sp|Q9LV37|MPK9_ARATH ----> Mitogen-activated protein kinase 9
Intron 1 GTGAGGACTG ... GCTGATACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 40 | 6 | 2 | 6 |
| A2 | 16.67 | 5 | 2 | 0 |
| A3 | 33.33 | 10 | 4 | 6 |
| A4 | 29.73 | 13 | 7 | 4 |
| A5 | 33.33 | 4 | 3 | 1 |
| A6 | 16.36 | 23 | 5 | 4 |
| A7 | 25.58 | 16 | 5 | 6 |
| A8 | 11.76 | 15 | 2 | 2 |
| A9 | 21.88 | 25 | 3 | 11 |
| A10 | 30 | 7 | 1 | 5 |
>TRINITY_DN120326_c2_g2_i11 from sample A1 / Example spliced isoformGGCAGCTAAAAACAAATAAAACAAGCAGAGCTCGAACACAGGGTTCGAACCCTGAACCTGACGAAGTTACACTCGGAGAAAAGAACACTTGCGTGTCTTCCGCGTGAAATCGGATTATTACTACTTCCGAGGACGCGGACGGGGAGAAAGAAAGGAGTTTAGGAGAGCCGGGGATCAATTTTCTCCGCGCATCGAAGACA
GAATTCGACTACATATGCACAGATCCAGGTTCGATTCGAATCCCCGCGGCTGCAAAGAGGATTCGTACTGAAATGCGAGCAGAAGAACAGGAGCATCATCACACATATGGGAGGGACGGTAGTGGATAGCTTCCGTCGTTGGTATCAGCGTCGCTGGAGTCATTCTTCGAGCGCTCACGAATCAGGAAAAGAGAAAGATA
CAGTTAATTCTTCTTCTTCTTCGTCAGTCTCCGCATTACCCGTGAAAACCACGGCGGTGGAGAGCCGTGGCTTGAAGCCCGTGCGCGTGCAGTTGAGAAGCAAAATGGCCGGACCTGATCGCTCCAGGAAAAGCTCGCTGGATACAGAATTCTTCACCGAATACGGTGAGGCAAACCGATACCAAATACAGGAGGTTGTT
GGCAAGGGAAGCTATGGCGTAGTAAGTTCTGCAATTGACACTCATACTGGTGAGAAAGTGGCAATTAAGAAGATTAATGATGTATTTGAACATGTATCTGATGCCACTCGCATTCTGAGAGAAATCAAGCTCCTTAGGTTGCTTCGCCATCCAGACATTGTTGAGATTAAGCACGTTATGCTTCCTCCATCTCGACGGGA
ATTCAAAGATATATATGTTGTATTTGAGTTGATGGAGTCCGATCTTCACCAAGTTATTAAAGCAAATGATGATCTTACGGCTGAACACTATCAGTTCTTTCTGTATCAGCTTCTTAGAGCTCTGAAGTACATTCATACAGCAAATGTATTTCATCGTGACTTGAAACCGAAAAATATTTTGGCAAATGCTGACTGCAAAC
TGAAAATATGTGACTTTGGGCTTGCTCGTGTCTCCTTCAATGATGCTCCATCCGCCATTTTCTGGACGGATTATGTGGCAACCAGGTGGTATCGAGCCCCTGAGCTTTGCGGTTCTTTCTTTACCAAGTACACTCCTGCCATTGATATCTGGAGCATAGGATGCATATTTGCTGAAATGCTCACGGGAAAGCCATTGTTT
CCTGGGAAGAATGTTGTGCATCAACTGGATATCATGACTGATTTGCTTGGCACTCCATCGGCAGAAACACTTGCTAGGATCCGCAATGAGAAGGCCAGAAGGTACTTGAGTAACATGCGGAAAAAGCAGCCAATACCCTTCTCACAGAAGTTCCCAAATGTAGATCCGCTTGCCCTACGTCTGCTTGAGCGTATGCTTGC
ATTTGATCCAAAGGACCGACCTTCGGCTGAGGAGGCATTAGCTGATCCATATTTCAATGGTTTGGCAAAAGTTGAGCGTGAACCTTCAACGCAGCCTATCTCAAAGCTGGAGTTTGAGTTTGAAAGGAGAAGATTAACAAAGGATGATGTGAGGGAGCTTATTTATCGAGAGATTTTAGAGTATCATCCTCAGATGCTAC
AGGAGTATTTATGTGGTGCCAACAATGCAAACTTTATGTATCCAAGTGCTGTAGATATGTTCAAGAGACAATTTGCTCATCTAGAGGAACACTATAGTAAAGGTGAAAACAGCACACCGCTTGGGAGGCAGCATGCTTCGTTACCAAGAGAGCGTGTCATTGAATTCAGAGAGACTTCTACAAAGCACACTAAGGATTCT
GAAAAACAACAAGAAACAATCACTACATCTGTAACTAAGGCTATCCTTCAAAGTCCACCAAGAACTCAGGGGGTGCCTGCACAACCAGGCGTTGTGATTGGTTCTGCGGTTTCACTAACTAATGGTGCAAGTAAAGCAGTTCCAGATCCACGGAACCTAGTGAAGAGTGCTAGCATCAGTGCTTCTACGTGCACAGTTGC
TGTGAATGCCTGCCAAAGAAGAAACTCCACAATGAAACCCGAGGATGAGAAAAAAGAAGAATTTAACAGTGAATCAAGTGCTGTTACATATAATACAGATTCAAGGGTTGCTGGTTTGACAAACAAGATTGCAGCAATGTCGAGTGGAGTGGCTCATTCATGAATATTTAATTTTGTGTTTAAATCATTCAGGGCAGTGG
TTACTAACCTCTAACCAATTTGGTTGCAAACTTGCAACATATTCCCAAGGGTCCTAAACCCAGCACAGATTCAATGGTAGCTGGCTTGGTAAAGAAGCTTACAGCCATACCTAGCGGGCTGCCTATTTTTCATGAATATGTTAATGGCCATCTAATTTTTATATTGTATCGATTGTAACCTGTTTTTGAATCTATTTAAC
TTTAAGTGGCTTCTTTTGTGCGATCAATAATATTTGTTCCGGTCAAGGAACCTAGGATTTATGCATCACCTTGTTTAAAATGACATTTGATGAGAATTCTACAGCATTATTTATGAAAGATTTTCCATGTGAAAATGACTCTAGAAAATTGGGCATGTCTAAATTTGATCCAATAC
>TRINITY_DN120326_c2_g2_i10 from sample A1 / Example unspliced isoform:CTTTCCAATAACATCTCCAGCATCTGCAGACATGACTAATATCAGATTAGCTTTAAATTTTGTGCAAGAAAGATGACATCCTTGTGTATGTCCAGTCCTAATGCAGCAAACTTCCTGTTAAATCTAGTTTTTCAAATATTCAGGCTATATGCCCTCTTATGATGCACAATGCTGGGCCTCATAGATTAAACATGTAAACT
GTTTAAAAGCAAGAGCATGAATGGCCCCTTTTATTACAGATAAAGCTTAGCTTGTAAGACTGAATCAAATGTTATCTGCTGATAATGATCTTATCATATTGAAAATCATCCAGATTTTTCATTGGGAAATTATCTTGGTTTGCTACATAGTACAAATGCTCTGAATCCTGATACTAATGGCATTCTTGTGATATTCCAGA
GCTCGCTGGATACAGAATTCTTCACCGAATACGGTGAGGCAAACCGATACCAAATACAGGAGGTTGTTGGCAAGGGAAGCTATGGCGTAGTAAGTTCTGCAATTGACACTCATACTGGTGAGAAAGTGGCAATTAAGAAGATTAATGATGTATTTGAACATGTATCTGATGCCACTCGCATTCTGAGAGAAATCAAGCTC
CTTAGGTTGCTTCGCCATCCAGACATTGTTGAGATTAAGCACGTTATGCTTCCTCCATCTCGACGGGAATTCAAAGATATATATGTTGTATTTGAGTTGATGGAGTCCGATCTTCACCAAGTTATTAAAGCAAATGATGATCTTACGGCTGAACACTATCAGTTCTTTCTGTATCAGCTTCTTAGAGCTCTGAAGTACAT
TCATACAGCAAATGTATTTCATCGTGACTTGAAACCGAAAAATATTTTGGCAAATGCTGACTGCAAACTGAAAATATGTGACTTTGGGCTTGCTCGTGTCTCCTTCAATGATGCTCCATCCGCCATTTTCTGGACGGATTATGTGGCAACCAGGTGGTATCGAGCCCCTGAGCTTTGCGGTTCTTTCTTTACCAAGTACA
CTCCTGCCATTGATATCTGGAGCATAGGATGCATATTTGCTGAAATGCTCACGGGAAAGCCATTGTTTCCTGGGAAGAATGTTGTGCATCAACTGGATATCATGACTGATTTGCTTGGCACTCCATCGGCAGAAACACTTGCTAGGATCCGCAATGAGAAGGCCAGAAGGTACTTGAGTAACATGCGGAAAAAGCAGCCA
ATACCCTTCTCACAGAAGTTCCCAAATGTAGATCCGCTTGCCCTACGTCTGCTTGAGCGTATGCTTGCATTTGATCCAAAGGACCGACCTTCGGCTGAGGAGGCATTAGCTGATCCATATTTCAATGGTTTGGCAAAAGTTGAGCGTGAACCTTCAACGCAGCCTATCTCAAAGCTGGAGTTTGAGTTTGAAAGGAGAAG
ATTAACAAAGGATGATGTGAGGGAGCTTATTTATCGAGAGATTTTAGAGTATCATCCTCAGATGCTACAGGAGTATTTATGTGGTGCCAACAATGCAAACTTTATGTATCCAAGTGCTGTAGATATGTTCAAGAGACAATTTGCTCATCTAGAGGAACACTATAGTAAAGGTGAAAACAGCACACCGCTTGGGAGGCAGC
ATGCTTCGTTACCAAGAGAGCGTGTCATTGAATTCAGAGAGACTTCTACAAAGCACACTAAGGATTCTGAAAAACAACAAGAAACAATCACTACATCTGTAACTAAGGCTATCCTTCAAAGTCCACCAAGAACTCAGGgtgaggactggagctttaacattggttttcctgtcttgtatttaatgcatcatgttgcatta
ttaagtgtgatcctaaaaataagcgattttatgactttttgctcaagggaaattaactctgtttacatatcatatacatatgtctttctatagtatgatgagatgttgctgatacagGGGTGCCTGCACAACCAGGCGTTGTGATTGGTTCTGCGGTTTCACTAACTAATGGTGCAAGTAAAGCAGTTCCAGATCCACGG
AACCTAGTGAAGAGTGCTAGCATCAGTGCTTCTACGTGCACAGTTGCTGTGAATGCCTGCCAAAGAAGAAACTCCACAATGAAACCCGAGGATGAGAAAAAAGAAGAATTTAACAGTGAATCAAGTGCTGTTACATATAATACAGATTCAAGGGTTGCTGGTTTGACAAACAAGATTGCAGCAATGTCGAGTGGAGTGGC
TCATTCATGAATATTTAATTTTGTGTTTAAATCATTCAGGGCAGTGGTTACTAACCTCTAACCAATTTGGTTGCAAACTTGCAACATATTCCCAAGGGTCCTAAACCCAGCACAGATTCAATGGTAGCTGGCTTGGTAAAGAAGCTTACAGCCATACCTAGCGGGCTGCCTATTTTTCATGAATATGTTAATGGCCATCT
AATTTTTATATTGTATCGATTGTAACCTGTTTTTGAATCTATTTAACTTTAAGTGGCTTCTTTTGTGCGATCAATAATATTTGTTCCGGTCAAGGAACCTAGGATTTATGCATCACCTTGTTTAAAATGACATTTGATGAGAATTCTACAGCATTATTTATGAAAGATTTTCCATGTGAAAATGACTCTAGAAAATTGGG
CATGTCTAAATTTGATCCAATAC
Intron 2 GTTGGCTCTC ... AAACTTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 29.41 | 30 | 17 | 8 |
| A2 | 12.82 | 17 | 4 | 1 |
| A3 | 11.11 | 8 | 2 | 0 |
| A4 | 44.44 | 10 | 9 | 7 |
| A5 | 42.86 | 6 | 6 | 3 |
| A6 | 20 | 18 | 5 | 4 |
| A7 | 21.21 | 13 | 4 | 3 |
| A8 | 30.43 | 8 | 4 | 3 |
| A9 | 6.25 | 15 | 1 | 1 |
| A10 | 33.33 | 3 | 0 | 3 |
>TRINITY_DN95085_c0_g1_i7 from sample A4 / Example spliced isoformGAGCATGAATGGCCCCTTTTATTACAGATAAAGCTTAGCTTGTAAGACTGAATCAAATGTTATCTGCTGATAATGATCTTATCATATTGAAAATCATCCAGATTTTTCATTGGGAAATTATCTTGGTTTGCTACATAGTACAAATGCTCTGAATCCTGATACTAATGGCATTCTTGTGATATTCCAGAGCTCGCTGGATA
CAGAATTCTTCACCGAATACGGTGAGGCAAACCGATACCAAATACAGGAGGTTGTTGGCAAGGGAAGCTATGGCGTAGTAAGTTCTGCAATTGACACTCATACTGGTGAGAAAGTGGCAATTAAGAAGATTAATGATGTATTTGAACATGTATCTGATGCCACTCGCATTCTGAGAGAAATCAAGCTCCTTAGGTTGCTT
CGCCATCCAGACATTGTTGAGATTAAGCACGTTATGCTTCCTCCATCTCGACGGGAATTCAAAGATATATATGTTGTATTTGAGTTGATGGAGTCCGATCTTCACCAAGTTATTAAAGCAAATGATGATCTTACGGCTGAACACTATCAGTTCTTTCTGTATCAGCTTCTTAGAGCTCTGAAGTACATTCATACAGCAAA
TGTATTTCATCGTGACTTGAAACCGAAAAATATTTTGGCAAATGCTGACTGCAAACTGAAAATATGTGACTTTGGGCTTGCTCGTGTCTCCTTCAATGATGCTCCATCCGCCATTTTCTGGACGGATTATGTGGCAACCAGGTGGTATCGAGCCCCTGAGCTTTGCGGTTCTTTCTTTACCAAGTACACTCCTGCCATTG
ATATCTGGAGCATAGGATGCATATTTGCTGAAATGCTCACGGGAAAGCCATTGTTTCCTGGGAAGAATGTTGTGCATCAACTGGATATCATGACTGATTTGCTTGGCACTCCATCGGCAGAAACACTTGCTAGGATCCGCAATGAGAAGGCCAGAAGGTACTTGAGTAACATGCGGAAAAAGCAGCCAATACCCTTCTCA
CAGAAGTTCCCAAATGTAGATCCGCTTGCCCTACGTCTGCTTGAGCGTATGCTTGCATTTGATCCAAAGGACCGACCTTCGGCTGAGGAGGCATTAGCTGATCCATATTTCAATGGTTTGGCAAAAGTTGAGCGTGAACCTTCAACGCAGCCTATCTCAAAGCTGGAGTTTGAGTTTGAAAGGAGAAGATTAACAAAGGA
TGATGTGAGGGAGCTTATTTATCGAGAGATTTTAGAGTATCATCCTCAGATGCTACAGGAGTATTTATGTGGTGCCAACAATGCAAACTTTATGTATCCAAGGTTTGCCCATTGATATCTTAATTTCGTTGTTCATTTTGTGGCGTTGAACTCTATTCACTGATTACTTTGTGAAGTTATATGCACTGAACAAACTCAAC
CAAGTTTATAAAGATACCAG
>TRINITY_DN95085_c0_g1_i6 from sample A4 / Example unspliced isoform:CCTGACGAAGTTACACTCGGAGAAAAGAACACTTGCGTGTCTTCCGCGTGAAATCGGATTATTACTACTTCCGAGGACGCGGACGGGGAGAAAGAAAGGAGTTTAGGAGAGCCGGGGATCAATTTTCTCCGCGCATCGAAGACAGAATTCGACTACATATGCACAGATCCAGGTTCGATTCGAATCCCCGCGGCTGCAAA
GAGGATTCGTACTGAAATGCGAGCAGAAGAACAGGAGCATCATCACACATATGGGAGGGACGGTAGTGGATAGCTTCCGTCGTTGGTATCAGCGTCGCTGGAGTCATTCTTCGAGCGCTCACGAATCAGGAAAAGAGAAAGATACAGTTAATTCTTCTTCTTCTTCGTCAGTCTCCGCATTACCCGTGAAAACCACGGCG
GTGGAGAGCCGTGGCTTGAAGCCCGTGCGCGTGCAGTTGAGAAGCAAAATGGCCGGACCTGATCGCTCCAGGAAAAGCTCGCTGGATACAGAATTCTTCACCGAATACGGTGAGGCAAACCGATACCAAATACAGGAGGTTGTTGGCAAGGGAAGCTATGGCGTAGTAAGTTCTGCAATTGACACTCATACTGGTGAGAA
AGTGGCAATTAAGAAGATTAATGATGTATTTGAACATGTATCTGATGCCACTCGCATTCTGAGAGAAATCAAGCTCCTTAGGTTGCTTCGCCATCCAGACATTGTTGAGATTAAGCACGTTATGCTTCCTCCATCTCGACGGGAATTCAAAGATATATATGTTGTATTTGAGTTGATGGAGTCCGATCTTCACCAAGTTA
TTAAAGCAAATGATGATCTTACGGCTGAACACTATCAGTTCTTTCTGTATCAGCTTCTTAGAGCTCTGAAGTACATTCATACAGCAAATGTATTTCATCGTGACTTGAAACCGAAAAATATTTTGGCAAATGCTGACTGCAAACTGAAAATATGTGACTTTGGGCTTGCTCGTGTCTCCTTCAATGATGCTCCATCCGCC
ATTTTCTGGACGGATTATGTGGCAACCAGGTGGTATCGAGCCCCTGAGCTTTGCGGTTCTTTCTTTACCAAGTACACTCCTGCCATTGATATCTGGAGCATAGGATGCATATTTGCTGAAATGCTCACGGGAAAGCCATTGTTTCCTGGGAAGAATGTTGTGCATCAACTGGATATCATGACTGATTTGCTTGGCACTCC
ATCGGCAGAAACACTTGCTAGGgttggctctctcttcttgctaatcgcatttgcagcaaggaagaatatttctggatttatctaaagagctacccaggcattcctcatggaggtttggcttgttagtgtgactcgttaccgacattttagtgataatggagtcagaaataatcttcttgtggtagctgttacaacctatg
aagcccatgtgacacatgttttacttccagcaagctgtgaagaaatagcacatgcaaacagtacacatgtccaaattgtgtttttttcctttataactctttttgattagtctatctttgtaaaactttcagATCCGCAATGAGAAGGCCAGAAGGTACTTGAGTAACATGCGGAAAAAGCAGCCAATACCCTTCTCACA
GAAGTTCCCAAATGTAGATCCGCTTGCCCTACGTCTGCTTGAGCGTATGCTTGCATTTGATCCAAAGGACCGACCTTCGGCTGAGGAGGCATTAGCTGATCCATATTTCAATGGTTTGGCAAAAGTTGAGCGTGAACCTTCAACGCAGCCTATCTCAAAGCTGGAGTTTGAGTTTGAAAGGAGAAGATTAACAAAGGATG
ATGTGAGGGAGCTTATTTATCGAGAGATTTTAGAGTATCATCCTCAGATGCTACAGGAGTATTTATGTGGTGCCAACAATGCAAACTTTATGTATCCAAGGTTTGCCCATTGATATCTTAATTTCGTTGTTCATTTTGTGGCGTTGAACTCTATTCACTGATTACTTTGTGAAGTTATATGCACTGAACAAACTCAACCA
AGTTTATAAAGATACCAG
Intron 3 GTCTGAAAAT ... TTTCTCACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 24.24 | 25 | 4 | 12 |
| A2 | 26.92 | 19 | 4 | 10 |
| A3 | 28.57 | 15 | 10 | 2 |
| A4 | 28.57 | 20 | 8 | 8 |
| A5 | 53.85 | 3 | 3 | 4 |
| A6 | 20.93 | 17 | 9 | 0 |
| A7 | 22.22 | 7 | 4 | 0 |
| A8 | 33.33 | 3 | 3 | 0 |
| A9 | 27.27 | 4 | 2 | 1 |
| A10 | 33.33 | 7 | 7 | 0 |
>TRINITY_DN99972_c0_g1_i10 from sample A5 / Example spliced isoformCGGGGAGAAAGAAAGGAGTTTAGGAGAGCCGGGGATCAATTTTCTCCGCGCATCGAAGACAGAATTCGACTACATATGCACAGATCCAGGTTCGATTCGAATCCCCGCGGCTGCAAAGAGGATTCGTACTGAAATGCGAGCAGAAGAACAGGAGCATCATCACACATATGGGAGGGACGGTAGTGGATAGCTTCCGTCGT
TGGTATCAGCGTCGCTGGAGTCATTCTTCGAGCGCTCACGAATCAGGAAAAGAGAAAGATACAGTTAATTCTTCTTCTTCTTCGTCAGTCTCCGCATTACCCGTGAAAACCACGGCGGTGGAGAGCCGTGGCTTGAAGCCCGTGCGCGTGCAGTTGAGAAGCAAAATGGCCGGACCTGATCGCTCCAGGAAAAGCTCGCT
GGATACAGAATTCTTCACCGAATACGGTGAGGCAAACCGATACCAAATACAGGAGGTTGTTGGCAAGGGAAGCTATGGCGTAGTAAGTTCTGCAATTGACACTCATACTGGTGAGAAAGTGGCAATTAAGAAGATTAATGATGTATTTGAACATGTATCTGATGCCACTCGCATTCTGAGAGAAATCAAGCTCCTTAGGT
TGCTTCGCCATCCAGACATTGTTGAGATTAAGCACGTTATGCTTCCTCCATCTCGACGGGAATTCAAAGATATATATGTTGTATTTGAGTTGATGGAGTCCGATCTTCACCAAGTTATTAAAGCAAATGATGATCTTACGGCTGAACACTATCAGTTCTTTCTGTATCAGCTTCTTAGAGCTCTGAAGTACATTCATACA
GCAAATGTATTTCATCGTGACTTGAAACCGAAAAATATTTTGGCAAATGCTGACTGCAAACTGAAAATATGTGACTTTGGGCTTGCTCGTGTCTCCTTCAATGATGCTCCATCCGCCATTTTCTGGACGGATTATGTGGCAACCAGGTGGTATCGAGCCCCTGAGCTTTGCGGTTCTTTCTTTACCAAGTACACTCCTGC
CATTGATATCTGGAGCATAGGATGCATATTTGCTGAAATGCTCACGGGAAAGCCATTGTTTCCTGGGAAGAATGTTGTGCATCAACTGGATATCATGACTGATTTGCTTGGCACTCCATCGGCAGAAACACTTGCTAGGGTTGGCTCTCTCTTCTTGCTAATCGCATTTGCAGCAAGGAAGAATATTTCTGGATTTATCT
AAAGAGCTACCCAGGCATTCCTCATGGAGGTTTGGCTTGTTAGTGTGACTCGTTACCGACATTTTAGTGATAATGGAGTCAGAAATAATCTTCTTGTGGTAGCTGTTACAACCTATGAAGCCCATGTGACACATGTTTTACTTCCAGCAAGCTGTGAAGAAAT
>TRINITY_DN99972_c0_g1_i3 from sample A5 / Example unspliced isoform:CGGGGAGAAAGAAAGGAGTTTAGGAGAGCCGGGGATCAATTTTCTCCGCGCATCGAAGACAGAATTCGACTACATATGCACAGATCCAGGTTCGATTCGAATCCCCGCGGCTGCAAAGAGGATTCGTACTGAAATGCGAGCAGAAGAACAGGAGCATCATCACACATATGGGAGGGACGGTAGTGGATAGCTTCCGTCGT
TGGTATCAGCGTCGCTGGAGTCATTCTTCGAGCGCTCACGAATCAGGAAAAGAGAAAGATACAGTTAATTCTTCTTCTTCTTCGTCAGTCTCCGCATTACCCGTGAAAACCACGGCGGTGGAGAGCCGTGGCTTGAAGCCCGTGCGCGTGCAGTTGAGAAGCAAAATGGCCGGACCTGATCGCTCCAGGAAAAGCTCGCT
GGATACAGAATTCTTCACCGAATACGGTGAGGCAAACCGATACCAAATACAGGAGGTTGTTGGCAAGGGAAGCTATGGCGTAGTAAGTTCTGCAATTGACACTCATACTGGTGAGAAAGTGGCAATTAAGAAGATTAATGATGTATTTGAACATGTATCTGATGCCACTCGCATTCTGAGAGAAATCAAGCTCCTTAGGT
TGCTTCGCCATCCAGACATTGTTGAGATTAAGCACGTTATGCTTCCTCCATCTCGACGGGAATTCAAAGATATATATGTTGTATTTGAGTTGATGGAGTCCGATCTTCACCAAGTTATTAAAGCAAATGATGATCTTACGGCTGAACACTATCAGTTCTTTCTGTATCAGCTTCTTAGAGCTCTGAAGTACATTCATACA
GgtctgaaaatctctcctgcaagatctgcatccaatcctagcacaaatttttttcttagggcttttgtctattggaagcttcattgttttccttgatgaaatgttttaatggttttctcacagCAAATGTATTTCATCGTGACTTGAAACCGAAAAATATTTTGGCAAATGCTGACTGCAAACTGAAAATATGTGACTTT
GGGCTTGCTCGTGTCTCCTTCAATGATGCTCCATCCGCCATTTTCTGGACGGATTATGTGGCAACCAGGTGGTATCGAGCCCCTGAGCTTTGCGGTTCTTTCTTTACCAAGTACACTCCTGCCATTGATATCTGGAGCATAGGATGCATATTTGCTGAAATGCTCACGGGAAAGCCATTGTTTCCTGGGAAGAATGTTGT
GCATCAACTGGATATCATGACTGATTTGCTTGGCACTCCATCGGCAGAAACACTTGCTAGGATCCGCAATGAGAAGGCCAGAAGGTACTTGAGTAACATGCGGAAAAAGCAGCCAATACCCTTCTCACAGAAGTTCCCAAATGTAGATCCGCTTGCCCTACGTCTGCTTGAGCGTATGCTTGCATTTGATCCAAAGGACC
GACCTTCGGCTGAGGAGGCATTAGCTGATCCATATTTCAATGGTTTGGCAAAAGTTGAGCGTGAACCTTCAACGCAGCCTATCTCAAAGCTGGAGTTTGAGTTTGAAAGGAGAAGATTAACAAAGGATGATGTGAGGGAGCTTATTTATCGAGAGGTAAACATATAATTAAGTTTCTACTGTTGCTTATAATTAAAATGA
CAACGTTGTTTAAATGTCTTATCCTCTTGATTTACTTGGGAGAAATCTAAAACTGAATGCCAACTATCACTTTGCTTTTCCTTTTCTTCTTATATTGGACAGATTTTAGAGTATCATCCTCAGATGCTACAGGAGTATTTATGTGGTGCCAACAATGCAAACTTTATGTATCCAAGTGCTGTAGATATGTTCAAGAGACA
ATTTGCTCATCTAGAGGAACACTATAGTAAAGGTGAAAACAGCACACCGCTTGGGAGGCAGCATGCTTCGTTACCAAGAGAGCGTGTCATTGAATTCAGAGAGACTTCTACAAAGCACACTAAGGATTCTGAAAAACAACAAGAAACAATCACTACATCTGTAACTAAGGCTATCCTTCAAAGTCCACCAAGAACTCAGG
GGGTGCCTGCACAACCAGGCGTTGTGATTGGTTCTGCGGTTTCACTAACTAATGGTGCAAGTAAAGCAGTTCCAGATCCACGGAACCTAGTGAAGAGTGCTAGCATCAGTGCTTCTACGTGCACAGTTGCTGTGAATGCCTGCCAAAGAAGAAACTCCACAATGAAACCCGAGGATGAGAAAAAAGAAGAATTTAACAGT
G
Intron 4 GTAAACATAT ... TATTGGACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 18.18 | 27 | 6 | 6 |
| A2 | 41.94 | 9 | 5 | 8 |
| A3 | 16.67 | 15 | 4 | 2 |
| A4 | 23.08 | 5 | 2 | 1 |
| A5 | 37.5 | 5 | 2 | 4 |
| A6 | 35.71 | 9 | 4 | 6 |
| A7 | 13.04 | 10 | 1 | 2 |
| A8 | 20 | 4 | 0 | 2 |
| A9 | 58.62 | 6 | 4 | 13 |
| A10 | 50 | 4 | 0 | 8 |
>TRINITY_DN99972_c0_g1_i4 from sample A5 / Example spliced isoformCGGGGAGAAAGAAAGGAGTTTAGGAGAGCCGGGGATCAATTTTCTCCGCGCATCGAAGACAGAATTCGACTACATATGCACAGATCCAGGTTCGATTCGAATCCCCGCGGCTGCAAAGAGGATTCGTACTGAAATGCGAGCAGAAGAACAGGAGCATCATCACACATATGGGAGGGACGGTAGTGGATAGCTTCCGTCGT
TGGTATCAGCGTCGCTGGAGTCATTCTTCGAGCGCTCACGAATCAGGAAAAGAGAAAGATACAGTTAATTCTTCTTCTTCTTCGTCAGTCTCCGCATTACCCGTGAAAACCACGGCGGTGGAGAGCCGTGGCTTGAAGCCCGTGCGCGTGCAGTTGAGAAGCAAAATGGCCGGACCTGATCGCTCCAGGAAAAGCTCGCT
GGATACAGAATTCTTCACCGAATACGGTGAGGCAAACCGATACCAAATACAGGAGGTTGTTGGCAAGGGAAGCTATGGCGTAGTAAGTTCTGCAATTGACACTCATACTGGTGAGAAAGTGGCAATTAAGAAGATTAATGATGTATTTGAACATGTATCTGATGCCACTCGCATTCTGAGAGAAATCAAGCTCCTTAGGT
TGCTTCGCCATCCAGACATTGTTGAGATTAAGCACGTTATGCTTCCTCCATCTCGACGGGAATTCAAAGATATATATGTTGTATTTGAGTTGATGGAGTCCGATCTTCACCAAGTTATTAAAGCAAATGATGATCTTACGGCTGAACACTATCAGTTCTTTCTGTATCAGCTTCTTAGAGCTCTGAAGTACATTCATACA
GCAAATGTATTTCATCGTGACTTGAAACCGAAAAATATTTTGGCAAATGCTGACTGCAAACTGAAAATATGTGACTTTGGGCTTGCTCGTGTCTCCTTCAATGATGCTCCATCCGCCATTTTCTGGACGGATTATGTGGCAACCAGGTGGTATCGAGCCCCTGAGCTTTGCGGTTCTTTCTTTACCAAGTACACTCCTGC
CATTGATATCTGGAGCATAGGATGCATATTTGCTGAAATGCTCACGGGAAAGCCATTGTTTCCTGGGAAGAATGTTGTGCATCAACTGGATATCATGACTGATTTGCTTGGCACTCCATCGGCAGAAACACTTGCTAGGATCCGCAATGAGAAGGCCAGAAGGTACTTGAGTAACATGCGGAAAAAGCAGCCAATACCCT
TCTCACAGAAGTTCCCAAATGTAGATCCGCTTGCCCTACGTCTGCTTGAGCGTATGCTTGCATTTGATCCAAAGGACCGACCTTCGGCTGAGGAGGCATTAGCTGATCCATATTTCAATGGTTTGGCAAAAGTTGAGCGTGAACCTTCAACGCAGCCTATCTCAAAGCTGGAGTTTGAGTTTGAAAGGAGAAGATTAACA
AAGGATGATGTGAGGGAGCTTATTTATCGAGAGATTTTAGAGTATCATCCTCAGATGCTACAGGAGTATTTATGTGGTGCCAACAATGCAAACTTTATGTATCCAAGGTTTGCCCATTGATATCTTAATTTCGTTGTTCATTTTGTGGCGTTGAACTCT
>TRINITY_DN99972_c0_g1_i3 from sample A5 / Example unspliced isoform:CGGGGAGAAAGAAAGGAGTTTAGGAGAGCCGGGGATCAATTTTCTCCGCGCATCGAAGACAGAATTCGACTACATATGCACAGATCCAGGTTCGATTCGAATCCCCGCGGCTGCAAAGAGGATTCGTACTGAAATGCGAGCAGAAGAACAGGAGCATCATCACACATATGGGAGGGACGGTAGTGGATAGCTTCCGTCGT
TGGTATCAGCGTCGCTGGAGTCATTCTTCGAGCGCTCACGAATCAGGAAAAGAGAAAGATACAGTTAATTCTTCTTCTTCTTCGTCAGTCTCCGCATTACCCGTGAAAACCACGGCGGTGGAGAGCCGTGGCTTGAAGCCCGTGCGCGTGCAGTTGAGAAGCAAAATGGCCGGACCTGATCGCTCCAGGAAAAGCTCGCT
GGATACAGAATTCTTCACCGAATACGGTGAGGCAAACCGATACCAAATACAGGAGGTTGTTGGCAAGGGAAGCTATGGCGTAGTAAGTTCTGCAATTGACACTCATACTGGTGAGAAAGTGGCAATTAAGAAGATTAATGATGTATTTGAACATGTATCTGATGCCACTCGCATTCTGAGAGAAATCAAGCTCCTTAGGT
TGCTTCGCCATCCAGACATTGTTGAGATTAAGCACGTTATGCTTCCTCCATCTCGACGGGAATTCAAAGATATATATGTTGTATTTGAGTTGATGGAGTCCGATCTTCACCAAGTTATTAAAGCAAATGATGATCTTACGGCTGAACACTATCAGTTCTTTCTGTATCAGCTTCTTAGAGCTCTGAAGTACATTCATACA
GGTCTGAAAATCTCTCCTGCAAGATCTGCATCCAATCCTAGCACAAATTTTTTTCTTAGGGCTTTTGTCTATTGGAAGCTTCATTGTTTTCCTTGATGAAATGTTTTAATGGTTTTCTCACAGCAAATGTATTTCATCGTGACTTGAAACCGAAAAATATTTTGGCAAATGCTGACTGCAAACTGAAAATATGTGACTTT
GGGCTTGCTCGTGTCTCCTTCAATGATGCTCCATCCGCCATTTTCTGGACGGATTATGTGGCAACCAGGTGGTATCGAGCCCCTGAGCTTTGCGGTTCTTTCTTTACCAAGTACACTCCTGCCATTGATATCTGGAGCATAGGATGCATATTTGCTGAAATGCTCACGGGAAAGCCATTGTTTCCTGGGAAGAATGTTGT
GCATCAACTGGATATCATGACTGATTTGCTTGGCACTCCATCGGCAGAAACACTTGCTAGGATCCGCAATGAGAAGGCCAGAAGGTACTTGAGTAACATGCGGAAAAAGCAGCCAATACCCTTCTCACAGAAGTTCCCAAATGTAGATCCGCTTGCCCTACGTCTGCTTGAGCGTATGCTTGCATTTGATCCAAAGGACC
GACCTTCGGCTGAGGAGGCATTAGCTGATCCATATTTCAATGGTTTGGCAAAAGTTGAGCGTGAACCTTCAACGCAGCCTATCTCAAAGCTGGAGTTTGAGTTTGAAAGGAGAAGATTAACAAAGGATGATGTGAGGGAGCTTATTTATCGAGAGgtaaacatataattaagtttctactgttgcttataattaaaatga
caacgttgtttaaatgtcttatcctcttgatttacttgggagaaatctaaaactgaatgccaactatcactttgcttttccttttcttcttatattggacagATTTTAGAGTATCATCCTCAGATGCTACAGGAGTATTTATGTGGTGCCAACAATGCAAACTTTATGTATCCAAGTGCTGTAGATATGTTCAAGAGACA
ATTTGCTCATCTAGAGGAACACTATAGTAAAGGTGAAAACAGCACACCGCTTGGGAGGCAGCATGCTTCGTTACCAAGAGAGCGTGTCATTGAATTCAGAGAGACTTCTACAAAGCACACTAAGGATTCTGAAAAACAACAAGAAACAATCACTACATCTGTAACTAAGGCTATCCTTCAAAGTCCACCAAGAACTCAGG
GGGTGCCTGCACAACCAGGCGTTGTGATTGGTTCTGCGGTTTCACTAACTAATGGTGCAAGTAAAGCAGTTCCAGATCCACGGAACCTAGTGAAGAGTGCTAGCATCAGTGCTTCTACGTGCACAGTTGCTGTGAATGCCTGCCAAAGAAGAAACTCCACAATGAAACCCGAGGATGAGAAAAAAGAAGAATTTAACAGT
G