sp|Q8LF20|CAP2_ARATH ----> Putative clathrin assembly protein At2g25430
Intron 1 GTGAAGCCTG ... GGTTGTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 66.28 | 29 | 57 | 6 |
| A2 | 69.57 | 21 | 48 | 8 |
| A3 | 71.43 | 16 | 40 | 2 |
| A4 | 75 | 6 | 18 | 2 |
| A5 | 85.19 | 4 | 23 | 1 |
| A6 | 79.07 | 9 | 34 | 8 |
| A7 | 74.22 | 33 | 95 | 24 |
| A8 | 75.89 | 34 | 107 | 31 |
| A9 | 72.55 | 28 | 74 | 13 |
| A10 | 71.91 | 25 | 64 | 13 |
>TRINITY_DN48042_c0_g1_i4 from sample A7 / Example spliced isoformAAGAAACTGGTCCTGCTCTTGATTATTTGAGAAAATGCTCTGGGAAAGTTTGCTGATGGGCCTTTCTTTTTGGGTGAATTTAGTATGGTTGACATTGCATATGGTCCTTTTGTTGAGAGATTTCAAAGAACAACCGGTTGGTTCAAATTTCTCTTTACTCTATTATGAAGGAGAGATTTCAGCTTTACAAAGACATTACT
GATGGCTTGGCTATTTTGATTGATGGTTTCTTTGACACGGAGTACCAAGATTGTGTCAGTTCATTCGAAACGTATACAAAAGATGCCTAACAGATCGATGAGCTTGCTTCCTTTTACAACTTGTGCAAATACATTGGAGTTTGTAGGACTTCAGAGTATCCTGATGTACAGAATATTTCACAGAAACTTCTTGAGATGCT
ATAAGAGTTCCTAAAACGCCGGTCATCTTCTCGTGATAACAGACTCGAGAGCCCAGAGCCCAGGCCAGAGGGACGGAAATTCCAGGCCCAAAGGCAGAGGAGCCTGTTGAGGATATGAATAGTATAAAAGCTCTACCAGCGCTTGGAGATGTCACTAAGGAAGAATTTGAAAAACCAATTTTGCCAAAGCAAGAGGAGAA
GAAAGAGGACTTAATAAATATAAGTGAAGTGCCTATTTCTTCTGAAGAGAAAGGAAACATATTTGCATTATCCCTATTCACTTGTTCCGCAGCCACATCTATTGTCTCAAGCAATTGGGAAACATTTTCAACTTCTGAAGGACCTGAATCATGCTTAACCAGCCTCTTAAGCGTGTTTGAGATGCTGAATGCCTTAGTAT
CATTTTGGGCATTAACAAAATCCAGGTAAGAAGCTTTGGACTGCAGTTGAGAGAATTTTCAGATACATGTGTGGCACAATAGATTATGCACTGTGCTACCAAGAGTGATGGTAATCAGCAGTGGCAGAGAACGTGTATAGGGTAAGAAGTTGATCTGCATGGATCTGTGGATGCAATTGGGGTAGAGTTAAAAGATATCC
TCCAATCTACAAGTGGCTATGTATTTAACATATTTATAGGAGCAACGAGTTGGATGAGCAAGACATAGTCAGTACTAGCCCTAACCAGAGCTGATGCTGAGTATGTGGCAGCTACTCAATCTTGTTAGAATGCAATCTAGCTACAAGGATTATGCAAATATGTTGGTCTGAATCAAGGACCAGCAGCTGTAGCCATTGCT
TTAGAAAGGAATCCTACATATCACGTATTATCTAAGCACATAGATGTCCAGTACTATTTCATATCACTTGAGAGAATGCCGTTGATGCATTGACAAAGACCATCAATGTAGAGAAGTTCAACTGGTGTACAAACTCAGTGGAGTTTTGAAACATGTCAATGAATGTGATCACCGAGTGGGAGATTGGAGGGATATGTATC
GACCACTTTCCCTACATTGCATATAACACTGCTAAGACTCATGTATTGACAAGAAGCCTTAGCAGTCATCAATATTGATAAAATCACCATTTGTATGAAGCACTTTTCAGAGTTATTTCAGCTCTAAAATCAGCAAAGAAGGGCACCACATTTGAGAGTTCTCCAGCAGGTTTTGTGCTCAAGTGTTTCAGTTCCTTGAA
CCAACATGGGGGGTGCACTCTTTGGAGGAAAACGTCAGGATTTTTAGTGCTTATTTTATTTTGAGGAAGAATCAGCAGTCTTGCATCACATCCTTCACTTCTGAATTTAGCATTGTTACAAGCTAAATCTGTCATACATGGCAGATTCAACCTATCCAGTGATCAGGTGGCAGCACTTAGGGAAGATTGACGCCCAAAAT
TTTGGGATGCTATATCTGATTCTTGTCAACAACAAGCTGCACATGGAGCA
>TRINITY_DN48042_c0_g1_i8 from sample A7 / Example unspliced isoform:AAGAAACTGGTCCTGCTCTTGATTATTTGAGAAAATGCTCTGGGAAAGTTTGCTGATGGGCCTTTCTTTTTGGGTGAATTTAGTATGGTTGACATTGCATATGGTCCTTTTGTTGAGAGATTTCAAAGAACAACCGGTTGGTTCAAATTTCTCTTTACTCTATTATGAAGGAGAGATTTCAGCTTTACAAAGACATTACT
GATGGCTTGGCTATTTTGATTGATGGTTTCTTTGACACGGAGTACCAAGATTGTGTCAGTTCATTCGAAACGTATACAAAAGATGCCTAACAGATCGATGAGCTTGCTTCCTTTTACAACTTGTGCAAATACATTGGAGTTTGTAGGACTTCAGAGTATCCTGATGTACAGAATATTTCACAGAAACTTCTTGAGATGCT
ATAAGAGTTCCTAAAACGCCGGTCATCTTCTCGTGATAACAGACTCGAGAGCCCAGAGCCCAGGCCAGAGGGACGGAAATTCCAGGCCCAAAGGCAGAGGAGCCTGTTGAGGATATGAATAGTATAAAAGCTCTACCAGCGCTTGGAGATGTCACTAAGGAAGAATTTGAAAAACCAATTTTGCCAAAGCAAGAGGAGAA
GAAAGAGGACTTAATAAATATAAGTGAAGTGCCTATTTCTTCTGAAGAGAAAGGAAACATATTTGCATTATCCCTATTCACTTGTTCCGCAGCCACATCTATTGTCTCAAGCAATTGGGAAACATTTTCAACTTCTGAAGGACCTGAATCATGCTTAACCAGCCTCTTAAGCGTGTTTGAGATGCTGAATGCCTTAGTAT
CATTTTGGGCATTAACAAAATCCAGGTAAGAAGCTTTGGACTGCAGTTGAGAGAATTTTCAGATACATGTGTGGCACAATAGATTATGCACTGTGCTACCAAGAGTGATGGTAATCAGCAGTGGCAGAGAACGTGTATAGGGTAAGAAGTTGATCTGCATGGATCTGTGGATGCAATTGGGGTAGAGTTAAAAGATATCC
TCCAATCTACAAGTGGCTATGTATTTAACATATTTATAGGAGCAACGAGTTGGATGAGCAAGACATAGTCAGTACTAGCCCTAACCAGAGCTGATGCTGAGTATGTGGCAGCTACTCAATCTTGTTAGAATGCAATCTAGCTACAAGGATTATGCAAATATGTTGGTCTGAATCAAGGACCAGCAGCTGTAGCCATTGCT
TTAGAAAGGAATCCTACATATCACGTATTATCTAAGCACATAGATGTCCAGTACTATTTCATATCACTTGAGAGAATGCCGTTGATGCATTGACAAAGACCATCAATGTAGAGAAGTTCAACTGGTGTACAAACTCAGTGGAGTTTTGAAACATGTCAATGAATGTGATCACCACTTTCCCTACATTGCATATAACACTG
CTAAGACTCATGTATTGACAAGAAGCCTTAGCAGTCATCAATATTGATAAAATCACCATTTGTATGAAGCACTTTTCAGAGTTATTTCAGCTCTAAAATCAGCAAAGAAGGGCACCACATTTGAGAGTTCTCCAGCAGGTTTTGTGCTCAAGTGTTTCAGTTCCTTGAACCAACATGGGGGGTGCACTCTTTGGAGGAAA
ACGTCAGGATTTTTAGTGCTTATTTTATTTTGAGGAAGAATCAGCAGTCTTGCATCACATCCTTCACTTCTGAATTTAGCATTGTTACAAGCTAAATCTGTCATACATGGCAGATTCAACCTATCCAGTGATCAGgtgaagcctggatgccagttacacttcccttggtaactcagcacaaggatgaggctaccctcact
tccaaatctgcattgaatgctgactaactaagccctaacacatactattataggaaaattagatctgcgcaagcaggattaatagaacatataggatatcacatttgatcatgtaggacatgaacagaattaaagagttccataataggatcttgtcaccttgattagaaagagaggctaatatgatgcattatgtagaa
gtaatctagttttaaaggtctttaggtaggtaacagtcaagcgagtagagacaagtataggattattagaatccagtctctgatgcaccaagtatctgagagaatatgtgcaaggaaagttgttgaaagggcacaaggcactactgtaagaaggttttgatgtgtaattctatatacaaatggagaatcagtatatggtt
agaatgagataccgatggaatatttttatataaccataaacttggcctaattacctaagtaaaaataacaaaagcatacagtgaaggaatggtacacgatacacgacagggggacatgcaatattaaacatagcagtgggtataacttcatttattgaattttcacagcaggttgatagctgtactattaacaataatct
ttcttcacagaaacaaattaatttcttttataggacacactactaaaggtagcagctaataattccttttccacagcatacagagttgaaatggaggagttttatttttttaatcccacaataatatgtgtcataagagaacattttatatttatcaataaaaatctgctgtattatacaagcaaaaagaaaaaaaaaaa
ctttttaatgacgagttagaacccattatcgtaaaaaaaacttcacctttcagcacatgactttgtcagcattgaagacgaaaatatgcactttaagaagttccttttcattatataaacttgtagcacataatttgaaaatattgccggttcttgaatggaagaacatttatcactaaaaagggagatatagccatata
cttgaactggtaggctattgcttcatgtatggggattcaaaacattatctttggcagaagattatggggaaaataagacactgcaagaagacacaatgccaaacgattggtccatatatcaactttgggtcttcaacaaactcaatcatctttaaacaactctggggcatctcctatggattctgtacagtcagatttaa
atgtgaggaagctttgtcttggaaaggggcagccaaagatatcaagggtacttgaaccccttgaggcatgctttaacgagttaacatcaccattcatcttgaatcaaatatgcaaaggtgtgcctcaatgtaacaaaaatataaaaatatcattgattaatgatctgcaaaagtataaatgcattcagccgtaacaagtc
acttaaagcttacatgcagcacatattttttggacccaatacaattataatgaactacacctcatattgaagttgacaatgggtaaggtgtttggatggataaatagttcctgactatataatactattagtgcctgagggatgaggagtaactttctgatcatcaagcaatgaatgagaatgcaagacatgttatagca
ttgcatctctctaagttttgaaagaatcatcctttgatttcagcatgaagctagtatttcatccgcttgtaagaactatgacataaaatcaagatcattgagaccaaatatctcagtccatatctcattccatctaaatattagactgatttcaatcaatttgctggttgtgcagGTGGCAGCACTTAGGGAAGATTGAC
GCCCAAAATTTTGGGATGCTATATCTGATTCTTGTCAACAACAAGCTGCACATGGAGCA
Intron 2 GTACGCTATC ... ATTTCTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 26.24 | 67.4 | 22 | 23.8 |
| A2 | 19.37 | 38 | 6 | 9 |
| A3 | 26.08 | 58.6 | 8.8 | 20.6 |
| A4 | 21.14 | 49.8 | 18.2 | 13 |
| A5 | 43.18 | 13.2 | 2 | 10 |
| A6 | 17.27 | 36 | 5.4 | 7 |
| A7 | 34.63 | 92.2 | 13.2 | 48.2 |
| A8 | 25.51 | 72.2 | 9.8 | 24.2 |
| A9 | 31.03 | 73.2 | 9 | 32.4 |
| A10 | 31.01 | 69.6 | 8.4 | 31 |
>TRINITY_DN109995_c0_g3_i6 from sample A4 / Example spliced isoformCTGCTGGTACATGGTCAGCCCAGTCGGGTTCAGATGTCCTTTGGATATATTGGACGCAACTGCCACAGCTACGAAGAGCACTATCCCGTGCGCTAGGGCACTCTGCCACCAGGCCCGCTGGCATCGCGAAGGGTCGTTTGTCAGCTTGGTTGCGCATTCAAGAAACGGACAGAAATCAGTCATTCAGTTAGTACGCCATT
ATTCTAGCTCTACAGACACGCCGTGAATCGATGGAAAGGCAGAGAGCCTTTGGCCCAATGTTGCTGGATCTGCCGCACGCCATCATCATACGGATAGCCGAGCATCTCCCATTGACGGATCTGGCCAATTTCATAGCTTCCTGCAAAACCCTCGCGGCCATGGCCGGCGACTTTTACGAGGAGCGCAAGTGCCTCGATAT
GTCGTGCTTCGAAACCCCGACGCTGAGTCCGCGGGTTTGCGAGCAGCTGATACGGCGCTTCTCGGCCGCTCGGCTCCACAGTTGCATCTTCTGTTTCGACGTCGGGTGGCACTACAGGTTCCTTCTCTTGAGCACAATGGCAAAGTCGTAGGAGAGAGTTAGGATTTATTCGAGTATCTTGAGAACAATTTCGAAGGACC
TAAACTCTTTCCCACGGATGCTGCCAAAAAAGAGGCTGCAAATGAGTTACTGAAGTATACAGATACTTTTACAAAAACTTTGTTCATCGGTTTGACCAAGCCAGAGCCAGAGGTTGTACAAGAAACTGGTCCTGCTCTTGATTATTTGAGAAAATGCTCTGGGAAAGTTTGCTGATGGGCCTTTCTTTTTGGGTGAATTT
AGTATGGTTGACATTGCATATGGTCCTTTTGTTGAGAGATTTCAAAGAACAACCGGTTGGTTCAAATTTCTCTTTACTCTATTATGAAGGAGAGATTTCGGCTTTACAAAAACATTACTGATGGCTTGGCTATTTTGATTGATGGTTTCTTTGACACGGAGTACCAAGATTGTGTCAGTTCATTCGAAACGTATACAAAA
GATGCCTAACAGATCGATGAGCTTGCTTCCTTTTACAACTTGTGCAAATACATTGGAGTTTGTAGGACTTCAGAGTATCCTGATGTACAGAATATTTCACAGAAACTTCTTGAGATGCTATAAGAGTTCCTAAAACGCCGGTCATCTTCTCGTGATAACAGACTCGAGAGCCCAGAGCCCAGGCCAGAGGGACGGAAATT
CCAGGCCCAAAGGCAGAGGAGCCTGTTGAGGATATGAATAGTATAAAAGCTCTACCAGCGCTTGGAGATGTCACTAAGGAAGAATTTGAAAAACCAATTTTGCCAAAGAAAGAGGAGAAGAAAGAGGACTTAATAAATATAAGTGAAGTGCCTATTTCTTCTGAAGAGAAAGGAAACAAATTTGCATTATCCCTATTCAC
TGGTTCCGCAGCCACATCTATTGTCTCAAGCAATTGGGAAACATTTTCAACTTCTGAAGGACCTGAATCATGCTTAACCAGCCTCTTAAGCGTGTTTGAGATGCTGAATGCCTTAGTATCATTTTGGGCATCAACAAAATCCAGGTAAGAAGCTTTGGACTGCAGTTGACAGAATTTTCAGATACATGTGTGGCACAATA
GATTATGCACTGTGCTACCAAGAGTGATGGTAATCAGCAGTGGCAGAGAACGTGTATAGGGTAAGAAGTTGATCTGCATGGATCTGTGGATGCAATTGGGGTAGAGTTAAAAGATATCCTCCAATCTACAAGTGGCTATGTATTTAACATATTTATAGGAGCAACGAGTTGGATGAGCAAGACATAGTCAGTACTAGCCC
TAACCAGAGCTGATGCTGAGTATGTGGCAGCTACTCAATCTTGTTAGAATGCAATCTAGCTACAAGGATTATGCAAATATGTTGGTCTGAATCAAGGACCAGCAGCTGTAGCCATTGCTTTAGAAAGGAATCCTACATATCACGTATTATCTAAGCACATAGATGTCCAGTACTATTTCATATCACTTGAGAGAATGCCG
TTGATGCATTGACAAAGACCATCAATGTAGAGAAGTTCAACTGGTGTACAAACTCAGTGGAGTTTTGAAACATGTCAATGAATGTGATCACC
>TRINITY_DN109995_c0_g3_i11 from sample A4 / Example unspliced isoform:CATCGTACACCTACAGTTCCAAGGTATTTCTCTTGTTATGTCCTTGACATCTAGTATTTGATCCATTTTGTATTAATCAGCTTTCACAATGAAATATTTGGCAAGATTATGGTTCAGTGTAAGTTTTTATTATTAATATTTTTTCATAAATCAATCTTTTCTGTCATGATTTCATTGGCTGAGTACACAGATGAGCCTCG
TTTTCTCCTCCCCAGGGGCCGGCGGCGCGCTGAGTTCAGCGTATCCTAGCTGCAGGATTTGTCATCAGAATTTGCAGTTAATATATTTAATAAACTGCTGGTACATGGTCAGCCCAGTCGGGTTCAGATGTCCTTTGGATATATTGGACGCAACTGCCACAGCTACGAAGAGCACTATCCCGTGCGCTAGGGCACTCTGC
CACCAGGCCCGCTGGCATCGCGAAGGGTCGTTTGTCAGCTTGGTTGCGCATTCAAGAAACGGACAGAAATCAGTCATTCAGTTAGTACGCCATTATTCTAGCTCTACAGGTTATTCGAAATTCCTCCAACGACTATCTGCTCGCGACGATAGAATTAGCCTACACGCCGTGAATCGATGGAAAGGCAGAGAGCCTTTGGC
CCAATGTTGCTGGATCTGCCGCACGCCATCATCATACGGATAGCCGAGCATCTCCCATTGACGGATCTGGCCAATTTCATAGCTTCCTGCAAAACCCTCGCGGCCATGGCCGGCGACTTTTACGAGGAGCGCAAGTGCCTCGATATGTCGTGCTTCGAAACCCCGACGCTGAGTCCGCGGGTTTGCGAGCAGCTGATACG
GCGCTTCTCGGCCGCTCGGCTCCACAGTTGCATCTTCTGTTTCGACGTCGGGTGGCACTACAGGTTCCTTCTCTTGAGCACAATGGCAAAGTCGTAGGAGAGAGTTAGGATTTATTCGAGTATCTTGAGAACAATTTCGAAGGACCTAAACTCTTTCCCACGGATGCTGCCAAAAAAGAGGCTGCAAATGAGTTACTGAA
GTATACAGATACTTTTACAAAAACTTTGTTCATCGGTTTGACCAAGCCAGAGCCAGAGGTTGTACAAGAAACTGGTCCTGCTCTTGATTATTTGAGAAAATGCTCTGGGAAAGTTTGCTGATGGGCCTTTCTTTTTGGGTGAATTTAGTATGgtacgctatctttatattttgtttgccatttgagtttatatatatttt
ttccaattaacaccaacatattatcaaatgttgaagagatgtgtaccatttctgcagGTTGACATTGCATATGGTCCTTTTGTTGAGAGATTTCAAAGAACAACCGGTTGGTTCAAATTTCTCTTTACTCTATTATGAAGGAGAGATTTCAGCTTTACAAAGACATTACTGATGGCTTGGCTATTTTGATTGATGGTTTC
TTTGACACGGAGTACCAAGATTGTGTCAGTTCATTCGAAACGTATACAAAAGATGCCTAACAGATCGATGAGCTTGCTTCCTTTTACAACTTGTGCAAATACATTGGAGTTTGTAGGACTTCAGAGTATCCTGATGTACAGAATATTTCACAGAAACTTCTTGAGATGCTATAAGAGTTCCTAAAACGCCGGTCATCTTC
TCGTGATAACAGACTCGAGAGCCCAGAGCCCAGGCCAGAGGGACGGAAATTCCAGGCCCAAAGGCAGAGGAGCCTGTTGAGGATATGAATAGTATAAAAGCTCTACCAGCGCTTGGAGATGTCACTAAGGAAGAATTTGAAAAACCAATTTTGCCAAAGAAAGAGGAGAAGAAAGAGGACTTAATAAATATAAGTGAAGT
GCCTATTTCTTCTGAAGAGAAAGGAAACAAATTTGCATTATCCCTATTCACTGGTTCCGCAGCCACATCTATTGTCTCAAGCAATTGGGAAACATTTTCAACTTCTGAAGGACCTGAATCATGCTTAACCAGCCTCTTAAGCGTGTTTGAGATGCTGAATGCCTTAGTATCATTTTGGGCATCAACAAAATCCAGGTAAG
AAGCTTTGGACTGCAGTTGACAGAATTTTCAGATACATGTGTGGCACAATAGATTATGCACTGTGCTACCAAGAGTGATGGTAATCAGCAGTGGCAGAGAACGTGTATAGGGTAAGAAGTTGATCTGCATGGATCTGTGGATGCAATTGGGGTAGAGTTAAAAGATATCCTCCAATCTACAAGTGGCTATGTATTTAACA
TATTTATAGGAGCAACGAGTTGGATGAGCAAGACATAGTCAGTACTAGCCCTAACCAGAGCTGATGCTGAGTATGTGGCAGCTACTCAATCTTGTTAGAATGCAATCTAGCTACAAGGATTATGCAAATATGTTGGTCTGAATCAAGGACCAGCAGCTGTAGCCATTGCTTTAGAAAGGAATCCTACATATCACGTATTA
TCTAAGCACATAGATGTCCAGTACTATTTCATATCACTTGAGAGAATGCCGTTGATGCATTGACAAAGACCATCAATGTAGAGAAGTTCAACTGGTGTACAAACTCAGTGGAGTTTTGAAACATGTCAATGAATGTGATCACC
Intron 3 GTATTTCTCT ... GAGTACACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 40 | 9 | 0 | 6 |
| A2 | 20 | 4 | 0 | 1 |
| A3 | 18.75 | 13 | 0 | 3 |
| A4 | 25 | 6 | 0 | 2 |
| A5 | 44.44 | 5 | 0 | 4 |
| A6 | 50 | 1 | 0 | 1 |
| A7 | 30 | 7 | 0 | 3 |
| A8 | 27.27 | 8 | 0 | 3 |
| A9 | 20 | 8 | 0 | 2 |
| A10 | 13.04 | 20 | 0 | 3 |
>TRINITY_DN109995_c0_g3_i8 from sample A4 / Example spliced isoformCAGCGATTTGGCCTCCGTGGCCGATTTCTCACTCGCAGATCTCCTGTAATGCTTTTTAATGTGCGAGGTCGTTGAAGGCCTTTCCACCCTACGGATGTTGCGGGTTCGAATCCTCTCAGATATTGCAGAGCTCACCTCCTCTTCTTCCACTTCCGTTGTGCCGCATCTTTCCGTCGATTCTTCCTGATAAATCGGCTCTA
GTTCTTGCTGTTGCTACTGCTTCTGCGGGGCAGCTGATGGGTTATATTTATACTCCTCATGTGAGCTGCCCAATATGTTAAATCCATGATGTTGCAGGTTTGAATTTGCAAGTATGGCAAAAATGATACAATTTACTAACACATACAGAACTGCACGCGTCAGCCATGCCGAGAACGTCTCACGAACTCCCGGAAAGACG
GGGGAAACGAATTCATACGAAGCAACAAATGCAAGCTTCACGAACGCGAGAACAGACACAATCGACAAAGCCATGAAACAGAGCTTTATCAGTCCGAGCATTCTATTCGAAACTCCGGCTGAAGACTTGAGATTCTACATATCTGAAACTCAGATCGACCCGATTTTTTGTAGAATTGGCCGCCGAAGTTCAGAAAATCC
GCAAGAAAAGAGATTGCAGAAGGGAGCTAGTAATTATTACATGACAAGAAAAGGAAGCCGTCCCACTTCTTTTATCTTAAAGAAAACGCAAAGAGCAGCATATATATAAAGGGAGACCAAACAGAAAAATTACGGCATGTATACATGCATCGTACACCTACAGTTCCAAGATGAGCCTCGTTTTCTCCTCCCCAGGGGCC
GGCGGCGCGCTGAGTTCAGCGTATCCTAGCTGCAGGATTTGTCATCAGAATTTGCAGTTAATATATTTAATAAATCGCTGGTACATGGTCAGCCCAGTCGGGTTCAGATGTCCTTTGGATATATTGGACGCAACTGCCACAGCTACGAAGAGCACTATCCCGTGCGCTAGGGCACTCTGCCACCAGGCCCGCTGGCATCG
CGAAGGGTCGTTTGTCAGCTTGGTTGCGCATTCAAGAAACGGACAGAAATCAGTCATTCAGTTAGTACGCCATTATTCTAGCTCTACAGGTTATTCGAAATTCCTCCAACGACTATCTGCTCGCGACGATAGAATTAGCCTACACGCCGTGAATCGATGGAAAGGCAGAGAGCCTTTGGCCCAATGTTGCTGGATCTGCC
GCACGCCATCATCATACGGATAGCCGAGCATCTCCCATTGACGGATCTGGCCAATTTCATAGCTTCCTGCAAAACCCTCGCGGCCATGGCCGGCGACTTTTACGAGGAGCGCAAGTGCCTCGATATGTCGTGCTTCGAAACCCCGACGCTGAGTCCGCGGGTTTGCGAGCAGCTGATACGGCGCTTCTCGGCCGCTCGGC
TCCACAGTTGCATCTTCTGTTTCGACGTCGGGTGGCACTACAGGTTCCTTCTCTTGAGCACAATGGCAAAGTCGTAGGAGAGAGTTAGGATTTATTCGAGTATCTTGAGAACAATTTCGAAGGACCTAAACTCTTTCCCACGGATGCTGCCAAAAAAGAGGCTGCAAATGAGTTACTGAAGTATACAGATACTTTTACAA
AAACTTTGTTCATCGGTTTGACCAAGCCAGAGCCAGAGGTTGTACAAGAAACTGGTCCTGCTCTTGATTATTTGAGAAAATGCTCTGGGAAAGTTTGCTGATGGGCCTTTCTTTTTGGGTGAATTTAGTATGGTTGACATTGCATATGGTCCTTTTGTTGAGAGATTTCAAAGAACAACCGGTTGGTTCAAATTTCTCTT
TACTCTATTATGAAGGAGAGATTTCAGCTTTACAAAGACATTACTGATGGCTTGGCTATTTTGATTGATGGTTTCTTTGACACGGAGTACCAAGATTGTGTCAGTTCATTCGAAACGTATACAAAAGATGCCTAACAGATCGATGAGCTTGCTTCCTTTTACAACTTGTGCAAATACATTGGAGTTTGTAGGACTTCAGA
GTATCCTGATGTACAGAATATTTCACAGAAACTTCTTGAGATGCTATAAGAGTTCCTAAAACGCCGGTCATCTTCTCGTGATAACAGACTCGAGAGCCCAGAGCCCAGGCCAGAGGGACGGAAATTCCAGGCCCAAAGGCAGAGGAGCCTGTTGAGGATATGAATAGTATAAAAGCTCTACCAGCGCTTGGAGATGTCAC
TAAGGAAGAATTTGAAAAACCAATTTTGCCAAAGAAAGAGGAGAAGAAAGAGGACTTAATAAATATAAGTGAAGTGCCTATTTCTTCTGAAGAGAAAGGAAACAAATTTGCATTATCCCTATTCACTGGTTCCGCAGCCACATCTATTGTCTCAAGCAATTGGGAAACATTTTCAACTTCTGAAGGACCTGAATCATGCT
TAACCAGCCTCTTAAGCGTGTTTGAGATGCTGAATGCCTTAGTATCATTTTGGGCATCAACAAAATCCAGGTAAGAAGCTTTGGACTGCAGTTGACAGAATTTTCAGATACATGTGTGGCACAATAGATTATGCACTGTGCTACCAAGAGTGATGGTAATCAGCAGTGGCAGAGAACGTGTATAGGGTAAGAAGTTGATC
TGCATGGATCTGTGGATGCAATTGGGGTAGAGTTAAAAGATATCCTCCAATCTACAAGTGGCTATGTATTTAACATATTTATAGGAGCAACGAGTTGGATGAGCAAGACATAGTCAGTACTAGCCCTAACCAGAGCTGATGCTGAGTATGTGGCAGCTACTCAATCTTGTTAGAATGCAATCTAGCTACAAGGATTATGC
AAATATGTTGGTCTGAATCAAGGACCAGCAGCTGTAGCCATTGCTTTAGAAAGGAATCCTACATATCACGTATTATCTAAGCACATAGATGTCCAGTACTATTTCATATCACTTGAGAGAATGCCGTTGATGCATTGACAAAGACCATCAATGTAGAGAAGTTCAACTGGTGTACAAACTCAGTGGAGTTTTGAAACATG
TCAATGAATGTGATCACCGAGTGGGAGATTGGAGGGATATGTATCGACCACTTTCCCTACATTGCATATAACACTGCTAAGACTCATGTATTGACAAGAAGCCTTAGCAGTCATCAATATTGATAAAATCACCATTTGTATGAAGCACTTTTCAGAGTTATTTCAGCTCTAAAATCAGCAAAGAAGGGCACCACATTTGA
GAGTTCTCCAGCAGGTTTTGTGCTCAAGTGTTTCAGTTCCTTGAACCAACATGGGGGGTGCACTCTTTGGAGGAAAACGTCAGGATTTTTAGTGCTTATTTTATTTTGAGGAAGAATCAGCAGTCTTGCATCACATCCTTCACTTCTGAATTTAGCATTGTTACAAGCTAAATCTGTCATACATGGCAGATTCAACCTAT
CCAGTGATCAGGTGAAGCCTGGATGCCAGTTACACTTCCCTTGGTAACTCAGCACAAGGATGAGGCTACCCTCACTTCCAAATCTGCATTGAATGCTGACTAACTAAGCCCTAACACATACTATTATAGGAAAATTAGATCTGCGCAAGCAGGATTAATAGAACATATAGGATATCACATTTGATCATGTAGGACATGAA
CAGAATTAAAGAGTTCCATAATAGGATCTTGTCACCTTGATTAGAAAGAGAGGCTAATATGATGCATTATGTAGAAGTAATCTAGTTTTAAAGGTCTTTAGGTAGGTAACAGTCAAGCGAGTAGAGACAAGTATAGGATTATTAGAATCCAGTCTCTGATGCACCAAGTATCTGAGAGAATATGTGCAAGGAAAGTTGTT
GAAAGGGCACAAGGCACTACTGTAAGAAGGTTTTGATGTGTAATTCTATATACAAATGGAGA
>TRINITY_DN109995_c0_g3_i1 from sample A4 / Example unspliced isoform:CATCGTACACCTACAGTTCCAAGgtatttctcttgttatgtccttgacatctagtatttgatccattttgtattaatcagctttcacaatgaaatatttggcaagattatggttcagtgtaagtttttattattaatattttttcataaatcaatcttttctgtcatgatttcattggctgagtacacagATGAGCCTCG
TTTTCTCCTCCCCAGGGGCCGGCGGCGCGCTGAGTTCAGCGTATCCTAGCTGCAGGATTTGTCATCAGAATTTGCAGTTAATATATTTAATAAACTGCTGGTACATGGTCAGCCCAGTCGGGTTCAGATGTCCTTTGGATATATTGGACGCAACTGCCACAGCTACGAAGAGCACTATCCCGTGCGCTAGGGCACTCTGC
CACCAGGCCCGCTGGCATCGCGAAGGGTCGTTTGTCAGCTTGGTTGCGCATTCAAGAAACGGACAGAAATCAGTCATTCAGTTAGTACGCCATTATTCTAGCTCTACAGGTTATTCGAAATTCCTCCAACGACTATCTGCTCGCGACGATAGAATTAGCCTACACGCCGTGAATCGATGGAAAGGCAGAGAGCCTTTGGC
CCAATGTTGCTGGATCTGCCGCACGCCATCATCATACGGATAGCCGAGCATCTCCCATTGACGGATCTGGCCAATTTCATAGCTTCCTGCAAAACCCTCGCGGCCATGGCCGGCGACTTTTACGAGGAGCGCAAGTGCCTCGATATGTCGTGCTTCGAAACCCCGACGCTGAGTCCGCGGGTTTGCGAGCAGCTGATACG
GCGCTTCTCGGCCGCTCGGCTCCACAGTTGCATCTTCTGTTTCGACGTCGGGTGGCACTACAGGTATGATCAAGAAACGCTCGACGCCATCCTCGCCCGCTTTCTTGACAACATAAACCCCTCCGCTCGGCAGCTCCACGCC
Intron 4 GTGAAGCCTG ... GGTTGTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 66.28 | 29 | 57 | 6 |
| A2 | 69.57 | 21 | 48 | 8 |
| A3 | 71.43 | 16 | 40 | 2 |
| A4 | 75 | 6 | 18 | 2 |
| A5 | 85.19 | 4 | 23 | 1 |
| A6 | 79.07 | 9 | 34 | 8 |
| A7 | 74.22 | 33 | 95 | 24 |
| A8 | 75.89 | 34 | 107 | 31 |
| A9 | 72.55 | 28 | 74 | 13 |
| A10 | 71.91 | 25 | 64 | 13 |
>TRINITY_DN48042_c0_g1_i4 from sample A7 / Example spliced isoformAAGAAACTGGTCCTGCTCTTGATTATTTGAGAAAATGCTCTGGGAAAGTTTGCTGATGGGCCTTTCTTTTTGGGTGAATTTAGTATGGTTGACATTGCATATGGTCCTTTTGTTGAGAGATTTCAAAGAACAACCGGTTGGTTCAAATTTCTCTTTACTCTATTATGAAGGAGAGATTTCAGCTTTACAAAGACATTACT
GATGGCTTGGCTATTTTGATTGATGGTTTCTTTGACACGGAGTACCAAGATTGTGTCAGTTCATTCGAAACGTATACAAAAGATGCCTAACAGATCGATGAGCTTGCTTCCTTTTACAACTTGTGCAAATACATTGGAGTTTGTAGGACTTCAGAGTATCCTGATGTACAGAATATTTCACAGAAACTTCTTGAGATGCT
ATAAGAGTTCCTAAAACGCCGGTCATCTTCTCGTGATAACAGACTCGAGAGCCCAGAGCCCAGGCCAGAGGGACGGAAATTCCAGGCCCAAAGGCAGAGGAGCCTGTTGAGGATATGAATAGTATAAAAGCTCTACCAGCGCTTGGAGATGTCACTAAGGAAGAATTTGAAAAACCAATTTTGCCAAAGCAAGAGGAGAA
GAAAGAGGACTTAATAAATATAAGTGAAGTGCCTATTTCTTCTGAAGAGAAAGGAAACATATTTGCATTATCCCTATTCACTTGTTCCGCAGCCACATCTATTGTCTCAAGCAATTGGGAAACATTTTCAACTTCTGAAGGACCTGAATCATGCTTAACCAGCCTCTTAAGCGTGTTTGAGATGCTGAATGCCTTAGTAT
CATTTTGGGCATTAACAAAATCCAGGTAAGAAGCTTTGGACTGCAGTTGAGAGAATTTTCAGATACATGTGTGGCACAATAGATTATGCACTGTGCTACCAAGAGTGATGGTAATCAGCAGTGGCAGAGAACGTGTATAGGGTAAGAAGTTGATCTGCATGGATCTGTGGATGCAATTGGGGTAGAGTTAAAAGATATCC
TCCAATCTACAAGTGGCTATGTATTTAACATATTTATAGGAGCAACGAGTTGGATGAGCAAGACATAGTCAGTACTAGCCCTAACCAGAGCTGATGCTGAGTATGTGGCAGCTACTCAATCTTGTTAGAATGCAATCTAGCTACAAGGATTATGCAAATATGTTGGTCTGAATCAAGGACCAGCAGCTGTAGCCATTGCT
TTAGAAAGGAATCCTACATATCACGTATTATCTAAGCACATAGATGTCCAGTACTATTTCATATCACTTGAGAGAATGCCGTTGATGCATTGACAAAGACCATCAATGTAGAGAAGTTCAACTGGTGTACAAACTCAGTGGAGTTTTGAAACATGTCAATGAATGTGATCACCGAGTGGGAGATTGGAGGGATATGTATC
GACCACTTTCCCTACATTGCATATAACACTGCTAAGACTCATGTATTGACAAGAAGCCTTAGCAGTCATCAATATTGATAAAATCACCATTTGTATGAAGCACTTTTCAGAGTTATTTCAGCTCTAAAATCAGCAAAGAAGGGCACCACATTTGAGAGTTCTCCAGCAGGTTTTGTGCTCAAGTGTTTCAGTTCCTTGAA
CCAACATGGGGGGTGCACTCTTTGGAGGAAAACGTCAGGATTTTTAGTGCTTATTTTATTTTGAGGAAGAATCAGCAGTCTTGCATCACATCCTTCACTTCTGAATTTAGCATTGTTACAAGCTAAATCTGTCATACATGGCAGATTCAACCTATCCAGTGATCAGGTGGCAGCACTTAGGGAAGATTGACGCCCAAAAT
TTTGGGATGCTATATCTGATTCTTGTCAACAACAAGCTGCACATGGAGCA
>TRINITY_DN48042_c0_g1_i3 from sample A7 / Example unspliced isoform:AAGAAACTGGTCCTGCTCTTGATTATTTGAGAAAATGCTCTGGGAAAGTTTGCTGATGGGCCTTTCTTTTTGGGTGAATTTAGTATGGTTGACATTGCATATGGTCCTTTTGTTGAGAGATTTCAAAGAACAACCGGTTGGTTCAAATTTCTCTTTACTCTATTATGAAGGAGAGATTTCAGCTTTACAAAGACATTACT
GATGGCTTGGCTATTTTGATTGATGGTTTCTTTGACACGGAGTACCAAGATTGTGTCAGTTCATTCGAAACGTATACAAAAGATGCCTAACAGATCGATGAGCTTGCTTCCTTTTACAACTTGTGCAAATACATTGGAGTTTGTAGGACTTCAGAGTATCCTGATGTACAGAATATTTCACAGAAACTTCTTGAGATGCT
ATAAGAGTTCCTAAAACGCCGGTCATCTTCTCGTGATAACAGACTCGAGAGCCCAGAGCCCAGGCCAGAGGGACGGAAATTCCAGGCCCAAAGGCAGAGGAGCCTGTTGAGGATATGAATAGTATAAAAGCTCTACCAGCGCTTGGAGATGTCACTAAGGAAGAATTTGAAAAACCAATTTTGCCAAAGCAAGAGGAGAA
GAAAGAGGACTTAATAAATATAAGTGAAGTGCCTATTTCTTCTGAAGAGAAAGGAAACATATTTGCATTATCCCTATTCACTTGTTCCGCAGCCACATCTATTGTCTCAAGCAATTGGGAAACATTTTCAACTTCTGAAGGACCTGAATCATGCTTAACCAGCCTCTTAAGCGTGTTTGAGATGCTGAATGCCTTAGTAT
CATTTTGGGCATTAACAAAATCCAGGTAAGAAGCTTTGGACTGCAGTTGAGAGAATTTTCAGATACATGTGTGGCACAATAGATTATGCACTGTGCTACCAAGAGTGATGGTAATCAGCAGTGGCAGAGAACGTGTATAGGGTAAGAAGTTGATCTGCATGGATCTGTGGATGCAATTGGGGTAGAGTTAAAAGATATCC
TCCAATCTACAAGTGGCTATGTATTTAACATATTTATAGGAGCAACGAGTTGGATGAGCAAGACATAGTCAGTACTAGCCCTAACCAGAGCTGATGCTGAGTATGTGGCAGCTACTCAATCTTGTTAGAATGCAATCTAGCTACAAGGATTATGCAAATATGTTGGTCTGAATCAAGGACCAGCAGCTGTAGCCATTGCT
TTAGAAAGGAATCCTACATATCACGTATTATCTAAGCACATAGATGTCCAGTACTATTTCATATCACTTGAGAGAATGCCGTTGATGCATTGACAAAGACCATCAATGTAGAGAAGTTCAACTGGTGTACAAACTCAGTGGAGTTTTGAAACATGTCAATGAATGTGATCACCACTTTCCCTACATTGCATATAACACTG
CTAAGACTCATGTATTGACAAGAAGCCTTAGCAGTCATCAATATTGATAAAATCACCATTTGTATGAAGCACTTTTCAGAGTTATTTCAGCTCTAAAATCAGCAAAGAAGGGCACCACATTTGAGAGTTCTCCAGCAGGTTTTGTGCTCAAGTGTTTCAGTTCCTTGAACCAACATGGGGGGTGCACTCTTTGGAGGAAA
ACGTCAGGATTTTTAGTGCTTATTTTATTTTGAGGAAGAATCAGCAGTCTTGCATCACATCCTTCACTTCTGAATTTAGCATTGTTACAAGCTAAATCTGTCATACATGGCAGATTCAACCTATCCAGTGATCAGgtgaagcctggatgccagttacacttcccttggtaactcagcacaaggatgaggctaccctcact
tccaaatctgcattgaatgctgactaactaagccctaacacatactattataggaaaattagatctgcgcaagcaggattaatagaacatataggatatcacatttgatcatgtaggacatgaacagaattaaagagttccataataggatcttgtcaccttgattagaaagagaggctaatatgatgcattatgtagaa
gtaatctagttttaaaggtctttaggtaggtaacagtcaagcgagtagagacaagtataggattattagaatccagtctctgatgcaccaagtatctgagagaatatgtgcaaggaaagttgttgaaagggcacaaggcactactgtaagaaggttttgatgtgtaattctatatacaaatggagaatcagtatatggtt
agaatgagataccgatggaatatttttatataaccataaacttggcctaattacctaagtaaaaataacaaaagcatacagtgaaggaatggtacacgatacacgacagggggacatgcaatattaaacatagcagtgggtataacttcatttattgaattttcacagcaggttgatagctgtactattaacaataatct
ttcttcacagaaacaaattaatttcttttataggacacactactaaaggtagcagctaataattccttttccacagcatacagagttgaaatggaggagttttatttttttaatcccacaataatatgtgtcataagagaacattttatatttatcaataaaaatctgctgtattatacaagcaaaaagaaaaaaaaaaa
ctttttaatgacgagttagaacccattatcgtaaaaaaaacttcacctttcagcacatgactttgtcagcattgaagacgaaaatatgcactttaagaagttccttttcattatataaacttgtagcacataatttgaaaatattgccggttcttgaatggaagaacatttatcactaaaaagggagatatagccatata
cttgaactggtaggctattgcttcatgtatggggattcaaaacattatctttggcagaagattatggggaaaataagacactgcaagaagacacaatgccaaacgattggtccatatatcaactttgggtcttcaacaaactcaatcatctttaaacaactctggggcatctcctatggattctgtacagtcagatttaa
atgtgaggaagctttgtcttggaaaggggcagccaaagatatcaagggtacttgaaccccttgaggcatgctttaacgagttaacatcaccattcatcttgaatcaaatatgcaaaggtgtgcctcaatgtaacaaaaatataaaaatatcattgattaatgatctgcaaaagtataaatgcattcagccgtaacaagtc
acttaaagcttacatgcagcacatatttttttggacccaatacaattataatgaactacacctcatattgaagttgacaatgggtaaggtgtttggatggataaatagttcctgactatataatactattagtgcctgagggatgaggagtaactttctgatcatcaagcaatgaatgagaatgcaagacatgttatagc
attgcatctctctaagttttgaaagaatcatcctttgatttcagcatgaagctagtatttcatccgcttgtaagaactatgacataaaatcaagatcattgagaccaaatatctcagtccatatctcattccatctaaatattagactgatttcaatcaatttgctggttgtgcagGTGGCAGCACTTAGGGAAGATTGA
CGCCCAAAATTTTGGGATGCTATATCTGATTCTTGTCAACAACAAGCTGCACATGGAGCA