sp|Q0J6H8|CYL3_ORYSJ ----> Cyclase-like protein 3
Intron 1 GTGACTGGGA ... CAGATCTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 52.78 | 17 | 9 | 19 |
| A2 | 37.5 | 5 | 16 | 3 |
| A3 | 53.57 | 13 | 4 | 15 |
| A4 | 42.86 | 12 | 9 | 9 |
| A5 | 60 | 6 | 6 | 9 |
| A6 | 51.09 | 67 | 8 | 70 |
| A7 | 53.42 | 34 | 6 | 39 |
| A8 | 52.63 | 54 | 8 | 60 |
| A9 | 50.86 | 57 | 9 | 59 |
| A10 | 52.54 | 28 | 10 | 31 |
>TRINITY_DN44420_c1_g3_i2 from sample A8 / Example spliced isoformTGGGCACTGGTGGAGGAGATTCGTGGTATTTGTGGAGAGGGTCGACTCCCTCATTGGGCAAATCTGTGGACCTTGGAGGAGGCCAATCCCATTTCTTGTGGATTCGAGCTGAGAGATGGTTAGAGGGTTTCAGAAGGGGCCGACCCCTTTGGATGTTGATTCGCGGTCTGTGGAGAAGTGCCGAAGTACGTGCAGGGAGG
GTCGTGAACTTGGAAGAGTCGTGAGGCTAGTGTGGAGGGTCGGGTGCCCAAAGGAGGAATCCTTGAGTCTTTGACGCTAGTGTGGAGGGTCGCAAGTTTGGAAGAGGAAGCCGTGAAGCGTTATTGATGAGGAGGTGGACGCGTGGTCTTTAGAAGGGTGTTGAGAGCACCAAAGGGGCAAATCATGAGAATTGAAGGAG
GTCGCGAGAAGTCGTCATCATCAGTTGAAAACCAAATCCGTCACAGTGGGCCAAAATTGTCCTTGCTTGGGCGAAATTAATTGCTCAATATCGATTATTGCTTGGGCAAATTCAGTCGTGGAAGTCGCATTGTTGAAGTGGCCGAATTCAGCAATTTAAAGGGAGGCCGTGGGTATAGCAGCAACCAAATTTAATTACTA
AGGGGCGTTCACATTCCATCATTGTCGATTTCATAATTGGTGAAATCGATTTTCTTGAGGCCGAATTAAATTGTTGTGAGCCGAAATTTGGTTGAAGAGGGCCAAGATTATTGTGGGGTTGAATTTCATGGAAAATTCAGGGAGGCCGTGTTTGTGAGGGCCGATTTCTCTTGGGAAAGGTTAAGCTCCAATTTTGAAGG
CCGATCTCTGTTGGAAGGCAAATTCTTGAGACCGAATTCATTTTGTTCGATTCGCTTGTGAAAATCCGAGTTGAGGGGGCAACATTCATCAGTTGGGAAGACCGAGTTAATTAGAAGAAGCAATCAAATTCAGTGCTGGGCATTCATCTTGCAATTGTGGAGACTGTGAAAGCTAAGTAGGCTGCGTGGAGGGCATGCAT
TGCTTGTGGATGTACCAAGAGACACAAATATAACAGCAAAGGTAATGGAGGGCTTAAACATTCCGAGAGGTGTGCATCGTGTGCTTTTCAGAACACTAAACACTGATAGGCATCTTATGTGGAAACGAGAGTTTGATACAAGTTATGTTGGCTTTATGAAAGATGGAGCACAGTGGCTTGTGGATAATACAGACATTAAA
TTTGTTGGAATTGACTATCTATCAGTTGCGGCATACGATGATTTGATTCCTTCACATAGGGTATTCCTAAAAAGCAAGGAAATCATTTTGGTAGAAGGCTTGAAGTTAGATGACATCGATCCAGGGGCTTATTCATTACATTGCTTGCCCCTAAGATTGCTGGGTGCAGAGGGAGCACCAATAAGATGTATTTTGATGGA
CTAGATTCTTATGTGATTTTGTATGTGCCAGCAAAGAATAAATAGAACCTAAATGCTTGGGGAATACTTTGGATATGTTTGATTTGTAAATGGGTAAAATGGAATACAATGTTTATATGCCAATTGTAGATATTATTTTAGTTTGTGTATTTTGATTATGAACATGCTTGAAAAAGATAGATAGGATTTTGTTATGAGTT
CTCTTGTATGAACATGGAACATTTTGACCTGAGAATATGTCATCTATTTCCATTGGCAAAAATTGTTCCATTTCCATTAAGAAATGTCGCAACTATTATATAGAGAGCCATGAACTTTTATTGATGGTGATTTGGTG
>TRINITY_DN44420_c1_g3_i4 from sample A8 / Example unspliced isoform:CAACTTCTTGTTGAACCGTGGCTTCGGTAGAGAGTTGTGAGAATTTCTTCTCAAGGGGCTGAATCACTTTCAATCGTGGGCACTTGTGGAGGATATTCATGGTGTTTTTTGAGAGGGCCGACTTCCTCTTTGGTCAAATCCATGGACGTTGGAAGAGGACGACCCATTTCTTGTGGATTCGAGCTGAGAGATGGTTAGAG
GGTTTCAGAAGGGGCCGACCCCTTTGGATGTTGATTCGCGGTCTGTGGAGAAGTGCCGAAGTACGTGCAGGGAGGGTCGTGAACTTGGAAGAGTCGTGAGGCTAGTGTGGAGGGTCGGGTGCCCAAAGGAGGAATCCTTGAGTCTTTGACGCTAGTGTGGAGGGTCGCAAGTTTGGAAGAGGAAGCCGTGAAGCGTTATT
GATGAGGAGGTGGACGCGTGGTCTTTAGAAGGGTGTTGAGAGCACCAAAGGGGCAAATCATGAGAATTGAAGGAGGTCGCGAGAAGTCGTCATCATCAGTTGAAAACCAAATCCGTCACAGTGGGCCAAAATTGTCCTTGCTTGGGCGAAATTAATTGCTCAATATCGATTATTGCTTGGGCAAATTCAGTCGTGGAAGT
CGCATTGTTGAAGTGGCCGAATTCAGCAATTTAAAGGGAGGCCGTGGGTATAGCAGCAACCAAATTTAATTACTAAGGGGCGTTCACATTCCATCATTGTCGATTTCATAATTGGTGAAATCGATTTTCTTGAGGCCGAATTAAATTGTTGTGAGCCGAAATTTGGTTGAAGAGGGCCAAGATTATTGTGGGGTTGAATT
TCATGGAAAATTCAGGGAGGCCGTGTTTGTGAGGGCCGATTTCTCTTGGGAAAGGTTAAGCTCCAATTTTGAAGGCCGATCTCTGTTGGAAGGCAAATTCTTGAGACCGAATTCATTTTGTTCGATTCGCTTGTGAAAATCCGAGTTGAGGGGGCAACATTCATCAGTTGGGAAGACCGAGTTAATTAGAAGAAGCAATC
AAATTCAGTGCTGGGCATTCATCTTGCAATTGTGGAGACTGTGAAAGCTAAGTAGGCTGCGTGGAGgtgactgggatagtcaaaattcatccctaggctgtgattcagcgctgggaattatctctgcttctgggcatccattcttgtattgagattcctttttatatgttggatagagtgctagatattgttacacatta
ctagttgaagaattaaaatagtggacaacatatcaatcatttattccagatctcagGGCATGCATTGCTTGTGGATGTACCAAGAGACACAAATATAACAGCAAAGGTAATGGAGGGCTTAAACATTCCGAGAGGTGTGCATCGTGTGCTTTTCAGAACACTAAACACTGATAGGCATCTTATGTGGAAACGAGAGTTTG
ATACAAGTTATGTTGGCTTTATGAAAGATGGAGCACAGTGGCTTGTGGATAATACAGACATTAAATTTGTTGGAATTGACTATCTATCAGTTGCGGCATACGATGATTTGATTCCTTCACATAGGGTATTCCTAAAAAGCAAGGAAATCATTTTGGTAGAAGGCTTGAAGTTAGATGACATCGATCCAGGGGCTTATTCA
TTACATTGCTTGCCCCTAAGATTGCTGGGTGCAGAGGGAGCACCAATAAGATGTATTTTGATGGACTAGATTCTTATGTGATTTTGTATGTGCCAGCAAAGAATAAATAGAACCTAAATGCTTGGGGAATACTTTGGATATGTTTGATTTGTAAATGGGTAAAATGGAATACAATGTTTATATGCCAATTGTAGATATTA
TTTTAGTTTGTGTATTTTGATTATGAACATGCTTGAAAAAGATAGATAGGATTTTGTTATGAGTTCTCTTGTATGAACATGGAACATTTTGACCTGAGAATATGTCATCTATTTCCATTGGCAAAAATTGTTCCATTTCCATTAAGAAATGTCGCAACTATTATATAGAGAGCCATGAACTTTTATTGATGGTGATTTGG
TG
Intron 2 GCATCTTATG ... TTTATGAAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 66.89 | 16.5 | 32.8 | 32.3 |
| A2 | 80.41 | 11 | 28.8 | 39.3 |
| A3 | 71.67 | 15 | 38 | 36 |
| A4 | 63.67 | 9.5 | 19.8 | 13.8 |
| A5 | 71.7 | 7.5 | 20 | 17.5 |
| A6 | 71.88 | 120 | 289.3 | 303.5 |
| A7 | 76.17 | 77.5 | 224.3 | 247.3 |
| A8 | 72.31 | 79 | 191.5 | 202 |
| A9 | 73.97 | 89 | 238 | 248.8 |
| A10 | 75.68 | 42.5 | 132.3 | 124.8 |
>TRINITY_DN115531_c6_g1_i14 from sample A1 / Example spliced isoformTCAATATCTCATAACAAACAAACAACAGCCACGAAAACAAAATCTCCCTAAAATCAAAATCTCCTTCCGGGACAGTCATAGAAGACTCATGGAAGCTAGGAGGACTGGTTGAACACATACCCGAGCATCGTTTTCGGCTATAAAGCAAACATGTCGATACAGAGTGTTTATGTGCTGCTAACTGGGCTTTGTTATGCATC
ATTTTTCAATATAGTTTCATCATCGGAAGCTCACCCCGGGTATGGTACAGGACAATGCGATGTGGGCATTGCTGCTTCAAGAGACCCAGGCAGAATTTTAGACATATCTCATGCATACAGAGAAGATTTGCCTGTTTGGGACTCTTCAGAGGGACTGGGCAATTATCGCTGGCTGGCCTTAAGCATGAAAAACGGGTCAA
TTGCAAACAATTCTGAGATGAAGATGGGTACACATACAGGTACTCATGTGGACGCCCCTGGACATGTCTTCCAAGAGTATTATGAGGCCGGCTTTGACGTGGATACACTGGACCTCAAGATACTCAATGGGCATGCATTGCTTGTGGATGTACCAAGAGACACAAATATAACAGCAAAGGTAATGGAGGGCTTAAACATT
CCGAGAGGTGTGCATCGTGTGCTTTTCAGAACACTAAACACTGATAGATGGAGCACAGTGGCTTGTGGATAATACAGACATTAAATTTGTTGG
>TRINITY_DN115531_c6_g1_i15 from sample A1 / Example unspliced isoform:CCTAAGCCTGCTCTTTCTGTCTTTGTGATCATCTTTAGTTGGCTCAGAGTTTCTTAGGGATTCCTCTGTTGTGCTGGAGAAGAGCCTGTAGCCTGCCAAAAGTGTGTGGGGTAGGCCTTCTTTAGTGCCTCTAGGGTCTTGCTTGAGCTTAGGACTTTCATCTCAAGAAGCGACGGTTAGGATGATAACAAATGATACAT
GTTATCATAAATGTATTGCTTTTCTCTACAATGCGCTTTCATTTTCTTGTAGTTGAAGACAATTTACAAGGGATTCCACTAGTTTTTGTGGAGCACATATGCCCCTTTCTATCTGTTTGTTTATCATTGCTAAAGATTGATATTGTATGATTGTGTTTTTAATTGCAGCAAAGGTAATGGAGGGCTTAAACATTCCGAGA
GGTGTGCATCGTGTGCTTTTCAGAACACTAAACACTGATAGgcatcttatgtggaaacgagagtttgatacaagttatgttggctttatgaaagATGGAGCACAGTGGCTTGTGGATAATACAGACATTAAATTTGTTGGAATTGACTATCTATCAGTTGCGGCATACGATGATTTGATTCCTTCACATAGGGTATTCCT
AAAAAGCAAGGAAATCATTTTGGTAGAAGGCTTGAAGTTAGATGACATCGATCCAGGGGCTTATTCATTACATTGCTTGCCCCTAAGATTGCTGGGTGCAGAGGGAGCACCAATAAGATGTATTTTGATGGACTAGATTCTTATGTGATTTTGTATGTGCCAGCAAAGAATAAATAGAACCTAAATGCTTGGGGAATACT
TTGGATATGTTTGATTTGTAAATGGGTAAAATGGAATACAATGTTTATATGCCAATTGTAGATATTATTTTAGTTTGTGTATTTTGATTATGAACATGCTTGAAAAAGATAGATAGGATTTTGTTATGAGTTCTCTTGTATGAACATGGAACATTTTGACCTGAG
Intron 3 GTAACCTTTA ... TTTATGAAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 60.66 | 12 | 16 | 21 |
| A2 | 93.75 | 1 | 4 | 26 |
| A3 | 61.4 | 11 | 16 | 19 |
| A4 | 52.63 | 9 | 12 | 8 |
| A5 | 70.73 | 6 | 14 | 15 |
| A6 | 57.84 | 82 | 74 | 151 |
| A7 | 63.28 | 47 | 45 | 117 |
| A8 | 61.54 | 50 | 47 | 113 |
| A9 | 58.01 | 59 | 55 | 108 |
| A10 | 58.62 | 30 | 29 | 56 |
>TRINITY_DN115531_c6_g1_i14 from sample A1 / Example spliced isoformTCAATATCTCATAACAAACAAACAACAGCCACGAAAACAAAATCTCCCTAAAATCAAAATCTCCTTCCGGGACAGTCATAGAAGACTCATGGAAGCTAGGAGGACTGGTTGAACACATACCCGAGCATCGTTTTCGGCTATAAAGCAAACATGTCGATACAGAGTGTTTATGTGCTGCTAACTGGGCTTTGTTATGCATC
ATTTTTCAATATAGTTTCATCATCGGAAGCTCACCCCGGGTATGGTACAGGACAATGCGATGTGGGCATTGCTGCTTCAAGAGACCCAGGCAGAATTTTAGACATATCTCATGCATACAGAGAAGATTTGCCTGTTTGGGACTCTTCAGAGGGACTGGGCAATTATCGCTGGCTGGCCTTAAGCATGAAAAACGGGTCAA
TTGCAAACAATTCTGAGATGAAGATGGGTACACATACAGGTACTCATGTGGACGCCCCTGGACATGTCTTCCAAGAGTATTATGAGGCCGGCTTTGACGTGGATACACTGGACCTCAAGATACTCAATGGGCATGCATTGCTTGTGGATGTACCAAGAGACACAAATATAACAGCAAAGGTAATGGAGGGCTTAAACATT
CCGAGAGGTGTGCATCGTGTGCTTTTCAGAACACTAAACACTGATAGATGGAGCACAGTGGCTTGTGGATAATACAGACATTAAATTTGTTGG
>TRINITY_DN115531_c6_g1_i11 from sample A1 / Example unspliced isoform:AGAAATAAAATGAGGGTGGGGAGGATAGCACTCCATCCCGCAACCAATTGGGCTAGACCCAATTGACCATGAGATTCTATGCTAACTGTAAAATTGTATTTATATAGTAGTACATACCTTCATGACGTTAGGATCTGCAGCCAACTAGGGTCGTTGTTGCTAGAGATCCCATCAATAATCTAGATGCAGATCACCTAGCT
GCCCCCTTCTGTTTCACTCAGGATGAATTTGCCTTTATTTTTGGGGCATGTGTTTGCTTTTTCAACATTGTATTTTGAAGATAATATTCTATCAAAGGAATACTTAGAACTTCAGAAGATACTTTGTAATACATTCAGAGTTCTTGTTGTTTATGCCATGATAAACATTTTTTTATGCTGATCCTTGTTTGTTTGCATTC
AGATCTGTAATTTTAGTTCGTCTAGACTCTAGAGTCAGTTGTGGTTATAACTTATAAGTCTAGTGTTATAGTCTTGTTAGTAGCTCCTACGATTGCTAATTAATTTAGTGAAATTCTAACAATCGACACTTATGACAAGGAGACAACAACAGGAGTGAAGAAAACATCAAGAGAACCCAGTTTTATTGAAAATTACAGTA
AAAGAGTAGACAGTGTCACAGTTGTAGAGTTGTAGTATGATACCCTGATAAGGTGCCTTACATAGAGTGGTCTGTATCTCTATCATTACTGTCTACCATTGTGAGGTAGCTCTCATTAGAAAATCAGAACAAGAAGAAAATCAATGCGTACATTTACTACCTTGCTTTATACAGGGTTGGAGTACAAATTCACCCAGTGT
GTCAATTACAAATCCTCACGGACAATTGCAGAATCCTACTAACACCTATGGTGTCAGTTATAAATAGTCGCCATTTTGAATCTAGGAGAAATTGCTGCCAAGTTTGAGGTTCTGTGCAAACTGTGAAATCATACTTATACAGTAGTACAGCCTTTCCTGACATTAGGCTCGGCACCCAGCTGGGGATGTTGCTCCTAGAG
ATCCCATGATTACTTTAGATGCAGATCACCATACTGCCCCCTTCTGGTTCACTCAGGATGAATTTGTCATTATTTTCTGGGAATATGTTTGCTTTTTCAGCATTGTTCATTGCTGCCAAGTATGAGATTCTATGCAAACTGTGAAATTCAAATTATACTACAGTAGTACAGCCATTCCTGACATTACGCTTGGCACCCAG
ATAGGCACGTTGTTCTTAGAGATCCCATAAATACTTCAGATGCAGATTACCTTACTGCCCCCTTCTGGTTCACTCAGGATGAATTTGTCATTATTTCTGGGCATATGTTTGCTTTTTCAACATTGTTCATTGCAGATATTCTATCAAAGTAATGCTTGGAAGATACTTTGTAATACATACATAATTCCTTCTTGTTTGTG
CCATGCTAAACATTTTCTAATTTTCTATACTGCCGCTTGTTTGTTCAAATCTGCAAGGAATTAAAAGAACAGAGACAAATAAGATGAGGTGGATGCTTTATTATTTCTTCAGTGGTTCTGTTTTAAACTATTAGGATTACCGTTTTAATGGTCCCTTTTGCTGATGATAAATAGGGCATGCATTGCTTGTGGATGTACCA
AGAGACACAAATATAACAGCAAAGGTAATGGAGGGCTTAAACATTCCGAGAGGTGTGCATCGTGTGCTTTTCAGAACACTAAACACTGATAGgtaacctttaacttttcatactcatctgctgtgtactcttcttgcacaagtagatattttttcaaagtctgcatcatacattaatctctcaagctttatagatatatt
gatgcaaatttctgtttttatggttattaaaaatctgttaatttccattaacatttcaaatattgatacaaaattggggcaacttttagcatccccttctggagatctgatttgaccttacagatgaagctttgctattctgtcctttcacaggtgacatcaaaatctctactatcaaaacctagtataaaggcatctta
tgtggaaacgagagtttgatacaagttatgttggctttatgaaagATGGAGCACAGTGGCTTGTGGATAATACAGACATTAAATTTGTTGGAATTGACTATCTATCAGTTGCGGCATACGATGATTTGATTCCTTCACATAGGGTATTCCTAAAAAGCAAGGAAATCATTTTGGTAGAAGGCTTGAAGTTAGATGACATC
GATCCAGGGGCTTATTCATTACATTGCTTGCCCCTAAGATTGCTGGGTGCAGAGGGAGCACCAATAAGATGTATTTTGATGGACTAGATTCTTATGTGATTTTGTATGTGCCAGCAAAGAATAAATAGAACCTAAATGCTTGGGGAATACTTTGGATATGTTTGATTTGTAAATGGGTAAAATGGAATACAATGTTTATA
TGCCAATTGTAGATATTATTTTAGTTTGTGTATTTTGATTATGAACATGCTTGAAAAAGATAGATAGGATTTTGTTATGAGTTCTCTTGTATGAACATGGAACATTTTGACCTGAG
Intron 4 GTCATGACAG ... CAACATCAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 22.92 | 37 | 13 | 9 |
| A2 | 15.49 | 30 | 3 | 8 |
| A3 | 15.46 | 41 | 11 | 4 |
| A4 | 21.43 | 22 | 9 | 3 |
| A5 | 27.87 | 22 | 6 | 11 |
| A6 | 16.49 | 309 | 76 | 46 |
| A7 | 15.85 | 239 | 47 | 43 |
| A8 | 17.93 | 206 | 53 | 37 |
| A9 | 15.75 | 254 | 60 | 35 |
| A10 | 16.57 | 141 | 33 | 23 |
>TRINITY_DN45485_c4_g3_i4 from sample A10 / Example spliced isoformGGACATTACAATGGTATAAGAGCTGGAGATCTTGCCATCCTGAGGGGAATTCAGTCGGAATTTCCATTTGAGCTATTAACCATTCATCTCGTGGAATTACTGCTTGCTTGGGGCCAATTGTTTGTGATTTCTGAAGAGGAGGATTTCTTTAGGGAGACTGAACCAGTTTATTGGAGGATCGAATCATTTCTTGAAGAAGC
CGTGGGCAAATAGAAGAAAATTGTGGCACTAAAATATCACTAGAGTTTGGAGGAGGGTCATACCCAACTTCTTGTTGAACCGTGGCTTTGGTAGAGAGTTGTGAGAATTTCTTCTCAAGGGGCTGAATCACTTTCAATCGTGGGCACTTGTGGAGGATATTCATGGTGTTTTTTGAGAGGGCCGACTTCCTCTTTGGTCA
AATCCATGGACGTTGGAAGAGGACGACCCATTTCTTGTGGATTCGAGCTGAGAGATGGTTAGAGGGTTTCAGAAGGGGCCGACCCCTTTGGATGTTGATTCGCGGTCTGTGGAGAAGTGCCGAAGTACGTGCAGGGAGGGTCGTGAACTTGGAAGAGTCGTGAGGCTAGTGTGGAGGGTCGGGTGCCCAAAGGAGGAATC
CTTGAGTCTTTGACGCTAGTGTGGAGGGTCGCAAGTTTGGAAGAGGAAGCCGTGAAGCGTTATTGATGAGGAGGTGGACGCGTGGTCTTTAGAAGGGTGTTGAGAGCACCAAAGGGGCAAATCATGAGAATTGAAGGAGGTCGCGAGAAGTCGTCATCATCAGTTGAAAACCAAATCCGTCACAGTGGGCCAAAATTGTC
CTTGCTTGGGCGAAATTAATTGCTCAATATCGATTATTGCTTGGGCAAATTCAGTCGTGGAAGTCGCATTGTTGAAGTGGCCGAATTCAGCAATTTAAAGGGAGGCCGTGGGTATAGCAGCAACCAAATTTAATTACTAAGGGGCGTTCACATTCCATCATTGTCGATTTCATAATTGGTGAAATCGATTTTCTTGAGGC
CGAATTAAATTGTTGTGAGCCGAAATTTGGTTGAAGAGGGCCAAGATTATTGTGGGGTTGAATTTCATGGAAAATTCAGGGAGGCCGTGTTTGTGAGGGCCGATTTCTCTTGGGAAAGGTTAAGCTCCAATTTTGAAGGCCGATCTCTGTTGGAAGGCAAATTCTTGAGACCGAATTCATTTTGTTCGATTCGCTTGTGA
AAATCCGAGTTGAGGGGGCAACATTCATCAGTTGGGAAGACCGAGTTAATTAGAAGAAGCAATCAAATTCAGTGCTGGGCATTCATCTTGCAATTGTGGAGACTGTGAAAGCTAAGTAGGCTGCGTGGAGGTGACTGGGATAGTCAAAATTCATCCCTAGGCTGTGATTCAGCGCTGGGAATTATCTCTGCTTCTGGGCA
TCCATTCTTGTATTGAGATTCCTTTTTATATGTTGGATAGAGTGCTAGATATTGTTACACATTACTAGTTGAAGAATTAAAATAGTGGACAACATATCAATCATTTATTCCAGATCTCAGGGCATGCATTGCTTGTGGATGTACCAAGAGACACAAATATAACAGCAAAGGTAATGGAGGGCTTAAACATTCCGAGAGGT
GTGCATCGTGTGCTTTTCAGAACACTAAACACTGATAGGCATCTTATGTGGAAACGAGAGTTTGATACAAGTTATGTTGGCTTTATGAAAGATGGAGCACAGTGGCTTGTGGATAATACAGACATTAAATTTGTTGGAATTGACTATCTATCAGTTGCGGCATACGATGATTTGATTCCTTCACATAGGGTATTCCTAAA
AAGCAAGGAAATCATTTTGGTAGAAGGCTTGAAGTTAGATGACATCGATCCAGGGGCTTATTCATTACATTGCTTGCCCCTAAGATTGCTGGGTGCAGAGGGAGCACCAATAAGATGTATTTTGATGGACTAGATTCTTATGTGATTTTGTATGTGCCAGCAAAGAATAAATAGAACCTAAATGCTTGGGGAATACTTTG
GATATGTTTGATTTGTAAATGGGTAAAATGGAATACAATGTTTATATGCCAATTGTAGATATTATTTTAGTTTGTGTATTTTGATTATGAACATGCTTGAAAAAGATAGATAGGATTTTGTTATGAGTTCTCTTGTATGAACATGGAACATTTTGACCTGAGAATATGTCATCTATTTCCATTGGCAAAAATTGTTCCAT
TTTCATAAGAAATGTTGCAACTATTATATAGAGAGCCA
>TRINITY_DN45485_c4_g3_i3 from sample A10 / Example unspliced isoform:ATTTTCTGGGAATATGTTTGCTTTTTCAGCATTGTTCATTGCTGCCAAGTATGAGATTCTATGCAAACTGTGAAATTCAAATTATACTACAGTAGTACAGCCATTCCTGACATTACGCTTGGCACCCAGATAGGCACGTTGTTCTTAGAGATCCCATAAATACTTCAGATGCAGATTACCTTACTGCCCCCTTCTGGTTC
ACTCAGGATGAATTTGTCATTATTTCTGGGCATATGTTTGCTTTTTCAACATTGTTCATTGCAGATATTCTATCAAAGTAATGCTTGGAAGATACTTTGTAATACATACATAATTCCTTCTTGTTTGTGCCATGCTAAACATTTTCTAATTTTCTATACTGCCGCTTGTTTGTTCAAATCTGCAAGGAATTAAAAGAACA
GAGACAAATAAGATGAGGTGGATGCTTTATTATTTCTTCAGTGGTTCTGTTTTAAACTATTAGGATTACCGTTTTAATGGTCCCTTTTGCTGATGATAAATAGGGCATGCATTGCTTGTGGATGTACCAAGAGACACAAATATAACAGCAAAGGTAATGGAGGGCTTAAACATTCCGAGAGGTGTGCATCGTGTGCTTTT
CAGAACACTAAACACTGATAGgtcatgacagaggagttcaatcaacttcaacaatcaggcatcaacaccaccaacatcaagGCATCTTATGTGGAAACGAGAGTTTGATACAAGTTATGTTGGCTTTATGAAAGATGGAGCACAGTGGCTTGTGGATAATACAGACATTAAATTTGTTGGAATTGACTATCTATCAGTTG
CGGCATACGATGATTTGATTCCTTCACATAGGGTATTCCTAAAAAGCAAGGAAATCATTTTGGTAGAAGGCTTGAAGTTAGATGACATCGATCCAGGGGCTTATTCATTACATTGCTTGCCCCTAAGATTGCTGGGTGCAGAGGGAGCACCAATAAGATGTATTTTGATGGACTAGATTCTTATGTGATTTTGTATGTGC
CAGCAAAGAATAAATAGAACCTAAATGCTTGGGGAATACTTTGGATATGTTTGATTTGTAAATGGGTAAAATGGAATACAATGTTTATATGCCAATTGTAGATATTATTTTAGTTTGTGTATTTTGATTATGAACATGCTTGAAAAAGATAGATAGGATTTTGTTATGAGTTCTCTTGTATGAACATGGAACATTTTGAC
CTGAGAATATGTCATCTATTTCCATTGGCAAAAATTGTTCCATTTTCATAAGAAATGTTGCAACTATTATATAGAGAGCCA
Intron 5 GTAACCTTTA ... TAGTATAAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 32.37 | 28.5 | 16 | 11 |
| A2 | 15.38 | 27.5 | 4 | 6 |
| A3 | 24.2 | 35 | 16 | 6 |
| A4 | 31.01 | 17.5 | 12 | 3 |
| A5 | 41.16 | 18 | 14 | 11 |
| A6 | 17.43 | 269.5 | 74 | 39 |
| A7 | 16.8 | 209 | 45 | 39 |
| A8 | 18.57 | 177 | 47 | 33 |
| A9 | 15.71 | 222 | 55 | 27 |
| A10 | 16.41 | 123.5 | 29 | 19 |
>TRINITY_DN115531_c6_g1_i15 from sample A1 / Example spliced isoformCCTAAGCCTGCTCTTTCTGTCTTTGTGATCATCTTTAGTTGGCTCAGAGTTTCTTAGGGATTCCTCTGTTGTGCTGGAGAAGAGCCTGTAGCCTGCCAAAAGTGTGTGGGGTAGGCCTTCTTTAGTGCCTCTAGGGTCTTGCTTGAGCTTAGGACTTTCATCTCAAGAAGCGACGGTTAGGATGATAACAAATGATACAT
GTTATCATAAATGTATTGCTTTTCTCTACAATGCGCTTTCATTTTCTTGTAGTTGAAGACAATTTACAAGGGATTCCACTAGTTTTTGTGGAGCACATATGCCCCTTTCTATCTGTTTGTTTATCATTGCTAAAGATTGATATTGTATGATTGTGTTTTTAATTGCAGCAAAGGTAATGGAGGGCTTAAACATTCCGAGA
GGTGTGCATCGTGTGCTTTTCAGAACACTAAACACTGATAGGCATCTTATGTGGAAACGAGAGTTTGATACAAGTTATGTTGGCTTTATGAAAGATGGAGCACAGTGGCTTGTGGATAATACAGACATTAAATTTGTTGGAATTGACTATCTATCAGTTGCGGCATACGATGATTTGATTCCTTCACATAGGGTATTCCT
AAAAAGCAAGGAAATCATTTTGGTAGAAGGCTTGAAGTTAGATGACATCGATCCAGGGGCTTATTCATTACATTGCTTGCCCCTAAGATTGCTGGGTGCAGAGGGAGCACCAATAAGATGTATTTTGATGGACTAGATTCTTATGTGATTTTGTATGTGCCAGCAAAGAATAAATAGAACCTAAATGCTTGGGGAATACT
TTGGATATGTTTGATTTGTAAATGGGTAAAATGGAATACAATGTTTATATGCCAATTGTAGATATTATTTTAGTTTGTGTATTTTGATTATGAACATGCTTGAAAAAGATAGATAGGATTTTGTTATGAGTTCTCTTGTATGAACATGGAACATTTTGACCTGAG
>TRINITY_DN115531_c6_g1_i11 from sample A1 / Example unspliced isoform:AGAAATAAAATGAGGGTGGGGAGGATAGCACTCCATCCCGCAACCAATTGGGCTAGACCCAATTGACCATGAGATTCTATGCTAACTGTAAAATTGTATTTATATAGTAGTACATACCTTCATGACGTTAGGATCTGCAGCCAACTAGGGTCGTTGTTGCTAGAGATCCCATCAATAATCTAGATGCAGATCACCTAGCT
GCCCCCTTCTGTTTCACTCAGGATGAATTTGCCTTTATTTTTGGGGCATGTGTTTGCTTTTTCAACATTGTATTTTGAAGATAATATTCTATCAAAGGAATACTTAGAACTTCAGAAGATACTTTGTAATACATTCAGAGTTCTTGTTGTTTATGCCATGATAAACATTTTTTTATGCTGATCCTTGTTTGTTTGCATTC
AGATCTGTAATTTTAGTTCGTCTAGACTCTAGAGTCAGTTGTGGTTATAACTTATAAGTCTAGTGTTATAGTCTTGTTAGTAGCTCCTACGATTGCTAATTAATTTAGTGAAATTCTAACAATCGACACTTATGACAAGGAGACAACAACAGGAGTGAAGAAAACATCAAGAGAACCCAGTTTTATTGAAAATTACAGTA
AAAGAGTAGACAGTGTCACAGTTGTAGAGTTGTAGTATGATACCCTGATAAGGTGCCTTACATAGAGTGGTCTGTATCTCTATCATTACTGTCTACCATTGTGAGGTAGCTCTCATTAGAAAATCAGAACAAGAAGAAAATCAATGCGTACATTTACTACCTTGCTTTATACAGGGTTGGAGTACAAATTCACCCAGTGT
GTCAATTACAAATCCTCACGGACAATTGCAGAATCCTACTAACACCTATGGTGTCAGTTATAAATAGTCGCCATTTTGAATCTAGGAGAAATTGCTGCCAAGTTTGAGGTTCTGTGCAAACTGTGAAATCATACTTATACAGTAGTACAGCCTTTCCTGACATTAGGCTCGGCACCCAGCTGGGGATGTTGCTCCTAGAG
ATCCCATGATTACTTTAGATGCAGATCACCATACTGCCCCCTTCTGGTTCACTCAGGATGAATTTGTCATTATTTTCTGGGAATATGTTTGCTTTTTCAGCATTGTTCATTGCTGCCAAGTATGAGATTCTATGCAAACTGTGAAATTCAAATTATACTACAGTAGTACAGCCATTCCTGACATTACGCTTGGCACCCAG
ATAGGCACGTTGTTCTTAGAGATCCCATAAATACTTCAGATGCAGATTACCTTACTGCCCCCTTCTGGTTCACTCAGGATGAATTTGTCATTATTTCTGGGCATATGTTTGCTTTTTCAACATTGTTCATTGCAGATATTCTATCAAAGTAATGCTTGGAAGATACTTTGTAATACATACATAATTCCTTCTTGTTTGTG
CCATGCTAAACATTTTCTAATTTTCTATACTGCCGCTTGTTTGTTCAAATCTGCAAGGAATTAAAAGAACAGAGACAAATAAGATGAGGTGGATGCTTTATTATTTCTTCAGTGGTTCTGTTTTAAACTATTAGGATTACCGTTTTAATGGTCCCTTTTGCTGATGATAAATAGGGCATGCATTGCTTGTGGATGTACCA
AGAGACACAAATATAACAGCAAAGGTAATGGAGGGCTTAAACATTCCGAGAGGTGTGCATCGTGTGCTTTTCAGAACACTAAACACTGATAGgtaacctttaacttttcatactcatctgctgtgtactcttcttgcacaagtagatattttttcaaagtctgcatcatacattaatctctcaagctttatagatatatt
gatgcaaatttctgtttttatggttattaaaaatctgttaatttccattaacatttcaaatattgatacaaaattggggcaacttttagcatccccttctggagatctgatttgaccttacagatgaagctttgctattctgtcctttcacaggtgacatcaaaatctctactatcaaaacctagtataaagGCATCTTA
TGTGGAAACGAGAGTTTGATACAAGTTATGTTGGCTTTATGAAAGATGGAGCACAGTGGCTTGTGGATAATACAGACATTAAATTTGTTGGAATTGACTATCTATCAGTTGCGGCATACGATGATTTGATTCCTTCACATAGGGTATTCCTAAAAAGCAAGGAAATCATTTTGGTAGAAGGCTTGAAGTTAGATGACATC
GATCCAGGGGCTTATTCATTACATTGCTTGCCCCTAAGATTGCTGGGTGCAGAGGGAGCACCAATAAGATGTATTTTGATGGACTAGATTCTTATGTGATTTTGTATGTGCCAGCAAAGAATAAATAGAACCTAAATGCTTGGGGAATACTTTGGATATGTTTGATTTGTAAATGGGTAAAATGGAATACAATGTTTATA
TGCCAATTGTAGATATTATTTTAGTTTGTGTATTTTGATTATGAACATGCTTGAAAAAGATAGATAGGATTTTGTTATGAGTTCTCTTGTATGAACATGGAACATTTTGACCTGAG
Intron 6 GTGACATCAA ... TAGTATAAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 44.44 | 15 | 12 | 2 |
| A2 | 20 | 4 | 1 | 3 |
| A3 | 47.83 | 12 | 11 | 1 |
| A4 | 47.37 | 10 | 9 | 0 |
| A5 | 47.62 | 11 | 10 | 4 |
| A6 | 49.36 | 79 | 77 | 0 |
| A7 | 49.47 | 48 | 47 | 0 |
| A8 | 49.53 | 54 | 53 | 0 |
| A9 | 47.15 | 65 | 58 | 3 |
| A10 | 49.23 | 33 | 32 | 2 |
>TRINITY_DN99678_c0_g1_i5 from sample A5 / Example spliced isoformCAAAGGTAATGGAGGGCTTAAACATTCCGAGAGGTGTGCATCGTGTGCTTTTCAGAACACTAAACACTGATAGGCATCTTATGTGGAAACGAGAGTTTGATACAAGTTATGTTGGCTTTATGAAAGATGGAGCACAGTGGCTTGTGGATAATACAGACATTAAATTTGTTGGGCATGCATTGCTTGTGGATGTACCAAGA
GACACAAATATAACAGCAAAGGTAATGGAGGGCTTAAACATTCCGAGAGGTGTGCATCGTGTGCTTTTCAGAACACTAAACACTGATAGTTGAATGAAAGAAAATAAGCCAGATTGTGAAGAAAATGTACATTGAGAGTGCATAATGATGTACAACTTGGCCCAAGAAAGTTCCATTGCATAATAGGTGTTTTGATTAAA
AGTACAGTGCATATACAATCAACCTTGATGATGTTTTGATCATATGCTTCAGGAATTTTTTGTTTTCATTTTGATCACATTAGTCAACACCCTACAATTTTGATGAAACTTCCTCATCCAAGCATTAAAATAAGGTAGGGAAAGCTTCCCATACTTAATTAGTGATTTTGCTTGACTAAAGGGTACATTTTTATTAAGGT
C
>TRINITY_DN99678_c0_g1_i7 from sample A5 / Example unspliced isoform:CAAAGGTAATGGAGGGCTTAAACATTCCGAGAGGTGTGCATCGTGTGCTTTTCAGAACACTAAACACTGATAGGCATCTTATGTGGAAACGAGAGTTTGATACAAGTTATGTTGGCTTTATGAAAGATGGAGCACAGTGGCTTGTGGATAATACAGACATTAAATTTGTTGGGCATGCATTGCTTGTGGATGTACCAAGA
GACACAAATATAACAGCAAAGGTAATGGAGGGCTTAAACATTCCGAGAGGTGTGCATCGTGTGCTTTTCAGAACACTAAACACTGATAGgtgacatcaaaatctctactatcaaaacctagtataaagTTGAATGAAAGAAAATAAGCCAGATTGTGAAGAAAATGTACATTGAGAGTGCATAATGATGTACAACTTGGC
CCAAGAAAGTTCCATTGCATAATAGGTGTTTTGATTAAAAGTACAGTGCATATACAATCAACCTTGATGATGTTTTGATCATATGCTTCAGGTCAGTTGAATATGAAATACTCTATGATTACTTGAAATAGACGGATTACCCCTTTTGCATGTTGACAATTGATTAAAGCTTATCATGAAAATGTGGTCACAGGAATTTT
T