NA ----> NA
Intron 1 GTATGTAAAG ... TTTGAGACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 50 | 5 | 0 | 5 |
| A2 | 50 | 10 | 2 | 10 |
| A3 | 50 | 11 | 0 | 11 |
| A4 | 50 | 5 | 0 | 5 |
| A5 | -1 | 0 | 0 | 0 |
| A6 | 47.83 | 12 | 0 | 11 |
| A7 | 38.71 | 57 | 3 | 36 |
| A8 | 47.06 | 63 | 0 | 56 |
| A9 | 43.62 | 53 | 0 | 41 |
| A10 | 47.42 | 51 | 0 | 46 |
>TRINITY_DN43918_c0_g1_i8 from sample A7 / Example spliced isoformTGGAATCAAAGAAAAAGAAGAAAATAAAGAAAGTGAGACCTGCAACAGTGGATGATAATGCGGATGCAGAAAACAACAAGGACGTGCACTTAAGAGGGATGAAGAGTACGGGGGCTTTGGAATCAAAGAAAAAGAAGAAAATAAAGAAAGTGAGGCCTGCAGCAGTGGATGATAATGTGGATGCGGAAAACAACGAGGAT
GTGTGCTTAAGAGGGATGAAAAACCTGCAACAGTGGATGATAATGCGGATGCAGAAAACAACAAGGACGTGCACTTAAGAGGGATGAAGAGTACGGGGGCTTTGGAATCAAAGAAAAAATGGCTTCTTGATTACCACAGTAAAAGACCGGGATTGAAGGTTCTGCAAGAAGAAATTGATGTCTTTATGGTAGATCATGAA
GCTCAAGCAGAGAAGGAACGGAAAGAGAGAGAAGCAGCTGCTGCAGCTGAAGGATGGACAGTTGTTGTTCATCAAAAGGGAAGGAAGAAAAATGTAGACGCTGAGAGTGGAATTGCTGTTGGTTCTGTTGGACTAGCTGCTGCTCAGGCAAAAAACGCAAAAAAGAAGGCCAAGGAATCTGCTGTGACATTTTATAGGTT
CCAAAGGCGAGAGGCTCGCAGAAATGAGATTCTGGAGCTACAAAATAAATTCGAGGAAGATAAAAAGCGGATAGCACAGATGAGGGCAGCAAGAAAGTTTCGCCCTTACTGATATTTTTTGCAGACCATTTTATGCCATGTGCTATGTATACTGCATACCTCGTAGTTCAGAGCAAAAGCTAAAACAACTGGCAAGTGAA
GCTATTTAATACTGCACTTATTATCAAAACACAGGGTTTACAATTGATGTGGTGCAACGGTTAACTTTCCTAATTGACATTCTGATTATTATGTTCAAGTGTTTATATTTCCTTCCCAAATATTTTGGGTCGAGGTCATTTTGAAAGAACACTGATATTTCAATTGTATGGTCTTCGTGCTTTCCATCCTCGCTATTATT
CACAGCATCGAGATGTGCAGTGAATCTTATTTTCTTGGCTGTGTTATCCATATTAAGTAAAGAGACTCATCAGGCAGTTTCACCCGATCACTGATATTTCAATTATTTTTCATCATTGTGCTTATCATTCTTTCTTTTTTTTTTCACCGTATCCAGATGCACAGTGAATTTTATATTTTTGGCTGTATTATTAATCAAAG
AGACTCATCAGTCAATTAGGCCTAGCTCAGGTTGTTTATAGGAATGATTGTTATCCTCCCCACCCAGGTTCAATTCCTGTAAATGACACATTGA
>TRINITY_DN43918_c0_g1_i5 from sample A7 / Example unspliced isoform:TGGAATCAAAGAAAAAGAAGAAAATAAAGAAAGTGAGACCTGCAACAGTGGATGATAATGCGGATGCAGAAAACAACAAGGACGTGCACTTAAGAGGGATGAAGAGTACGGGGGCTTTGGAATCAAAGAAAAAGAAGAAAATAAAGAAAGTGAGGCCTGCAGCAGTGGATGATAATGTGGATGCGGAAAACAACGAGGAT
GTGTGCTTAAGAGGGATGAAAAACCTGCAACAGTGGATGATAATGCGGATGCAGAAAACAACAAGGACGTGCACTTAAGAGGGATGAAGAGTACGGGGGCTTTGGAATCAAAGAAAAgtatgtaaaggcatctaaggtacttatctgataagacttttgtgctatagtcaaagaataacattttgtttctttgagacagA
ATGGCTTCTTGATTACCACAGTAAAAGACCGGGATTGAAGGTTCTGCAAGAAGAAATTGATGTCTTTATGGTAGATCATGAAGCTCAAGCAGAGAAGGAACGGAAAGAGAGAGAAGCAGCTGCTGCAGCTGAAGGATGGACAGTTGTTGTTCATCAAAAGGGAAGGAAGAAAAATGTAGACGCTGAGAGTGGAATTGCTG
TTGGTTCTGTTGGACTAGCTGCTGCTCAGGCAAAAAACGCAAAAAAGAAGGCCAAGGAATCTGCTGTGACATTTTATAGGTTCCAAAGGCGAGAGGCTCGCAGAAATGAGATTCTGGAGCTACAAAATAAATTCGAGGAAGATAAAAAGCGGATAGCACAGATGAGGGCAGCAAGAAAGTTTCGCCCTTACTGATATTTT
TTGCAGACCATTTTATGCCATGTGCTATGTATACTGCATACCTCGTAGTTCAGAGCAAAAGCTAAAACAACTGGCAAGTGAAGCTATTTAATACTGCACTTATTATCAAAACACAGGGTTTACAATTGATGTGGTGCAACGGTTAACTTTCCTAATTGACATTCTGATTATTATGTTCAAGTGTTTATATTTCCTTCCCA
AATATTTTGGGTCGAGGTCATTTTGAAAGAACACTGATATTTCAATTGTATGGTCTTCGTGCTTTCCATCCTCGCTATTATTCACAGCATCGAGATGTGCAGTGAATCTTATTTTCTTGGCTGTGTTATCCATATTAAGTAAAGAGACTCATCAGGCAGTTTCACCCGATCACTGATATTTCAATTATTTTTCATCATTG
TGCTTATCATTCTTTCTTTTTTTTTTCACCGTATCCAGATGCACAGTGAATTTTATATTTTTGGCTGTATTATTAATCAAAGAGACTCATCAGTCAATTAGGCCTAGCTCAGGTTGTTTATAGGAATGATTGTTATCCTCCCCACCCAGGTTCAATTCCTGTAAATGACACATTGA
Intron 2 GTAAATGCAT ... CGGAAAACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 41.56 | 12.7 | 6 | 12 |
| A2 | 29.17 | 17 | 7 | 7 |
| A3 | 21.32 | 20.3 | 5 | 6 |
| A4 | 73.43 | 3.3 | 7 | 11 |
| A5 | 48.48 | 10.7 | 9 | 11 |
| A6 | 24.58 | 43 | 15 | 13 |
| A7 | 20.75 | 116.7 | 24 | 37 |
| A8 | 21.04 | 115 | 18 | 43 |
| A9 | 22.38 | 141.3 | 23 | 58 |
| A10 | 17.66 | 86.3 | 20 | 17 |
>TRINITY_DN43918_c0_g1_i10 from sample A7 / Example spliced isoformATATGTTATTCAAACCGCAATCCCACCTATTGCAAAAATACCGTCGAGGGTTGTGGAAGAAAACTTGTTCTGGGTTTAGGGTTTAAACAAAAACCACATTGAGCGCTTGAGCGCTTGCCCCGTTTCGAATACACAGAGAAGTATGGCACGTCCAGACGGTGTAAAAAAGAGGAAGAATAAGGAGAAGAGAGAACAAAATG
ACTTGGACAAACCTCACGACAGTTCTCTGAAACCAAAAAAAATGAAGAAAGGAAGATTGCATGAAAGGCAGGGGGATTTGGAATCAAAGAAAAAGAAGAAAATAAAGAAAGAGAGCCCTGCACCAGTGGATGAAAATGTGGATGAGGAAAACAACAAGGATGTGTGCTTAAGAGGGATGAAAAGTATGGGGGCTTTGGAA
TCAAAGAAAAAGAAGAAAGTAAAGAAAGCGAGACCTGCAGCAGTGGATGAGGAAAACAACAAGGATGTGAACTTAATAGGGATGAAAAGTATGGGGGCTTTGGAATCAAAGAAAAAGAAGAAAATAAAGAAAGTGAGACCTGCAACAGTGGATGATAATGCGGATGCAGAAAACAACAAGGACGTGCACTTAAGAGGGAT
GAAGAGTACGGGGGCTTTGGAATCAAAGAAAAGTATGTAAAGG
>TRINITY_DN43918_c0_g1_i1 from sample A7 / Example unspliced isoform:ATATGTTATTCAAACCGCAATCCCACCTATTGCAAAAATACCGTCGAGGGTTGTGGAAGAAAACTTGTTCTGGGTTTAGGGTTTAAACAAAAACCACATTGAGCGCTTGAGCGCTTGCCCCGTTTCGAATACACAGgtaaatgcattactactgcgctgtaagatgggaattttgttgataaatgcgaatctcagacagt
ttcagggtttttgatacgagaattgtttctgatattgcggaaaacagAGAAGTATGGCACGTCCAGACGGTGTAAAAAAGAGGAAGAATAAGGAGAAGAGAGAACAAAATGACTTGGACAAACCTCACGACAGTTCTCTGAAACCAAAAAAAATGAAGAAAGGAAGATTGCATGAAAGGCAGGGGGATTTGGAATCAAAG
AAAAAGAAGAAAATAAAGAAAGAGAGCCCTGCACCAGTGGATGAAAATGTGGATGAGGAAAACAACAAGGATGTGTGCTTAAGAGGGATGAAAAGTATGGGGGCTTTGGAATCAAAGAAAAAGAAGAAAGTAAAGAAAGCGAGACCTGCAGCAGTGGATGATAATGTGGATGAGGAAAACAACAAGGATGTGAACTTAAT
AGGGATGAAAAGTATGGGGGCTTTGGAATCAAAGAAAAAGAAGAAAATAAAGAAAGTGAGACCTGCAACAGTGGATGATAATGCGGATGCAGAAAACAACAAGGACGTGCACTTAAGAGGGATGAAGAGTACGGGGGCTTTGGAATCAAAGAAAAGTATGTAAAGG