NA ----> NA
Intron 1 GTCTGTCCAA ... TGTGGTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 11.11 | 24 | 3 | 0 |
| A2 | 32.37 | 10.5 | 5 | 1 |
| A3 | 31.2 | 25.5 | 11 | 3 |
| A4 | 32.51 | 12.5 | 6 | 0 |
| A5 | 29.76 | 4.8 | 2 | 0 |
| A6 | 21.71 | 29 | 8 | 2 |
| A7 | 21.84 | 57.8 | 16 | 3 |
| A8 | 25.26 | 27 | 9 | 3 |
| A9 | 26.19 | 45.3 | 16 | 5 |
| A10 | 19.3 | 50.8 | 12 | 0 |
>TRINITY_DN42999_c0_g2_i3 from sample A7 / Example spliced isoformTTTTAATTAACAATCCCCCTATACTCTGCGGCTGAGGTAACAATCCCCTCAAACATGTTCCCATAGCATCTAGGTACTGCTCTTATTACGATTGTTCAAATCCCCGATCTTGTTGACGAGTAGCAGAAGCGCAGCAATGCCCAGGAGACGAGTTCGATCCTCCCATACCTCTGAAAATGTGGTTGATTCCGACGTCAAAG
CGCGAAAGTTTCCAATCAACAAACGCAAATCATCACTCCTTTTCGCTTCCAAATTCAAATGGATCCTAATTTGCGGCTGCTCCCTATTTATACTCTTACTGCTTGTCCACACTTTTCAGCTTCTACCTGGCCCCTGGTTCCATGGCAGCCAGCATGTTGTTCCGGTTGGCGACTCAGAGCTTTCTGTTTATGAGAAAGGA
CTTGTGAAATCCGACATTACGTATCAACAAGTGCTGGCCGAAACAGAGAAGCCCTGGATCAACACGACCCACAGGCATTTCAATTCTATGGTTCTTGCATATGTTACTCCCTGGAATAGCAAAGGTTATGACATGGCCATAAAATTTCGTGCCAAGCTTACACATGTGTCACCTGTCTGGTATCAGTTGAAGAGAATTGG
GACAGAGCTACAGTTATTTGGTAAACATGATGCTGATCAGCAGTGGATGGCTCGAGTTCGTAAGAATGGGTTGCCATTGATACTCCCTAGAGTTGTATTGGAAGTATCACCCATAGAATTGTTGACGAAGAAGAGGGAAAGGAAGCAAGCATTTGATCTTATTGTTTCTGAATGCAAAGACATGGGATTTGATGGTGTTG
TGCTCGAGGCCTGGTCGCAATGGGCAGCTTATGGTATTCTAAAAGATCCCAACTTGCGTGAAATGGCACTGCAACTTGTTCAAGAGCTTGGATCCATGCTACACACTACAAAAGCAGTAGAGGGGCTAGATCGTAACTTGCAGTTGGTGTTAGTCATTCCCCCACCAAATTCAATTGAGAACAATCCTGACATGTTTACA
TCAACTGATATGGCAAGGTTAAGCAACAATGTTGATGGATTTTCACTTATGACATATGATTTTTCAAGTACATATCGCCCTGGTCCAAATGCACCCATTGGTTGGGTGCGTGCATGTTTGCAACTTTTGCTTCCTGTTTCAGCTGCAAAGCACCAAAGGGATACAAAAATAGATAGGAAGACCACCAATTATCAGCTGGC
AGCAAAAATCTTAATGGGTATAAATTTCTATGGAAATGATTATGTTCTTCCAAGAGGTGGTGCACCTATCCTTGGTCATGAATATCTCTCCTTGCTTAGAACACACAAGCCGCAGTTGTTTTGGGATGAGCAGAGCATGGAGCATTATTTTGATTATGAGGAACGACTGAACAGGCATAGAGTCTTTTACCCTTCTTTGA
AGTCAATTTCATTGCGGCTGGAAGAGGCACAAGCATGGGGTGTTGGTCTATCAATCTGGGAGATAGGTCAAGGACTGGATTATTTCTTTGATCTGCTGTAATTTCTCTAAATTTTCTTGTTGTAATAGTGGAATTAAAGTACTCCTTAACGGATTTGATTTCTGTTGTTTGTTGTTTAATTTTACACCTAGGAAAATTAG
GGATGAGGTTTATGATCATTTGTGATGTGGACCTCCAAGGCTTGCAAATCAGAGGTTTTGCTGTTTGTCTCAAAAGACTTGTTTTGAGTTAATTTTGAAGCTTGCAGCTCAATTCAGGCCAACAAAGGAATTGATCTCTTCTGAGAAGAAATAAGGCAATGAGCTATTTGTAATAGTCATATTTAATAAGAATAGTCCTA
TACGAGTTAAGCTAAAGCTCATGAATTTGAGCAATGATTGATACAGAATATAATATATATAGCTGTTGATAGCTCATAACCTTCCATAAAAGGAAGGGCAAAGATTCATTTCAATTTATAACCGTCTTACCTGTCTGCAT
>TRINITY_DN42999_c0_g2_i1 from sample A7 / Example unspliced isoform:TTTTAATTAACAATCCCCCTATACTCTGCGGCTGAGGTAACAATCCCCTCAAACATGTTCCCATAGCATCTAGGTACTGCTCTTATTACGATTGTTCAAATCCCCGATCTTGTTGACGAGTAGCAGAAGCGCAGCAATGCCCAGGAGACGAGTTCGATCCTCCCATACCTCTGAAAATGTGGTTGATTCCGACGTCAAAG
CGCGAAAGTTTCCAATCAACAAACGCAAATCATCACTCCTTTTCGCTTCCAAATTCAAATGGATCCTAATTTGCGGCTGCTCCCTATTTATACTCTTACTGCTTGTCCACACTTTTCAGCTTCTACCTGGCCCCTGGTTCCATGGCAGCCAGCATGTTGTTCCGGTTGGCGACTCAGAGCTTTCTGTTTATGAGAAAGGA
CTTGTGAAATCCGACATTACGTATCAACAAGTGCTGGCCGAAACAGAGAAGCCCTGGATCAACACGACCCACAGGCATTTCAATTCTATGGTTCTTGCATATGTTACTCCCTGGAATAGCAAAGGTTATGACATGGCCATAAAATTTCGTGCCAAGCTTACACATGTGTCACCTGTCTGGTATCAGTTGAAGAGgtctgt
ccaaatggcgagactggttgaatgatttgcattctttgcaatgattaatctttctaatttactttatgcaattgtggttcagAATTGGGACAGAGCTACAGTTATTTGGTAAACATGATGCTGATCAGCAGTGGATGGCTCGAGTTCGTAAGAATGGGTTGCCATTGGTATACCAATCCTTGTAATGCTGTGCTCTGTAA
TTATCTGAATGGGATTCTGTAGACAGCTTATGCGTATATTTTTGTGCTTCGATCTCTTTTTGAGTTGCATATCTCATGTTTGGGTTACATGTTATCTTGAGC
Intron 2 GTATAAATTT ... CTTCCAAGAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 68.6 | 19 | 36 | 47 |
| A2 | 55.56 | 8 | 9 | 11 |
| A3 | 66.67 | 6 | 14 | 10 |
| A4 | 74.55 | 7 | 20 | 21 |
| A5 | 89.47 | 1 | 8 | 9 |
| A6 | 64.38 | 39 | 74 | 67 |
| A7 | 65.93 | 46 | 70 | 108 |
| A8 | 68.13 | 51 | 106 | 112 |
| A9 | 62.68 | 53 | 82 | 96 |
| A10 | 72.12 | 23 | 59 | 60 |
>TRINITY_DN40224_c0_g2_i1 from sample A9 / Example spliced isoformCTGAAATAGTTGTTGAATTGACTGCTGGAGAATCTGCTTCTGCAGCATCTGCTCATCATGTGCCTCTGCTGTAGGCAAACAAATACACAGCAACAGATACTCCCTAGAGTTGTATTGGAAGTATCACCCATAGAATTGTTGACGAAGAAGAGGGAAAGGAAGCAAGCATTTGATCTTATTGTTTCTGAATGCAAAGACAT
GGGATTTGATGGTGTTGTGCTCGAGGCCTGGTCGCAATGGGCAGCTTATGGTATTCTAAAAGATCCCAACTTGCGTGAAATGGCACTGCAACTTGTTCAAGAGCTTGGATCCATGCTACACACTACAAAAGCAGTAGAGGGGCTAGATCGTAACTTGCAGTTGGTGTTAGTCATTCCCCCACCAAATTCAATTGAGAACA
ATCCTGACATGTTTACATCAACTGATATGGCAAGGTTAAGCAACAATGTTGATGGATTTTCACTTATGACATATGATTTTTCAAGTGCATATCGCCCTGGTCCAAATGCACCCATTGGTTGGGTGCGTGCATGTTTGCAACTTTTGCTTCCTGTTTCAGCTGCAAAGCACCAAAGGGATACAAAAATAGATAGGAAGACC
ACCAATTATCAGCTGGCAGCAAAAATCTTAATGGGTGGTGCACCTATCCTTGGTCATGAATATCTCTCCTTGCTTAGAACACACAAGCCGCAGTTGTTTTGGGATGAGCAGAGCATGGAGCATTATTTTGATTATGAGGAACGACTGAACAGGCATAGAGTCTTTTACCCTTCTTTGAAGTCAATTTCATTGCGGCTGGA
AGAGGCACAAGCATGGGGTGTTGGTCTATCAATCTGGGAGATAGGTCAAGGACTGGATTATTTCTTTGATCTGCTGTAATTTCTCTAAATTTTCTTGTTGTAATAGTGGAATTAAAGTACTCCTTAACGGATTTGATTTCTGTTGTTTGTTGTTTAATTTTACACCTAGCAAAATTAGGGATGAGGTTTATGATCATTTG
TGATGTGGACCTCCAAGGCTTGCAAATCAGAGGTTTTGCTGTTTGTCTCAAAAGACTTGTTTTGAGTTAATTTTGAAGCTTGCAGCTCAATTCAGGCCAACAAAGGAATTGATCTCTTCTGAGAAGAAATAAGGCAATGGGCTATTTGTAATAGTCATATTTAATAAGAATAGTCCTATACGAGTTAAGCTAAAGCTCAT
GAATTTGAGCAATGATTGATACAGAATATAATATATATAGCTGTTGATAGCTCATAACCTTCCATAAAAGGAAGGGCAAAGATTCATTTCAATTTATAACCGTCTTACCTGTCTGCATATGATTTAATTCACTATTTATGATATAAAGTCGAA
>TRINITY_DN40224_c0_g2_i3 from sample A9 / Example unspliced isoform:TTTTAATTAACAATCCCCCTATACTCTGCGGCTGAGGTAACAATCCCCTCAAACATGTTCCCATAGCATCTAGGTACTGCTCTTATTACGATTGTTCAAATCCCCGATCTTGTTGACGAGTAGCAGAAGCGCAGCAATGCCCAGGAGACGAGTTCGATCCTCCCATACCTCTGAAAATGTGGTTGATTCCGACGTCAAAG
CTCGAAAGTTTCCAATCAACAAACGCAAATCATCACTCCTTTTCGCTTCCAAATTCAAATGGATCCTAATTTGCGGCTGCTCCCTATTTATACTCTTACTGCTTGTCCACACTTTTCAGCTTCTACCTGGCCCCTGGTTCCATGGCAGCCAGCATGTTGTTCCGGTTGGCGACTCAGAGCTTTCTGTTTATGAGAAAGGA
CTTGTGAAATCCGACATTACGTATCAACAAGTGCTGGCCGAAACAGAGAAGCCCTGGATCAACACGACCCACAGGCATTTCAATTCTATGGTTCTTGCATATGTTACTCCCTGGAATAGCAAAGGTTATGACATGGCCATAAAATTTCGTGCCAAGCTTACACATGTGTCACCTGTCTGGTATCAGTTGAAGAGAATTGG
GACAGAGCTACAGTTATTTGGTAAACATGATGCTGATCAGCAGTGGATGGCTCGAGTTCGTAAGAATGGGTTGCCATTGATACTCCCTAGAGTTGTATTGGAAGTATCACCCATAGAATTGTTGACGAAGAAGAGGGAAAGGAAGCAAGCATTTGATCTTATTGTTTCTGAATGCAAAGACATGGGATTTGATGGTGTTG
TGCTCGAGGCCTGGTCGCAATGGGCAGCTTATGGTATTCTAAAAGATCCCAACTTGCGTGAAATGGCACTGCAACTTGTTCAAGAGCTTGGATCCATGCTACACACTACAAAAGCAGTAGAGGGGCTAGATCGTAACTTGCAGTTGGTGTTAGTCATTCCCCCACCAAATTCAATTGAGAACAATCCTGACATGTTTACA
TCAACTGATATGGCAAGGTTAAGCAACAATGTTGATGGATTTTCACTTATGACATATGATTTTTCAAGTGCATATCGCCCTGGTCCAAATGCACCCATTGGTTGGGTGCGTGCATGTTTGCAACTTTTGCTTCCTGTTTCAGCTGCAAAGCACCAAAGGGATACAAAAATAGATAGGAAGACCACCAATTATCAGCTGGC
AGCAAAAATCTTAATGGgtataaatttctatggaaatgattatgttcttccaagagGTGGTGCACCTATCCTTGGTCATGAATATCTCTCCTTGCTTAGAACACACAAGCCGCAGTTGTTTTGGGATGAGCAGAGCATGGAGCATTATTTTGATTATGAGGAACGACTGAACAGGCATAGAGTCTTTTACCCTTCTTTGA
AGTCAATTTCATTGCGGCTGGAAGAGGCACAAGCATGGGGTGTTGGTCTATCAATCTGGGAGATAGGTCAAGGACTGGATTATTTCTTTGATCTGCTGTAATTTCTCTAAATTTTCTTGTTGTAATAGTGGAATTAAAGTACTCCTTAACGGATTTGATTTCTGTTGTTTGTTGTTTAATTTTACACCTAGCAAAATTAG
GGATGAGGTTTATGATCATTTGTGATGTGGACCTCCAAGGCTTGCAAATCAGAGGTTTTGCTGTTTGTCTCAAAAGACTTGTTTTGAGTTAATTTTGAAGCTTGCAGCTCAATTCAGGCCAACAAAGGAATTGATCTCTTCTGAGAAGAAATAAGGCAATGGGCTATTTGTAATAGTCATATTTAATAAGAATAGTCCTA
TACGAGTTAAGCTAAAGCTCATGAATTTGAGCAATGATTGATACAGAATATAATATATATAGCTGTTGATAGCTCATAACCTTCCATAAAAGGAAGGGCAAAGATTCATTTCAATTTATAACCGTCTTACCTGTCTGCATATGATTTAATTCACTATTTATGATATAAAGTCGAA