sp|Q6ZI44|SAPK6_ORYSJ ----> Serine/threonine-protein kinase SAPK6
Intron 1 GTAAAGAGGA ... TCCCTTACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 1.51 | 9.8 | 0.3 | 0.2 |
| A2 | 3.7 | 13.8 | 3 | 0.7 |
| A3 | 33.25 | 6.8 | 0.7 | 3.5 |
| A4 | 27.97 | 10.3 | 3 | 4 |
| A5 | 42.86 | 8 | 2.7 | 6 |
| A6 | 6.16 | 39.8 | 6.7 | 2.7 |
| A7 | 5.71 | 83.3 | 13 | 5.3 |
| A8 | 12.2 | 26.8 | 7 | 3.8 |
| A9 | 12.65 | 73.5 | 10 | 10.8 |
| A10 | 8.6 | 55.2 | 9.3 | 5.3 |
>TRINITY_DN95827_c0_g1_i5 from sample A4 / Example spliced isoformGCTGGCTTTCAGCGACTCGCCTGCTCGAAAATGGATCGGTTCGAGATAGTGAAAGACGTCGGCTCTGCCAATTTTGGAGCGGCGAGGCTTATGCGCAACAAGAGGACGAAGGAGATTGTCGCCATCAAGTACATCGAGAGAGGCCGCATGATAGACGAGAATGTTGCGCGCAAGATCGTACAGCACCGGTCGCTGAGGCA
CCCTAACATAATTCGTTTGAAGGAGGCTTTCCTGACTCCCACTCACCTGGCCATAGTTTTGGAGTACGCCGCCGGAGGGCAGCTTTTCGACCGTATTCGTAACGCTGGCCGCTTTAACGAGAACGAAGCGAGATCTTTGTTCCAACAGCTCATATCGGGAGTCAGCTATTGCCATGCCATGAACGTCTGCCATGGCGATC
TTAAGCTGGAAAATACGTTACTAGACGGCTCTCCCGTTCCCCGGCTCAAGATTTGCGACTTCGAATACTCAAAGTCTCTTGTGCTTCATTCTGGACCAAATGCGACCGTCAGAACGCCTGCTTATATTGCCCCTGAGGTTTTGTCCTGTAAAGAATATGACGGTAAGGTTGCAGATGTCTGGTCTTGCGGAGCTACTCTG
TATGCTATGTTAGTGGGCGCGTACCCTTTCGAAGATCGAGGCGACCGTAAAAATTTCAGGAAAGCGATACAGGTAGGTGTCTCTGTTTTGCGACTTTGTCATCGATGTTTAGAGGTCTCAGGTTCGAAACCGCAGAGACGCACACTTGATGTTAAGAGGTCTCAGGTTCGAAACCGCAGAGACGAACACTTAATGAGTAA
ATGTATACGGTGGAAAAATCAGTTTTTGGTAACGAATTAAATAATAATTAATGTTGGTGTG
>TRINITY_DN95827_c0_g1_i2 from sample A4 / Example unspliced isoform:GCTGGCTTTCAGCGACTCGCCTGCTCGAAAATGGATCGGTTCGAGATAGTGAAAGACGTCGGCTCTGCCAATTTTGGAGCGGCGAGGCTTATGCGCAACAAGAGGACGAAGGAGATTGTCGCCATCAAGTACATCGAGAGAGGCCGCATGATAGACGAGAATGTTGCGCGCAAGATCGTACAGCACCGGTCGCTGAGGCA
CCCTAACATAATTCGTTTGAAGGAGgtaaagaggatcgaacccttgccgtagtcatgcatttgttaaataaaggaatgagcggatgatcggctgctttgatttgttttgctttttgtttcttttcccttacagGCTTTCCTGACTCCCACTCACCTGGCCATAGTTTTGGAGTACGCCGCCGGAGGGCAGCTTTTCGACC
GTATTCGTAACGCTGGCCGCTTTAACGAGAACGAAGTAGGTTTTAGCTTTCTTTAATTCTTGTTAGCTGAGGGCGGGATTCCGTCTAATAAACGGCATCGCATGTGACGCCAGGCGAGATCTTTG
Intron 2 GCTTTCCTGA ... CTGGCCATAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 45.53 | 15 | 9.8 | 15.5 |
| A2 | 64.93 | 7 | 13.8 | 12.3 |
| A3 | 57.86 | 6 | 6.8 | 9.8 |
| A4 | 51.98 | 9 | 10.5 | 9 |
| A5 | 39.48 | 9 | 8 | 3.8 |
| A6 | 64.01 | 20 | 39.8 | 31.5 |
| A7 | 63.98 | 42 | 83 | 66.3 |
| A8 | 44.68 | 28 | 26.8 | 18.5 |
| A9 | 62.7 | 37 | 73.3 | 51.3 |
| A10 | 58.34 | 36 | 54.8 | 46.3 |
>TRINITY_DN38682_c0_g1_i11 from sample A9 / Example spliced isoformCTGGCTGGCTTTCAGCGACTCGCCTGCTCGAAAATGGATCGGTTCGAGATAGTGAAAGACGTCGGCTCTGCCAATTTTGGAGCGGCGAGGCTTATGCGCAACAAGAGGACGAAGGAGATTGTCGCCATCAAGTACATCGAGAGAGGCCGCATGATAGACGAGAATGTTGCGCGCAAGATCGTACAGCACCGGTCGCTGAG
GCACCCTAACATAATTCGTTTGAAGGAGTTTTGGAGTACGCCGCCGGAGGGCAGCTTTTCGACCGTATTCGTAACGCTGGCCGCTTTAACGAGAACGAAGCGAGATCTTTGTTCCAACAGCTCATATCGGGAGTCAGCTATTGCCATGCCATGAACGTCTGCCATGGCGATCTTAAGCTGGAAAATACGTTACTAGACGG
CTCTCCCGTTCCCCGGCTCAAGATTTGCGACTTCGAATACTCAAAGTCTCTTGTGCTTCATTCTGGACCAAATGCGACCGTCAGAACGCCTGCTTATATTGCCCCTGAGGTTTTGTCCTGTAAAGAATATGACGGTAAGGTTGCAGATGTCTGGTCTTGCGGAGCTACTCTGTATGCTATGTTAGTGGGCGCGTACCCTT
TCGAAGATCGAGGCGACCGTAAAAATTTCAGGAAAGCGATACAGCTTATAATGAGCGCACAATACACGATTCCAGATTCTGTACACGTGTCTCTCGAGTGTAAGCAGCTTCTTGCCCGTATTTTTGTAGCCAATCCCACCAAGCGAATTACTATCAAAGAATTAAGGAACCATCCGTGGTTCTTGAAGAGCTTGCCCAGG
GAACTCATGGAATGGGCGGATGCGGCCTACCCACATGATGATAATGCGAACAGCCCATTCCAGCCTGTCGATGAAATATTGAAAATACTGGAAGAGGCGAAAAAACCTCTACCAACGCTCAACAGTCTAAAAGCTTTCTTGCACGAGGACGATGAAGAGCACCAAATGGGGTGTATATTTGGCACATTAAATCAAGAGGA
TCAGAATATCTAAAAGAAGAGGGGATGATGTGGATTACCCAATACAGAGCATCCAGGCATCAGTTGCTAACAAATAGTTCCAAACGAGTTCAACTCAATGTCAGTGGGACTACCAATGTCAATCAGATAGATCCGAGATTGTAGGGATATGTTGAGTATGGCCAAAGAAATTCCGGTGGGAACCCAAAACTCTAAACACA
AGGTTGAGCTGATGGATGTGGCAGTTTTTTTGTTTACTTTTTGGATGGATTCTTGTAGTTGTTGTTGCTAAGGTGAAACAGAGGACTGGGTACCAGTTATGTAATTCAGTGTGCTTTCAGTTGTTGAATATTAAAATAAAGGCCTGTGAGCCTACTAGAGTATATGTGTAGTCTCTAGCCTCAATGCCTTCAGTTGCCTA
AGGATATTATAGTTTTATAATTCGTTTTTATCTCTAATATTTCCCTACATTGGAGCGA
>TRINITY_DN38682_c0_g1_i2 from sample A9 / Example unspliced isoform:CTGGCTGGCTTTCAGCGACTCGCCTGCTCGAAAATGGATCGGTTCGAGATAGTGAAAGACGTCGGCTCTGCCAATTTTGGAGCGGCGAGGCTTATGCGCAACAAGAGGACGAAGGAGATTGTCGCCATCAAGTACATCGAGAGAGGCCGCATGATAGACGAGAATGTTGCGCGCAAGATCGTACAGCACCGGTCGCTGAG
GCACCCTAACATAATTCGTTTGAAGGAGgctttcctgactcccactcacctggccatagTTTTGGAGTACGCCGCCGGAGGGCAGCTTTTCGACCGTATTCGTAACGCTGGCCGCTTTAACGAGAACGAAGTAGGTTTTAGCTTTCTTTAATTCTTGTTAGCTGAGGGCGGGATTCCGTCTAATAAACGGCATCGCATGT
GACGCCAGGCGAGATCTTTGTTCCAACAGCTCATATCGGGAGTCAGCTATTGCCATGCCATGAACGTCTGCCATGGCGATCTTAAGCTGGAAAATACGTTACTAGACGGCTCTCCCGTTCCCCGGCTCAAGATTTGCGACTTCGAATACTCAAAGTCTCTTGTGCTTCATTCTGGACCAAATGCGACCGTCAGAACGCCT
GCTTATATTGCCCCTGAGGTTTTGTCCTGTAAAGAATATGACGGTAAGGTTGCAGATGTCTGGTCTTGCGGAGCTACTCTGTATGCTATGTTAGTGGGCGCGTACCCTTTCGAAGATCGAGGCGACCGTAAAAATTTCAGGAAAGCGATACAGCTTATAATGAGCGCACAATACACGATTCCAGATTCTGTACACGTGTC
TCTCGAGTGTAAGCAGCTTCTTGCCCGTATTTTTGTAGCCAATCCCACCAAGCGAATTACTATCAAAGAATTAAGGAACCATCCGTGGTTCTTGAAGAGCTTGCCCAGGGAACTCATGGAATGGGCGGATGCGGCCTACCCACATGATGATAATGCGAACAGCCCATTCCAGCCTGTCGATGAAATATTGAAAATACTGG
AAGAGGCGAAAAAACCTCTACCAACGCTCAACAGTCTAAAAGCTTTCTTGCACGAGGACGATGAAGAGCACCAAATGGGGTGTATATTTGGCACATTAAATCAAGAGGATCAGAATATCTAAAAGAAGAGGGGATGATGTGGATTACCCAATACAGAGCATCCAGGCATCAGTTGCTAACAAATAGTTCCAAACGAGTTC
AACTCAATGTCAGTGGGACTACCAATGTCAATCAGATAGATCCGAGATTGTAGGGATATGTTGAGTATGGCCAAAGAAATTCCGGTGGGAACCCAAAACTCTAAACACAAGGTTGAGCTGATGGATGTGGCAGTTTTTTTGTTTACTTTTTGGATGGATTCTTGTAGTTGTTGTTGCTAAGGTGAAACAGAGGACTGGGT
ACCAGTTATGTAATTCAGTGTGCTTTCAGTTGTTGAATATTAAAATAAAGGCCTGTGAGCCTACTAGAGTATATGTGTAGTCTCTAGCCTCAATGCCTTCAGTTGCCTAAGGATATTATAGTTTTATAATTCGTTTTTATCTCTAATATTTCCCTACATTGGAGCGA
Intron 3 GTAGGTGTCT ... GACATGTTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 41.39 | 7.8 | 8 | 3 |
| A2 | 20.83 | 19 | 3 | 7 |
| A3 | 21.88 | 25 | 10 | 4 |
| A4 | 50 | 10 | 14 | 6 |
| A5 | 20 | 4 | 2 | 0 |
| A6 | 12.73 | 48 | 10 | 4 |
| A7 | 21.83 | 77 | 32 | 11 |
| A8 | 24.53 | 40 | 14 | 12 |
| A9 | 25.55 | 51 | 24 | 11 |
| A10 | 25.25 | 37 | 20 | 5 |
>TRINITY_DN38682_c0_g1_i10 from sample A9 / Example spliced isoformCTGGCTGGCTTTCAGCGACTCGCCTGCTCGAAAATGGATCGGTTCGAGATAGTGAAAGACGTCGGCTCTGCCAATTTTGGAGCGGCGAGGCTTATGCGCAACAAGAGGACGAAGGAGATTGTCGCCATCAAGTACATCGAGAGAGGCCGCATGATAGACGAGAATGTTGCGCGCAAGATCGTACAGCACCGGTCGCTGAG
GCACCCTAACATAATTCGTTTGAAGGAGGCTTTCCTGACTCCCACTCACCTGGCCATAGTTTTGGAGTACGCCGCCGGAGGGCAGCTTTTCGACCGTATTCGTAACGCTGGCCGCTTTAACGAGAACGAAGCGAGATCTTTGTTCCAACAGCTCATATCGGGAGTCAGCTATTGCCATGCCATGAACGTCTGCCATGGCG
ATCTTAAGCTGGAAAATACGTTACTAGACGGCTCTCCCGTTCCCCGGCTCAAGATTTGCGACTTCGAATACTCAAAGTCTCTTGTGCTTCATTCTGGACCAAATGCGACCGTCAGAACGCCTGCTTATATTGCCCCTGAGGTTTTGTCCTGTAAAGAATATGACGGTAAGGTTGCAGATGTCTGGTCTTGCGGAGCTACT
CTGTATGCTATGTTAGTGGGCGCGTACCCTTTCGAAGATCGAGGCGACCGTAAAAATTTCAGGAAAGCGATACAGCTTATAATGAGCGCACAATACACGATTCCAGATTCTGTACACGTGTCTCTCGAGTGTAAGCAGCTTCTTGCCCGTATTTTTGTAGCCAATCCCACCAAGCGAATTACTATCAAAGAATTAAGGAA
CCATCCGTGGTTCTTGAAGAGCTTGCCCAGGGAACTCATGGAATGGGCGGATGCGGCCTACCCACATGATGATAATGCGAACAGCCCATTCCAGCCTGTCGATGAAATATTGAAAATACTGGAAGAGGCGAAAAAACCTCTACCAACGCTCAACAGTCTAAAAGCTTTCTTGCACGAGGACGATGAAGAGCACCAAATGG
GGTGTATATTTGGCACATTAAATCAAGAGGATCAGAATATCTAAAAGAAGAGGGGATGATGTGGATTACCCAATACAGAGCATCCAGGCATCAGTTGCTAACAAATAGTTCCAAACGAGTTCAACTCAATGTCAGTGGGACTACCAATGTCAATCAGATAGATCCGAGATTGTAGGGATATGTTGAGTATGGCCAAAGAA
ATTCCGGTGGGAACCCAAAACTCTAAACACAAGGTTGAGCTGATGGATGTGGCAGTTTTTTTGTTTACTTTTTGGATGGATTCTTGTAGTTGTTGTTGCTAAGGTGAAACAGAGGACTGGGTACCAGTTATGTAATTCAGTGTGCTTTCAGTTGTTGAATATTAAAATAAAGGCCTGTGAGCCTACTAGAGTATATGTGT
AGTCTCTAGCCTCAATGCCTTCAGTTGCCTAAGGATATTATAGTTTTATAATTCGTTTTTATCTCTAATATTTCCCTACATTGGAGCGA
>TRINITY_DN38682_c0_g1_i1 from sample A9 / Example unspliced isoform:CTGGCTGGCTTTCAGCGACTCGCCTGCTCGAAAATGGATCGGTTCGAGATAGTGAAAGACGTCGGCTCTGCCAATTTTGGAGCGGCGAGGCTTATGCGCAACAAGAGGACGAAGGAGATTGTCGCCATCAAGTACATCGAGAGAGGCCGCATGATAGACGAGAATGTTGCGCGCAAGATCGTACAGCACCGGTCGCTGAG
GCACCCTAACATAATTCGTTTGAAGGAGGCTTTCCTGACTCCCACTCACCTGGCCATAGTTTTGGAGTACGCCGCCGGAGGGCAGCTTTTCGACCGTATTCGTAACGCTGGCCGCTTTAACGAGAACGAAGCGAGATCTTTGTTCCAACAGCTCATATCGGGAGTCAGCTATTGCCATGCCATGAACGTCTGCCATGGCG
ATCTTAAGCTGGAAAATACGTTACTAGACGGCTCTCCCGTTCCCCGGCTCAAGATTTGCGACTTCGAATACTCAAAGTCTCTTGTGCTTCATTCTGGACCAAATGCGACCGTCAGAACGCCTGCTTATATTGCCCCTGAGGTTTTGTCCTGTAAAGAATATGACGGTAAGGTTGCAGATGTCTGGTCTTGCGGAGCTACT
CTGTATGCTATGTTAGTGGGCGCGTACCCTTTCGAAGATCGAGGCGACCGTAAAAATTTCAGGAAAGCGATACAGgtaggtgtctctgttttgcgactttgtcatcgatgtttagaggtctcaggttcgaaaccgcagagacgcacacttgatgttaagaggtctcaggttcgaaaccgcagagacgaacacttaatgag
taaatgtatacggtggaaaaatcagtttttggtaacgaattaaataataattaatgttggtgtgacatgttagCTTATAATGAGCGCACAATACACGATTCCAGATTCTGTACACGTGTCTCTCGAGTGTAAGCAGCTTCTTGCCCGTATTTTTGTAGCCAATCCCACCAAGGTAGTTTTTCGTTTTTAAAATTTGTGTT
TTTGTTTTTTCGGGTTTATATTTTTCTTAACGATAACTTTATTGAATGATGGCAAACAAAGACTCCTATCAAAGGGAACCATAGCTTTTCGGTTTATTTTTTCTACGATTATATTTTTCGTAATGATGTTTATTGAATTTGATGGCATACAGCGAATTACTATCAAAGAATTAAGGAACCATCCGTGGTTCTTGAAGAGC
TTGCCCAGGGAACTCATGGAATGGGCGGATGCGGCCTACCCACATGATGATAATGCGAACAGCCCATTCCAGCCTGTCGATGAAATATTGAAAATACTGGAAGAGGCGAAAAAACCTCTACCAACGCTCAACAGTCTAAAAGCTTTCTTGCACGAGGACGATGAAGAGCACCAAATGGGGTAAGAATAAGAACATGAAAA
TACAACCAAACTATAGATTTCCAAATTTTGATGTTTCCACCCTTGTGTCCCACAAAACCCTACTCAAACCTGCAAGTCACTTGCCCAGACCCATGATGCCCTACACAGAGTCAATGAGTCAATGTTTGGGAAAAATAATTGTCTTCTAAACATTTTCTTCCAGTAAAAATGGGTTCACTCAGTGACAACCAGAGAAGGAC
AGCTCCATGTTACAGTGTTCTAACTATTGTCTTATTTTCTCACAATGTTAAAAGTACTATATGTACAACTAGCATCGCGATTTTGCTCAACTAATATGAACTTCCAGAATGCTAGTTGTACAAGTCAGTAATGCTTTTAGAATTCCAATGTATGTAAGAACAAGTCAAAATGCTTCCCAATATTCAAGATTCTCAATTAT
GGTGTCTAAGTGTTGGTAATAGAAGTGGTAAATAAAAAGTGAAGTGTTGGTAATAGAAGTGCTAAATAAAAAGTGAACCTTTTTTTTAAGTGGGGAAATGTCGATACTTGTTATTCCGAAGAATTAAGATATGGTCAAAATTATATAGTTAATACATAGGACTAAATAAGAGCATCATGTCACTTACTAAAATTGAACCT
GGTCAAAATTATATAGTCAATACATAGGACTGAACAAGAGCATCATATC
Intron 4 GTAGTTTTTC ... TGGCATACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 17.95 | 16 | 0 | 7 |
| A2 | 25 | 3 | 1 | 1 |
| A3 | 18.75 | 13 | 4 | 2 |
| A4 | 28.57 | 10 | 4 | 4 |
| A5 | 0 | 4 | 0 | 0 |
| A6 | 8.64 | 37 | 1 | 6 |
| A7 | 17.65 | 77 | 5 | 28 |
| A8 | 24.82 | 53 | 14 | 21 |
| A9 | 14.71 | 58 | 4 | 16 |
| A10 | 29.52 | 37 | 12 | 19 |
>TRINITY_DN38682_c0_g1_i10 from sample A9 / Example spliced isoformCTGGCTGGCTTTCAGCGACTCGCCTGCTCGAAAATGGATCGGTTCGAGATAGTGAAAGACGTCGGCTCTGCCAATTTTGGAGCGGCGAGGCTTATGCGCAACAAGAGGACGAAGGAGATTGTCGCCATCAAGTACATCGAGAGAGGCCGCATGATAGACGAGAATGTTGCGCGCAAGATCGTACAGCACCGGTCGCTGAG
GCACCCTAACATAATTCGTTTGAAGGAGGCTTTCCTGACTCCCACTCACCTGGCCATAGTTTTGGAGTACGCCGCCGGAGGGCAGCTTTTCGACCGTATTCGTAACGCTGGCCGCTTTAACGAGAACGAAGCGAGATCTTTGTTCCAACAGCTCATATCGGGAGTCAGCTATTGCCATGCCATGAACGTCTGCCATGGCG
ATCTTAAGCTGGAAAATACGTTACTAGACGGCTCTCCCGTTCCCCGGCTCAAGATTTGCGACTTCGAATACTCAAAGTCTCTTGTGCTTCATTCTGGACCAAATGCGACCGTCAGAACGCCTGCTTATATTGCCCCTGAGGTTTTGTCCTGTAAAGAATATGACGGTAAGGTTGCAGATGTCTGGTCTTGCGGAGCTACT
CTGTATGCTATGTTAGTGGGCGCGTACCCTTTCGAAGATCGAGGCGACCGTAAAAATTTCAGGAAAGCGATACAGCTTATAATGAGCGCACAATACACGATTCCAGATTCTGTACACGTGTCTCTCGAGTGTAAGCAGCTTCTTGCCCGTATTTTTGTAGCCAATCCCACCAAGCGAATTACTATCAAAGAATTAAGGAA
CCATCCGTGGTTCTTGAAGAGCTTGCCCAGGGAACTCATGGAATGGGCGGATGCGGCCTACCCACATGATGATAATGCGAACAGCCCATTCCAGCCTGTCGATGAAATATTGAAAATACTGGAAGAGGCGAAAAAACCTCTACCAACGCTCAACAGTCTAAAAGCTTTCTTGCACGAGGACGATGAAGAGCACCAAATGG
GGTGTATATTTGGCACATTAAATCAAGAGGATCAGAATATCTAAAAGAAGAGGGGATGATGTGGATTACCCAATACAGAGCATCCAGGCATCAGTTGCTAACAAATAGTTCCAAACGAGTTCAACTCAATGTCAGTGGGACTACCAATGTCAATCAGATAGATCCGAGATTGTAGGGATATGTTGAGTATGGCCAAAGAA
ATTCCGGTGGGAACCCAAAACTCTAAACACAAGGTTGAGCTGATGGATGTGGCAGTTTTTTTGTTTACTTTTTGGATGGATTCTTGTAGTTGTTGTTGCTAAGGTGAAACAGAGGACTGGGTACCAGTTATGTAATTCAGTGTGCTTTCAGTTGTTGAATATTAAAATAAAGGCCTGTGAGCCTACTAGAGTATATGTGT
AGTCTCTAGCCTCAATGCCTTCAGTTGCCTAAGGATATTATAGTTTTATAATTCGTTTTTATCTCTAATATTTCCCTACATTGGAGCGA
>TRINITY_DN38682_c0_g1_i12 from sample A9 / Example unspliced isoform:CATAATTCGTTTGAAGGAGGTAAAGAGGATCGAACCCTTGCCGTAGTCATGCATTTGTTAAATAAAGGAATGAGCGGATGATCGGCTGCTTTGATTTGTTTTGCTTTTTGTTTCTTTTCCCTTACAGGCTTTCCTGACTCCCACTCACCTGGCCATAGTTTTGGAGTACGCCGCCGGAGGGCAGCTTTTCGACCGTATTC
GTAACGCTGGCCGCTTTAACGAGAACGAAGTAGGTTTTAGCTTTCTTTAATTCTTGTTAGCTGAGGGCGGGATTCCGTCTAATAAACGGCATCGCATGTGACGCCAGGCGAGATCTTTGTTCCAACAGCTCATATCGGGAGTCAGCTATTGCCATGCCATGAACGTCTGCCATGGCGATCTTAAGCTGGAAAATACGTTA
CTAGACGGCTCTCCCGTTCCCCGGCTCAAGATTTGCGACTTCGAATACTCAAAGTCTCTTGTGCTTCATTCTGGACCAAATGCGACCGTCAGAACGCCTGCTTATATTGCCCCTGAGGTTTTGTCCTGTAAAGAATATGACGGTAAGGTTGCAGATGTCTGGTCTTGCGGAGCTACTCTGTATGCTATGTTAGTGGGCGC
GTACCCTTTCGAAGATCGAGGCGACCGTAAAAATTTCAGGAAAGCGATACAGGTAGGTGTCTCTGTTTTGCGACTTTGTCATCGATGTTTAGAGGTCTCAGGTTCGAAACCGCAGAGACGCACACTTGATGTTAAGAGGTCTCAGGTTCGAAACCGCAGAGACGAACACTTAATGAGTAAATGTATACGGTGGAAAAATC
AGTTTTTGGTAACGAATTAAATAATAATTAATGTTGGTGTGACATGTTAGCTTATAATGAGCGCACAATACACGATTCCAGATTCTGTACACGTGTCTCTCGAGTGTAAGCAGCTTCTTGCCCGTATTTTTGTAGCCAATCCCACCAAGgtagtttttcgtttttaaaatttgtgtttttgttttttcgggtttatattt
ttcttaacgataactttattgaatgatggcaaacaaagactcctatcaaagggaaccatagcttttcggtttattttttctacgattatatttttcgtaatgatgtttattgaatttgatggcatacagCGAATTACTATCAAAGAATTAAGGAACCATCCGTGGTTCTTGAAGAGCTTGCCCAGGGAACTCATGGAATG
GGCGGATGCGGCCTACCCACATGATGATAATGCGAACAGCCCATTCCAGCCTGTCGATGAAATATTGAAAATACTGGAAGAGGCGAAAAAACCTCTACCAACGCTCAACAGTCTAAAAGCTTTCTTGCACGAGGACGATGAAGAGCACCAAATGGGGTAAGAATAAGAACATGAAAATACAACCAAACTATAGATTTCCA
AATTTTGATGTTTCCACCCTTGTGTCCCACAAAACCCTACTCAAACCTGCAAGTCACTTGCCCAGACCCATGATGCCCTACACAGAGTCAATGAGTCAATGTTTGGGAAAAATAATTGTCTTCTAAACATTTTCTTCCAGTAAAAATGGGTTCACTCAGTGACAACCAGAGAAGGACAGCTCCATGTTACAGTGTTCTAA
CTATTGTCTTATTTTCTCACAATGTTAAAAGTACTATATGTACAACTAGCATCGCGATTTTGCTCAACTAATATGAACTTCCAGAATGCTAGTTGTACAAGTCAGTAATGCTTTTAGAATTCCAATGTATGTAAGAACAAGTCAAAATGCTTCCCAATATTCAAGATTCTCAATTATGGTGTCTAAGTGTTGGTAATAGA
AGTGGTAAATAAAAAGTGAAGTGTTGGTAATAGAAGTGCTAAATAAAAAGTGAACCTTTTTTTTAAGTGGGGAAATGTCGATACTTGTTATTCCGAAGAATTAAGATATGGTCAAAATTATATAGTTAATACATAGGACTAAATAAGAGCATCATGTCACTTACTAAAATTGAACCTGGTCAAAATTATATAGTCAATAC
ATAGGACTGAACAAGAGCATCATATC
Intron 5 GTAGGGATCG ... ACTTTTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 33.33 | 10 | 0 | 5 |
| A2 | 60 | 4 | 1 | 6 |
| A3 | 42.31 | 15 | 0 | 11 |
| A4 | 18.18 | 9 | 2 | 2 |
| A5 | 12.5 | 7 | 0 | 1 |
| A6 | 30 | 21 | 0 | 9 |
| A7 | 24.24 | 50 | 0 | 16 |
| A8 | 20 | 24 | 0 | 6 |
| A9 | 17.86 | 23 | 0 | 5 |
| A10 | 20 | 36 | 0 | 9 |
>TRINITY_DN95827_c0_g1_i5 from sample A4 / Example spliced isoformGCTGGCTTTCAGCGACTCGCCTGCTCGAAAATGGATCGGTTCGAGATAGTGAAAGACGTCGGCTCTGCCAATTTTGGAGCGGCGAGGCTTATGCGCAACAAGAGGACGAAGGAGATTGTCGCCATCAAGTACATCGAGAGAGGCCGCATGATAGACGAGAATGTTGCGCGCAAGATCGTACAGCACCGGTCGCTGAGGCA
CCCTAACATAATTCGTTTGAAGGAGGCTTTCCTGACTCCCACTCACCTGGCCATAGTTTTGGAGTACGCCGCCGGAGGGCAGCTTTTCGACCGTATTCGTAACGCTGGCCGCTTTAACGAGAACGAAGCGAGATCTTTGTTCCAACAGCTCATATCGGGAGTCAGCTATTGCCATGCCATGAACGTCTGCCATGGCGATC
TTAAGCTGGAAAATACGTTACTAGACGGCTCTCCCGTTCCCCGGCTCAAGATTTGCGACTTCGAATACTCAAAGTCTCTTGTGCTTCATTCTGGACCAAATGCGACCGTCAGAACGCCTGCTTATATTGCCCCTGAGGTTTTGTCCTGTAAAGAATATGACGGTAAGGTTGCAGATGTCTGGTCTTGCGGAGCTACTCTG
TATGCTATGTTAGTGGGCGCGTACCCTTTCGAAGATCGAGGCGACCGTAAAAATTTCAGGAAAGCGATACAGGTAGGTGTCTCTGTTTTGCGACTTTGTCATCGATGTTTAGAGGTCTCAGGTTCGAAACCGCAGAGACGCACACTTGATGTTAAGAGGTCTCAGGTTCGAAACCGCAGAGACGAACACTTAATGAGTAA
ATGTATACGGTGGAAAAATCAGTTTTTGGTAACGAATTAAATAATAATTAATGTTGGTGTG
>TRINITY_DN95827_c0_g1_i1 from sample A4 / Example unspliced isoform:TATGACGGTAAGgtagggatcgatcccttccctttctcctatttaaaaaacattcatagacgcatttcaattttacacagtctattgtgtgccgttactttttcagGTTGCAGATGTCTGGTCTTGCGGAGCTACTCTGTATGCTATGTTAGTGGGCGCGTACCCTTTCGAAGATCGAGGCGACCGTAAAAATTTCAGGA
AAGCGATACAGCTTATAATGAGCGCACAATACACGATTCCAGATTCTGTACACGTGTCTCTCGAGTGTAAGCAGCTTCTTGCCCGTATTTTTGTAGCCAATCCCACCAAGCGAATTACTATCAAAGAATTAAGGAACCATCCGTGGTTCTTGAAGAGCTTGCCCAGGGAACTCATGGAATGGGCGGATGCGGCCTACCCA
CATGATGATAATGCGAACAGCCCATTCCAGCCTGTCGATGAAATATTGAAAATACTGGAAGAGGCGAAAAAACCTCTACCAACGCTCAACAGTCTAAAAGCTTTCTTGCACGAGGACGATGAAGAGCACCAAATGGGGTAAGAATAAGAACATGAAAATACAACCAAACTATAGATTTCCAAATTTTGATGTTTCCACCC
TTGTGTCCCACAAAACCCTACTCAAACCTGCAAGTCACTTGCCCAGACCCATGATGCCCTACACAGAGC
Intron 6 GTAGGTTTTA ... GTGACGCCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 39.38 | 10.5 | 7.9 | 5.8 |
| A2 | 27.39 | 16.3 | 1.5 | 11.4 |
| A3 | 31.69 | 15.5 | 6.6 | 8 |
| A4 | 44.44 | 5 | 6 | 2 |
| A5 | 20.28 | 7 | 1 | 2.6 |
| A6 | 34.04 | 16.8 | 6.4 | 11 |
| A7 | 30.01 | 51.5 | 24.4 | 19.6 |
| A8 | 38.47 | 31 | 14.3 | 26.5 |
| A9 | 37.9 | 27.8 | 18.6 | 14.3 |
| A10 | 31.22 | 41.3 | 14.5 | 23.6 |
>TRINITY_DN95827_c0_g1_i5 from sample A4 / Example spliced isoformGCTGGCTTTCAGCGACTCGCCTGCTCGAAAATGGATCGGTTCGAGATAGTGAAAGACGTCGGCTCTGCCAATTTTGGAGCGGCGAGGCTTATGCGCAACAAGAGGACGAAGGAGATTGTCGCCATCAAGTACATCGAGAGAGGCCGCATGATAGACGAGAATGTTGCGCGCAAGATCGTACAGCACCGGTCGCTGAGGCA
CCCTAACATAATTCGTTTGAAGGAGGCTTTCCTGACTCCCACTCACCTGGCCATAGTTTTGGAGTACGCCGCCGGAGGGCAGCTTTTCGACCGTATTCGTAACGCTGGCCGCTTTAACGAGAACGAAGCGAGATCTTTGTTCCAACAGCTCATATCGGGAGTCAGCTATTGCCATGCCATGAACGTCTGCCATGGCGATC
TTAAGCTGGAAAATACGTTACTAGACGGCTCTCCCGTTCCCCGGCTCAAGATTTGCGACTTCGAATACTCAAAGTCTCTTGTGCTTCATTCTGGACCAAATGCGACCGTCAGAACGCCTGCTTATATTGCCCCTGAGGTTTTGTCCTGTAAAGAATATGACGGTAAGGTTGCAGATGTCTGGTCTTGCGGAGCTACTCTG
TATGCTATGTTAGTGGGCGCGTACCCTTTCGAAGATCGAGGCGACCGTAAAAATTTCAGGAAAGCGATACAGGTAGGTGTCTCTGTTTTGCGACTTTGTCATCGATGTTTAGAGGTCTCAGGTTCGAAACCGCAGAGACGCACACTTGATGTTAAGAGGTCTCAGGTTCGAAACCGCAGAGACGAACACTTAATGAGTAA
ATGTATACGGTGGAAAAATCAGTTTTTGGTAACGAATTAAATAATAATTAATGTTGGTGTG
>TRINITY_DN95827_c0_g1_i2 from sample A4 / Example unspliced isoform:GCTGGCTTTCAGCGACTCGCCTGCTCGAAAATGGATCGGTTCGAGATAGTGAAAGACGTCGGCTCTGCCAATTTTGGAGCGGCGAGGCTTATGCGCAACAAGAGGACGAAGGAGATTGTCGCCATCAAGTACATCGAGAGAGGCCGCATGATAGACGAGAATGTTGCGCGCAAGATCGTACAGCACCGGTCGCTGAGGCA
CCCTAACATAATTCGTTTGAAGGAGGTAAAGAGGATCGAACCCTTGCCGTAGTCATGCATTTGTTAAATAAAGGAATGAGCGGATGATCGGCTGCTTTGATTTGTTTTGCTTTTTGTTTCTTTTCCCTTACAGGCTTTCCTGACTCCCACTCACCTGGCCATAGTTTTGGAGTACGCCGCCGGAGGGCAGCTTTTCGACC
GTATTCGTAACGCTGGCCGCTTTAACGAGAACGAAgtaggttttagctttctttaattcttgttagctgagggcgggattccgtctaataaacggcatcgcatgtgacgccagGCGAGATCTTTG
Intron 7 GTAAAGAGGA ... CTGGCCATAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 16.67 | 15 | 0 | 3 |
| A2 | 0 | 7 | 0 | 0 |
| A3 | 53.85 | 6 | 0 | 7 |
| A4 | 35.71 | 9 | 1 | 5 |
| A5 | 43.75 | 9 | 0 | 7 |
| A6 | 9.09 | 20 | 0 | 2 |
| A7 | 17.65 | 42 | 1 | 9 |
| A8 | 17.65 | 28 | 2 | 6 |
| A9 | 24.49 | 37 | 0 | 12 |
| A10 | 18.18 | 36 | 0 | 8 |
>TRINITY_DN38682_c0_g1_i11 from sample A9 / Example spliced isoformCTGGCTGGCTTTCAGCGACTCGCCTGCTCGAAAATGGATCGGTTCGAGATAGTGAAAGACGTCGGCTCTGCCAATTTTGGAGCGGCGAGGCTTATGCGCAACAAGAGGACGAAGGAGATTGTCGCCATCAAGTACATCGAGAGAGGCCGCATGATAGACGAGAATGTTGCGCGCAAGATCGTACAGCACCGGTCGCTGAG
GCACCCTAACATAATTCGTTTGAAGGAGTTTTGGAGTACGCCGCCGGAGGGCAGCTTTTCGACCGTATTCGTAACGCTGGCCGCTTTAACGAGAACGAAGCGAGATCTTTGTTCCAACAGCTCATATCGGGAGTCAGCTATTGCCATGCCATGAACGTCTGCCATGGCGATCTTAAGCTGGAAAATACGTTACTAGACGG
CTCTCCCGTTCCCCGGCTCAAGATTTGCGACTTCGAATACTCAAAGTCTCTTGTGCTTCATTCTGGACCAAATGCGACCGTCAGAACGCCTGCTTATATTGCCCCTGAGGTTTTGTCCTGTAAAGAATATGACGGTAAGGTTGCAGATGTCTGGTCTTGCGGAGCTACTCTGTATGCTATGTTAGTGGGCGCGTACCCTT
TCGAAGATCGAGGCGACCGTAAAAATTTCAGGAAAGCGATACAGCTTATAATGAGCGCACAATACACGATTCCAGATTCTGTACACGTGTCTCTCGAGTGTAAGCAGCTTCTTGCCCGTATTTTTGTAGCCAATCCCACCAAGCGAATTACTATCAAAGAATTAAGGAACCATCCGTGGTTCTTGAAGAGCTTGCCCAGG
GAACTCATGGAATGGGCGGATGCGGCCTACCCACATGATGATAATGCGAACAGCCCATTCCAGCCTGTCGATGAAATATTGAAAATACTGGAAGAGGCGAAAAAACCTCTACCAACGCTCAACAGTCTAAAAGCTTTCTTGCACGAGGACGATGAAGAGCACCAAATGGGGTGTATATTTGGCACATTAAATCAAGAGGA
TCAGAATATCTAAAAGAAGAGGGGATGATGTGGATTACCCAATACAGAGCATCCAGGCATCAGTTGCTAACAAATAGTTCCAAACGAGTTCAACTCAATGTCAGTGGGACTACCAATGTCAATCAGATAGATCCGAGATTGTAGGGATATGTTGAGTATGGCCAAAGAAATTCCGGTGGGAACCCAAAACTCTAAACACA
AGGTTGAGCTGATGGATGTGGCAGTTTTTTTGTTTACTTTTTGGATGGATTCTTGTAGTTGTTGTTGCTAAGGTGAAACAGAGGACTGGGTACCAGTTATGTAATTCAGTGTGCTTTCAGTTGTTGAATATTAAAATAAAGGCCTGTGAGCCTACTAGAGTATATGTGTAGTCTCTAGCCTCAATGCCTTCAGTTGCCTA
AGGATATTATAGTTTTATAATTCGTTTTTATCTCTAATATTTCCCTACATTGGAGCGA
>TRINITY_DN38682_c0_g1_i12 from sample A9 / Example unspliced isoform:CATAATTCGTTTGAAGGAGgtaaagaggatcgaacccttgccgtagtcatgcatttgttaaataaaggaatgagcggatgatcggctgctttgatttgttttgctttttgtttcttttcccttacaggctttcctgactcccactcacctggccatagTTTTGGAGTACGCCGCCGGAGGGCAGCTTTTCGACCGTATTC
GTAACGCTGGCCGCTTTAACGAGAACGAAGTAGGTTTTAGCTTTCTTTAATTCTTGTTAGCTGAGGGCGGGATTCCGTCTAATAAACGGCATCGCATGTGACGCCAGGCGAGATCTTTGTTCCAACAGCTCATATCGGGAGTCAGCTATTGCCATGCCATGAACGTCTGCCATGGCGATCTTAAGCTGGAAAATACGTTA
CTAGACGGCTCTCCCGTTCCCCGGCTCAAGATTTGCGACTTCGAATACTCAAAGTCTCTTGTGCTTCATTCTGGACCAAATGCGACCGTCAGAACGCCTGCTTATATTGCCCCTGAGGTTTTGTCCTGTAAAGAATATGACGGTAAGGTTGCAGATGTCTGGTCTTGCGGAGCTACTCTGTATGCTATGTTAGTGGGCGC
GTACCCTTTCGAAGATCGAGGCGACCGTAAAAATTTCAGGAAAGCGATACAGGTAGGTGTCTCTGTTTTGCGACTTTGTCATCGATGTTTAGAGGTCTCAGGTTCGAAACCGCAGAGACGCACACTTGATGTTAAGAGGTCTCAGGTTCGAAACCGCAGAGACGAACACTTAATGAGTAAATGTATACGGTGGAAAAATC
AGTTTTTGGTAACGAATTAAATAATAATTAATGTTGGTGTGACATGTTAGCTTATAATGAGCGCACAATACACGATTCCAGATTCTGTACACGTGTCTCTCGAGTGTAAGCAGCTTCTTGCCCGTATTTTTGTAGCCAATCCCACCAAGGTAGTTTTTCGTTTTTAAAATTTGTGTTTTTGTTTTTTCGGGTTTATATTT
TTCTTAACGATAACTTTATTGAATGATGGCAAACAAAGACTCCTATCAAAGGGAACCATAGCTTTTCGGTTTATTTTTTCTACGATTATATTTTTCGTAATGATGTTTATTGAATTTGATGGCATACAGCGAATTACTATCAAAGAATTAAGGAACCATCCGTGGTTCTTGAAGAGCTTGCCCAGGGAACTCATGGAATG
GGCGGATGCGGCCTACCCACATGATGATAATGCGAACAGCCCATTCCAGCCTGTCGATGAAATATTGAAAATACTGGAAGAGGCGAAAAAACCTCTACCAACGCTCAACAGTCTAAAAGCTTTCTTGCACGAGGACGATGAAGAGCACCAAATGGGGTAAGAATAAGAACATGAAAATACAACCAAACTATAGATTTCCA
AATTTTGATGTTTCCACCCTTGTGTCCCACAAAACCCTACTCAAACCTGCAAGTCACTTGCCCAGACCCATGATGCCCTACACAGAGTCAATGAGTCAATGTTTGGGAAAAATAATTGTCTTCTAAACATTTTCTTCCAGTAAAAATGGGTTCACTCAGTGACAACCAGAGAAGGACAGCTCCATGTTACAGTGTTCTAA
CTATTGTCTTATTTTCTCACAATGTTAAAAGTACTATATGTACAACTAGCATCGCGATTTTGCTCAACTAATATGAACTTCCAGAATGCTAGTTGTACAAGTCAGTAATGCTTTTAGAATTCCAATGTATGTAAGAACAAGTCAAAATGCTTCCCAATATTCAAGATTCTCAATTATGGTGTCTAAGTGTTGGTAATAGA
AGTGGTAAATAAAAAGTGAAGTGTTGGTAATAGAAGTGCTAAATAAAAAGTGAACCTTTTTTTTAAGTGGGGAAATGTCGATACTTGTTATTCCGAAGAATTAAGATATGGTCAAAATTATATAGTTAATACATAGGACTAAATAAGAGCATCATGTCACTTACTAAAATTGAACCTGGTCAAAATTATATAGTCAATAC
ATAGGACTGAACAAGAGCATCATATC