTTTAAGATATAATATCTGATTCCCAGAAGTGAAACCTATATTGTCCGATCCCATTATTGAAGGGGTAAAGTTACCTTAAAATTCATTTTTTGGCTGATTGCTAGTTATCATTATTTGT
TTGGTCTCGAGTGATCAGCATATTATGCGGTTGTGATCCAAACAATAAAACTATCCTGAAAACATGTAAAACCTTGCATTATTTTTCAGGACAAGCTTGATTCTTTGGACACTGCCTGTCTTTATAGTAATCCACTTCATTTGTCCCATAACATACATATGTATATTACATCTCTTTGCCAAATTGGCCTATATATTTTG
GTTCCATGTAGACTGGAGACATTGGCTCATCAAATCTGGATGTTTAGTTAATGAACTGTTACAAATATTTCACTGCTGC
>TRINITY_DN41941_c1_g1_i10 from sample A8 / Example unspliced isoform:AGCGGTTTTATGTCAAACCCACGATGGACCGACATGTCGGTCCGCCTAATTTTCTGTGACAAAATGCACAATAGGGACGTTCACAAAATCCCTCGGAGCGAGAATTTGGAGTGCAATATCATTCCGCGCTTAGCCTTATACGAATCTTCTACGTTTCCGTCGATTGACGTGAATCTCAGTCTCAATGCGAAAACCGTATC
ATACATGTAAAGGCATACGAACTCTGCAGAGCAGAAGAGAACAGAGACAGAGGCAGGGAAATGCTTGGCTTAAATAGTCCTCTATTATCAGGCCTGTCTCTTAGACTCGCTAGCTCACGGGGATATGATCAGAAATCTTCTCTCGGCTGGTATTTTCTGCAGGCAGAAAAACGCCATGTTTTGCGGTGCAATTCCTTTGT
TAACAGGCGGATATGCCTGTTTGCTTCACAAATATGTGAACCAGAGTCCTGAAAATGGTGACGGAGACAATGCGTTATTGCGACAGAAGCATTTTCGCTTCTATTCCGCTGTTTCCCCCCCAAGTTCAGACTTCTTTAATGGCGGAAAACTACGCGATAGCTTGCATTTAGGAGGCAGCAGAATGACAGGTATTTGCAGA
ATGCATAGCGATCCAGAAATATCAGATTTGAAGCATAGTGATGACAGAGAAGGTTTACTGTCGTTGGATACTCTTTGTGGGCAGTCAATTCAAAAGATTTCTACCAATGCATTCCACCGACCAAAATTTGTCCATCCTATGGCAATTGTGCACCCTGATGCTATTTTTGGCGAGGGGGTAATGAACAAATTCTCAACTTG
CAGGGCGTCGTGATTGGGCCATTTTGTACTGTGGGTCCAGCAACAAAGCTTGGAAATCGTTGTCAGTTGCATCCTGGATGTCATATCAGTGGAAACACAGAGTTAGGAGAAGGATTGGTGCAGTTGTTGGTTCTGATCTACCAGGGCGTACTGTTATTGGAAACAACAATTTTATTGGGTACCATGCAGTTGTTGGAGTA
AAATGTCAAGATCTGAAATACAGAGATGGTGATGACTGCTTCCTCTATATTGGAGACAACAATGACATCAGGGAACATGCTAGCATTCATCGATCATCCAAGCCAACGGATCAGACGgtaaaaaagggctgatgcattcttttcatgaaaattctgcaaatgcctttgaagatttgcttgcagttgcatatttgtaaatc
tgtttttgtgtttaaagctgtaaggcctcacactgcagACTCATCTTGGTAGGTCATTGGTGACAATAATCTTATTATGGGCTCCTGCCATATTGCTCATGATTGCAAACTGGGAAACCACAATATTTTTGCAAATGGTACACTATTGGGTGGCCATGTGGTGGTACAGAATCATGTTCATACTGGTGGAGCTGTTGCTG
TTCACCAATTTTGCCACATAGGATCATTTGCATTTGTCGCTGGAGGCTCCGTGGTTACACATGATGTTCCTATGTACACGATGGTAGCTGGAGATCGAGCAGAACTTCGTGGATTGAATTTGGAGGGTCTTCGTCGTCGTGGATTTTCTGATTTGGAGGTCAAGAGCATTAGACGAGCCTATCAGAAGCTATTCATGTGC
ACTGATGTCAATGCAGGAGGCTTAGAGGAACGTCTTGTTGAATTAGAGAAAAATGAAGAGCTAGCAAATGTGACAGCGGTAATTCTGATGGTAAAATCAGTTCGTGATTCTTTTAAGGAAAATCGCAGGGGTATTGTTAAGTTCAGGAATTGGACTCGCGACTGATGCATAGTTATAGTTTAGATACTATTTAATAGTTT
AAGATATAATATCTGATTCCCAGAAGTGAAACCTATATTGTCCGATCCCATTATTGAAGGGGTAAAGTTACCTTAAAATTCATTTTTTGGCTGATTGCTAGTTATCATTATTTGTTTGGTCTCGAGTGATCAGCATATTATGCGGTTGTGATCCAAACAATAAAACTATCCTGAAAACATGTAAAACCTTGCATTATTTT
TCAGGACAAGCTTGATTCTTTGGACACTGCCTGTCTTTATAGTAATCCACTTCATTTGTCCCATAACATACATATGTATATTACATCTCTTTGCCAAATTGGCCTATATATTTTGGTTCCATGTAGACTGGAGACATTGGCTCATCAAATCTGGATGTTTAGTTAATGAACTGTTACAAATATTTCACTGCTGC
Intron 7 GTAAGGTTCT ... CTTTATGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 20.49 | 34.9 | 0.5 | 9 |
| A2 | 15.28 | 66.8 | 6.9 | 12 |
| A3 | 35.22 | 25.8 | 2.2 | 14 |
| A4 | 44 | 14 | 0.7 | 11 |
| A5 | 54.97 | 4.9 | 1.2 | 6 |
| A6 | 12.67 | 158.7 | 10.1 | 23 |
| A7 | 11.45 | 193.7 | 11 | 25 |
| A8 | 10.57 | 237.3 | 17.2 | 28 |
| A9 | 11.85 | 193.7 | 12.5 | 26 |
| A10 | 18.2 | 148.5 | 7.6 | 33 |
>TRINITY_DN113503_c0_g1_i14 from sample A2 / Example spliced isoformGCGGTTTTATGTCAAACCCACGATGGACCGACATGTCGGTCCGCCTAATTTTCTGTGACAAAATGCACAATAGGGACGTTCACAAAATCCCTCGGAGCGAGAATTTGGAGTGCAATATCATTCCGCGCTTAGCCTTATACGAATCTTCTACGTTTCCGTCGATTGACGTGAATCTCAGTCTCAATGCGAATACCGTATCA
TACATGTAAAGGCATACGAACTCTGCAGAGCAGAAGAGAACAGAGACAGAGGCAGGGAAATGCTTGGCTTAAATAGTCCTCTATTATCAGGCCTGTCTCTTAGACTCGCTAGCTCACGGGGATATGATCAGAAATCTTCTCTCGGCTGGTATTTTCTGCAGGCAGAAAAACGCCATGTTTTGCGGTGCAATTCCTTTGTT
AACAGGCGGATATGCCTGTTTGCTTCACAAATATGTGAACCAGAGTCCTGAAAATGGTGACGGAGACAATGCGTTATTGCGACAGAAGCATTTTCGCTTCTATTCCGCTGTTTCCCCCCCAAGTTCAGACTTCTTTAATGGCGGAAAACTACGCGATAGCTTGCATTTAGGAGGCAGCAGAATGATAGGTATTTGCAGAA
TGCATAGCGATCCAGAAATATCAGATTTGAAGCATAGTGATGACAGAGAAGGTTTACTGTCGTTGGATACTCTTTGTGGGCAGTCAATTCAAAAGATTTCTACCAATGCATTCCACCGACCAAAATTTGTCCATCCTATGGCAATTGTGCACCCTGATGCTATTTTTGGCGAGGGGGTAATGAACAAATTCTCAACTTGC
AGGGCGTCGTGATTGGGCCATTTTGTACTGTGGGTCCAGCAACAAAGCTTGGAAATCGTTGTCAGTTGCATCCTGGATGTCATATCAGTGGAAACACAGAGTTAGGAGAAGGATGTGTGTTACTCACTGGTGCAGTTGTTGGTTCTGATCTACCAGGACGTACTGTTATTGGAAACAACAATTTTATTGGGTACCATGCA
GTTGTTGGAGTAAAATGTCAAGATCTGAAATACAGAGATGGTGATGACTGCTTCCTCTATATTGGAGACAACAATGACATCAGGGAACATGCTAGCATTCATCGATCATCCAAGCCAACGGATCAGACGGTCATTGGTGACAATAATCTTATTATGGGCTCCTGCCATATTGCTCATGATTGCAAACTGGGAAACCACAA
TATTTTTGCAAATGGTACACTATTGGGTGGCCATGTGGTGGTACAGAATCATGTTCATACTGGTGGAGCTGTTGCTGTTCACCAATTTTGCCACATAGGATCATTTGCATTTGTCGCTGGAGGCTCCGTGGTTACACATGATGTTCCTATGTACACGATGGTAGCTGGAGATCGAGCAGAACTTCGTGGATTGAATTTGG
AGGGTCTTCGTCGTCGTGGATTTTCTGATTTGGAGGTCAAGAGCATTAGACGAGCCTATCAGAAGCTATTCATGTGCACTGATGTCAATGCAGGAGGCTTAGAGGAACGTCTTGTTGAATTAGAGAAAAATGAAGAGCTAGCAAATGTGACAGCGGTAATTCTGATGGTAAAATCAGTTCGTGATTCTTTTAAGGAAAAT
CGCAGGGGTATTGTTAAGTTCAGGAATTGGACTCGCGACTGATGCATAGTTATAGTTTAGATACTATTTAATAGTTTAAGATATAATATCTGATTCCCAGAAGTGAAACCTATATTGTCCGATCCCATTATTGAAGGGGTAAAGTTACCTTAAAATTCATTTTTTGGCTGATTGCTAGTTATCATTATTTGTTTGGTCTC
GAGTGATCAGCATATTATGCGGTTGTGATCCAAACAATAAAACTATCCTGAAAACATGTAAAACCTTGCATTATTTTTCAGGACAAGCTTGATTCTTTGGACACTGCCTGTCTTTATAGTAATCCACTTCATTTGTCCCATAACATACATATGTATATTACATCTCTTTGCCAAATTGGCCTATATATTTTGGTTCCATG
TAGACTGGAGACATTGGCTCATCAAATCTGGATGTTTAGTTAATGAACTGTTACAAATATTTCACTGCTGCATAATCATTTTCTGACGGATAGGTATTAGAGTAAAAGATATAAGAAAACCTTCTTCCATAACAAAACACTACTGTAAGCTGTAACTTTTAGAAGGCAAATTCTTTGTATATATTTAATTCTTTCAAAAC
CTCAATACCGTGCACATTATCTGCAATTAACGTTGGAGTCATTAAATAATAAAGACTTCTGTCAGGCAATATTCTTCTAAGGATATCCTATTTGCTTAAAGCCTAATGTGTTGGTCTTTGTATGTAGTTCAGAAGGGTGCTGGCTAAATACAACTCAGTTGTACAGAAAAATAGGAGCTTCACCCCAAACTTGGGCTGTG
CAGTTCAAAATACTACTCTTAACCTCCATGTATATGCAATATCCATGGCTATATGCTAGCTTCTGTTTTAAGTCCTCTCTTATATGTGTAAAGGAGG
>TRINITY_DN113503_c0_g1_i5 from sample A2 / Example unspliced isoform:ATGGTGATGACTGCTTCCTCTATATTGGAGACAACAATGACATCAGGGAACATGCTAGCATTCATCGATCATCCAAGCCAACGGATCAGACGGTCATTGGTGACAATAATCTTATTATGGGCTCCTGCCATATTGCTCATGATTGCAAACTGGGAAACCACAATATTTTTGCAAATGGTACACTATTGGGTGGCCATGTG
GTGGTACAGAATCATGTTCATACTGGTGGAGCTGTTGCTGTTCACCAATTTTGCCACATAGGATCATTTGCATTTGTCGCTGGAGGCTCCGTGGTTACACATGATGTTCCTATGTACACGATGGTAGCTGGAGATCGAGCAGAACTTCGTGGATTGAATTTGGAGGGTCTTCGTCGTCGTGGATTTTCTGATTTGGAGGT
CAAGAGCATTAGACGAGCCTATCAGAAGCTATTCATGTGCACTGATGTCAATGCAGGAGGCTTAGAGGAACGTCTTGTTGAATTAgtaaggttctaacttccaaggcattgcttttgaagtggggagttttatacctttttaagaagatacattttacagttgaatcaggttagtagaaaagcttatgactccctttatg
cagGAGAAAAATGAAGAGCTAGCAAATGTGACAGCGGTAATTCTGATGGTAAAATCAGTTCGTGATTCTTTTAAGGAAAATCGCAGGGGTATTGTTAAGTTCAGGAATTGGACTCGCGACTGATGCATAGTTATAGTTTAGATACTATTTAATAGTTTAAGATATAATATCTGATTCCCAGAAGTGAAACCTATATTGTC
CGATCCCATTATTGAAGGGGTAAAGTTACCTTAAAATTCATTTTTTGGCTGATTGCTAGTTATCATTATTTGTTTGGTCTCGAGTGATCAGCATATTATGCGGTTGTGATCCAAACAATAAAACTATCCTGAAAACATGTAAAACCTTGCATTATTTTTCAGGACAAGCTTGATTCTTTGGACACTGCCTGTCTTTATAG
TAATCCACTTCATTTGTCCCATAACATACATATGTATATTACATCTCTTTGCCAAATTGGCCTATATATTTTGGTTCCATGTAGACTGGAGACATTGGCTCATCAAATCTGGATGTTTAGTTAATGAACTGTTACAAATATTTCACTGCTGCATAATCATTTTCTGACGGATAGGTATTAGAGTAAAAGATATAAGAAAA
CCTTCTTCCATAACAAAACACTACTGTAAGCTGTAACTTTTAGAAGGCAAATTCTTTGTATATATTTAATTCTTTCAAAACCTCAATACCGTGCACATTATCTGCAATTAACGTTGGAGTCATTAAATAATAAAGACTTCTGTCAGGCAATATTCTTCTAAGGATATCCTATTTGCTTAAAGCCTAATGTGTTGGTCTTT
GTATGTAGTTCAGAAGGGTGCTGGCTAAATACAACTCAGTTGTACAGAAAAATAGGAGCTTCACCCCAAACTTGGGCTGTGCAGTTCAAAATACTACTCTTAACCTCCATGTATATGCAATATCCATGGCTATATGCTAGCTTCTGTTTTAAGTCCTCTCTTATATGTGTAAAGGAGG
Intron 8 GCGTCGTGAT ... AAATACAGAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 54.5 | 21 | 24 | 26 |
| A2 | 62.65 | 18.8 | 31 | 31 |
| A3 | 69.65 | 13 | 29 | 30 |
| A4 | 65.55 | 9.8 | 20 | 17 |
| A5 | 50 | 11 | 15 | 7 |
| A6 | 77.62 | 13.4 | 33 | 59 |
| A7 | 78.24 | 26.4 | 74 | 113 |
| A8 | 83.19 | 14.4 | 42 | 96 |
| A9 | 71.38 | 32.4 | 90 | 71 |
| A10 | 74.97 | 31.8 | 82 | 107 |
>TRINITY_DN114921_c0_g1_i10 from sample A3 / Example spliced isoformGAAATATCAGATTTGAAGCATAGTGATGACAGAGAAGGTTTACTGTCGTTGGATACTCTTTGTGGGCAGTCAATTCAAAAGATTTCTACCAATGCATTCCACCGACCAAAATTTGTCCATCCTATGGCAATTGTGCACCCTGATGCTATTTTTGGCGAGGATGGTGATGACTGCTTCCTCTATATTGGAGACAACAATGA
CATCAGGGAACATGCTAGCATTCATCGATCATCCAAGCCAACGGATCAGACGGT
>TRINITY_DN114921_c0_g1_i5 from sample A3 / Example unspliced isoform:GAAATATCAGATTTGAAGCATAGTGATGACAGAGAAGGTTTACTGTCGTTGGATACTCTTTGTGGGCAGTCAATTCAAAAGATTTCTACCAATGCATTCCACCGACCAAAATTTGTCCATCCTATGGCAATTGTGCACCCTGATGCTATTTTTGGCGAGGgcgtcgtgattgggccattttgtactgtgggtccagcaac
aaagcttggaaatcgttgtcagttgcatcctggatgtcatatcagtggaaacacagagttaggagaaggatgtgtgttactcactggtgcagttgttggttctgatctaccagggcgtactgttattggaaacaacaattttattgggtaccatgcagttgttggagtaaaatgtcaagatctgaaatacagagATGGTG
ATGACTGCTTCCTCTATATTGGAGACAACAATGACATCAGGGAACATGCTAGCATTCATCGATCATCCAAGCCAACGGATCAGACGGTCATTGGTGACAATAATCTTATTATGGGCTCCTGCCATATTGCTCATGATTGCAAACTGGGAAACCACAATATTTTTGCAAATGGTACACTATTGGGTGGCCATGTGGTGGTA
CAGAATCATGTTCATACTGGTGGAGCTGTTGCTGTTCACCAATTTTGCCACATAGGATCATTTGCATTTGTCGCTGGAGGCTCCGTGGTTACACATGATGTTCCTATGTACACGATGGTAGCTGGAGATCGAGCAGAACTTCGTGGATTGAATTTGGAGGGTCTTCGTCGTCGTGGATTTTCTGATTTGGAGGTCAAGAG
CATTAGACGAGCCTATCAGAAGCTATTCATGTGCACTGATGTCAATGCAGGAGGCTTAGAGGAACGTCTTGTTGAATTAGTAAGGTTCTAACTTCCAAGGCATTGCTTTTGAAGTGGGGAGTTTTATACCTTTTTAAGAAGATACATTTTACAGTTGAATCAGGTTAGTAGAAAAGCTTATGACTCCCTTTATGCAGGAG
AAAAATGAAGAGCTAGCAAATGTGACAGCGGTAATTCTGATGGTAAAATCAGTTCGTGATTCTTTTAAGGAAAATCGCAGGGGTATTGTTAAGTTCAGGAATTGGACTCGCGACTGATGCATAGTTATAGTTTAGATACTATTTAATAGTTTAAGATATAATATCTGATTCCCAGAAGTGAAACCTATATTGTCCGATCC
CATTATTGAAGGGGTAAAGTTACCTTAAAATTCATTTTTTGGCTGATTGCTAGTTATCATTATTTGTTTGGTCTCGAGTGATCAGCATATTATGCGGTTGTGATCCAAACAATAAAACTATCCTGAAAACATGTAAAACCTTGCATTATTTTTCAGGACAAGCTTGATTCTTTGGACACTGCCTGTCTTTATAGTAATCC
ACTTCATTTGTCCCATAACATACATATGTATATTACATCTCTTTGCCAAATTGGCCTATATATTTTGG
Intron 9 GTGTGTTACT ... TGCCAAACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 36.84 | 21 | 14.5 | 10 |
| A2 | 22.75 | 28 | 12.5 | 4 |
| A3 | 25.66 | 34 | 18.5 | 5 |
| A4 | 28.8 | 21 | 13 | 4 |
| A5 | 32.27 | 12 | 8.5 | 3 |
| A6 | 26.13 | 53 | 23.5 | 14 |
| A7 | 23.32 | 111 | 37.5 | 30 |
| A8 | 27.35 | 81 | 25 | 36 |
| A9 | 28.74 | 96 | 55.5 | 22 |
| A10 | 25.09 | 100 | 33 | 34 |
>TRINITY_DN41941_c1_g1_i3 from sample A8 / Example spliced isoformAGCGGTTTTATGTCAAACCCACGATGGACCGACATGTCGGTCCGCCTAATTTTCTGTGACAAAATGCACAATAGGGACGTTCACAAAATCCCTCGGAGCGAGAATTTGGAGTGCAATATCATTCCGCGCTTAGCCTTATACGAATCTTCTACGTTTCCGTCGATTGACGTGAATCTCAGTCTCAATGCGAAAACCGTATC
ATACATGTAAAGGCATACGAACTCTGCAGAGCAGAAGAGAACAGAGACAGAGGCAGGGAAATGCTTGGCTTAAATAGTCCTCTATTATCAGGCCTGTCTCTTAGACTCGCTAGCTCACGGGGATATGATCAGAAATCTTCTCTCGGCTGGTATTTTCTGCAGGCAGAAAAACGCCATGTTTTGCGGTGCAATTCCTTTGT
TAACAGGCGGATATGCCTGTTTGCTTCACAAATATGTGAACCAGAGTCCTGAAAATGGTGACGGAGACAATGCGTTATTGCGACAGAAGCATTTTCGCTTCTATTCCGCTGTTTCCCCCCCAAGTTCAGACTTCTTTAATGGCGGAAAACTACGCGATAGCTTGCATTTAGGAGGCAGCAGAATGACAGGTATTTGCAGA
ATGCATAGCGATCCAGAAATATCAGATTTGAAGCATAGTGATGACAGAGAAGGTTTACTGTCGTTGGATACTCTTTGTGGGCAGTCAATTCAAAAGATTTCTACCAATGCATTCCACCGACCAAAATTTGTCCATCCTATGGCAATTGTGCACCCTGATGCTATTTTTGGCGAGGGGGTAATGAACAAATTCTCAACTTG
CAGGGCGTCGTGATTGGGCCATTTTGTACTGTGGGTCCAGCAACAAAGCTTGGAAATCGTTGTCAGTTGCATCCTGGATGTCATATCAGTGGAAACACAGAGTTAGGAGAAGGATTGGTGCAGTTGTTGGTTCTGATCTACCAGGGCGTACTGTTATTGGAAACAACAATTTTATTGGGTACCATGCAGTTGTTGGAGTA
AAATGTCAAGATCTGAAATACAGAGATGGTGATGACTGCTTCCTCTATATTGGAGACAACAATGACATCAGGGAACATGCTAGCATTCATCGATCATCCAAGCCAACGGATCAGACGACTCATCTTGGTAGGTCATTGGTGACAATAATCTTATTATGGGCTCCTGCCATATTGCTCATGATTGCAAACTGGGAAACCAC
AATATTTTTGCAAATGGTACACTATTGGGTGGCCATGTGGTGGTACAGAATCATGTTCATACTGGTGGAGCTGTTGCTGTTCACCAATTTTGCCACATAGGATCATTTGCATTTGTCGCTGGAGGCTCCGTGGTTACACATGATGTTCCTATGTACACGATGGTAGCTGGAGATCGAGCAGAACTTCGTGGATTGAATTT
GGAGGGTCTTCGTCGTCGTGGATTTTCTGATTTGGAGGTCAAGAGCATTAGACGAGCCTATCAGAAGCTATTCATGTGCACTGATGTCAATGCAGGAGGCTTAGAGGAACGTCTTGTTGAATTAGAGAAAAATGAAGAGCTAGCAAATGTGACAGCGGTAATTCTGATGGTAAAATCAGTTCGTGATTCTTTTAAGGAAA
ATCGCAGGGGTATTGTTAAGTTCAGGAATTGGACTCGCGACTGATGCATAGTTATAGTTTAGATACTATTTAATAGTTTAAGATATAATATCTGATTCCCAGAAGTGAAACCTATATTGTCCGATCCCATTATTGAAGGGGTAAAGTTACCTTAAAATTCATTTTTTGGCTGATTGCTAGTTATCATTATTTGTTTGGTC
TCGAGTGATCAGCATATTATGCGGTTGTGATCCAAACAATAAAACTATCCTGAAAACATGTAAAACCTTGCATTATTTTTCAGGACAAGCTTGATTCTTTGGACACTGCCTGTCTTTATAGTAATCCACTTCATTTGTCCCATAACATACATATGTATATTACATCTCTTTGCCAAATTGGCCTATATATTTTGGTTCCA
TGTAGACTGGAGACATTGGCTCATCAAATCTGGATGTTTAGTTAATGAACTGTTACAAATATTTCACTGCTGC
>TRINITY_DN41941_c1_g1_i13 from sample A8 / Example unspliced isoform:AGCGGTTTTATGTCAAACCCACGATGGACCGACATGTCGGTCCGCCTAATTTTCTGTGACAAAATGCACAATAGGGACGTTCACAAAATCCCTCGGAGCGAGAATTTGGAGTGCAATATCATTCCGCGCTTAGCCTTATACGAATCTTCTACGTTTCCGTCGATTGACGTGAATCTCAGTCTCAATGCGAAAACCGTATC
ATACATGTAAAGGCATACGAACTCTGCAGAGCAGAAGAGAACAGAGACAGAGGCAGGGAAATGCTTGGCTTAAATAGTCCTCTATTATCAGGCCTGTCTCTTAGACTCGCTAGCTCACGGGGATATGATCAGAAATCTTCTCTCGGCTGGTATTTTCTGCAGGCAGAAAAACGCCATGTTTTGCGGTGCAATTCCTTTGT
TAACAGGCGGATATGCCTGTTTGCTTCACAAATATGTGAACCAGAGTCCTGAAAATGGTGACGGAGACAATGCGTTATTGCGACAGAAGCATTTTCGCTTCTATTCCGCTGTTTCCCCCCCAAGTTCAGACTTCTTTAATGGCGGAAAACTACGCGATAGCTTGCATTTAGGAGGCAGCAGAATGACAGGTATTTGCAGA
ATGCATAGCGATCCAGAAATATCAGATTTGAAGCATAGTGATGACAGAGAAGGTTTACTGTCGTTGGATACTCTTTGTGGGCAGTCAATTCAAAAGATTTCTACCAATGCATTCCACCGACCAAAATTTGTCCATCCTATGGCAATTGTGCACCCTGATGCTATTTTTGGCGAGGGCGTCGTGATTGGGCCATTTTGTAC
TGTGGGTCCAGCAACAAAGCTTGGAAATCGTTGTCAGTTGCATCCTGGATGTCATATCAGTGGAAACACAGAGTTAGGAGAAGGATgtgtgttactcacgtgggttacccataggattagtgcactcctattgcataaagtttttttaggagaaagatatgtagcattctaagttagctattctacaatacacaaatttt
tgaactttggaagcctttgccaatgcttgttcattattgtagattgtttccaaaaccatggatatcagtaaggtttcttgtctatatgattgatttgttttgttgcaattttgccaaacagTGGTGCAGTTGTTGGTTCTGATCTACCAGGGCGTACTGTTATTGGAAACAACAATTTTATTGGGTACCATGCAGTTGTT
GGAGTAAAATGTCAAGATCTGAAATACAGAGATGGTGATGACTGCTTCCTCTATATTGGAGACAACAATGACATCAGGGAACATGCTAGCATTCATCGATCATCCAAGCCAACGGATCAGACGACTCATCTTGGTAGGTCATTGGTGACAATAATCTTATTATGGGCTCCTGCCATATTGCTCATGATTGCAAACTGGGA
AACCACAATATTTTTGCAAATGGTACACTATTGGGTGGCCATGTGGTGGTACAGAATCATGTTCATACTGGTGGAGCTGTTGCTGTTCACCAATTTTGCCACATAGGATCATTTGCATTTGTCGCTGGAGGCTCCGTGGTTACACATGATGTTCCTATGTACACGATGGTAGCTGGAGATCGAGCAGAACTTCGTGGATT
GAATTTGGAGGGTCTTCGTCGTCGTGGATTTTCTGATTTGGAGGTCAAGAGCATTAGACGAGCCTATCAGAAGCTATTCATGTGCACTGATGTCAATGCAGGAGGCTTAGAGGAACGTCTTGTTGAATTAGAGAAAAATGAAGAGCTAGCAAATGTGACAGCGGTAATTCTGATGGTAAAATCAGTTCGTGATTCTTTTA
AGGAAAATCGCAGGGGTATTGTTAAGTTCAGGAATTGGACTCGCGACTGATGCATAGTTATAGTTTAGATACTATTTAATAGTTTAAGATATAATATCTGATTCCCAGAAGTGAAACCTATATTGTCCGATCCCATTATTGAAGGGGTAAAGTTACCTTAAAATTCATTTTTTGGCTGATTGCTAGTTATCATTATTTGT
TTGGTCTCGAGTGATCAGCATATTATGCGGTTGTGATCCAAACAATAAAACTATCCTGAAAACATGTAAAACCTTGCATTATTTTTCAGGACAAGCTTGATTCTTTGGACACTGCCTGTCTTTATAGTAATCCACTTCATTTGTCCCATAACATACATATGTATATTACATCTCTTTGCCAAATTGGCCTATATATTTTG
GTTCCATGTAGACTGGAGACATTGGCTCATCAAATCTGGATGTTTAGTTAATGAACTGTTACAAATATTTCACTGCTGC
Intron 10 GTAAGCTGTT ... TGGGTCACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 31.94 | 19.5 | 3 | 9 |
| A2 | 27.97 | 20.7 | 4 | 8 |
| A3 | 45.56 | 20.3 | 6 | 17 |
| A4 | 39.39 | 12.3 | 2 | 8 |
| A5 | 72.5 | 1.2 | 1 | 3 |
| A6 | 27.42 | 47.7 | 5 | 18 |
| A7 | 29.4 | 67.3 | 3 | 28 |
| A8 | 30.94 | 76.3 | 8 | 34 |
| A9 | 31.87 | 68.5 | 3 | 32 |
| A10 | 30.64 | 88.3 | 7 | 39 |
>TRINITY_DN113503_c0_g1_i14 from sample A2 / Example spliced isoformGCGGTTTTATGTCAAACCCACGATGGACCGACATGTCGGTCCGCCTAATTTTCTGTGACAAAATGCACAATAGGGACGTTCACAAAATCCCTCGGAGCGAGAATTTGGAGTGCAATATCATTCCGCGCTTAGCCTTATACGAATCTTCTACGTTTCCGTCGATTGACGTGAATCTCAGTCTCAATGCGAATACCGTATCA
TACATGTAAAGGCATACGAACTCTGCAGAGCAGAAGAGAACAGAGACAGAGGCAGGGAAATGCTTGGCTTAAATAGTCCTCTATTATCAGGCCTGTCTCTTAGACTCGCTAGCTCACGGGGATATGATCAGAAATCTTCTCTCGGCTGGTATTTTCTGCAGGCAGAAAAACGCCATGTTTTGCGGTGCAATTCCTTTGTT
AACAGGCGGATATGCCTGTTTGCTTCACAAATATGTGAACCAGAGTCCTGAAAATGGTGACGGAGACAATGCGTTATTGCGACAGAAGCATTTTCGCTTCTATTCCGCTGTTTCCCCCCCAAGTTCAGACTTCTTTAATGGCGGAAAACTACGCGATAGCTTGCATTTAGGAGGCAGCAGAATGATAGGTATTTGCAGAA
TGCATAGCGATCCAGAAATATCAGATTTGAAGCATAGTGATGACAGAGAAGGTTTACTGTCGTTGGATACTCTTTGTGGGCAGTCAATTCAAAAGATTTCTACCAATGCATTCCACCGACCAAAATTTGTCCATCCTATGGCAATTGTGCACCCTGATGCTATTTTTGGCGAGGGGGTAATGAACAAATTCTCAACTTGC
AGGGCGTCGTGATTGGGCCATTTTGTACTGTGGGTCCAGCAACAAAGCTTGGAAATCGTTGTCAGTTGCATCCTGGATGTCATATCAGTGGAAACACAGAGTTAGGAGAAGGATGTGTGTTACTCACTGGTGCAGTTGTTGGTTCTGATCTACCAGGACGTACTGTTATTGGAAACAACAATTTTATTGGGTACCATGCA
GTTGTTGGAGTAAAATGTCAAGATCTGAAATACAGAGATGGTGATGACTGCTTCCTCTATATTGGAGACAACAATGACATCAGGGAACATGCTAGCATTCATCGATCATCCAAGCCAACGGATCAGACGGTCATTGGTGACAATAATCTTATTATGGGCTCCTGCCATATTGCTCATGATTGCAAACTGGGAAACCACAA
TATTTTTGCAAATGGTACACTATTGGGTGGCCATGTGGTGGTACAGAATCATGTTCATACTGGTGGAGCTGTTGCTGTTCACCAATTTTGCCACATAGGATCATTTGCATTTGTCGCTGGAGGCTCCGTGGTTACACATGATGTTCCTATGTACACGATGGTAGCTGGAGATCGAGCAGAACTTCGTGGATTGAATTTGG
AGGGTCTTCGTCGTCGTGGATTTTCTGATTTGGAGGTCAAGAGCATTAGACGAGCCTATCAGAAGCTATTCATGTGCACTGATGTCAATGCAGGAGGCTTAGAGGAACGTCTTGTTGAATTAGAGAAAAATGAAGAGCTAGCAAATGTGACAGCGGTAATTCTGATGGTAAAATCAGTTCGTGATTCTTTTAAGGAAAAT
CGCAGGGGTATTGTTAAGTTCAGGAATTGGACTCGCGACTGATGCATAGTTATAGTTTAGATACTATTTAATAGTTTAAGATATAATATCTGATTCCCAGAAGTGAAACCTATATTGTCCGATCCCATTATTGAAGGGGTAAAGTTACCTTAAAATTCATTTTTTGGCTGATTGCTAGTTATCATTATTTGTTTGGTCTC
GAGTGATCAGCATATTATGCGGTTGTGATCCAAACAATAAAACTATCCTGAAAACATGTAAAACCTTGCATTATTTTTCAGGACAAGCTTGATTCTTTGGACACTGCCTGTCTTTATAGTAATCCACTTCATTTGTCCCATAACATACATATGTATATTACATCTCTTTGCCAAATTGGCCTATATATTTTGGTTCCATG
TAGACTGGAGACATTGGCTCATCAAATCTGGATGTTTAGTTAATGAACTGTTACAAATATTTCACTGCTGCATAATCATTTTCTGACGGATAGGTATTAGAGTAAAAGATATAAGAAAACCTTCTTCCATAACAAAACACTACTGTAAGCTGTAACTTTTAGAAGGCAAATTCTTTGTATATATTTAATTCTTTCAAAAC
CTCAATACCGTGCACATTATCTGCAATTAACGTTGGAGTCATTAAATAATAAAGACTTCTGTCAGGCAATATTCTTCTAAGGATATCCTATTTGCTTAAAGCCTAATGTGTTGGTCTTTGTATGTAGTTCAGAAGGGTGCTGGCTAAATACAACTCAGTTGTACAGAAAAATAGGAGCTTCACCCCAAACTTGGGCTGTG
CAGTTCAAAATACTACTCTTAACCTCCATGTATATGCAATATCCATGGCTATATGCTAGCTTCTGTTTTAAGTCCTCTCTTATATGTGTAAAGGAGG
>TRINITY_DN113503_c0_g1_i10 from sample A2 / Example unspliced isoform:TCCAAGCCAACGGATCAGACGGTAAAAAAGGGCTGATGCATTCTTTTCATGAAAATTCTGCAAATGCCTTTGAAGATTTGCTTGCAGTTGCATATTTGTAAATCTGTTTTTGTGTTTAAAGCTGTAAGGCCTCACACTGCAGACTCATCTTGGTAGGTCATTGGTGACAATAATCTTATTATGGGCTCCTGCCATATTGC
TCATGATTGCAAACTGGGAAACCACAATATTTTTGCAAATGGTACACTATTGGGTGGCCATGTGGTGGTACAGgtaagctgtttgtctctttatgcaaagttgaatcaggcaacttatccattcttgtagtccttatatttcaagttgcttatgtcatatacggtaagactccaaagtcactggctttgatctttgaaac
atctttgggtcacagAATCATGTTCATACTGGTGGAGCTGTTGCTGTTCACCAATTTTGCCACATAGGATCATTTGCATTTGTCGCTGGAGGCTCCGTGGTTACACATGATGTTCCTATGTACACGATGGTAGCTGGAGATCGAGCAGAACTTCGTGGATTGAATTTGGAGGGTCTTCGTCGTCGTGGATTTTCTGATTT
GGAGGATGGTGATGACTGCTTCCTCTATATTGGAGACAACAATGACATCAGGGAACATGCTAGCATTCATCGATCATCCAAGCCAACGGATCAGACGGTCATTGGTGACAATAATCTTATTATGGGCTCCTGCCATATTGCTCATGATTGCAAACTGGGAAACCACAATATTTTTGCAAATGGTACACTATTGGGTGGCC
ATGTGGTGGTACAGAATCATGTTCATACTGGTGGAGCTGTTGCTGTTCACCAATTTTGCCACATAGGATCATTTGCATTTGTCGCTGGAGGCTCCGTGGTTACACATGATGTTCCTATGTACACGATGGTAGCTGGAGATCGAGCAGAACTTCGTGGATTGAATTTGGAGGGTCTTCGTCGTCGTGGATTTTCTGATTTG
GAGGT
Intron 11 GTGGGTTACC ... TGCCAAACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 35.59 | 19 | 11 | 10 |
| A2 | 22.5 | 29 | 12.8 | 4 |
| A3 | 22.67 | 31 | 13.2 | 5 |
| A4 | 28.28 | 20.5 | 12.2 | 4 |
| A5 | 30.33 | 12 | 7.5 | 3 |
| A6 | 25.52 | 47.5 | 18.6 | 14 |
| A7 | 24.03 | 107.5 | 38 | 30 |
| A8 | 26.53 | 75 | 18.2 | 36 |
| A9 | 25.2 | 94 | 41.3 | 22 |
| A10 | 22.91 | 101 | 26 | 34 |
>TRINITY_DN45749_c0_g1_i1 from sample A7 / Example spliced isoformCCCGGGGAGCGGTTTTATGTCAAACCCACGATGGACCGACATGTCGGTCCGCCTAATTTTCTGTGACAAAATGCACAATAGGGACGTTCACAAAATCCCTCGGAGCGAGAATTTGGAGTGCAATATCATTCCGCGCTTAGCCTTATACGAATCTTCTACGTTTCCGTCGATTGACGTGAATCTCAGTCTCAATGCGAAAA
CCGTATCATACATGTAAAGGCATACGAACTCTGCAGAGCAGAAGAGAACAGAGACAGAGGCAGGGAAATGCTTGGCTTAAATAGTCCTCTATTATCAGGCCTGTCTCTTAGACTCGCTAGCTCACGGGGATATGATCAGAAATCTTCTCTCGGCTGGTATTTTCTGCAGGCAGAAAAACGCCATGTTTTGCGGTGCAATT
CCTTTGTTAACAGGCGGATATGCCTGTTTGCTTCACAAATATGTGAACCAGAGTCCTGAAAATGGTGACGGAGACAATGCGTTATTGCGACAGAAGCATTTTCGCTTCTATTCCACTGTTTTCCCCCCAAGTTCAGACTTCTTTAATGGCGGAAAACTACGCGATAGCTTGCATTTAGGAGGCAGCAGAATGATAGGTAT
TTGCAGAATGCATAGCGCTTTAGGTTGAAGCATGTTGAATGCAAGCCTGCTGATTTGCAGAGATGGATGCTCAATGTCTTCTACGGATTCAAGATGGCTGATTTGCACACAATATTGTTCCTCATCAAAATCTGATTCATAGTTGAAAGCTTCGATAGGTGCTGACTGAGAAAGCTTATCTTCTTCATCAGAATACTCAT
CATACTTAGATCCAGAAATATCAGATTTGAAGCATAGTGATGACAGAGAAGGTTTACTGTCGTTGGATACTCTTTGTGGGCAGTCAATTCAAAAGATTTCTACCAATGCATTCCACCGACCAAAATTTGTCCATCCTATGGCAATTGTGCACCCTGATGCTATTTTTGGCGAGGGCGTCGTGATTGGGCCATTTTGTACT
GTGGGTCCAGCAACAAAGCTTGGAAATCGTTGTCAGTTGCATCCTGGATGTCATATCAGTGGAAACACAGAGTTAGGAGAAGGATGTGTGTTACTCACTGGTGCAGTTGTTGGTTCTGATCTACCAGGGCGTACTGTTATTGGAAACAACAATTTTATTGGGTACCATGCAGTTGTTGGAGTAAAATGTCAAGATCTGAA
ATACAGAGATGGTGATGACTGCTTCCTCTATATTGGAGACAACAATGACATCAGGGAACATGCTAGCATTCATCGATCATCCAAGCCAACGGATCAGACGGTCATTGGTGACAATAATCTTATTATGGGCTCCTGCCATATTGCTCATGATTGCAAACTGGGAAACCACAATATTTTTGCAAATGGTACACTATTGGGTG
GCCATGTGGTGGTACAGAATCATGTTCATACTGGTGGAGCTGTTGCTGTTCACCAATTTTGCCACATAGGATCATTTGCATTTGTCGCTGGAGGCTCCGTGGTTACACATGATGTTCCTATGTACACGATGGTAGCTGGAGATCGAGCAGAACTTCGTGGATTGAATTTGGAGGGTCTTCGTCGTCGTGGATTTTCTGAT
TTGGAGGTCAAGAGCATTAGACGAGCCTATCAGAAGCTATTCATGTGCACTGATGTCAATGCAGGAGGCTTAGAGGAACGTCTTGTTGAATTAGAGAAAAATGAAGAGCTAGCAAATGTGACAGCGGTAATTCTGATGGTAAAATCAGTTCGTGATTCTTTTAAGGAAAATCGCAGGGGTATTGTTAAGTTCAGGAATTG
GACTCGCGACTGATGCATAGTTATAGTTTAGATACTATTTAATAGTTTAAGATATAATATCTGATTCCCAGAAGTGAAACCTATATTGTCCGATCCCATTATTGAAGGGGTAAAGTTACCTTAAAATTCATTTTTTGGCTGATTGCTAGTTATCATTATTTGTTTGGTCTCGAGTGATCAGCATATTATGCGGTTGTGAT
CCAAACAATAAAACTATCCTGAAAACATGTAAAACCTTGCATTATTTTTCAGGACAAGCTTGATTCTTTGGACACTGCCTGTCTTTATAGTAATCCACTTCATTTGTCCCATAACATACATATGTATATTACATCTCTTTGCCAAATTGGCCTATATATTTTGGTTCCATGTAGACTGGAGACATTGGCTCATCAAATCT
GGATGTTTAGTTAATGAACTGTTACAAATATTTCACTGCTGCATAATCATTTTCTGATGGATAGGTATTAGAGTAAAAGATATAAGAAAACCTTCTTGCATAACAAAACACTACTGTAAGCTGTAACTTTTAGAAGGCAAATTCTTTGTATATATTTAATTCTTTCAAAACCTCAA
>TRINITY_DN45749_c0_g1_i16 from sample A7 / Example unspliced isoform:CCCGGGGAGCGGTTTTATGTCAAACCCACGATGGACCGACATGTCGGTCCGCCTAATTTTCTGTGACAAAATGCACAATAGGGACGTTCACAAAATCCCTCGGAGCGAGAATTTGGAGTGCAATATCATTCCGCGCTTAGCCTTATACGAATCTTCTACGTTTCCGTCGATTGACGTGAATCTCAGTCTCAATGCGAAAA
CCGTATCATACATGTAAAGGCATACGAACTCTGCAGAGCAGAAGAGAACAGAGACAGAGGCAGGGAAATGCTTGGCTTAAATAGTCCTCTATTATCAGGCCTGTCTCTTAGACTCGCTAGCTCACGGGGATATGATCAGAAATCTTCTCTCGGCTGGTATTTTCTGCAGGCAGAAAAACGCCATGTTTTGCGGTGCAATT
CCTTTGTTAACAGGCGGATATGCCTGTTTGCTTCACAAATATGTGAACCAGAGTCCTGAAAATGGTGACGGAGACAATGCGTTATTGCGACAGAAGCATTTTCGCTTCTATTCCACTGTTTTCCCCCCAAGTTCAGACTTCTTTAATGGCGGAAAACTACGCGATAGCTTGCATTTAGGAGGCAGCAGAATGATAGGTAT
TTGCAGAATGCATAGCGGTTGAAGCATGTTGAATGCAAGCCTGCTGATTTGCAGAGATGGATGCTCAATGTCTTCTACGGATTCAAGATGGCTGATTTGCACACAATATTGTTCCTCATCAAAATCTGATTCATAGTTGAAAGCTTCGATAGGTGCTGACTGAGAAAGCTTATCTTCTTCATCAGAATACTCATCATACT
TAGATCCAGAAATATCAGATTTGAAGCATAGTGATGACAGAGAAGGTTTACTGTCGTTGGATACTCTTTGTGGGCAGTCAATTCAAAAGATTTCTACCAATGCATTCCACCGACCAAAATTTGTCCATCCTATGGCAATTGTGCACCCTGATGCTATTTTTGGCGAGGGCGTCGTGATTGGGCCATTTTGTACTGTGGGT
CCAGCAACAAAGCTTGGAAATCGTTGTCAGTTGCATCCTGGATGTCATATCAGTGGAAACACAGAGTTAGGAGAAGGATGTGTGTTACTCACgtgggttacccataggattagtgcactcctattgcataaagtttttttaggagaaagatatgtagcattctaagttagctattctacaatactcaaatttttgaactt
tggaagcctttgccaatgcttgttcattattgtagattgtttccaaaaccatggatatcagtaaggtttcttgtctatatgattgatttgttttgttgcaattttgccaaacagTGGTGCAGTTGTTGGTTCTGATCTACCAGGGCGTACTGTTATTGGAAACAACAATTTTATTGGGTACCATGCAGTTGTTGGAGTAA
AATGTCAAGATCTGAAATACAGAGATGGTGATGACTGCTTCCTCTATATTGGAGACAACAATGACATCAGGGAACATGCTAGCATTCATCGATCATCCAAGCCAACGGATCAGACGGTAAAAAAGGGCTGATGCATTCTTTTCATGAAAATTCTGCAAATGCCTTTGAAGATTTGCTTGCA
Intron 12 GTACGTATTA ... CATTTAACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 24.24 | 25 | 8 | 7 |
| A2 | 20 | 24 | 6 | 3 |
| A3 | 32.79 | 41 | 20 | 2 |
| A4 | 22.73 | 34 | 10 | 2 |
| A5 | 30.77 | 9 | 4 | 4 |
| A6 | 21.43 | 33 | 9 | 1 |
| A7 | 30.91 | 38 | 17 | 0 |
| A8 | 21.88 | 25 | 7 | 0 |
| A9 | 18.64 | 48 | 11 | 0 |
| A10 | 24 | 57 | 18 | 0 |
>TRINITY_DN104587_c0_g1_i1 from sample A4 / Example spliced isoformCTCAAACCCACGATGGACCGACATGTCGGTCCGCCTAATTTTCTGTGACAAAATGCACAATAGGGACGTTCACAAAATCCCTCGGAGCGAGAATTTGGAGTGCAATATCATTCCGCGCTTAGCCTTATACGAATCTTCTACGTTTCCGTCGATTGACGTGAATCTCAGTCTCAATGCGAAAACCGTATCATACATGTAAA
GGCATACGAACTCTGCAGAGCAGAAGAGAACAGAGACAGAGGCAGGGAAATGCTTGGCTTAAATAGTCCTCTATTATCAGGCCTGTCTCTTAGACTCGCTAGCTCACGGGGATATGATCAGAAATCTTCTCTCTGCTGGTATTTTCTGCAGGCAGAAAAACGCCATGTTTTGCGGTGCAATTCCTTTGTTAACAGGCGGA
TATGCCTGTTTGCTTCACAAATATGTGAACCAGAGTCCTGAAAATGGTGACGGAGACAATGCGTTATTGCGACAGAAGCATTTTCGCTTCTATTCCACTGTTTTCCCCCCAAGTTCAGACTTCTTTAATGGCGGAAAACTACGCGATAGCTTGCATTTAGGAGGCAGCAGAATGATAGGTATTTGCAGAATGCATAGCGA
TCCAGAAATATCAGATTTGAAGCATAGTGATGACAGAGAAGGTTTACTGTCGTTGGATACTCTTTGTGGGCAGTCAATTCAAAAGATTTCTACCAATGCATTCCACCGACCAAAATTTGTCCATCCTATGGCAATTGTGCACCCTGATGCTATTTTTGGCGAGGGGGTAATGAACAAATTCTCAACTTGCAGGGCGTCGT
GATTGGGCCATTTTGTACTGTGGGTCCAGCAACAAAGCTTGGAAATCGTTGTCAGTTGCATCCTGGATGTCATATCAGTGGAAACACAGAGTTAGGAGAAGGATTGGTGCAGTTGTTGGTTCTGATCTACCAGGGCGTACTGTTATTGGAAACAACAATTTTATTGGGTACCATGCAGTTGTTGGAGTAAAATGTCAAGA
TCTGAAATACAGAGATGGTGATGACTGCTTCCTCTATATTGGAGACAACAACGACATCAGGGAACATGCTAGCATTCATCGATCATCCAAGCCAACGGATCAGACGGTCATTGGTGACAATAATCTTATTATGGGCTCCTGCCATATTGCTCATGATTGCAAACTGGGAAACCACAATATTTTTGCAAATGGTACACTAT
TGGGTGGCCATGTGGTGGTACAGAATCATGTTCATACTGGTGGAGCTGTTGCTGTTCACCAATTTTGCCACATAGGATCATTTGCATTTGTCGCTGGAGGCTCCGTGGTTACACATGATGTTCCTATGTACACGATGGTAGCTGGAGATCGAGCAGAACTTCGTGGATTGAATTTGGAGGGTCTTCGTCGTCGTGGATTT
TCTGATTTGGAGGTCAAGAGCATTAGACGAGCCTATCAGAAGCTATTCATGTGCACTGATGTCAATGCAGGAGGCTTAGAGGAACGTCTTGTTGAATTAGAGAAAAATGAAGAGCTAGCAAATGTGACAGCGGTAATTCTGATGGTAAAATCAGTTCGTGATTCTTTTAAGGAAAATCGCAGGGGTATTGTTAAGTTCAG
GAATTGGACTCGCGACTGATGCATAGTTATAGTTTAGATACTATTTAATAGTTTAAGATATAATATCTGATTCCCAGAAGTGAAACCTATATTGTCCGATCCCATTATTGAAGGGGTAAAGTTACCTTAAAATTCATTTTTTGGCTGATTGCTAGTTATCATTATTTGTTTGGTCTCGAGTGATCAGCATATTATGCGGT
TGTGATCCAAACAATAAAACTATCCTGAAAACATGTAAAACCTTGCATTATTTTTCAGGACAAGCTTGATTCTTTGGACACTGCCTGTCTTTATAGTAATCCACTTCATTTGTCCCATAACATACATATGTATATTACATCTCTTTGCCAAATTGGCCTATATATTTTGGTTCCATGTAGACTGGAGACATTGGC
>TRINITY_DN104587_c0_g1_i7 from sample A4 / Example unspliced isoform:CTCAAACCCACGATGGACCGACATGTCGGTCCGCCTAATTTTCTGTGACAAAATGCACAATAGGGACGTTCACAAAATCCCTCGGAGCGAGAATTTGGAGTGCAATATCATTCCGCGCTTAGCCTTATACGAATCTTCTACGTTTCCGTCGATTGACGTGAATCTCAGTCTCAATGCGAAAACCGTATCATACATGTAAA
GGCATACGAACTCTGCAGAGCAGAAGAGAACAGAGACAGAGGCAGGGAAATGCTTGGCTTAAATAGTCCTCTATTATCAGGCCTGTCTCTTAGACTCGCTAGCTCACGGGGATATGATCAGAAATCTTCTCTCTGCTGGTATTTTCTGCAGGCAGAAAAACGCCATGTTTTGCGGTGCAATTCCTTTGTTAACAGGCGGA
TATGCCTGTTTGCTTCACAAATATGTGAACCAGAGTCCTGAAAATGGTGACGGAGACAATGCGTTATTGCGACAGAAGCATTTTCGCTTCTATTCCACTGTTTTCCCCCCAAGTTCAgtacgtattaaactacactttatatccttaaagagctaactcgagatttattcatttgttttttctcggacaaagaacctgga
aatatcatctgtcatttaacagGACTTCTTTAATGGCGGAAAACTACGCGATAGCTTGCATTTAGGAGGCAGCAGAATGATAGGTATTTGCAGAATGCATAGCGGTAAGTAGCTTTATCTTCTAGTAATTTGATGATTTTGATAACGGTGCTGGTTATGCTAAAGCTAAATCTGAGTAATAGTGGTGATTTTAACAGCTG
GCTATCATAACCTAAGTCTCATTGACTATGTCGGCTGATCATTTTATATTATTCCAACAGCCGTTTGCACTGCCTGATAAGTCAAGTCAGTATGAAATACAATCTTTAACATTTTATTCCGCAGAATGAGTAAATTAGAGTAACATTTCTTGAAGTACTTCAAGAAATTGGCAGAGTACTGAATTTAATGGAAGTTATTT
TAGTCAAATTAAATCCAGTCCAAACTGTTGTTTAATATATCTTCCAGCTCAAAATACTCCTCAACCTCTTTAATACCGTGCCAGAATGATTACTTAGACTGTTTCAGCTTAATCTTTAAATCTCACAGAGTAAAGGCAGGGATTATCTCCTGCAGGCTGAAAGTTAAGCTAAATACTACGAAC
Intron 13 GTAAAGTCGA ... TGTAATGTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 23.33 | 23 | 11 | 3 |
| A2 | 18.37 | 20 | 4 | 5 |
| A3 | 3.03 | 32 | 2 | 0 |
| A4 | 18.92 | 30 | 5 | 9 |
| A5 | 44.44 | 5 | 2 | 6 |
| A6 | 14.78 | 49 | 9 | 8 |
| A7 | 15.24 | 89 | 16 | 16 |
| A8 | 15.04 | 96 | 15 | 19 |
| A9 | 15.42 | 85 | 13 | 18 |
| A10 | 13.43 | 87 | 18 | 9 |
>TRINITY_DN117800_c1_g2_i12 from sample A1 / Example spliced isoformAGTCAAGATGGCTGATTTGCGCACAATATTGTTCCTCATCAAAATCTGATTCATAGTTGAAAGCTTCGATAGGTGCTGACTGAGAAAGCTTCTCTTCTTCATCAGAATACTCATCATACTTAGATCCAGAAATATCAGATTTGAAGCATAGTGATGACAGAGAAGGTTTACTGTCGTTGGATACTCTTTGTGGGCAGTCA
ATTCAAAAGATTTCTACCAATGCATTCCACCGACCAAAATTTGTCCATCCTATGGCAATTGTGCACCCTGATGCTATTTTTGGCGAGGGGGTAATGAACAAATTCTCAACTTGCAGGGCGTCGTGATTGGGCCATTTTGTACTGTGGGTCCAGCAACAAAGCTTGGAAATCGTTGTCAGTTGCATCCTGGATGTCATATC
AGTGGAAACACAGAGTTAGGAGAAGGATGTGTGTTACTCACTGGTGCAGTTGTTGGTTCTGATCTACCAGGGCGTACTGTTATTGGAAACAACAATTTTATTGGGTACCATGCAGTTGTTGGAGTAAAATGTCAAGATCTGAAATACAGAGATGGTGATGACTGCTTCCTCTATATTGGAGACAACAATGACATCAGGGA
ACATGCTAGCATTCATCGATCATCCAAGCCAACGGATCAGACGGTCATTGGTGACAATAATCTTATTATGGGCTCCTGCCATATTGCTCATGATTGCAAACTGGGAAACCACAATATTTTTGCAAATGGTACACTATTGGGTGGCCATGTGGTGGTACAGAATCATGTTCATACTGGTGGAGCTGTTGCTGTTCACCAAT
TTTGCCACATAGGATCATTTGCATTTGTCGCTGGAGGCTCCGTGGTTACACATGATGTTCCTATGTACACGATGGTAGCTGGAGATCGAGCAGAACTTCGTGGATTGAATTTGGAGGGTCTTCGTCGTCGTGGATTTTCTGATTTGGAGGTCAAGAGCATTAGACGAGCCTATCAGAAGCTATTCATGTGCACTGATGTC
AATGCAGGAGGCTTAGAGGAACGTCTTGTTGAATTAGAGAAAAATGAAGAGCTAGCAAATGTGACAGCGGTAATTCTGATGGTAAAATCAGTTCGTGATTCTTTTAAGGAAAATCGCAGGGGTATTGTTAAGTTCAGGAATTGGACTCGCGACTGATGCATAGTTATAGTTTAGATACTATTTAATAGTTTAAGATATAA
TATCTGATTCCCAGAAGTGAAACCTATATTGTCCGATCCCATTATTGAAGGGGTAAAGTTACCTTAAAATTCATTTTTTGGCTGATTGCTAGTTATCATTATTTGTTTGGTCTCGAGTGATCAGCATATTATGCGGTTGTGATCCAAACAATAAAACTATCCTGAAAACATGTAAAACCTTGCATTATTTTTCAGGACAA
GCTTGATTCTTTGGACACTGCCTGTCTTTATAGTAATCCACTTCATTTGTCCCATAACATACATATGTATATTACATCTCTTTGCCAAATTGGCCTATATATTTTGGTTCCATGTAGACTGGAGACATTGGCTCATCAAATCTGGATGTTTAGTTAATGAACTGTTACAAATATTTCACTGCTGCATAATCATTTTCTGA
TGGATAGGTATTAGAGTAAAAGATATAAGAAAACCTTCTTGCATAACAAAAC
>TRINITY_DN117800_c1_g2_i6 from sample A1 / Example unspliced isoform:TGGTGCAGTTGTTGGTTCTGATCTACCAGGGCGTACTGTTATTGGAAACAACAATTTTATTGGGTACCATGCAGTTGTTGGAGTAAAATGTCAAGATCTGAAATACAGAGATGGTGATGACTGCTTCCTCTATATTGGAGACAACAATGACATCAGGGAACATGCTAGCATTCATCGATCATCCAAGCCAACGGATCAGA
CGGTAAAAAAGGGCTGATGCATTCTTTTCATGAAAATTCTGCAAATGCCTTTGAAGATTTGCTTGCAGTTGCATATTTGTAAATCTGTTTTTGTGTTTAAAGCTGTAAGGCCTCACACTGCAGACTCATCTTGGTAGGTCATTGGTGACAATAATCTTATTATGGGCTCCTGCCATATTGCTCATGATTGCAAACTGGGA
AACCACAATATTTTTGCAAATGGTACACTATTGGGTGGCCATGTGGTGGTACAGAATCATGTTCATACTGGTGGAGCTGTTGCTGTTCACCAATTTTGCCACATAGGATCATTTGCATTTGTCGCTGGAGGCTCCGTGgtaaagtcgagtcattgaatttcctgaaaatcatttttcttgagcttcttttcaaaattatc
atgaataccatttatcaattggaataaatgctgaaatggcattgttcaaaaccttcataataatgtgtgtcccatattttgttccaaagtttctcttaaactttgaattattctatgttattcaaatgtaatgcctatcttacttcttctttatatgccgtcacaatgtactcttgattacttacaggtttgttaatctt
tcttattgaaaataatgaacatattgcttgtaatgtagGTTACACATGATGTTCCTATGTACACGATGGTAGCTGGAGATCGAGCAGAACTTCGTGGATTGAATTTGGAGGGTCTTCGTCGTCGTGGATTTTCTGATTTGGAGGTCAAGAGCATTAGACGAGCCTATCAGAAGCTATTCATGTGCACTGATGTCAATGCA
GGAGGCTTAGAGGAACGTCTTGTTGAATTAGAGAAAAATGAAGAGCTAGCAAATGTGACAGCGGTAATTCTGATGGTAAAATCAGTTCGTGATTCTTTTAAGGAAAATCGCAGGGGTATTGTTAAGTTCAGGAATTGGACTCGCGACTGATGCATAGTTATAGTTTAGATACTATTTAATAGTTTAAGATATAATATCTG
ATTCCCAGAAGTGAAACCTATATTGTCCGATCCCATTATTGAAGGGGTAAAGTTACCTTAAAATTCATTTTTTGGCTGATTGCTAGTTATCATTATTTGTTTGGTCTCGAGTGATCAGCATATTATGCGGTTGTGATCCAAACAATAAAACTATCCTGAAAACATGTAAAACCTTGCATTATTTTTCAGGACAAGCTTGA
TTCTTTGGACACTGCCTGTCTTTATAGTAATCCACTTCATTTGTCCCATAACATACATATGTATATTACATCTCTTTGCCAAATTGGCCTATATATTTTGGTTCCATGTAGACTGGAGACATTGGCTCATCAAATCTGGATGTTTAGTTAATGAACTGTTACAAATATTTCACTGCTGCATAATCATTTTCTGATGGATA
GGTATTAGAGTAAAAGATATAAGAAAACCTTCTTGCATAACAAAAC