sp|Q94BR1|MRF1_ARATH ----> MA3 DOMAIN-CONTAINING TRANSLATION REGULATORY FACTOR 1
Intron 1 GTGCCGTTCC ... ATATTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 25.48 | 174 | 59 | 60 |
| A2 | 20.85 | 112 | 33 | 26 |
| A3 | 23.88 | 153 | 51 | 45 |
| A4 | 24.86 | 133 | 43 | 45 |
| A5 | 20.73 | 109 | 32 | 25 |
| A6 | 19.48 | 62 | 13 | 17 |
| A7 | 17.51 | 106 | 31 | 14 |
| A8 | 28.89 | 16 | 3 | 10 |
| A9 | 18.44 | 73 | 14 | 19 |
| A10 | 14.06 | 110 | 19 | 17 |
>TRINITY_DN45303_c1_g9_i3 from sample A8 / Example spliced isoformTTTCTACTTACGTCCAATCGTGAATGCGTTTTCTTCCGTGCGTGTCTACGTCTTCTTTACGAATTCTCTCTCATTTTTCCTTTGAACGGTTTGCATAAGAACTCTCTCTGGTTCAACACTGGCGCGCGACGCCGGCCCGCGGAAATTTCGCCGTTGACAGATCAGGCAATCGAATCTCTTCGACTGAACATTTTTCACTC
GTTGCCGGGGGCTCGAGGCTCGAGCAAAGGTCCTAATCTTTCCAGTGAGCCTCGAGCGGGATCCGTCTCCGGATCGGTTTGTCTGTAAATGCTTTTTACTGTAAATTATAACCTGTTCTGATCGGACAGTTCTCCGCTAAAAGAACGAGGAAGTAGATATATAGAGTCCTGGTTCTGATTGACCCTGTGGAGGTTTGGAC
AATGGCTTCCAATGATGGATTCTTGACAGATGAACAGCGAGAGCTTTTGAGATCCGCATCCCTGGGTAGGGATTCGGGGCATTCTTCAAGATTCCCCAAATCTCCAAGGCCTGGACCTGAACTTCAAGGGAAACATATCTCAGTAGGTTCGAAAAACCATGCTTTAATTGATGGGTTCTTGACAGATGAACAGCGAGAGC
ATTTGAGATGCTCATCCCTGGGTAGGGATTCGGTGCTTTCTTTAAGATCCCCCAAATCTCTAATGTCTGGACCTGAAGGGAAACATGTTGTAGTCGGTGCAAAAAACCACGCTGGAGGTGCTGTGAACAAGCATGAGAAGCGTTCGAACTCAGGGAAAAATGGCCGTCCCAAAAAGAGTGGATGTGGTGGCAAAGGCACC
TGGGGAGGATTACTGGACACGGATGGGGACGTGCATGTTGATCGCAATGACCCAAACTATGATAGTGAGGAGGTAAACCATTTTGCTTTCGAGTATTTCTTGAGCCCATTCACTCACTATCTAGATTTGTGCATCTTTGTCCTCGATGTCAGTGTTTCGTGTTCATCAGTATTTTCCTTTTCATCGTTGCTTTAATGCAA
TTTAAGGTCCTAATCTGCAATGGCGATGATTGGTTTGCTTTAATGTCTTTTGAGTCTTGACCTTGAAACCAAATATCATAAGCATTGTAAAAACTAATCATCGGCTTCCGAATATTCCCGATTTTCCTTGTCTTTGTGATCTTTTCAGATCCAATTTTATGCTCGCTGCTATTTTGCAATTTTTCTGTTAAGTTTCTTTC
TGGACCCTTGGCGATATATTCCCGGAAACAGTATTTGCAGCATTGGTATAAACTGATATGGTTAGAACATTTAGGGAGCCC
>TRINITY_DN45303_c1_g9_i2 from sample A8 / Example unspliced isoform:TTTCTACTTACGTCCAATCGTGAATGCGTTTTCTTCCGTGCGTGTCTACGTCTTCTTTACGAATTCTCTCTCATTTTTCCTTTGAACGGTTTGCATAAGAACTCTCTCTGGTTCAACACTGGCGCGCGACGCCGGCCCGCGGAAATTTCGCCGTTGACAGATCAGGCAATCGAATCTCTTCGACTGAACATTTTTCACTC
GTTGCCGGGGGCTCGAGGCTCGAGCAAAGGTCCTAATCTTTCCAGTGAGCCTCGAGCGGGATCCGTCTCCGGATCGGTTTGTCTGTAAATGCTTTTTACTGTAAATTATAACCTGTTCTGATCGGACAGTTCTCCGCTAAAAGgtgccgttccttcctctgccttaattttaatctttctaattttgattctcgtagtgg
atttcttcgaaaccggcaaaaatgcaaatgcgcgaaatttctcagaaataaatcaagaatgacattagtttgaaggatgaacccttagtatcttggtcagcggtggcgcgagatctcgcactgtctgattctggacttcatttggggtcccagattttttattttaagacgaattgcagtagtaaatgagacttgtatca
gagtatatttttgaaatttattttgattgaacacaatatttggtggacagggccatttcccctttttgaaattattaaacgaattcgttgcgcttttcactgttctttgcgaatcttcttgaaacggggtcaggaatttgcttctcattttcaatctcgaaattttgtctaccgagagaatgttcatgtaacgttgttta
tcaaattaaaattaaaatgaaataaaagccgacggtcaatgcccggttgaaattaaaaaaaatcgaaaaaatcgaccttttttgtttgtaaattaattaaattaacttttaaaaaacatatatccatcttaaccgctgtctgtcttttttgatctgctcggtggttagtatggatctatgctagtgtaatacagcatagg
atttgcgatctgaaatatggtgttcgacttttattgaacattcggctgtttctagatgcaccgacaaattacctttggttagtcttttggggtttatctaagaaaagtagtgctagcgttagttattttgatgctgtatgattgttgcttatatttgcagAACGAGGAAGTAGATATATAGAGTCCTGGTTCTGATTGAC
CCTGTGGAGGTTTGGACAATGGCTTCCAATGATGGATTCTTGACAGATGAACAGCGAGAGCTTTTGAGATCCGCATCCCTGGGTAGGGATTCGGGGCATTCTTCAAGATTCCCCAAATCTCCAAGGCCTGGACCTGAACTTCAAGGGAAACATATCTCAGTAGGTTCGAAAAACCATGCTTTAATTGATGGGTTCTTGAC
AGATGAACAGCGAGAGCATTTGAGATGCTCATCCCTGGGTAGGGATTCGGTGCTTTCTTTAAGATCCCCCAAATCTCTAATGTCTGGACCTGAAGGGAAACATGTTGTAGTCGGTGCAAAAAACCACGCTGGAGGTGCTGTGAACAAGCATGAGAAGCGTTCGAACTCAGGGAAAAATGGCCGTCCCAAAAAGAGTGGAT
GTGGTGGCAAAGGCACCTGGGGAGGATTACTGGACACGGATGGGGACGTGCATGTTGATCGCAATGACCCAAACTATGATAGTGAGGAGGTAAACCATTTTGCTTTCGAGTATTTCTTGAGCCCATTCACTCACTATCTAGATTTGTGCATCTTTGTCCTCGATGTCAGTGTTTCGTGTTCATCAGTATTTTCCTTTTCA
TCGTTGCTTTAATGCAATTTAAGGTCCTAATCTGCAATGGCGATGATTGGTTTGCTTTAATGTCTTTTGAGTCTTGACCTTGAAACCAAATATCATAAGCATTGTAAAAACTAATCATCGGCTTCCGAATATTCCCGATTTTCCTTGTCTTTGTGATCTTTTCAGATCCAATTTTATGCTCGCTGCTATTTTGCAATTTT
TCTGTTAAGTTTCTTTCTGGACCCTTGGCGATATATTCCCGGAAACAGTATTTGCAGCATTGGTATAAACTGATATGGTTAGAACATTTAGGGAGCCC