sp|Q8LPQ5|BTS_ARATH ----> Zinc finger protein BRUTUS
Intron 1 GTCAGTTCTT ... ATGGTTTTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 18.44 | 292 | 66 | 66 |
| A2 | 18.21 | 348 | 110 | 45 |
| A3 | 20.22 | 294 | 88 | 61 |
| A4 | 15.02 | 280 | 55 | 44 |
| A5 | 17.75 | 139 | 33 | 27 |
| A6 | 18.21 | 339 | 87 | 64 |
| A7 | 19.14 | 524 | 154 | 94 |
| A8 | 18.53 | 387 | 111 | 65 |
| A9 | 18.32 | 477 | 131 | 83 |
| A10 | 18.71 | 430 | 130 | 68 |
>TRINITY_DN108213_c5_g2_i3 from sample A3 / Example spliced isoformCTTCTCTAGCCATGGAAAGTCTTCGATGGAAATGGAATTAAGGACTCTAGCCCTGGAACATATTTGATGGAAATGGAATTCAGCTTTTGTGGCCATAGACCAACAGCGTTATCGGTGGAGTTTGCAAAATCCGAGTCAGATGTGTTAATCCATGCACGTATACAGCGCGAACGTGGATGCCTCCCATTTGCCACGGTGCC
AAAAACGTTAACGGGAGTTTGCGAGGAAGGAAGGAATTTGTTAATCTAAAGAGGTGAAAAAGCAGGCACGGGAGTGGGCGAAGAATAGAGGTCGGTTGAGAACTCTGGAAAACTATTGTTCGGCTCTTTGGGTTCATGAAATTTGGGGATCCCGATATCTGCGAATGGTATTTGGTGATTTTATCACTGCAGAAACCCCG
GTTTTCTGAGGTGTACAAGACGTTATGGCGACTCCTTTGACAGGGCTTCAGCACGCCCAGGGACTCTTGGCTCCCATTGAACGGCCATTGGGGTTCGTGGATCCCTCAATGGCTTATGTGCAGCATTCCGCTCTGAAATTCCCCATTTTGGTTTTTCTCTACTTTCACAAGGCCATCAGATGCGAGCTCGGTACGCTTCA
CAGGGATGCTCTGGCTATTGAGAAGGAGAGCGACGGCGAGATTCGGACCCTTCTCGATCGGTACCACTTCTTGCGGGTTATTTACAAGCACCACAGCAATGCCGAGGACGAGGTCATCTTTCCAGCTCTTGATATGCGTGTAAAGAATGTGGCTCACACATATTCCTTGGAGCATAAAGGGGAAAGTGACCTGTTTGATC
AGGTGTTTGAATTATTAAATTCAGCCTTAAAGGACAATGACCATGGTTCTGTGAAATTGCGCCGAGAACTTGTTTGCTGCACGGAGGCCATTCAGACATCGCTCTGTCAACATATGTCGAAAGAAGAGGAGCAGGTTTTCCCACTGCTTATACAAGAATTTTCATTTGAAGAGCAGGCTGCACTAGTGTGGCAGTTCATG
TGCAGCATCCCTGTGAACCTGATTGAGGAATTTCTTCCATGGCTGACCTCTTCTCTTTCTTCTGATGAACGCCAGGATATGATCAAGTGTATGCATGAAATTGTTCCAAAAGAAAGGCTCCTTCAACAGGTTGTTTTTACCTGGCTGAAAGAAAAGTGCATCTCATCTGATGTGGAAGATGCTTTTAGAGATGAGAATAA
AGAAATAATAGGCTCTTCGGAAGGATTGCTATCTTCAAAAGCTGCCACAACAGTGGGCCAGAGTGGACAAAGCTCAAGAGATTGTTGTAAGATGATGTGCAAAAGGTCACATTTAGCCATAAATAATCATGCTGATAATAATGCTCATGTGGTGGTTCTGTTTCCAATTGATGAGATAATACACTGGCACAATGCAATTC
GAAAGGAATTAAAGGAACTTGCAGAGGAGGCACGTCGAATACAATTTTCAGGAGATTTTTCAAATTTGTCTTCATTTAATGACCGTTTACAGTTCCTTGCAGAAGTTTGCATTTTTCATAGTATTGCAGAGGATAAAGTTGTTTTTCCAGCTGTTGATGAGAAGGTCAAGAAGGGTGTTTCATTCATCAATGAGCATGCC
CAAGAAGAAAGTCAGTTTAATGATTTTCGTCACCTTATAGAAAGCATTCAGAATGCTGGAGTTAGTTCTAGTACATCTGAATTTTACAATAAGCTTTGTGCACAAGCTGATCAAATAGTAGAAACCATCGAAAAGCATTTTCTTAACGAGGAGAATGAGGTTCTTCCTCTCGCACGCAAACACTGCAGTGTTAAAGAGCA
ACGGAATCTTCTATACCAGAGCTTACGTGTGATGCCCCTAAAATTGTTAGAGCGTGTACTCCCATGGCTTGTAGCAATATTACAGGAAGAGGAGGCCAAGGATATGCTTCAAAATATGCGTATGGCAGCTCCTGCCTCTGATACAGCCCTAGTTACACTATTCTCTGGCTGGGCTTGTAAAGGACGCCCACAAAACAAGT
CTAAATCAGGGAGATTCATGTGTATTTCTTCAGATGCTGAAAATGATTGCCCTGTTAAAAGAATTAGTGAAATGGGATTGGAGATGAGTGGAAACTGTGATATTTGTGCCATTGTGTCAGATTGCAAAGGTAATACAGAATGTTCTTCCACATATGTGGATGAAAGGCCATTGAAGCGGCCTCACTGTAGCAAAACAGAG
AAAACAGAGAAAACAGAGAGAGATGACAACATTTCTGGTCAAAGCACTTTGGTAGGTGTTAAATGCTCATCAGAAACCCCCTGTGCAAGCCAGTCTTGCTGTGTTCCTGGATTAGGAGTGACCAGTAACAACCTGGTTATGGGAACAATCCCTACTGGAAGGAACTTGCGTTCGCTTTCCATGAATTCTCCAGTTGGTGC
CTCTTTAAGTTCTAGCCTGTTTGGTTGGGGAACTGATATTGGCTCATATGACTTTGGTCAAGCACCTAAGCCAATTGATCACATCTTTCAGTTTCACAAGGCTATTCGAAAAGATTTAGAATATTTGGATGTCGAATCAGCAAGGCTTATAGATTGTGATGAAACATTTCTTCGTCATTTTAGTGGACGCTTTCGTTTGC
TGTGGGGACTCTATCGAGCTCACAGCAATTCAGAAGATGAAATTGTCTTCCCAGCTTTAGAGGCCAAAGAGTCTCTTCACAATGTGAGCCATTCATACACTATTGATCACAAGCAGGAGGAACAGCTTTTCAATGATATATCTTGTGTTCTCTCTGAGCTTTCGCATCTGCATGAGAATTTGATTATAACTAGTCAGTTT
CCCAGTGCAGATAGGAACGAGACAAATCCCAGTGCCTCTGAACCTGCAGATTGGAAACTGAAGCATCAAGAACTTGCCGCAAAGCTTCAGCGTATGTGCAAATCTATAAGAGTCACGTTAGACCAACATGTATTTCGGGAAGAACTTGAGCTATGGCCATTGTTTGACAGTCATTTTACTGTAGAGGAACAGGATAAAAT
TGTAGGTCGCATAATTGGCACCACAGGAGCAGAAGTGCTTCAGTCAATGCTACCATGGGTGACAAGTGTTCTCACACAGGAAGAGCAAAATACAATGATGGATACTTGGCGGCAGGCTACTAAAAATACAATGTTTGATGAATGGCTTAGTGCTTGGTGGAAGGAATCTCCAGCATCAATTCCCCTATCAACATTTGTGT
CAGAGGAGGAATCTCCAGCATCAATTCCCCAATCAACATTTGTGTCAGAGGACGAAAATCTTACACCTTCAGGTCAAACCATTCATGATTGTTTTGAGCAAGGCAGCCAGAAGTTCAAGCCTGGGTGGAACGATATTTTCCGAATGAATCAGAAGGAGCTTGAGTCAGCAATACGCAAGGTGTCAAGTGATGCTTCCCTT
GATCCACGGCAAAAAGCATATCTTATTCAGAACCTCATGACAAGCCGATGGATTGCTGCTCAGCAGAAGTTGCCCCAGTCAAGAGCAAGTCAGTCTGGGAATGGTGAAGACATTCCTGGGCGCTGCCTGTCATATCGAGATTTAGATCAGAAAATATTTGGATGTGAGCATTACAAGCGGAACTGCAAACTGAAAGCTGG
TTGTTGTAACCAACTTTTCACATGTAGATTCTGCCATGATAAAGTCAGTGACCACTCAATGGACAGGAAAGCAACAAAAGAGATGATGTGCATGAAATGCTTGCAGATCCAGCCTGTTGCATCAAATTGTGTAACTCCTTCCTGCAAAGAATTTTCTATGGCACAGTATTTCTGCAATATTTGCAAGTTTTTTGATGATG
AAAGAGAAGTATACCATTGTCCATTCTGCAATTTGTGTCGTGTTGGAAAAGGACTGGGTATTGATTTCTTCCATTGCATGACTTGCAATGGTTGTATGTCAAAGACTCTGGCAGTGCATAGATGTCGAGAAAGGGGCCTTGAGTCAAACTGCCCAATATGCAGCGACTTTCTCTTCACTTCTAGTGCCCCTGTGAAAGCT
CTTCCTTGTGGTCACTTTATGCATTCAGCTTGTTTCCAGGCATACACCTGCAGTAATTATACATGCCCAATATGTAGCAAGTCGTTGGGAGACATGGGTGTAAGTCATCTTGTTTCTCTGTTTATTTTGTTTTCTCCATTTTAAAGCTTTGTGCTATACTATTGTCAATAGGTGGGAGCTTTCTTACAATAAAAGTTTAG
ACAATAACGGTGTATCTTTGTTATATAGGCCTTACTATATCTGCCTGCTTGATTGCCATTTGTTATGCAGAAAAGTATAGGGAAAATGACTATACTTCAGCCAACGTAATTCCTATGACATAAATGATTTTTCTAAGAGTTAACAATGAAGCCATTCTACTGCTTCCTTTACACTTATGAAGAGATGCATGAAACTAGCA
CAAGTAGAGATTGCCCTCCGAATAGGTCTCATAATATGTGTAATATCTATGGCATGAATGATGACAGTTTTAAGCTTTAGCAGAAATGACAATTGTGATCTTGAATGTTTATCTTTCCAACTAGTTGGTCTGTAGACCACATTTGATTTGTTCTTTTCGCGTGCCTGTAATTTTGGTTAGAGTTCATTAAAAGATTTGTA
TAATTTTATTTAGAGCTGGTAAAAGTCTACAAACTGTAATGCATTTTTTGTCTTTCATGGCCTGTATTCTTTTGGGTTTTTAACTGTTGAACAAATTTGCAAATGTAATATTTTAACTCTTATCTTGAATTTTCAGTGA
>TRINITY_DN108213_c5_g2_i2 from sample A3 / Example unspliced isoform:CTTCTCTAGCCATGGAAAGTCTTCGATGGAAATGGAATTAAGGACTCTAGCCCTGGAACATATTTGATGGAAATGGAATTCAGCTTTTGTGGCCATAGACCAACAGCGTTATCGGTGGAGTTTGCAAAATCCGAGTCAGATGTGTTAATCCATGCACGTATACAGCGCGAACGTGGATGCCTCCCATTTGCCACGGTGCC
AAAAACGTTAACGGGAGTTTGCGAGGAAGGAAGGAATTTGTTAATCTAAAGAGGTGAAAAAGCAGGCACGGGAGTGGGCGAAGAATAGAGGTCGGTTGAGAACTCTGGAAAACTATTGTTCGGCTCTTTGGGTTCATGAAATTTGGGGATCCCGATATCTGCGAATGGTATTTGGTGATTTTATCACTGCAGAAACCCCG
GTTTTCTGAGGTGTACAAGACGTTATGGCGACTCCTTTGACAGGGCTTCAGCACGCCCAGGGACTCTTGGCTCCCATTGAACGGCCATTGGGGTTCGTGGATCCCTCAATGGCTTATGTGCAGCATTCCGCTCTGAAATTCCCCATTTTGGTTTTTCTCTACTTTCACAAGGCCATCAGATGCGAGCTCGGTACGCTTCA
CAGGGATGCTCTGGCTATTGAGAAGGAGAGCGACGGCGAGATTCGGACCCTTCTCGATCGGTACCACTTCTTGCGGGTTATTTACAAGCACCACAGCAATGCCGAGGACGAGGTCATCTTTCCAGCTCTTGATATGCGTGTAAAGAATGTGGCTCACACATATTCCTTGGAGCATAAAGGGGAAAGTGACCTGTTTGATC
AGGTGTTTGAATTATTAAATTCAGCCTTAAAGGACAATGACCATGGTTCTGTGAAATTGCGCCGAGAACTTGTTTGCTGCACGGAGGCCATTCAGACATCGCTCTGTCAACATATGTCGAAAGAAGAGGAGCAGGTTTTCCCACTGCTTATACAAGAATTTTCATTTGAAGAGCAGGCTGCACTAGTGTGGCAGTTCATG
TGCAGCATCCCTGTGAACCTGATTGAGGAATTTCTTCCATGGCTGACCTCTTCTCTTTCTTCTGATGAACGCCAGGATATGATCAAGTGTATGCATGAAATTGTTCCAAAAGAAAGGCTCCTTCAACAGGTTGTTTTTACCTGGCTGAAAGAAAAGTGCATCTCATCTGATGTGGAAGATGCTTTTAGAGATGAGAATAA
AGAAATAATAGGCTCTTCGGAAGGATTGCTATCTTCAAAAGCTGCCACAACAGTGGGCCAGAGTGGACAAAGCTCAAGAGATTGTTGTAAGATGATGTGCAAAAGGTCACATTTAGCCATAAATAATCATGCTGATAATAATGCTCATGTGGTGGTTCTGTTTCCAATTGATGAGATAATACACTGGCACAATGCAATTC
GAAAGGAATTAAAGGAACTTGCAGAGGAGGCACGTCGAATACAATTTTCAGGAGATTTTTCAAATTTGTCTTCATTTAATGACCGTTTACAGTTCCTTGCAGAAGTTTGCATTTTTCATAGTATTGCAGAGGATAAAGTTGTTTTTCCAGCTGTTGATGAGAAGGTCAAGAAGGGTGTTTCATTCATCAATGAGCATGCC
CAAGAAGAAAGTCAGTTTAATGATTTTCGTCACCTTATAGAAAGCATTCAGAATGCTGGAGTTAGTTCTAGTACATCTGAATTTTACAATAAGCTTTGTGCACAAGCTGATCAAATAGTAGAAACCATCGAAAAGCATTTTCTTAACGAGGAGAATGAGGTTCTTCCTCTCGCACGCAAACACTGCAGTGTTAAAGAGCA
ACGGAATCTTCTATACCAGAGCTTACGTGTGATGCCCCTAAAATTGTTAGAGCGTGTACTCCCATGGCTTGTAGCAATATTACAGGAAGAGGAGGCCAAGGATATGCTTCAAAATATGCGTATGGCAGCTCCTGCCTCTGATACAGCCCTAGTTACACTATTCTCTGGCTGGGCTTGTAAAGGACGCCCACAAAACAAGT
CTAAATCAGGGAGATTCATGTGTATTTCTTCAGATGCTGAAAATGATTGCCCTGTTAAAAGAATTAGTGAAATGGGATTGGAGATGAGTGGAAACTGTGATATTTGTGCCATTGTGTCAGATTGCAAAGGTAATACAGAATGTTCTTCCACATATGTGGATGAAAGGCCATTGAAGCGGCCTCACTGTAGCAAAACAGAG
AAAACAGAGAAAACAGAGAGAGATGACAACATTTCTGGTCAAAGCACTTTGGTAGGTGTTAAATGCTCATCAGAAACCCCCTGTGCAAGCCAGTCTTGCTGTGTTCCTGGATTAGGAGTGACCAGTAACAACCTGGTTATGGGAACAATCCCTACTGGAAGGAACTTGCGTTCGCTTTCCATGAATTCTCCAGTTGGTGC
CTCTTTAAGTTCTAGCCTGTTTGGTTGGGGAACTGATATTGGCTCATATGACTTTGGTCAAGCACCTAAGCCAATTGATCACATCTTTCAGTTTCACAAGGCTATTCGAAAAGATTTAGAATATTTGGATGTCGAATCAGCAAGGCTTATAGATTGTGATGAAACATTTCTTCGTCATTTTAGTGGACGCTTTCGTTTGC
TGTGGGGACTCTATCGAGCTCACAGCAATTCAGAAGATGAAATTGTCTTCCCAGCTTTAGAGGCCAAAGAGTCTCTTCACAATGTGAGCCATTCATACACTATTGATCACAAGCAGGAGGAACAGCTTTTCAATGATATATCTTGTGTTCTCTCTGAGCTTTCGCATCTGCATGAGAATTTGATTATAACTAGTCAGTTT
CCCAGTGCAGATAGGAACGAGACAAATCCCAGTGCCTCTGAACCTGCAGATTGGAAACTGAAGCATCAAGAACTTGCCGCAAAGCTTCAGCGTATGTGCAAATCTATAAGAGTCACGTTAGACCAACATGTATTTCGGGAAGAACTTGAGCTATGGCCATTGTTTGACAGTCATTTTACTGTAGAGGAACAGGATAAAAT
TGTAGGTCGCATAATTGGCACCACAGGAGCAGAAGTGCTTCAGTCAATGCTACCATGGGTGACAAGTGTTCTCACACAGGAAGAGCAAAATACAATGATGGATACTTGGCGGCAGGCTACTAAAAATACAATGTTTGATGAATGGCTTAGTGCTTGGTGGAAGGAATCTCCAGCATCAATTCCCCTATCAACATTTGTGT
CAGAGGAGGAATCTCCAGCATCAATTCCCCAATCAACATTTGTGTCAGAGGACGAAAATCTTACACCTTCAGGTCAAACCATTCATGATTGTTTTGAGCAAGGCAGCCAGAAGTTCAAGCCTGGGTGGAACGATATTTTCCGAATGAATCAGAAGGAGCTTGAGTCAGCAATACGCAAGGTGTCAAGTGATGCTTCCCTT
GATCCACGGCAAAAAGCATATCTTATTCAGAACCTCATGACAAGgtcagttcttcttacctcttgcttgtagttcttagtcttgaatatacatgtaataatgtacattaatgtggattcatgtgttggatggttttagCCGATGGATTGCTGCTCAGCAGAAGTTGCCCCAGTCAAGAGCAAGTCAGTCTGGGAATGGTG
AAGACATTCCTGGGCGCTGCCTGTCATATCGAGATTTAGATCAGAAAATATTTGGATGTGAGCATTACAAGCGGAACTGCAAACTGAAAGCTGGTTGTTGTAACCAACTTTTCACATGTAGATTCTGCCATGATAAAGTCAGTGACCACTCAATGGACAGGAAAGCAACAAAAGAGATGATGTGCATGAAATGCTTGCAG
ATCCAGCCTGTTGCATCAAATTGTGTAACTCCTTCCTGCAAAGAATTTTCTATGGCACAGTATTTCTGCAATATTTGCAAGTTTTTTGATGATGAAAGAGAAGTATACCATTGTCCATTCTGCAATTTGTGTCGTGTTGGAAAAGGACTGGGTATTGATTTCTTCCATTGCATGACTTGCAATGGTTGTATGTCAAAGAC
TCTGGCAGTGCATAGATGTCGAGAAAGGGGCCTTGAGTCAAACTGCCCAATATGCAGCGACTTTCTCTTCACTTCTAGTGCCCCTGTGAAAGCTCTTCCTTGTGGTCACTTTATGCATTCAGCTTGTTTCCAGGCATACACCTGCAGTAATTATACATGCCCAATATGTAGCAAGTCGTTGGGAGACATGGGTGTATATT
TCGGCATGCTTGATGCTTTGTTGTCTGCAGAAGAGCTTCCTGAGGAATATAAAGGGCGGACTCAGGATATTCTCTGTAATGATTGTGAAAAGAAAGGAATGGCTCCCTTTCATTGGTTATATCATAAGTGTAGTACATGCGGGTCATACAACACGAGGGTGATTTAAATTTGGATATGTTTTCGCTGATATTTGCTGAAG
CTTGTACCCAGATGTCTTACGTAACAGCTTCAAAAAATACGATGTGGTTCAGAGCGAAAAAAAAGAAGGGACTATTTTGCTTAATAATAAATGCATCCTCCATAAAAGTGCAGAATAGAAACGTACGAAGAATCTGTTGTATATAATGACCTCAATTCAGGAGTTCAAGGCCTTGCAGGCCACACAAGGGTTATAAATGG
TTATATATGGAATATGCAATTGCAGTTGTGCGATCTGTATATGGGACAGGATGGAGTCATTTTCCAATCTGGATGCACGTGTGCAAGCTTCTCTCTTTTGTAGGCCTTCTATTGTTAATTTTTGGCAGTTAGTGCTTCATTACAGAATCCGAAATTAAGTGTAATATATGTAAAATCAGTTTACAATGGCATCATGAAAT
GTATATTCCAAAGTATCATTCTTTTTGCCAAAGATGTGTTTTGGTAGCATTATTTTGGTGTCAGAATTATGGGTTTGTAAAAGGCTATGTTTTGAAGTTCAGTTTATACCAATCCTACTGTTCAATTAACAGGATGGTCAAATTTATTTTTTGTGTTATTAGCTTTTCGCCAGTAGTTCTAGAAGGCATGCCATATTTTA
GATCACATTTACTGCAAAAGTCATTTAGCGGAAGTGGAAATAGAAGCAAAGAAGCATGTGCATTTTGTAGTACAATGGAAGTGGAAATAGAAGCAAAGAAGCATGTGCATTGGGTAGTACCTGACATGGTTCTGCCATGTAATATTATTTTTGAAAGAGTGGCAGTGATGTAATAAGTAAACAAGAAAGCAAATTAATTG
AGGTTAGCCAATTTTCTGATGGGATAGAAACGGAGCCCCAAACACGTGTCCATGTTTATGAAAAAATGTTACACATGCATTGTTGCTTATTGCTTTCAATCTCATGACTAGTCAACGAGTGCTTATATTTCGACAAGAGGTCTTCTGAATCATCACGTACATATATATATTATCCTATATGAATTTCTT
Intron 2 GTTTGTTATC ... TGGTATGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 26.55 | 260 | 1 | 94 |
| A2 | 26.72 | 277 | 7 | 101 |
| A3 | 27.84 | 254 | 3 | 98 |
| A4 | 25.6 | 250 | 0 | 86 |
| A5 | 25.82 | 135 | 0 | 47 |
| A6 | 28.16 | 74 | 0 | 29 |
| A7 | 25.76 | 196 | 0 | 68 |
| A8 | 29.36 | 77 | 0 | 32 |
| A9 | 21.62 | 177.7 | 0 | 49 |
| A10 | 26.67 | 209 | 0 | 76 |
>TRINITY_DN108213_c5_g2_i3 from sample A3 / Example spliced isoformCTTCTCTAGCCATGGAAAGTCTTCGATGGAAATGGAATTAAGGACTCTAGCCCTGGAACATATTTGATGGAAATGGAATTCAGCTTTTGTGGCCATAGACCAACAGCGTTATCGGTGGAGTTTGCAAAATCCGAGTCAGATGTGTTAATCCATGCACGTATACAGCGCGAACGTGGATGCCTCCCATTTGCCACGGTGCC
AAAAACGTTAACGGGAGTTTGCGAGGAAGGAAGGAATTTGTTAATCTAAAGAGGTGAAAAAGCAGGCACGGGAGTGGGCGAAGAATAGAGGTCGGTTGAGAACTCTGGAAAACTATTGTTCGGCTCTTTGGGTTCATGAAATTTGGGGATCCCGATATCTGCGAATGGTATTTGGTGATTTTATCACTGCAGAAACCCCG
GTTTTCTGAGGTGTACAAGACGTTATGGCGACTCCTTTGACAGGGCTTCAGCACGCCCAGGGACTCTTGGCTCCCATTGAACGGCCATTGGGGTTCGTGGATCCCTCAATGGCTTATGTGCAGCATTCCGCTCTGAAATTCCCCATTTTGGTTTTTCTCTACTTTCACAAGGCCATCAGATGCGAGCTCGGTACGCTTCA
CAGGGATGCTCTGGCTATTGAGAAGGAGAGCGACGGCGAGATTCGGACCCTTCTCGATCGGTACCACTTCTTGCGGGTTATTTACAAGCACCACAGCAATGCCGAGGACGAGGTCATCTTTCCAGCTCTTGATATGCGTGTAAAGAATGTGGCTCACACATATTCCTTGGAGCATAAAGGGGAAAGTGACCTGTTTGATC
AGGTGTTTGAATTATTAAATTCAGCCTTAAAGGACAATGACCATGGTTCTGTGAAATTGCGCCGAGAACTTGTTTGCTGCACGGAGGCCATTCAGACATCGCTCTGTCAACATATGTCGAAAGAAGAGGAGCAGGTTTTCCCACTGCTTATACAAGAATTTTCATTTGAAGAGCAGGCTGCACTAGTGTGGCAGTTCATG
TGCAGCATCCCTGTGAACCTGATTGAGGAATTTCTTCCATGGCTGACCTCTTCTCTTTCTTCTGATGAACGCCAGGATATGATCAAGTGTATGCATGAAATTGTTCCAAAAGAAAGGCTCCTTCAACAGGTTGTTTTTACCTGGCTGAAAGAAAAGTGCATCTCATCTGATGTGGAAGATGCTTTTAGAGATGAGAATAA
AGAAATAATAGGCTCTTCGGAAGGATTGCTATCTTCAAAAGCTGCCACAACAGTGGGCCAGAGTGGACAAAGCTCAAGAGATTGTTGTAAGATGATGTGCAAAAGGTCACATTTAGCCATAAATAATCATGCTGATAATAATGCTCATGTGGTGGTTCTGTTTCCAATTGATGAGATAATACACTGGCACAATGCAATTC
GAAAGGAATTAAAGGAACTTGCAGAGGAGGCACGTCGAATACAATTTTCAGGAGATTTTTCAAATTTGTCTTCATTTAATGACCGTTTACAGTTCCTTGCAGAAGTTTGCATTTTTCATAGTATTGCAGAGGATAAAGTTGTTTTTCCAGCTGTTGATGAGAAGGTCAAGAAGGGTGTTTCATTCATCAATGAGCATGCC
CAAGAAGAAAGTCAGTTTAATGATTTTCGTCACCTTATAGAAAGCATTCAGAATGCTGGAGTTAGTTCTAGTACATCTGAATTTTACAATAAGCTTTGTGCACAAGCTGATCAAATAGTAGAAACCATCGAAAAGCATTTTCTTAACGAGGAGAATGAGGTTCTTCCTCTCGCACGCAAACACTGCAGTGTTAAAGAGCA
ACGGAATCTTCTATACCAGAGCTTACGTGTGATGCCCCTAAAATTGTTAGAGCGTGTACTCCCATGGCTTGTAGCAATATTACAGGAAGAGGAGGCCAAGGATATGCTTCAAAATATGCGTATGGCAGCTCCTGCCTCTGATACAGCCCTAGTTACACTATTCTCTGGCTGGGCTTGTAAAGGACGCCCACAAAACAAGT
CTAAATCAGGGAGATTCATGTGTATTTCTTCAGATGCTGAAAATGATTGCCCTGTTAAAAGAATTAGTGAAATGGGATTGGAGATGAGTGGAAACTGTGATATTTGTGCCATTGTGTCAGATTGCAAAGGTAATACAGAATGTTCTTCCACATATGTGGATGAAAGGCCATTGAAGCGGCCTCACTGTAGCAAAACAGAG
AAAACAGAGAAAACAGAGAGAGATGACAACATTTCTGGTCAAAGCACTTTGGTAGGTGTTAAATGCTCATCAGAAACCCCCTGTGCAAGCCAGTCTTGCTGTGTTCCTGGATTAGGAGTGACCAGTAACAACCTGGTTATGGGAACAATCCCTACTGGAAGGAACTTGCGTTCGCTTTCCATGAATTCTCCAGTTGGTGC
CTCTTTAAGTTCTAGCCTGTTTGGTTGGGGAACTGATATTGGCTCATATGACTTTGGTCAAGCACCTAAGCCAATTGATCACATCTTTCAGTTTCACAAGGCTATTCGAAAAGATTTAGAATATTTGGATGTCGAATCAGCAAGGCTTATAGATTGTGATGAAACATTTCTTCGTCATTTTAGTGGACGCTTTCGTTTGC
TGTGGGGACTCTATCGAGCTCACAGCAATTCAGAAGATGAAATTGTCTTCCCAGCTTTAGAGGCCAAAGAGTCTCTTCACAATGTGAGCCATTCATACACTATTGATCACAAGCAGGAGGAACAGCTTTTCAATGATATATCTTGTGTTCTCTCTGAGCTTTCGCATCTGCATGAGAATTTGATTATAACTAGTCAGTTT
CCCAGTGCAGATAGGAACGAGACAAATCCCAGTGCCTCTGAACCTGCAGATTGGAAACTGAAGCATCAAGAACTTGCCGCAAAGCTTCAGCGTATGTGCAAATCTATAAGAGTCACGTTAGACCAACATGTATTTCGGGAAGAACTTGAGCTATGGCCATTGTTTGACAGTCATTTTACTGTAGAGGAACAGGATAAAAT
TGTAGGTCGCATAATTGGCACCACAGGAGCAGAAGTGCTTCAGTCAATGCTACCATGGGTGACAAGTGTTCTCACACAGGAAGAGCAAAATACAATGATGGATACTTGGCGGCAGGCTACTAAAAATACAATGTTTGATGAATGGCTTAGTGCTTGGTGGAAGGAATCTCCAGCATCAATTCCCCTATCAACATTTGTGT
CAGAGGAGGAATCTCCAGCATCAATTCCCCAATCAACATTTGTGTCAGAGGACGAAAATCTTACACCTTCAGGTCAAACCATTCATGATTGTTTTGAGCAAGGCAGCCAGAAGTTCAAGCCTGGGTGGAACGATATTTTCCGAATGAATCAGAAGGAGCTTGAGTCAGCAATACGCAAGGTGTCAAGTGATGCTTCCCTT
GATCCACGGCAAAAAGCATATCTTATTCAGAACCTCATGACAAGCCGATGGATTGCTGCTCAGCAGAAGTTGCCCCAGTCAAGAGCAAGTCAGTCTGGGAATGGTGAAGACATTCCTGGGCGCTGCCTGTCATATCGAGATTTAGATCAGAAAATATTTGGATGTGAGCATTACAAGCGGAACTGCAAACTGAAAGCTGG
TTGTTGTAACCAACTTTTCACATGTAGATTCTGCCATGATAAAGTCAGTGACCACTCAATGGACAGGAAAGCAACAAAAGAGATGATGTGCATGAAATGCTTGCAGATCCAGCCTGTTGCATCAAATTGTGTAACTCCTTCCTGCAAAGAATTTTCTATGGCACAGTATTTCTGCAATATTTGCAAGTTTTTTGATGATG
AAAGAGAAGTATACCATTGTCCATTCTGCAATTTGTGTCGTGTTGGAAAAGGACTGGGTATTGATTTCTTCCATTGCATGACTTGCAATGGTTGTATGTCAAAGACTCTGGCAGTGCATAGATGTCGAGAAAGGGGCCTTGAGTCAAACTGCCCAATATGCAGCGACTTTCTCTTCACTTCTAGTGCCCCTGTGAAAGCT
CTTCCTTGTGGTCACTTTATGCATTCAGCTTGTTTCCAGGCATACACCTGCAGTAATTATACATGCCCAATATGTAGCAAGTCGTTGGGAGACATGGGTGTAAGTCATCTTGTTTCTCTGTTTATTTTGTTTTCTCCATTTTAAAGCTTTGTGCTATACTATTGTCAATAGGTGGGAGCTTTCTTACAATAAAAGTTTAG
ACAATAACGGTGTATCTTTGTTATATAGGCCTTACTATATCTGCCTGCTTGATTGCCATTTGTTATGCAGAAAAGTATAGGGAAAATGACTATACTTCAGCCAACGTAATTCCTATGACATAAATGATTTTTCTAAGAGTTAACAATGAAGCCATTCTACTGCTTCCTTTACACTTATGAAGAGATGCATGAAACTAGCA
CAAGTAGAGATTGCCCTCCGAATAGGTCTCATAATATGTGTAATATCTATGGCATGAATGATGACAGTTTTAAGCTTTAGCAGAAATGACAATTGTGATCTTGAATGTTTATCTTTCCAACTAGTTGGTCTGTAGACCACATTTGATTTGTTCTTTTCGCGTGCCTGTAATTTTGGTTAGAGTTCATTAAAAGATTTGTA
TAATTTTATTTAGAGCTGGTAAAAGTCTACAAACTGTAATGCATTTTTTGTCTTTCATGGCCTGTATTCTTTTGGGTTTTTAACTGTTGAACAAATTTGCAAATGTAATATTTTAACTCTTATCTTGAATTTTCAGTGA
>TRINITY_DN108213_c5_g2_i5 from sample A3 / Example unspliced isoform:CTTCAAAATATGCGTATGGCAGgtttgttatcgggaatcaccatgacatgtttcaataattatgaaaaggattttattagcaaagtgtggagttgatacatccattgctaaatgtcattcatgagaaggtttgattctaacaaacttgcaaaaactagtatagcaagtctttgcatattgagagtgcaaaacataatctc
ttaatggcaagctttatgtgtaaaatattgaaagattaaatgttcctaatgatttggataattataaacagttgcttggattataattcaattatccttgaatagtgttaatctaatccatcagccaaaaatttgcaggcactagtggattaaccttgaagctagagtgcatatttttcttttgtttgcatgaaatgttt
gtttttgcaaaataatcgggaaaaccatttgtcagttgtagttaaaattgtatggtgcatcaatgtaatatgctatatcttattaacagattctattttcttttattatctcaaagttgttgcttttccttgatttggtatgcagCTCCTGCCTCTGATACAGCCCTAGTTACACTATTCTCTGGCTGGGCTTGTAAAGG
ACGCCCACAAAACAAGTCTAAATCAGGGAGATTCATGTGTATTTCTTCAGATGCTGAAAATGATTGCCCTGTTAAAAGAATTAGTGAAATGGGATTGGAGATGAGTGGAAACTGTGATATTTGTGCCATTGTGTCAGATTGCAAAGGTAATACAGAATGTTCTTCCACATATGTGGATGAAAGGCCATTGAAGCGGCCTC
ACTGTAGCAAAACAGAGAAAACAGAGAAAACAGAGAGAGATGACAACATTTCTGGTCAAAGCACTTTGGTAGGTGTTAAATGCTCATCAGAAACCCCCTGTGCAAGCCAGTCTTGCTGTGTTCCTGGATTAGGAGTGACCAGTAACAACCTGGTTATGGGAACAATCCCTACTGGAAGGAACTTGCGTTCGCTTTCCATG
AATTCTCCAGTTGGTGCCTCTTTAAGTTCTAGCCTGTTTGGTTGGGGAACTGATATTGGCTCATATGACTTTGGTCAAGCACCTAAGCCAATTGATCACATCTTTCAGTTTCACAAGGCTATTCGAAAAGATTTAGAATATTTGGATGTCGAATCAGCAAGGCTTATAGATTGTGATGAAACATTTCTTCGTCATTTTAG
TGGACGCTTTCGTTTGCTGTGGGGACTCTATCGAGCTCACAGCAATTCAGAAGATGAAATTGTCTTCCCAGCTTTAGAGGCCAAAGAGTCTCTTCACAATGTGAGCCATTCATACACTATTGATCACAAGCAGGAGGAACAGCTTTTCAATGATATATCTTGTGTTCTCTCTGAGCTTTCGCATCTGCATGAGAATTTGA
TTATAACTAGTCAGTTTCCCAGTGCAGATAGGAACGAGACAAATCCCAGTGCCTCTGAACCTGCAGATTGGAAACTGAAGCATCAAGAACTTGCCGCAAAGCTTCAGCGTATGTGCAAATCTATAAGAGTCACGTTAGACCAACATGTATTTCGGGAAGAACTTGAGCTATGGCCATTGTTTGACAGTCATTTTACTGTA
GAGGAACAGGATAAAATTGTAGGTCGCATAATTGGCACCACAGGAGCAGAAGTGCTTCAGTCAATGCTACCATGGGTGACAAGTGTTCTCACACAGGAAGAGCAAAATACAATGATGGATACTTGGCGGCAGGCTACTAAAAATACAATGTTTGATGAATGGCTTAGTGCTTGGTGGAAGGAATCTCCAGCATCAATTCC
CCTATCAACATTTGTGTCAGAGGAGGAATCTCCAGCATCAATTCCCCAATCAACATTTGTGTCAGAGGACGAAAATCTTACACCTTCAGGTCAAACCATTCATGATTGTTTTGAGCAAGGCAGCCAGAAGTTCAAGCCTGGGTGGAACGATATTTTCCGAATGAATCAGAAGGAGCTTGAGTCAGCAATACGCAAGGTGT
CAAGTGATGCTTCCCTTGATCCACGGCAAAAAGCATATCTTATTCAGAACCTCATGACAAGCCGATGGATTGCTGCTCAGCAGAAGTTGCCCCAGTCAAGAGCAAGTCAGTCTGGGAATGGTGAAGACATTCCTGGGCGCTGCCTGTCATATCGAGATTTAGATCAGAAAATATTTGGATGTGAGCATTACAAGCGGAAC
TGCAAACTGAAAGCTGGTTGTTGTAACCAACTTTTCACATGTAGATTCTGCCATGATAAAGTCAGTGACCACTCAATGGACAGGAAAGCAACAAAAGAGATGATGTGCATGAAATGCTTGCAGATCCAGCCTGTTGCATCAAATTGTGTAACTCCTTCCTGCAAAGAATTTTCTATGGCACAGTATTTCTGCAATATTTG
CAAGTTTTTTGATGATGAAAGAGAAGTATACCATTGTCCATTCTGCAATTTGTGTCGTGTTGGAAAAGGACTGGGTATTGATTTCTTCCATTGCATGACTTGCAATGGTTGTATGTCAAAGACTCTGGCAGTGCATAGATGTCGAGAAAGGGGCCTTGAGTCAAACTGCCCAATATGCAGCGACTTTCTCTTCACTTCTA
GTGCCCCTGTGAAAGCTCTTCCTTGTGGTCACTTTATGCATTCAGCTTGTTTCCAGGCATACACCTGCAGTAATTATACATGCCCAATATGTAGCAAGTCGTTGGGAGACATGGGTGTATATTTCGGCATGCTTGATGCTTTGTTGTCTGCAGAAGAGCTTCCTGAGGAATATAAAGGGCGGACTCAGGATATTCTCTGT
AATGATTGTGAAAAGAAAGGAATGGCTCCCTTTCATTGGTTATATCATAAGTGTAGTACATGCGGGTCATACAACACGAGGGTGATTTAAATTTGGATATGTTTTCGCTGATATTTGCTGAAGCTTGTACCCAGATGTCTTACGTAACAGCTTCAAAAAATACGATGTGGTTCAGAGCGAAAAAAAAGAAGGGACTATTT
TGCTTAATAATAAATGCATCCTCCATAAAAGTGCAGAATAGAAACGTACGAAGAATCTGTTGTATATAATGACCTCAATTCAGGAGTTCAAGGCCTTGCAGGCCACACAAGGGTTATAAATGGTTATATATGGAATATGCAATTGCAGTTGTGCGATCTGTATATGGGACAGGATGGAGTCATTTTCCAATCTGGATGCA
CGTGTGCAAGCTTCTCTCTTTTGTAGGCCTTCTATTGTTAATTTTTGGCAGTTAGTGCTTCATTACAGAATCCGAAATTAAGTGTAATATATGTAAAATCAGTTTACAATGGCATCATGAAATGTATATTCCAAAGTATCATTCTTTTTGCCAAAGATGTGTTTTGGTAGCATTATTTTGGTGTCAGAATTATGGGTTTG
TAAAAGGCTATGTTTTGAAGTTCAGTTTATACCAATCCTACTGTTCAATTAACAGGATGGTCAAATTTATTTTTTGTGTTATTAGCTTTTCGCCAGTAGTTCTAGAAGGCATGCCATATTTTAGATCACATTTACTGCAAAAGTCATTTAGCGGAAGTGGAAATAGAAGCAAAGAAGCATGTGCATTTTGTAGTACAATG
GAAGTGGAAATAGAAGCAAAGAAGCATGTGCATTGGGTAGTACCTGACATGGTTCTGCCATGTAATATTATTTTTGAAAGAGTGGCAGTGATGTAATAAGTAAACAAGAAAGCAAATTAATTGAGGTTAGCCAATTTTCTGATGGGATAGAAACGGAGCCCCAAACACGTGTCCATGTTTATGAAAAAATGTTACACATG
CATTGTTGCTTATTGCTTTCAATCTCATGACTAGTCAACGAGTGCTTATATTTCGACAAGAGGTCTTCTGAATCATCACGTACATATATATATTATCCTATATGAATTTCTT
Intron 3 GTAGGTAATT ... ATATGCGTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 3.51 | 334.1 | 7 | 12 |
| A2 | 5.26 | 238.6 | 4 | 13 |
| A3 | 5.18 | 240.7 | 0 | 13 |
| A4 | 3.12 | 220.2 | 3 | 7 |
| A5 | 1.24 | 80.4 | 1 | 1 |
| A6 | 0.16 | 626.7 | 1 | 1 |
| A7 | 0 | 715.7 | 0 | 0 |
| A8 | 0.12 | 861.1 | 0 | 1 |
| A9 | 0.16 | 622.8 | 0 | 1 |
| A10 | 0.24 | 419.7 | 0 | 1 |
>TRINITY_DN118321_c5_g2_i3 from sample A1 / Example spliced isoformGTCTTCGATGGAAATGGAATTAAGGACTCTAGCCCTGGAACATATTTGATGGAAATGGAATTCAGCTTTTGTGGCCATAGACCAACAGCGTTATCGGTGGAGTTTGCAAAATCCGAGTCAGATGTGTTAATCCATGCACGTATACAGCGCGAACGTGGATGCCTCCCATTTGCCACGGTGCCAAAAACGTTAACGGGAGT
TTGCGAGGAAGGAAGGAATTTGTTAATCTAAAGAGGTGAAAAAGCAGGCACGGGAGTGGGCGAAGAATAGAGGTCGGTTGAGAACTCTGGAAAACTATTGTTCGGCTCTTTGGGTTCATGAAATTTGGGGATCCCGATATCTGCGAATGGTATTTGGTGATTTTATCACTGCAGAAACCCCGGTTTTCTGAGGTGTACAA
GACGTTATGGCGACTCCTTTGACAGGGCTTCAGCACGCCCAGGGACTCTTGGCTCCCATTGAACGGCCATTGGGGTTCGTGGATCCCTCAATGGCTTATGTGCAGCATTCCGCTCTGAAATTCCCCATTTTGGTTTTTCTCTACTTTCACAAGGCCATCAGATGCGAGCTCGGTACGCTTCACAGGGATGCTCTGGCTAT
TGAGAAGGAGAGCGACGGCGAGATTCGGACCCTTCTCGATCGGTACCACTTCTTGCGGGTTATTTACAAGCACCACAGCAATGCCGAGGACGAGGTCATCTTTCCAGCTCTTGATATGCGTGTAAAGAATGTGGCTCACACATATTCCTTGGAGCATAAAGGGGAAAGTGACCTGTTTGATCAGGTGTTTGAATTATTAA
ATTCAGCCTTAAAGGACAATGACCATGGTTCTGTGAAATTGCGCCGAGAACTTGTTTGCTGCACGGAGGCCATTCAGACATCGCTCTGTCAACATATGTCGAAAGAAGAGGAGCAGGTTTTCCCACTGCTTATACAAGAATTTTCATTTGAAGAGCAGGCTGCACTAGTGTGGCAGTTCATGTGCAGCATCCCTGTGAAC
CTGATTGAGGAATTTCTTCCATGGCTGACCTCTTCTCTTTCTTCTGATGAACGCCAGGATATGATCAAGTGTATGCATGAAATTGTTCCAAAAGAAAGGCTCCTTCAACAGGTTGTTTTTACCTGGCTGAAAGAAAAGTGCATCTCATCTGATGTGGAAGATGCTTTTAGAGATGAGAATAAAGAAATAATAGGCTCTTC
GGAAGGATTGCTATCTTCAAAAGCTGCCACAACAGTGGGCCAGAGTGGACAAAGCTCAAGAGATTGTTGTAAGATGATGTGCAAAAGGTCACATTTAGCCATAAATAATCATGCTGATAATAATGCTCATGTGGTGGTTCTGTTTCCAATTGATGAGATAATACACTGGCACAATGCAATTCGAAAGGAATTAAAGGAAC
TTGCAGAGGAGGCACGTCGAATACAATTTTCAGGAGATTTTTCAAATTTGTCTTCATTTAATGACCGTTTACAGTTCCTTGCAGAAGTTTGCATTTTTCATAGTATTGCAGAGGATAAAGTTGTTTTTCCAGCTGTTGATGAGAAGGTCAAGAAGGGTGTTTCATTCATCAATGAGCATGCCCAAGAAGAAAGTCAGTTT
AATGATTTTCGTCACCTTATAGAAAGCATTCAGAATGCTGGAGTTAGTTCTAGTACATCTGAATTTTACAATAAGCTTTGTGCACAAGCTGATCAAATAGTAGAAACCATCGAAAAGCATTTTCTTAACGAGGAGAATGAGGTTCTTCCTCTCGCACGCAAACACTGCAGTGTTAAAGAGCAACGGAATCTTCTATACCA
GAGCTTACGTGTGATGCCCCTAAAATTGTTAGAGCGTGTACTCCCATGGCTTGTAGCAATATTACAGGAAGAGGAGGCCAAGGATATGCTTCAAAATATGCGTATGGCAGCTCCTGCCTCTGATACAGCCCTAGTTACACTATTCTCTGGCTGGGCTTGTAAAGGACGCCCACAAAACAAGTCTAAATCAGGGAGATTCA
TGTGTATTTCTTCAGATGCTGAAAATGATTGCCCTGTTAAAAGAATTAGTGAAATGGGATTGGAGATGAGTGGAAACTGTGATATTTGTGCCATTGTGTCAGATTGCAAAGGTAATACAGAATGTTCTTCCACATATGTGGATGAAAGGCCATTGAAGCGGCCTCACTGTAGCAAAACAGAGAAAACAGAGAAAACAGAG
AGAGATGACAACATTTCTGGTCAAAGCACTTTGGTAGGTGTTAAATGCTCATCAGAAACCCCCTGTGCAAGCCAGTCTTGCTGTGTTCCTGGATTAGGAGTGACCAGTAACAACCTGGTTATGGGAACAATCCCTACTGGAAGGAACTTGCGTTCGCTTTCCATGAATTCTCCAGTTGGTGCCTCTTTAAGTTCTAGCCT
GTTTGGTTGGGGAACTGATATTGGCTCATATGACTTTGGTCAAGCACCTAAGCCAATTGATCACATCTTTCAGTTTCACAAGGCTATTCGAAAAGATTTAGAATATTTGGATGTCGAATCAGCAAGGCTTATAGATTGTGATGAAACATTTCTTCGTCATTTTAGTGGACGCTTTCGTTTGCTGTGGGGACTCTATCGAG
CTCACAGCAATTCAGAAGATGAAATTGTCTTCCCAGCTTTAGAGGCCAAAGAGTCTCTTCACAATGTGAGCCATTCATACACTATTGATCACAAGCAGGAGGAACAGCTTTTCAATGATATATCTTGTGTTCTCTCTGAGCTTTCGCATCTGCATGAGAATTTGATTATAACTAGTCAGTTTCCCAGTGCAGATAGGAAC
GAGACAAATCCCAGTGCCTCTGAACCTGCAGATTGGAAACTGAAGCATCAAGAACTTGCCGCAAAGCTTCAGCGTATGTGCAAATCTATAAGAGTCACGTTAGACCAACATGTATTTCGGGAAGAACTTGAGCTATGGCCATTGTTTGACAGTCATTTTACTGTAGAGGAACAGGATAAAATTGTAGGTCGCATAATTGG
CACCACAGGAGCAGAAGTGCTTCAGTCAATGCTACCATGGGTGACAAGTGTTCTCACACAGGAAGAGCAAAATACAATGATGGATACTTGGCGGCAGGCTACTAAAAATACAATGTTTGATGAATGGCTTAGTGCTTGGTGGAAGGAATCTCCAGCATCAATTCCCCTATCAACATTTGTGTCAGAGGAGGAATCTCCAG
CATCAATTCCCCAATCAACATTTGTGTCAGAGGACGAAAATCTTACACCTTCAGGTCAAACCATTCATGATTGTTTTGAGCAAGGCAGCCAGAAGTTCAAGCCTGGGTGGAACGATATTTTCCGAATGAATCAGAAGGAGCTTGAGTCAGCAATACGCAAGGTGTCAAGTGATGCTTCCCTTGATCCACGGCAAAAAGCA
TATCTTATTCAGAACCTCATGACAAGCCGATGGATTGCTGCTCAGCAGAAGTTGCCCCAGTCAAGAGCAAGTCAGTCTGGGAATGGTGAAGACATTCCTGGGCGCTGCCTGTCATATCGAGATTTAGATCAGAAAATATTTGGATGTGAGCATTACAAGCGGAACTGCAAACTGAAAGCTGGTTGTTGTAACCAACTTTT
CACATGTAGATTCTGCCATGATAAAGTCAGTGACCACTCAATGGACAGGAAAGCAACAAAAGAGATGATGTGCATGAAATGCTTGCAGATCCAGCCTGTTGCATCAAATTGTGTAACTCCTTCCTGCAAAGAATTTTCTATGGCACAGTATTTCTGCAATATTTGCAAGTTTTTTGATGATGAAAGAGAAGTATACCATT
GTCCATTCTGCAATTTGTGTCGTGTTGGAAAAGGACTGGGTATTGATTTCTTCCATTGCATGACTTGCAATGGTTGTATGTCAAAGACTCTGGCAGTGCATAGATGTCGAGAAAGGGGCCTTGAGTCAAACTGCCCAATATGCAGCGACTTTCTCTTCACTTCTAGTGCCCCTGTGAAAGCTCTTCCTTGTGGTCACTTT
ATGCATTCAGCTTGTTTCCAGGCATACACCTGCAGTAATTATACATGCCCAATATGTAGCAAGTCGTTGGGAGACATGGGTGTATATTTCGGCATGCTTGATGCTTTGTTGTCTGCAGAAGAGCTTCCTGAGGAATATAAAGGGCGGACTCAGGATATTCTCTGTAATGATTGTGAAAAGAAAGGAATGGCTCCCTTTCA
TTGGTTATATCATAAGTGTAGTACATGCGGGTCATACAACACGAGGGTGATTTAAATTTGGATATGTTTTCGCTGATATTTGCTGAAGCTTGTACCCAGATGTCTTACGTAACAGCTTCAAAAAATACGATGTGGTTCAGAGCGAAAAAAAAGAAGGGACTATTTTGCTTAATAATAAATGCATCCTCCATAAAAGTGCA
GAATAGAAACGTACGAAGAATCTGTTGTATATAATGACCTCAATTCAGGAGTTCAAGGCCTTGCAGGCCACACAAGGGTTATAAATGGTTATATATGGAATATGCAATTGCAGTTGTGCGATCTGTATATGGGACAGGATGGAGTCATTTTCCAATCTGGATGCACGTGTGCAAGCTTCTCTCTTTTGTAGGCCTTCTAT
TGTTAATTTTTGGCAGTTAGTGCTTCATTACAGAATCCGAAATTAAGTGTAATATATGTAAAATCAGTTTACAATGGCATCATGAAATGTATATTCCAAAGTATCATTCTTTTTGCCAAAGATGTGTTTTGGTAGCATTATTTTGGTGTCAGAATTATGGGTTTGTAAAAGGCTATGTTTTGAAGTTCAGTTTATACCAA
TCCTACTGTTCAATTAACAGGATGGTCAAATTTATTTTTTGTGTTATTAGCTTTTCGCCAGTAGTTCTAGAAGGCATGCCATATTTTAGATCACATTTACTGCAAAAGTCATTTAGCGGAAGTGGAAATAGAAGCAAAGAAGCATGTGCATTTTGTAGTACAATGGAAGTGGAAATAGAAGCAAAGAAGCATGTGCATTG
GGTAGTACCTGACATGGTTCTGCCATGTAATATTATTTTTGAAAGAGTGGCAGTGATGTAATAAGTAAACAAGAAAGCAAATTAATTGAGGTTAGCCAATTTTCTGATGGGATAGAAACGGAGCCCCAAACACGTGTCCATGTTTATGAAAAAATGTTACACATGCATTGTTGCTTATTGCTTTCAATCTCATGACTAGT
CAACGAGTGCTTATATTTCGACAAGAGGTCTTCTGAATCATCACGTACATATATATATTATCCTATATGAATTTCTTTACCCTCCAATTTGGATTAGATGTTTTTATAGTTATTGGAGTTGTTTCTTGAAGTTTTGAACACAGCCTGTGTCTACTTATTTTTAGAGCTTTTATGATCTCGGCTTTTGGTCACTTATTCTT
TAGAATCAAAATAGTTGTGGTCAAATCACAAGAAAGAACAACCCTTTGGAAGGAAAAAAGTTTGTAAAGACTATTTGTTGTTTCCAAAACCAGGAATCGTTTAAAGGGAAATTAATCCTATTACCAAAAGTCACCATTTACATAAATCATAAAAGCG
>TRINITY_DN118321_c5_g2_i2 from sample A1 / Example unspliced isoform:TATGCATTCAGCTTGTTTCCAGgtaggtaattcatttctcaagcaacattatttcagtaattgtttgtctaacttaactaaatgattttcattttgcttgttttgatatgcgtagGCATACACCTGCAGTAATTATACATGCCCAATATGTAGCAAGTCGTTGGGAGACATGGGTGTAAGTCATCTTGTTTCTCTGTTTA
TTTTGTTTTCTCCATTTTAAAGCTTTGTGCTATACTATTGTCAATAGGTGGGAGCTTTCTTACAATAAAAGTTTAGACAATAACGGTGTATCTTTGTTATATAGGCCTTACTATATCTGCCTGCTTGATTGCCATTTGTTATGCAGAAAAGTATAGGGAAAATGACTATACTTCAGCCAACGTAATTCCTATGACATAAA
TGATTTTTCTAAGAGTTAACAATGAAACCATTCCACTGCTTCCTTTACACTTATGAAGAGAT