sp|Q40253|L6_LINUS ----> Disease resistance protein L6

Intron 1 GTGGGTAACC ... CCCTATGCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	52.23	4.2	5.6	3.6
A2	45.11	2.4	1.2	3.2
A3	51.99	7.4	7.6	8
A4	43.32	6	8.4	0.8
A5	21.91	3	1.8	0
A6	33.88	19.4	12.2	6
A7	27.66	31.6	8	8.4
A8	38.37	25.4	12	12.8
A9	31.17	25.4	6	10.2
A10	24.16	25.8	7.6	6.8

>TRINITY_DN45061_c0_g1_i4 from sample A6 / Example spliced isoform

AGGCCCAAACCCTTGCCCTCTTTGGAATCCAACGCGATTATGATCACCTCCCCCTCGCCCTACCTTCTCTTCTGCCCGCTGGCTCTCCCAGTCTTCATCGTTGCCTATGTGGGGAGGACGCTTGTGCCTCTGCGTCTTCCTTCATGGGGTGTTCCCCATAGACTATTTGATGATTCAGCTTCTTCCCTGGCAATGGCAAC
TGCAATCGAATTAGGAAGGAGTAGATACAAGAAATCCGAAATCTACGACGTGTTTCTGAGCTTCAAAGGACGCGATGTGAGGAGAGGGTTTGCAGATCATCTCTACCACGCCCTCACCGACTCTGGTTTCCGCGTATTCCTGAACATCCACCATCTCGGCCAGAGCGGTGAGGACATCTTTGCGAGCCTACAGCACGCAA
TTGATAAGGTGAGTCGCATGCTGATTCTCATATTCTCCCCGAATTAAAGAGAATTTGCCTTGTGCCTCAAAGAAGCCTCGCTTACCGCGCGGCTAGGGCTACTACAAGTGAAGGAGGAGTCGGCCATCGCCATTCCTCTCTTTTACAATGAGAGTCTTGTACAAGTTCGACATCAAGAACTATTCGACATCAGGAACCAT
CTGACAGCCCATTTGGTGCAGCATTCAAAAGACATGAAAAGCAGTAGGAGGGTGAATGGAAGGATGCTCTCTTCCTGTCGTCTATCTGAGTGGTCGCTCCAAAGAGACACCAATGGATATGAAGCAGTGCTGGTGAAGCGTGTGGTTAAAGAAGTGGATAAATAATGTAAGAGACGGAACCCTGGCCTTCAGTTTAATTC
TACTGCTCGACTATGGCTGTGACCATCATGAAGGAAGGATCTTTTTTTAAATAAATCCGCGTAGCTTAATGGCGATCAAGTTTTCTGTAATATCAGAAATAAATATAAATTAAAGCCGAAATATATTTGTAATTTTTCTCATTTGATTGGGAGTTATTTTCTGGTGTCAAATATCATTTTGTCTGATCGTTTTATTTACC
TGG

>TRINITY_DN45061_c0_g1_i13 from sample A6 / Example unspliced isoform:

AGGCCCAAACCCTTGCCCTCTTTGGAATCCAACGCGATTATGATCACCTCCCCCTCGCCCTACCTTCTCTTCTGCCCGCTGGCTCTCCCAGTCTTCATCGTTGCCTATGTGGGGAGGACGCTTGTGCCTCTGCGTCTTCCTTCATGGGGTGTTCCCCATAGACTATTTGATGATTCAGCTTCTTCCCTGGCAATGGCAAC
TGCAATCGAATTAGGAAGGAGTAGATACAAGAAATCCGAAATCTACGACGTGTTTCTGAGCTTCAAAGGACGCGATGTGAGGAGAGGGTTTGCAGATCATCTCTACCACGCCCTCACCGACTCTGGTTTCCGCGTATTCCTGAACATCCACCATCTCGGCCAGAGCGGTGAGGACATCTTTGCGAGCCTACAGCACGCAA
TTGATAAGGTGAGTCGCATGCTGATTCTCATATTCTCCCCGAATTAAAGAGAATTTGCCTTGTGCCTCAAAGAAGCCTCGCTTACCGCGCGGCTAGGGCTACTACAAGTGAAGGAGGAGTCGGCCATCGCCATTCCTCTCTTTTACAATGAGAGTCTTGTACAAGTTCGACATCAAGAACTATTCGACATCAGGAACCAT
CTGACAGCCCATTTGGTGCAGCATTCAAAAGACATGAAAAGCAGTAGGAGGGTGAATGGAAGGATGCTCTCTTCCTGTCGTCTATCTGAGTGGTCGCTCCAAAGAGACACCAATGGgtgggtaacccactatatcctatgcttgctgtgttctacttatttattcatctatatgcttctccttgaactctaaattatacc
ctatgcagATATGAAGCAGTGCTGGTGAAGCGTGTGGTTAAAGAAGT

Intron 2 GTGAGTCGCA ... TTTGGTGCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	74.36	5	16	13
A2	72.73	3	15	1
A3	57.89	8	17	5
A4	75	3	14	4
A5	71.43	1	2	3
A6	53.53	23	42	11
A7	76.79	13	56	30
A8	63.24	17	41	17.5
A9	79.31	9	44	25
A10	79.59	5	22	17

>TRINITY_DN48843_c0_g1_i1 from sample A7 / Example spliced isoform

GGCAACTGTAATCGAATTAGGAAGGAGTAGATACAAGAAATCCGAAATCTACGACGTGTTTCTGAGCTTCAAAGGACGCGATGTGAGGAGAGGGTTTGCAGATCATCTCTACCACGCACTCACCGACTCTGGTTTCCGCGTATTCCTGAACATCCACCATCTCGGCCAGAGCGGTGAAGACATCTTTGCGAGCCTGCAGC
ACGCAATTGATGAGCATTCAAAAGACATGAAAAGCAGTAGGAGGGTGAATGGAAGGATGCTCTCTTCCTGTCGTCAGTTTGAGTGGTCGCTCCAAAGAGACACCAATGGTGCTGGTGAAGCGTGTGGTTAAAGAAGTGGATAAATAATGTAAGAGACGGAACCTTGGCCTTCAGTTTAATTCTACTTCTCGACTATGGCT
GTGACCATCATGAAGGAAGGATCTTCTTTTAAATAAATCCGCGTAGCTTAATGGCGATCAAGTTTTCTGTAATATCAGAAATAAATATAAATTAAAGCCGAAATATATTTGTAATTTTTCTCATTTGATTGGGAGTTATTTTCTGGTGTCAAATATCATTTTGTCTGATCGTTTTATTTACCTGGTTAAATGAAATTTTG
ATTTAAGCTATTTGTACAGAGCGTAGGCTAAATGGCCATTCAATATCAAATCCG

>TRINITY_DN48843_c0_g1_i3 from sample A7 / Example unspliced isoform:

GGCAACTGTAATCGAATTAGGAAGGAGTAGATACAAGAAATCCGAAATCTACGACGTGTTTCTGAGCTTCAAAGGACGCGATGTGAGGAGAGGGTTTGCAGATCATCTCTACCACGCACTCACCGACTCTGGTTTCCGCGTATTCCTGAACATCCACCATCTCGGCCAGAGCGGTGAAGACATCTTTGCGAGCCTGCAGC
ACGCAATTGATGAGgtgagtcgcatgctgattcccatattctgtctaaattaaacagaatttgccttgtgcctcaaagaagcctcgcttactgcacggcaagggctactacaagtgaaggaggagtcggccatcgccattcctctcttttacaatgagagtcttgtacaagttcgacatcaggaaccatctgacagccca
tttggtgcagCATTCAAAAGACATGAAAAGCAGTAGGAGGGTGAATGGAAGGATGCTCTCTTCCTGTCGTCAGTTTGAGTGGTCGCTCCAAAGAGACACCAATGGATATGAAGCAGTGCTGGTGAAGCGTGTGGTTAAAGAAGTGGATAAATAATGTAAGAGACGGAACCTTGGCCTTCAGTTTAATTCTACTTCTCGAC
TATGGCTGTGACCATCATGAAGGAAGGATCTTCTTTTAAATAAATCCGC