sp|Q9SEX2|KTNA1_ARATH ----> Katanin p60 ATPase-containing subunit A1
Intron 1 GTATATTTCA ... TCTTATGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 12.46 | 233.8 | 34.4 | 32.2 |
| A2 | 12.14 | 249.8 | 39.9 | 29.4 |
| A3 | 11.06 | 300.9 | 34 | 41.2 |
| A4 | 12.72 | 237.3 | 33.9 | 35.5 |
| A5 | 11.03 | 142.4 | 11.4 | 23.9 |
| A6 | 8.65 | 413.9 | 30.8 | 48 |
| A7 | 8.02 | 572.4 | 44.2 | 56 |
| A8 | 9.2 | 318.5 | 24.6 | 40.3 |
| A9 | 7.8 | 566.4 | 47.9 | 48.6 |
| A10 | 7.75 | 493.7 | 30.1 | 53.1 |
>TRINITY_DN125281_c1_g1_i8 from sample A1 / Example spliced isoformATTTACGTGCCACACTGAACTGGGCTGGACTTTAGTCTGGCGGCACGAGTTCGAATCTGTGGGGGAGCTCGTCATCATCGTAATACGGGATCCCCTGAACATTTCCCACAGCCATGACGGACGAGCCAGCCATTACCAGATGGAAATTTGAGGATTTTGAGGAAGTGTATGATGCGAAATTCGGAGTTAAACGGGAAAAT
GCGGGGGCTAATGGACATTCTCGAGTGGAAAACGGTCAGGAGGGTTTTGATGAACGTACGAGTGTGGCAGTCAATGGAAATGGCAGCAATACAAGGAACTCTGCGGGTTTGGCCGTCTATGAACAGTTTTTATGCCAGGAAAACAGCGGAACAGAGTTTGCTGGTGTATCTGTAGGGAGATCGGCAGCGAAACCGTGAGA
GGCTTTGTCGTTTTTTTAATTTTTATTCTTTAATTTAACTTTTCTTTTTGCTCTTTCCAGCTTTTTCTTTGCAAAAAATTCTTCCAAGGGGTGACATCATTACGGATCTATATTTTCTCTGCCTGCTCTTCCTTTGATATTTATGATTTTCATGGTGTTTTGACATAATAAATCAATTTCCCAGTGTTGTCGAATTTTTT
TTCCCAGCGTTAGTGTGATAGTGGCATCTGTTTTTATTATAAATATGGTGGTTACATGAAAATGTGCATATGGTTATATGCAATGGTTTTTCTACTTTTTATTTTGATATTTTGTTTAGTTATTGACATTCACCTTTTCGCTGTTGGTCAGAAAATGACCAATGCCGGAATTGGATAAAATGTTGTCCCCAGTATGCATT
GGAAAACTTTTACAGTAATGGCTATAAATTAATGTTGAAAAACAGCGTTTTTCTGGAACTTATTGGAAAAATAAGTCCTGAGTGAACATTGTATCATTCCACCATGTACAAGCTTCATTACTCTTCCGTCCAGTGAAGGCCCTGTGAGAGGTTGAACTACTTTTTATGCTTGTGAAGGGCAAATTGAACCTGTTAGAGGT
TGTTGATTTTGGCTGAAATGTATTTTTTTTTGAGTTGTGATCCAAAAAGGCATCGGAGGAATGACAAACTTTGGGATATTAGGTCTCAATGAGTGTGATAGATTAGAAGGAGACTACAATTTCACCCCTTGAAAGTGCAGGTTGCATATGGTTATGGAGGAGATTGATCTTTAGGGCACAATCTAGGGAAAAGTAACAGT
TCTTTCCAATCCTCAACAATTATCTCTGTAAGAGAAGAGGGTTGCTAAAGCAAAAGGGATTCTTTTGGATTTTATAAAGGACCACCTGATTCCTCACAGGCAAGGGAAATCAACAAAGGAAATGTTTGATGCATTGACAAGTTTGTATCAAAGTGTCAATATTGTCAGGAAGATGCTCTTAAAGGACAGATTCACACAAA
CATGCATGAGTAATTCAGACATTGTGGAGGGCTACCTTATGAAGATCAACGATCTTAGAAAACAACTCTTTGCTATTGATATGAAGATCAAAGATGAGGAATTAGTGCCTTTTGTACTTTATGGTTTCTCCCTTATTTGGGAAGCCTTTGTTCAGGGTGTATGTGCTCTGGAAAACCTCCCAACTTATGAGAAACCTTGG
GGCATCATTGTCTAAGAAGAAACAACACAAGAAACAATGCCAGGTCGAATAGAAGAGGACCAAGAGTTTACGCTTATCAGGAAGTGAGGAAAGCTGGAAAGAAAAGAGGACCCACAAGGGTAAAGAAGGAGGAGACATCTTCTTCAGATCATGGTACTAAGGATCAGAGTCATGTGACTTGTTACAAGTGTCACAAGAAA
GGACACTTTGCTAATCAATGTTCCAAGAAGAGGAAAGGTAAGCAACAACATCAGTAGTTTGCATGGAGCGCAAATGCTTCAGCTGGAGTGGATGAATCAGCAACCAAGCTTGAAATTGCCTTCATTAGGTTTCATGCCTTTCTACCAATACCACTTCTGGTGTTGGTTGGTATGTGGACAATGGAATGTCATGGCATATG
ACTTTCAGCAGGAAAAATTTCAGCAAGTTTCAAGAACAAGATGGCCATACAAGTGGAGTTGGGTGATGTTGCTACATACTTGGTGGCTGGAATCAACACCATCTCCTTCAAGATGCCTTTAGGTGATGTTCTCAATTTGCATGTTCTTTTTGTACCTAAATTAAGTAAGAATCTCTTCTTAGTGTCAATGATTAAAGATA
TGAAATGCATAGTTGAGTTTAATTATCCGTGGTTCACCATAAAAGATTGTAGTCAAGAACCTCATTGGTTTTTCGCCAAAGGTGTGTGAAGTAGGTCTTTAAAGGCCCCTTACTAATATCACAAAACATGAAGCAGTCTCTGCAAGTTGTGGCAAATTGTGGCGGTTGGAGACCTTTACTACATGATAGTGGAAAATTGT
GTGCGTTGTGACACAAGCGTCTTGGTCACTTGCACTATGGAGCCCTTCCTCTCTTGAAAGGTACAGTGCAGGGATTGCCAGAATTCAAGATAGTACAAATCAATGTGTACAAAGGATGTGGACTTGATAAGCATTCTAACTCTAGTTTTCCATCTAGTGAGCAAAGATTGAAAGAGATTCTAGAGTTGATACATTTCGAT
GTATGCCAACCTATGTCTTCCTATTTATTAAAAGGTAATTTATATCATGTTTTTTTCATTGATGATTCCTCTTGGAAATCTTGGATTTATTGAAGAAAACTAAGGATGAAGTATTCATTATATTCAGCGAATTCAAAGTTTTGGTTGAAAATTAGACAAGGAAGAGGATCAAGGTGTTTTGGTGCAATAATGAAGGAGTG
TACACCTTCAAGGAGTTTGATGCCTTTTGCATGCAAGCAATGATTAAGAAGGAACTTATAGTACCATACAACCCATAGCATAATGGGGGTGCTAAATGTAAGAATATATCCATCATTGAGACAATAAAGGCCATGCTTCATGACATGGACTTGCCCATGTATCTTCGGGCAGAAGCATGCATTATTGTTGTCTACATCTT
GAACCATTGTCCACATAATATTTGAAAGGACAAAACACTAGAGGGGGGGGTTTCACTAGTGAGAAGCCCTAG
>TRINITY_DN125281_c1_g1_i7 from sample A1 / Example unspliced isoform:AGAAGTCTGGCGGCACGAGTTCGAATATGTGGGGGAGCTCGTCGTCATCGTAATACGGGATCCCCTGAACATTTCCCACAGCCATGACGGACGAGCCAGCCATTACCAGATGGAAATTTGAGgtatatttcattccttttgccttcttttagcaatcgtattctctactgatcgcattaaattccaatatcagcaccagt
cttcaaataagttcaaagcatctgctgaaatccaaatcaaaggatcgcaggatcgattctcgcggcttcctgttacagccttttttggttgcgtatttttatcttatgcagGATTTTGAGGAAGTGTATGATGCGAAATTCGGAGTTAAACGGGAAAATGCGGGGTCTAATGGACATTCTCTAGTAGAAAACGGTCAGGA
GGGTTTTGATGAACGTACGAGTGTGGCAGTCAATGGAAATGGCAGCAATACAAGGAACTCTGCGGGTTTGGCCGTCTATGAACAGTTTTTATGCCAGGTAGGTCAGCGGACTTTGTAATTCCGTAATCGTTGTCACTTTGATTAGAAATAAAAAGGGAAATTTATAGGATGTCGAGTAGATCGTTGGATTCTTCAGTTTG
TGAAGCTCACAATTTCTTTCTGATTAAAAGCACAGAAAACTAATATACAGAAAATAATAATATAGGTGTAACTTTAGCAACCTCAAACACGCATTAGAGAGAAAATTGCAGACTAATTCTTCAAACTATGCTGTAAACTTCTGAAGTGGAATGTGCTGTATTGGATTCAGGAAAACAGCGGAACAGAGTTTGCTGGTGTA
TCTGTAGGGAGATCGGCAGCGAAACCGTGAGAGGCTTTGTCGTTTTTTTAATTTTTATTCTTTAATTTAACTTTTCTTTTTGCTCTTTCCAGCTTTTTCTTTGCAAAAAATTCTTCCAAGGGGTGACATCATTACGGATCTATATTTTCTCTGCCTGCTCTTCCTTTGATATTTATGATTTTCATGGTGTTTTGACATAA
TAAATCAATTTCCCAGTGTTGTCGGATTTTTTTCCCCAGCGTTAGTGTGATAGTGGCATCTGTTTTTATTATAAATATGGTGGTTACATGAAAATGTGCATATGGTTATATGCAATGGTTTTTCTACTTTTTATTTTGATATTTTGTTTAGTTATTGACATTCACCTTTTCGCTGTTGGTCAGAAAATGACCAATGCCGG
AATTGGATAAAATGTTGTCCCCAGTATGCATTGGAAAACTTTTACAGTAATGGCTATAAATTAATGTTGAAAAACAGCGTTTTTCTGGAACTTATTGGAAAAATAAGTCCTGAGTGAACATTGTATCATTCCACCATGTACAAGCTTCATTACTCTTCCGTCCAGTGAAGGCCCTGTGAGAGGTTGAACTACTTTTTATG
CTTGTGAAGGGCAAATTGAACCTGTTAGAGGTTGTTGATTTTGGCTGAAATGTATTTTTTTTTGAGTTGTGATCCAAAAAGGCATCGGAGGAATGACAAACTTTGGGATATTAGGTCTCAATGAGTGTGATAGATTAGAAGGAGACTACAATTTCACCCCTTGAAAGTGCAGGTTGCATATGGTTATGGAGGAGATTGAT
CTTTAGGGCACAATCTAGGGAAAAGTAACAGTTCTTTCCAATCCTCAACAATTATCTCTGTAAGAGAAGAGGGTTGCTAAAGCAAAAGGGATTCTTTTGGATTTTATAAAGGACCACCTGATTCCTCACAGGCAAGGGAAATCAACAAAGGAAATGTTTGATGCATTGACAAGTTTGTATCAAAGTGTCAATATTGTCAG
GAAGATGCTCTTAAAGGACAGATTCACACAAACATGCATGAGTAATTCAGACATTGTGGAGGGCTACCTTATGAAGATCAACGATCTTAGAAAACAACTCTTTGCTATTGATATGAAGATCAAAGATGAGGAATTAGTGCCTTTTGTACTTTATGGTTTCTCCCTTATTTGGGAAGCCTTTGTTCAGGGTGTATGTGCTC
TGGAAAACCTCCCAACTTATGAGAAACCTTGGGGCATCATTGTCTAAGAAGAAACAACACAAGAAACAATGCCAGGTCGAATAGAAGAGGACCAAGAGTTTACGCTTATCAGGAAGTGAGGAAAGCTGGAAAGAAAAGAGGACCCACAAGGGTAAAGAAGGAGGAGACATCTTCTTCAGATCATGGTACTAAGGATCAGA
GTCATGTGACTTGTTACAAGTGTCACAAGAAAGGACACTTTGCTAATCAATGTTCCAAGAAGAGGAAAGGTAAGCAACAACATCAGTAGTTTGCA
Intron 2 GTAGGTCAGC ... TTGGATTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 34.6 | 214 | 113 | 18 |
| A2 | 36.88 | 204.3 | 119 | 10 |
| A3 | 29.32 | 234.8 | 97 | 15 |
| A4 | 36.91 | 205.5 | 120 | 7 |
| A5 | 31.11 | 104.3 | 47 | 11 |
| A6 | 27.96 | 451.5 | 174 | 21 |
| A7 | 31.5 | 644.6 | 295 | 17 |
| A8 | 29.01 | 344.6 | 140 | 13 |
| A9 | 30.89 | 554.9 | 247 | 20 |
| A10 | 31.86 | 528.2 | 246 | 14 |
>TRINITY_DN125281_c1_g1_i8 from sample A1 / Example spliced isoformATTTACGTGCCACACTGAACTGGGCTGGACTTTAGTCTGGCGGCACGAGTTCGAATCTGTGGGGGAGCTCGTCATCATCGTAATACGGGATCCCCTGAACATTTCCCACAGCCATGACGGACGAGCCAGCCATTACCAGATGGAAATTTGAGGATTTTGAGGAAGTGTATGATGCGAAATTCGGAGTTAAACGGGAAAAT
GCGGGGGCTAATGGACATTCTCGAGTGGAAAACGGTCAGGAGGGTTTTGATGAACGTACGAGTGTGGCAGTCAATGGAAATGGCAGCAATACAAGGAACTCTGCGGGTTTGGCCGTCTATGAACAGTTTTTATGCCAGGAAAACAGCGGAACAGAGTTTGCTGGTGTATCTGTAGGGAGATCGGCAGCGAAACCGTGAGA
GGCTTTGTCGTTTTTTTAATTTTTATTCTTTAATTTAACTTTTCTTTTTGCTCTTTCCAGCTTTTTCTTTGCAAAAAATTCTTCCAAGGGGTGACATCATTACGGATCTATATTTTCTCTGCCTGCTCTTCCTTTGATATTTATGATTTTCATGGTGTTTTGACATAATAAATCAATTTCCCAGTGTTGTCGAATTTTTT
TTCCCAGCGTTAGTGTGATAGTGGCATCTGTTTTTATTATAAATATGGTGGTTACATGAAAATGTGCATATGGTTATATGCAATGGTTTTTCTACTTTTTATTTTGATATTTTGTTTAGTTATTGACATTCACCTTTTCGCTGTTGGTCAGAAAATGACCAATGCCGGAATTGGATAAAATGTTGTCCCCAGTATGCATT
GGAAAACTTTTACAGTAATGGCTATAAATTAATGTTGAAAAACAGCGTTTTTCTGGAACTTATTGGAAAAATAAGTCCTGAGTGAACATTGTATCATTCCACCATGTACAAGCTTCATTACTCTTCCGTCCAGTGAAGGCCCTGTGAGAGGTTGAACTACTTTTTATGCTTGTGAAGGGCAAATTGAACCTGTTAGAGGT
TGTTGATTTTGGCTGAAATGTATTTTTTTTTGAGTTGTGATCCAAAAAGGCATCGGAGGAATGACAAACTTTGGGATATTAGGTCTCAATGAGTGTGATAGATTAGAAGGAGACTACAATTTCACCCCTTGAAAGTGCAGGTTGCATATGGTTATGGAGGAGATTGATCTTTAGGGCACAATCTAGGGAAAAGTAACAGT
TCTTTCCAATCCTCAACAATTATCTCTGTAAGAGAAGAGGGTTGCTAAAGCAAAAGGGATTCTTTTGGATTTTATAAAGGACCACCTGATTCCTCACAGGCAAGGGAAATCAACAAAGGAAATGTTTGATGCATTGACAAGTTTGTATCAAAGTGTCAATATTGTCAGGAAGATGCTCTTAAAGGACAGATTCACACAAA
CATGCATGAGTAATTCAGACATTGTGGAGGGCTACCTTATGAAGATCAACGATCTTAGAAAACAACTCTTTGCTATTGATATGAAGATCAAAGATGAGGAATTAGTGCCTTTTGTACTTTATGGTTTCTCCCTTATTTGGGAAGCCTTTGTTCAGGGTGTATGTGCTCTGGAAAACCTCCCAACTTATGAGAAACCTTGG
GGCATCATTGTCTAAGAAGAAACAACACAAGAAACAATGCCAGGTCGAATAGAAGAGGACCAAGAGTTTACGCTTATCAGGAAGTGAGGAAAGCTGGAAAGAAAAGAGGACCCACAAGGGTAAAGAAGGAGGAGACATCTTCTTCAGATCATGGTACTAAGGATCAGAGTCATGTGACTTGTTACAAGTGTCACAAGAAA
GGACACTTTGCTAATCAATGTTCCAAGAAGAGGAAAGGTAAGCAACAACATCAGTAGTTTGCATGGAGCGCAAATGCTTCAGCTGGAGTGGATGAATCAGCAACCAAGCTTGAAATTGCCTTCATTAGGTTTCATGCCTTTCTACCAATACCACTTCTGGTGTTGGTTGGTATGTGGACAATGGAATGTCATGGCATATG
ACTTTCAGCAGGAAAAATTTCAGCAAGTTTCAAGAACAAGATGGCCATACAAGTGGAGTTGGGTGATGTTGCTACATACTTGGTGGCTGGAATCAACACCATCTCCTTCAAGATGCCTTTAGGTGATGTTCTCAATTTGCATGTTCTTTTTGTACCTAAATTAAGTAAGAATCTCTTCTTAGTGTCAATGATTAAAGATA
TGAAATGCATAGTTGAGTTTAATTATCCGTGGTTCACCATAAAAGATTGTAGTCAAGAACCTCATTGGTTTTTCGCCAAAGGTGTGTGAAGTAGGTCTTTAAAGGCCCCTTACTAATATCACAAAACATGAAGCAGTCTCTGCAAGTTGTGGCAAATTGTGGCGGTTGGAGACCTTTACTACATGATAGTGGAAAATTGT
GTGCGTTGTGACACAAGCGTCTTGGTCACTTGCACTATGGAGCCCTTCCTCTCTTGAAAGGTACAGTGCAGGGATTGCCAGAATTCAAGATAGTACAAATCAATGTGTACAAAGGATGTGGACTTGATAAGCATTCTAACTCTAGTTTTCCATCTAGTGAGCAAAGATTGAAAGAGATTCTAGAGTTGATACATTTCGAT
GTATGCCAACCTATGTCTTCCTATTTATTAAAAGGTAATTTATATCATGTTTTTTTCATTGATGATTCCTCTTGGAAATCTTGGATTTATTGAAGAAAACTAAGGATGAAGTATTCATTATATTCAGCGAATTCAAAGTTTTGGTTGAAAATTAGACAAGGAAGAGGATCAAGGTGTTTTGGTGCAATAATGAAGGAGTG
TACACCTTCAAGGAGTTTGATGCCTTTTGCATGCAAGCAATGATTAAGAAGGAACTTATAGTACCATACAACCCATAGCATAATGGGGGTGCTAAATGTAAGAATATATCCATCATTGAGACAATAAAGGCCATGCTTCATGACATGGACTTGCCCATGTATCTTCGGGCAGAAGCATGCATTATTGTTGTCTACATCTT
GAACCATTGTCCACATAATATTTGAAAGGACAAAACACTAGAGGGGGGGGTTTCACTAGTGAGAAGCCCTAG
>TRINITY_DN125281_c1_g1_i7 from sample A1 / Example unspliced isoform:AGAAGTCTGGCGGCACGAGTTCGAATATGTGGGGGAGCTCGTCGTCATCGTAATACGGGATCCCCTGAACATTTCCCACAGCCATGACGGACGAGCCAGCCATTACCAGATGGAAATTTGAGGTATATTTCATTCCTTTTGCCTTCTTTTAGCAATCGTATTCTCTACTGATCGCATTAAATTCCAATATCAGCACCAGT
CTTCAAATAAGTTCAAAGCATCTGCTGAAATCCAAATCAAAGGATCGCAGGATCGATTCTCGCGGCTTCCTGTTACAGCCTTTTTTGGTTGCGTATTTTTATCTTATGCAGGATTTTGAGGAAGTGTATGATGCGAAATTCGGAGTTAAACGGGAAAATGCGGGGTCTAATGGACATTCTCTAGTAGAAAACGGTCAGGA
GGGTTTTGATGAACGTACGAGTGTGGCAGTCAATGGAAATGGCAGCAATACAAGGAACTCTGCGGGTTTGGCCGTCTATGAACAGTTTTTATGCCAGgtaggtcagcggactttgtaattccgtaatcgttgtcactttgattagaaataaaaagggaaatttataggatgtcgagtagatcgttggattcttcagtttg
tgaagctcacaatttctttctgattaaaagcacagaaaactaatatacagaaaataataatataggtgtaactttagcaacctcaaacacgcattagagagaaaattgcagactaattcttcaaactatgctgtaaacttctgaagtggaatgtgctgtattggattcagGAAAACAGCGGAACAGAGTTTGCTGGTGTA
TCTGTAGGGAGATCGGCAGCGAAACCGTGAGAGGCTTTGTCGTTTTTTTAATTTTTATTCTTTAATTTAACTTTTCTTTTTGCTCTTTCCAGCTTTTTCTTTGCAAAAAATTCTTCCAAGGGGTGACATCATTACGGATCTATATTTTCTCTGCCTGCTCTTCCTTTGATATTTATGATTTTCATGGTGTTTTGACATAA
TAAATCAATTTCCCAGTGTTGTCGGATTTTTTTCCCCAGCGTTAGTGTGATAGTGGCATCTGTTTTTATTATAAATATGGTGGTTACATGAAAATGTGCATATGGTTATATGCAATGGTTTTTCTACTTTTTATTTTGATATTTTGTTTAGTTATTGACATTCACCTTTTCGCTGTTGGTCAGAAAATGACCAATGCCGG
AATTGGATAAAATGTTGTCCCCAGTATGCATTGGAAAACTTTTACAGTAATGGCTATAAATTAATGTTGAAAAACAGCGTTTTTCTGGAACTTATTGGAAAAATAAGTCCTGAGTGAACATTGTATCATTCCACCATGTACAAGCTTCATTACTCTTCCGTCCAGTGAAGGCCCTGTGAGAGGTTGAACTACTTTTTATG
CTTGTGAAGGGCAAATTGAACCTGTTAGAGGTTGTTGATTTTGGCTGAAATGTATTTTTTTTTGAGTTGTGATCCAAAAAGGCATCGGAGGAATGACAAACTTTGGGATATTAGGTCTCAATGAGTGTGATAGATTAGAAGGAGACTACAATTTCACCCCTTGAAAGTGCAGGTTGCATATGGTTATGGAGGAGATTGAT
CTTTAGGGCACAATCTAGGGAAAAGTAACAGTTCTTTCCAATCCTCAACAATTATCTCTGTAAGAGAAGAGGGTTGCTAAAGCAAAAGGGATTCTTTTGGATTTTATAAAGGACCACCTGATTCCTCACAGGCAAGGGAAATCAACAAAGGAAATGTTTGATGCATTGACAAGTTTGTATCAAAGTGTCAATATTGTCAG
GAAGATGCTCTTAAAGGACAGATTCACACAAACATGCATGAGTAATTCAGACATTGTGGAGGGCTACCTTATGAAGATCAACGATCTTAGAAAACAACTCTTTGCTATTGATATGAAGATCAAAGATGAGGAATTAGTGCCTTTTGTACTTTATGGTTTCTCCCTTATTTGGGAAGCCTTTGTTCAGGGTGTATGTGCTC
TGGAAAACCTCCCAACTTATGAGAAACCTTGGGGCATCATTGTCTAAGAAGAAACAACACAAGAAACAATGCCAGGTCGAATAGAAGAGGACCAAGAGTTTACGCTTATCAGGAAGTGAGGAAAGCTGGAAAGAAAAGAGGACCCACAAGGGTAAAGAAGGAGGAGACATCTTCTTCAGATCATGGTACTAAGGATCAGA
GTCATGTGACTTGTTACAAGTGTCACAAGAAAGGACACTTTGCTAATCAATGTTCCAAGAAGAGGAAAGGTAAGCAACAACATCAGTAGTTTGCA
Intron 3 GTGAGAGGCT ... GAAAGTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 60.13 | 63 | 95 | 22 |
| A2 | 56.41 | 51 | 66 | 14 |
| A3 | 57.06 | 76 | 101 | 20 |
| A4 | 57.98 | 50 | 69 | 20 |
| A5 | 66.18 | 23 | 45 | 14 |
| A6 | 57.8 | 119 | 163 | 3 |
| A7 | 56.44 | 159 | 206 | 12 |
| A8 | 60.27 | 87 | 132 | 15 |
| A9 | 57.53 | 155 | 210 | 4 |
| A10 | 57.32 | 137 | 184 | 0 |
>TRINITY_DN119297_c1_g1_i7 from sample A3 / Example spliced isoformGAAAACGGTCAGGAGGGTTTTGATGAACGTACGAGTGTGGCAGTCAATGGAAATGGCAGCAATACAAGGAACTCTGCGGGTTTGGCCGTCTATGAACAGTTTTTATGCCAGGAAAACAGCGGAACAGAGTTTGCTGGTGTATCTGTAGGGAGATCGGCAGCGAAACCGTTGCATATGGTTATGGAGGAGATTGATCTTTA
GGGCACAATCTAGGGAAAAGTAACAGTTCTTTCCAATCCTCAACAATTATCTCTGTAAGAGAAGAGGGTTGCTAAAGCAAAAAGGATTCTTTTGGATTTTATAAAGGACCACCTGATTCCTCACAGGCAAGGGAAATCAACAAAGGAAATGTTTGATGCATTGACAAGTTTGTATCAAAGTGTCAATATTGTCAGGAAGA
TGCTCTTAAAGGACAGATTCACACAAACATGCATGAGTAATTCAGACATTGTGGTGGGCTACCTTATGAAGATCAACGATCTTAGAAAACAACTCTTTGCTATTGATATGAAGATCAAAGATGAGGAATTAGTGCCTTTTGTACTTTATGGTTTCTCCCTTATTTGGGAAGCCTTTGTTCAGGGTGTATGTGCTCTGGAA
AACCTCCCAACTTATGAGAAACCTTGGGGCATCATTGTCTAAGAAGAAACAACACAAGAAACAATGCCAGGTCGAATAGAAGAGGACCAAGAGTTTACGCTTATCAGGAAGTGAGGAAAGCTGGAAAGAAAAGAGGACCCACAAGGGTAAAGAAGGAGGAGACATCTTCTTCAGATCATGGTACTAAGGATCAGAGTCAT
GTGACTTGTTACAAGTGTCACAAGAAAGGACACTTTACTAATCAATGTTCCAAGAAGAGGAAAGGTAAGCAACAACATCAGTAGTTTGCATGGAGCGCAAATGCTTCAGCTGGAGTGGATGAATCGGCAACCAAGCTTGAAATTGCCTTCATTAGGTTTCATGCCTTTCTACCAATACCACTTCTGGTGTTGGTTGGTAT
GTGGACAATGGAATGTCATGGCATATGACTTTCAGCAGGAAAAATTTCAGCAAGTTTCAAGAACAAGATGGCCATACAAGTGGAGTTGGGTGATGTTGCTACATACTTGGTGGCTGGAATCAACACCATCTCCTTCAAGATGCCTTTAGG
>TRINITY_DN119297_c1_g1_i9 from sample A3 / Example unspliced isoform:GAAAACGGTCAGGAGGGTTTTGATGAACGTACGAGTGTGGCAGTCAATGGAAATGGCAGCAATACAAGGAACTCTGCGGGTTTGGCCGTCTATGAACAGTTTTTATGCCAGGAAAACAGCGGAACAGAGTTTGCTGGTGTATCTGTAGGGAGATCGGCAGCGAAACCgtgagaggctttgtcgtttttttaatttttatt
ctttaatttaacttttctttttgctctttccagctttttctttgcaaaaaattcttccaaggggtgacatcattacggatctatattttctctgcctgctcttcctttgatatttatgattttcatggtgttttgacataataaatcaatttcccagtgttgtcgaattttttttcccagcgttagtgtgatagtggcat
ctgtttttattataaatatggtggttacatgaaaatgtgcatatggttatatgcaatggtttttctactttttattttgatattttgtttagttattgacattcaccttttcgctgttggtcagaaaatgaccaatgccggaattggataaaatgttgtccccagtatgcattggaaaacttttacagtaatggctataa
attaatgttgaaaaacagcgtttttctggaacttattggaaaaataagtcctgagtgaacattgtatcattccaccatgtacaagcttcattactcttccgtccagtgaaggccctgtgagaggttgaactactttttatgcttgtgaagggcaaattgaacctgttagaggttgttgattttggctgaaatgtattttt
ttttgagttgtgatccaaaaaggcatcggaggaatgacaaactttgggatattaggtctcaatgagtgtgatagattagaaggagactacaatttcaccccttgaaagtgcagGTTGCATATGGTTATGGAGGAGATTGATCTTTAGGGCACAATCTAGGGAAAAGTAACAGTTCTTTCCAATCCTCAACAATTATCTCT
GTAAGAGAAGAGGGTTGCTAAAGCAAAAAGGATTCTTTTGGATTTTATAAAGGACCACCTGATTCCTCACAGGCAAGGGAAATCAACAAAGGAAATGTTTGATGCATTGACAAGTTTGTATCAAAGTGTCAATATTGTCAGGAAGATGCTCTTAAAGGACAGATTCACACAAACATGCATGAGTAATTCAGACATTGTGG
TGGGCTACCTTATGAAGATCAACGATCTTAGAAAACAACTCTTTGCTATTGATATGAAGATCAAAGATGAGGAATTAGTGCCTTTTGTACTTTATGGTTTCTCCCTTATTTGGGAAGCCTTTGTTCAGGGTGTATGTGCTCTGGAAAACCTCCCAACTTATGAGAAACCTTGGGGCATCATTGTCTAAGAAGAAACAACA
CAAGAAACAATGCCAGGTCGAATAGAAGAGGACCAAGAGTTTACGCTTATCAGGAAGTGAGGAAAGCTGGAAAGAAAAGAGGACCCACAAGGGTAAAGAAGGAGGAGACATCTTCTTCAGATCATGGTACTAAGGATCAGAGTCATGTGACTTGTTACAAGTGTCACAAGAAAGGACACTTTACTAATCAATGTTCCAAG
AAGAGGAAAGGTAAGCAACAACATCAGTAGTTTGCATGGAGCGCAAATGCTTCAGCTGGAGTGGATGAATCGGCAACCAAGCTTGAAATTGCCTTCATTAGGTTTCATGCCTTTCTACCAATACCACTTCTGGTGTTGGTTGGTATGTGGACAATGGAATGTCATGGCATATGACTTTCAGCAGGAAAAATTTCAGCAAG
TTTCAAGAACAAGATGGCCATACAAGTGGAGTTGGGTGATGTTGCTACATACTTGGTGGCTGGAATCAACACCATCTCCTTCAAGATGCCTTTAGGCAAAAAGGAGTGTTGTCAGCTTTTGAGTCTGTTGAAATGCGTAGCTTGGCAGAAAGTATTTGCCGGGATATTCTTCGAGGGAGTACTGATGTGCAGTGGAACAA
CATCAAGGGTCTAGAGAATGCAAAACGACTTTTGAAAGAAGCAGTCGTCATGCCTATTAAGTACCCTAAGTATTTTAGAGGCCTTCTATCGCCATGGAAAGGGATTCTTCTATTTGGCCCTCCTGGAACGGGAAAGACAATGCTTGCTAAGGCAGTGGCTACTGAGTGCAAAACAACATTCTTCAACATTTCTGCGTCAT
CCATTGTTAGCAAGTGGCGTGGTGATTCAGAAAAACTTGTAAAAGTTCTTTTTGAGGTTGCAAGACATCATGCACCATCAACAATATTTTTGGACGAAATTGATGCTATCATTAGTCACCGTGGCGAAGGCCGCAGTGAGCATGAAGCAAGTAGGCGGTTAAAGACTGAGCTACTTATCCAGATGGATGGTTTAATGCAA
ACAAATGATCTCGTCTTTGTCCTGGCGGCGACTAATTTGCCGTGGGAACTGGATGGTGCCATGCTTCGACGTCTTGAAAAGCGTATTCTTGTGCCTCTTCCTGAGCCTGAAGCACGTCAAGCCATGTTTGAAGACCTTTTGCCTTTGCAACCTGGCTCTGAGCTACCATACGATCTTATGGTTGAAAGGACACAAGGCTA
TTCTGGTTCAGATATTCGTTTAGTTTGCAAAGAGGCTGCCATGCGGCCACTGAGGCGATTAATGGCCATGCTTGAAGAAAATGATGCAGCTGAATTACCGGAAGAAGACCTGCCCAGCATTGGTCCTGTCACAAGTGATGATATTATTGTAGCTCTTAAAATCACAAGGCCATCAGCACATCTTAATGAAAATCGTTACC
AAAAGTTTAACGATGAGTATGGCAGCCAAGCAACATTTTGATGTTCCTTGCATCGAGTTGTCTTGTATACATAAAATGAAAGGATGGAATTTGTGGCGATTTTGAAAAGTGAGACGTTTTGCTAGTGATCATTGATTGTACAGGGGGTATTGTTCTTTCATTCATTTGAAGCCCTATATCTATCTCTTCAAGCGCATAAT
TATATTGGCATCAATAATTAGTAATTAGGTCATGCTGATTTTAATGCTTTTAATTTGAGGCATTAGTTTGATTAAAATTTTGGAGAATAAATACTTTGAGCTGGGTTTATATCCCATTTGATTAAAATTTTGGAGAATAAATACTTTGAGCTGGGTTTATATCCCATATCTATTGAAGCCTGTGATTTGCAATTAGTATG
TTACATTAGAAATATATCTTCGGACTTGAAAGTGTACATTACATTGTTATCTTCATGACGCC
Intron 4 GTGAGAGGCT ... ATGCCTTTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 27.79 | 186.7 | 93 | 50.7 |
| A2 | 22.09 | 181 | 66 | 36.7 |
| A3 | 23.43 | 220 | 98 | 36.7 |
| A4 | 24.25 | 163 | 65 | 39.3 |
| A5 | 24.49 | 93 | 45 | 15.3 |
| A6 | 21.86 | 469 | 163 | 99.3 |
| A7 | 22.14 | 547 | 203.7 | 107.3 |
| A8 | 24.56 | 366.7 | 131 | 107.7 |
| A9 | 23.41 | 489 | 206 | 93 |
| A10 | 24.61 | 437.7 | 181.3 | 104.3 |
>TRINITY_DN125281_c1_g1_i5 from sample A1 / Example spliced isoformATTTACGTGCCACACTGAACTGGGCTGGACTTTAGTCTGGCGGCACGAGTTCGAATCTGTGGGGGAGCTCGTCATCATCGTAATACGGGATCCCCTGAACATTTCCCACAGCCATGACGGACGAGCCAGCCATTACCAGATGGAAATTTGAGGATTTTGAGGAAGTGTATGATGCGAAATTCGGAGTTAAACGGGAAAAT
GCGGGGGCTAATGGACATTCTCGAGTGGAAAACGGTCAGGAGGGTTTTGATGAACGTACGAGTGTGGCAGTCAATGGAAATGGCAGCAATACAAGGAACTCTGCGGGTTTGGCCGTCTATGAACAGTTTTTATGCCAGGAAAACAGCGGAACAGAGTTTGCTGGTGTATCTGTAGGGAGATCGGCAGCGAAACCGCAAAA
AGGAGTGTTGCCAGCTTTTGAGTCTGTTGAAATGCGTAGCTTGGCAGAAAGTATTTGCCGGGATATTCTTCGAGGGAGTCCCGATGTGCAGTGGAACAACATCAAGGGTCTAGAGAATGCAAAACGACTTTTGAAAGAAGCAGTCGTCATGCCTATTAAGTACCCTAAGTATTTTAGAGGCCTTCTATCGCCATGGAAAG
GGATTCTTCTATTTGGCCCTCCTGGAACGGGAAAG
>TRINITY_DN125281_c1_g1_i1 from sample A1 / Example unspliced isoform:ATTTACGTGCCACACTGAACTGGGCTGGACTTTAGTCTGGCGGCACGAGTTCGAATCTGTGGGGGAGCTCGTCATCATCGTAATACGGGATCCCCTGAACATTTCCCACAGCCATGACGGACGAGCCAGCCATTACCAGATGGAAATTTGAGGATTTTGAGGAAGTGTATGATGCGAAATTCGGAGTTAAACGGGAAAAT
GCGGGGGCTAATGGACATTCTCGAGTGGAAAACGGTCAGGAGGGTTTTGATGAACGTACGAGTGTGGCAGTCAATGGAAATGGCAGCAATACAAGGAACTCTGCGGGTTTGGCCGTCTATGAACAGTTTTTATGCCAGGAAAACAGCGGAACAGAGTTTGCTGGTGTATCTGTAGGGAGATCGGCAGCGAAACCgtgaga
ggctttgtcgtttttttaatttaacttttctttttgctctttccagctttttctttgcaaaaaattcttccaaggggtgacatcattacggatctatattttctctgcctgctcttcctttgatatttatgattttcatggtgttttgacataataaatcaatttcccagtgttgtcgaattttttttcccagcgttagt
gtgatagtggcatctgtttttattataaatatggtggttacatgaaaatgtgcatatggttatatgcaatggtttttctactttttattttgatattttgtttagttattgacattcaccttttcgctgttggtcagaaaatgaccaatgccggaattggataaaatgttgtccccagtatgcattggaaaacttttaca
gtaatggctataaattaatgttgaaaaacagcgtttttctggaacttattggaaaaataagtcctgagtgaacattgtatcattccaccatgtacaagcttcattactcttccgtccagtgaaggccctgtgagaggttgaactactttttatgcttgtgaagggcaaattgaacctgttagaggttgttgattttggct
gaaatgtatttttttttgagttgtgatccaaaaaggcatcggaggaatgacaaactttgggatattaggtctcaatgagtgtgatagattagaaggagactacaatttcaccccttgaaagtgcaggttgcatatggttatggaggagattgatctttagggcacaatctagggaaaagtaacagttctttccaatcctc
aacaattatctctgtaagagaagagggttgctaaagcaaaagggattcttttggattttataaaggaccacctgattcctcacaggcaagggaaatcaacaaaggaaatgtttgatgcattgacaagtttgtatcaaagtgtcaatattgtcaggaagatgctcttaaaggacagattcacacaaacatgcatgagtaat
tcagacattgtggagggctaccttatgaagatcaacgatcttagaaaacaactctttgctattgatatgaagatcaaagatgaggaattagtgccttttgtactttatggtttctcccttatttgggaagcctttgttcagggtgtatgtgctctggaaaacctcccaacttatgagaaaccttggggcatcattgtcta
agaagaaacaacacaagaaacagtgccagctcgaatagaagaggaccaagagtttacacttatcaggaaggtgaggaaagctggaaagaaaagaggacccacaagggtaaagaaggaggagacatcttcttcagatcatggtactaaggatcagagtcatgtgacttgttacaagtgtcacaagaaaggacactttgcta
atcaatgttccaagaagaggaaaggtaagcaacaacatcagtagtttgcacggagtgcaaatgcttcagctggagtggatgagtcagcaaccaagcttgaaattgccttcattaggtttcatgcctttctaccaataccacttctggtgttggttggtatgtggacaatggaatgtcatggcatatgactttcagcagga
aaaatttcagcaagtttcaagaacaagatggccatacaagtggagttgggtgatgttgctacatacttggtggctggaatcaacaccatctccttcaagatgcctttagGCAAAAAGGAGTGTTGCCAGCTTTTGAGTCTGTTGAAATGCGTAGCTTGGCAGAAAGTATTTGCCGGGATATTCTTCGAGGGAGTCCTGAT
GTGCAGTGGAACAACATCAAGGGTCTAGAGAATGCAAAACGACTTTTGAAAGAAGCAGTCGTCATGCCTATTAAGTACCCTAAGTATTTTAGAGGCCTTCTATCGCCATGGAAAGGGATTCTTCTATTTGGCCCTCCTGGAACGGGAAAGACAATGCTTGCTAAGGCAGTGGCTACTGAGTGCAAAACAACATTCTTCAA
CATTTCTGCGTCATCCATTGTTAGCAAGTGGCGTGGTGATTCAGAAAAACTTGTAAAAGTTCTTTTTGAGGTTGCAAGACATCATGCACCATCAACAATATTTTTGGACGAAATTGATGCTATCATTAGTCACCGTGGCGAAGGCCGCAGTGAGCATGAAGCAAGTAGGCGGTTAAAGACTGAGCTACTTATCCAGATGG
ATGGTTTAATGCAAACAAATGATCTCGTCTTTGTCCTGGCGGCGACTAATTTGCCGTGGGAACTGGATGGTGCCATGCTTCGACGTCTTGAAAAGCGTATTCTTGTGCCTCTTCCTGAGCCTGAAGCACGTCAAGCCATGTTTGAAGACCTTTTGCCTTTGCAACCTGGCTCTGAGCTACCATACGATCTTATGGTTGAA
AGGACACAAGGCTACTCTGGTTCAGATATTCGTTTAGTTTGCAAAGAGGCTGCCATGCGGCCACTGAGGCGATTAATGGCCATGCTTGAAGAAAATGATGCAGCTGAATTACCGGAAGAAGACCTGCCCAGCATTGGTCCTGTCACAAGTGATGATATTATTGTAGCTCTTAAAATCACAAGGCCATCAGCACATCTTAA
TGAAAATCGTTACCAAAAGTTTAACGATGAGTATGGCAGCCAAGCAACATTTTGATGTTCCTTGCATCGAGTTGTCTTGTATACATAAAATGAAAGGATGGAATTTGTGGCGATTTTGAAAAGTGAGACGTTTTGCTAGTGATCATTGATTGTACAGGGGGTATTGTTCTTTCATTCATTTGAAGCCCTATATCTATCTC
TTCAAGCGCATAATTATATTGGCATCAATAATTAGTAATTAGGTCATGCTGATTTTAATGCTTTTAATTTGAGGCATTAGTTTGATTAAAATTTTGGAGAATAAATACTTTGAGCTGGGTTTATATCCCATTTGATTAAAATTTTGGAGAATAAATACTTTGAGCTGGGTTTATATCCCATATCTATTGAAGCCTGTGAT
TTGCAATTAGTATGTTACATTAGAAATATATCTTCGGACTTGAAAGTGTACATTACATTGTTATCTTCATGACGCCGGAATGAGTTTAGTCTTGATTCCTCAAAGCTGAACACAGTAATATTTTCAAGTGGCAAGTCAACTTACGCTTCATCATAAGTTTC
Intron 5 GTGAGAGGCT ... ATGCCTTTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 28.08 | 187 | 94 | 52 |
| A2 | 22.32 | 181 | 66 | 38 |
| A3 | 23.74 | 220 | 99 | 38 |
| A4 | 24.3 | 162 | 66 | 38 |
| A5 | 24.08 | 93 | 45 | 14 |
| A6 | 21.83 | 471 | 163 | 100 |
| A7 | 22.09 | 545 | 203 | 106 |
| A8 | 24.29 | 374 | 131 | 109 |
| A9 | 23.11 | 494 | 204 | 93 |
| A10 | 24.54 | 435 | 180 | 103 |
>TRINITY_DN125281_c1_g1_i5 from sample A1 / Example spliced isoformATTTACGTGCCACACTGAACTGGGCTGGACTTTAGTCTGGCGGCACGAGTTCGAATCTGTGGGGGAGCTCGTCATCATCGTAATACGGGATCCCCTGAACATTTCCCACAGCCATGACGGACGAGCCAGCCATTACCAGATGGAAATTTGAGGATTTTGAGGAAGTGTATGATGCGAAATTCGGAGTTAAACGGGAAAAT
GCGGGGGCTAATGGACATTCTCGAGTGGAAAACGGTCAGGAGGGTTTTGATGAACGTACGAGTGTGGCAGTCAATGGAAATGGCAGCAATACAAGGAACTCTGCGGGTTTGGCCGTCTATGAACAGTTTTTATGCCAGGAAAACAGCGGAACAGAGTTTGCTGGTGTATCTGTAGGGAGATCGGCAGCGAAACCGCAAAA
AGGAGTGTTGCCAGCTTTTGAGTCTGTTGAAATGCGTAGCTTGGCAGAAAGTATTTGCCGGGATATTCTTCGAGGGAGTCCCGATGTGCAGTGGAACAACATCAAGGGTCTAGAGAATGCAAAACGACTTTTGAAAGAAGCAGTCGTCATGCCTATTAAGTACCCTAAGTATTTTAGAGGCCTTCTATCGCCATGGAAAG
GGATTCTTCTATTTGGCCCTCCTGGAACGGGAAAG
>TRINITY_DN125281_c1_g1_i19 from sample A1 / Example unspliced isoform:ATTTACGTGCCACACTGAACTGGGCTGGACTTTAGTCTGGCGGCACGAGTTCGAATCTGTGGGGGAGCTCGTCATCATCGTAATACGGGATCCCCTGAACATTTCCCACAGCCATGACGGACGAGCCAGCCATTACCAGATGGAAATTTGAGGATTTTGAGGAAGTGTATGATGCGAAATTCGGAGTTAAACGGGAAAAT
GCGGGGGCTAATGGACATTCTCGAGTGGAAAACGGTCAGGAGGGTTTTGATGAACGTACGAGTGTGGCAGTCAATGGAAATGGCAGCAATACAAGGAACTCTGCGGGTTTGGCCGTCTATGAACAGTTTTTATGCCAGGAAAACAGCGGAACAGAGTTTGCTGGTGTATCTGTAGGGAGATCGGCAGCGAAACCgtgaga
ggctttgtcgtttttttaatttttattctttaatttaacttttctttttgctctttccagctttttctttgcaaaaaattcttccaaggggtgacatcattacggatctatattttctctgcctgctcttcctttgatatttatgattttcatggtgttttgacataataaatcaatttcccagtgttgtcgaatttttt
ttcccagcgttagtgtgatagtggcatctgtttttattataaatatggtggttacatgaaaatgtgcatatggttatatgcaatggtttttctactttttattttgatattttgtttagttattgacattcaccttttcgctgttggtcagaaaatgaccaatgccggaattggataaaatgttgtccccagtatgcatt
ggaaaacttttacagtaatggctataaattaatgttgaaaaacagcgtttttctggaacttattggaaaaataagtcctgagtgaacattgtatcattccaccatgtacaagcttcattactcttccgtccagtgaaggccctgtgagaggttgaactactttttatgcttgtgaagggcaaattgaacctgttagaggt
tgttgattttggctgaaatgtatttttttttgagttgtgatccaaaaaggcatcggaggaatgacaaactttgggatattaggtctcaatgagtgtgatagattagaaggagactacaatttcaccccttgaaagtgcaggttgcatatggttatggaggagattgatctttagggcacaatctagggaaaagtaacagt
tctttccaatcctcaacaattatctctgtaagagaagagggttgctaaagcaaaagggattcttttggattttataaaggaccacctgattcctcacaggcaagggaaatcaacaaaggaaatgtttgatgcattgacaagtttgtatcaaagtgtcaatattgtcaggaagatgctcttaaaggacagattcacacaaa
catgcatgagtaattcagacattgtggagggctaccttatgaagatcaacgatcttagaaaacaactctttgctattgatatgaagatcaaagatgaggaattagtgccttttgtactttatggtttctcccttatttgggaagcctttgttcagggtgtatgtgctctggaaaacctcccaacttatgagaaaccttgg
ggcatcattgtctaagaagaaacaacacaagaaacagtgccagctcgaatagaagaggaccaagagtttacacttatcaggaaggtgaggaaagctggaaagaaaagaggacccacaagggtaaagaaggaggagacatcttcttcagatcatggtactaaggatcagagtcatgtgacttgttacaagtgtcacaagaa
aggacactttgctaatcaatgttccaagaagaggaaaggtaagcaacaacatcagtagtttgcacggagtgcaaatgcttcagctggagtggatgagtcagcaaccaagcttgaaattgccttcattaggtttcatgcctttctaccaataccacttctggtgttggttggtatgtggacaatggaatgtcatggcatat
gactttcagcaggaaaaatttcagcaagtttcaagaacaagatggccatacaagtggagttgggtgatgttgctacatacttggtggctggaatcaacaccatctccttcaagatgcctttagGCAAAAAGGAGTGTTGCCAGCTTTTGAGTCTGTTGAAATGCGTAGCTTGGCAGAAAGTATTTGCCGGGATATTCTTC
GAGGGAGTCCTGATGTGCAGTGGAACAACATCAAGGGTCTAGAGAATGCAAAACGACTTTTGAAAGAAGCAGTCGTCATGCCTATTAAGTACCCTAAGTATTTTAGAGGCCTTCTATCGCCATGGAAAGGGATTCTTCTATTTGGCCCTCCTGGAACGGGAAAGACAATGCTTGCTAAGGCAGTGGCTACTGAGTGCAAA
ACAACATTCTTCAACATTTCTGCGTCATCCATTGTTAGCAAGTGGCGTGGTGATTCAGAAAAACTTGTAAAAGTTCTTTTTGAGGTTGCAAGACATCATGCACCATCAACAATATTTTTGGACGAAATTGATGCTATCATTAGTCACCGTGGCGAAGGCCGCAGTGAGCATGAAGCAAGTAGGCGGTTAAAGACTGAGCT
ACTTATCCAGATGGATGGTTTAATGCAAACAAATGATCTCGTCTTTGTCCTGGCGGCGACTAATTTGCCGTGGGAACTGGATGGTGCCATGCTTCGACGTCTTGAAAAGCGTATTCTTGTGCCTCTTCCTGAGCCTGAAGCACGTCAAGCCATGTTTGAAGACCTTTTGCCTTTGCAACCTGGCTCTGAGCTACCATACG
ATCTTATGGTTGAAAGGACACAAGGCTACTCTGGTTCAGATATTCGTTTAGTTTGCAAAGAGGCTGCCATGCGGCCACTGAGGCGATTAATGGCCATGCTTGAAGAAAATGATGCAGCTGAATTACCGGAAGAAGACCTGCCCAGCATTGGTCCTGTCACAAGTGATGATATTATTGTAGCTCTTAAAATCACAAGGCCA
TCAGCACATCTTAATGAAAATCGTTACCAAAAGTTTAACGATGAGTATGGCAGCCAAGCAACATTTTGATGTTCCTTGCATCGAGTTGTCTTGTATACATAAAATGAAAGGATGGAATTTGTGGCGATTTTGAAAAGTGAGACGTTTTGCTAGTGATCATTGATTGTACAGGGGGTATTGTTCTTTCATTCATTTGAAGC
CCTATATCTATCTCTTCAAGCGCATAATTATATTGGCATCAATAATTAGTAATTAGGTCATGCTGATTTTAATGCTTTTAATTTGAGGCATTAGTTTGATTAAAATTTTGGAGAATAAATACTTTGAGCTGGGTTTATATCCCATTTGATTAAAATTTTGGAGAATAAATACTTTGAGCTGGGTTTATATCCCATATCTA
TTGAAGCCTGTGATTTGCAATTAGTATGTTACATTAGAAATATATCTTCGGACTTGAAAGTGTACATTACATTGTTATCTTCATGACGCCGGAATGAGTTTAGTCTTGATTCCTCAAAGCTGAACACAGTAATATTTTCAAGTGGCAAGTCAACTTACGCTTCATCATAAGTTTC
Intron 6 GTAATTTTAG ... GTTTTGATAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 20.77 | 152.1 | 1.6 | 41.4 |
| A2 | 20.85 | 143.4 | 0 | 37.7 |
| A3 | 16.26 | 144.1 | 0 | 28.2 |
| A4 | 17.56 | 133.1 | 1.6 | 28.9 |
| A5 | 19.75 | 60.1 | 2 | 13.9 |
| A6 | 18.42 | 398.2 | 0 | 96.7 |
| A7 | 16.96 | 498.3 | 0 | 110.6 |
| A8 | 17.55 | 374.2 | 0 | 84.1 |
| A9 | 17.62 | 387.2 | 0 | 88.9 |
| A10 | 18.13 | 359.1 | 0 | 81.6 |
>TRINITY_DN125281_c1_g1_i15 from sample A1 / Example spliced isoformAGAAGTCTGGCGGCACGAGTTCGAATATGTGGGGGAGCTCGTCGTCATCGTAATACGGGATCCCCTGAACATTTCCCACAGCCATGACGGACGAGCCAGCCATTACCAGATGGAAATTTGAGGTATATTTCATTCCTTTTGCCTTCTTTTAGCAATCGTATTCTCTACTGATCGCATTAAATTCCAATATCAGCACCAGT
CTTCAAATAAGTTCAAAGCATCTGCTGAAATCCAAATCAAAGGATCGCAGGATCGATTCTCGCGGCTTCCTGTTACAGCCTTTTTTGGTTGCGTATTTTTATCTTATGCAGGATTTTGAGGAAGTGTATGATGCGAAATTCGGAGTTAAACGGGAAAATGCGGGGTCTAATGGACATTCTCTAGTAGAAAACGGTCAGGA
GGGTTTTGATGAACGTACGAGTGTGGCAGTCAATGGAAATGGCAGCAATACAAGGAACTCTGCGGGTTTGGCCGTCTATGAACAGTTTTTATGCCAGGAAAACAGCGGAACAGAGTTTGCTGGTGTATCTGTAGGGAGATCGGCAGCGAAACCGCAAAAAGGAGTGTTGCCAGCTTTTGAGTCTGTTGAAATGCGTAGCT
TGGCAGAAAGTATTTGCCGGGATATTCTTCGAGGGAGTACCGATGTGCAGTGGAACAACATCAAGGGTCTAGAGAATGCAAAACGACTTTTGAAAGAAGCAGTCGTCATGCCTATTAAGTACCCTAAGTATGAACTATATATTTCATCTCTCTTCTATCATTTATTGATTCATCAGCTTTTTATAACTGCTGATGAATCA
ATAAATATCATTTATTAAGTCCTTCAGCTTTTTATAACTGTAAGAAATAAATTCTTTTCATATTCTTTTAGAAATATATATGTGAAAACAAAATCCATCTTACTTCATTTGCTTGACCATTGCTTGACAATCGTATACTCTAATGGAGGCAGAGAAAATTGGTGCACTATCATTAAAAAATATATTTGGATGGGTTTTTA
CATTCAAAGCTTTCTTGTAAATTACTTGGGATTTAGCTGCATAGTTTGTAGTACAAAATTGTCAAAATCTTGTGAATAAACTTTATGAAAATAATAGGTTGATTAACTCTCTCCAATTGCTGGAATAACTAAGCTTTCTTCCTTTGACACCACACTTTATATCTATTATTTGGTTGTGTGGACTTGTGCTTTCTTCTTGT
CTATATATGATGCTTACAATTTCTATTAAGCTTAGGCATAGATCTAGGTTGAGGTGCCATCGACACCCTCTTTTTGTTGTGTTTGGCATATATGCCATTACCATTCCCATTGATCATTTATTTACTTGAGCACGTGAGTATAGTTTCTTTCTCTGTGTCATATCAAAGGGGTTGGTATCCTTGAGGCTTGCAAATTTTGA
AAATGAGCCATATCAAATTGGATCTTACATCTGTACATGGGAAAACATTACTAAGGTTTGGCTTTTTCCTGTTTACTGCTATAGATACCACTTCCTGACATTTTACAATCCAAGCTTCATATGGCTGCACATTTATCAAAAAATAGATTGGTTAGCATGTATTTCATTCTTCTTAGACTCTAGGGGTAATTGGTGATCAT
CAATCATGTTGGGAACTTGGAGTGAGGGGATTACACATGCCTAACATCAAACTCTCTGTGCTGTTAAAATTTCAGTCCATGGTAAACAGATCTGCAAACCTTTAACCCTAGGAAGCTAGAAAAACTCAAGGAACTCGCAAAACTATTTCTGTATGCTAGATCTGAAAACACGTGAGCTAACTGAGAAGTACTAACAGCAA
TTAATAAGAAATCACATTGCTTAGAAAATTCTCTCTATTTTTCTTTAGTAACTCACGAAAGAAAAAAGTGGTTAGTTCAAGTGGTTTGACTTGCCATGCTGAAGCCGAAT
>TRINITY_DN125281_c1_g1_i14 from sample A1 / Example unspliced isoform:GCTTGGCAGAAAGTATTTGCCGgtaattttagatctttagaattattttatttttcatgttactactattggttgtaggaaattattttctccaaaaatctttggcaagggatagatatagtctcctatatgaagattgctcccattaccaaagtagatggttgactcattcagtagatccattgttttgtctttgtact
ggttttgatagGGATATTCTTCGAGGGAGTACCGATGTGCAGTGGAACAACATCAAGGGTCTAGAGAATGCAAAACGACTTTTGAAAGAAGCAGTCGTCATGCCTATTAAGTACCCTAAGTAT
Intron 7 GTGAGAGGCT ... ATGCCTTTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 33.57 | 187 | 94.5 | 39.8 |
| A2 | 26.72 | 181 | 66 | 30.1 |
| A3 | 31.23 | 220.2 | 100 | 29.7 |
| A4 | 29.26 | 163.2 | 67.5 | 29.1 |
| A5 | 32.49 | 93.5 | 45 | 12.8 |
| A6 | 25.76 | 469.8 | 163 | 77.7 |
| A7 | 27.23 | 547 | 204.7 | 87.3 |
| A8 | 26.23 | 369.9 | 131.5 | 97.7 |
| A9 | 29.66 | 492.3 | 207.6 | 74.3 |
| A10 | 29.42 | 437.6 | 182.4 | 85.1 |
>TRINITY_DN125281_c1_g1_i5 from sample A1 / Example spliced isoformATTTACGTGCCACACTGAACTGGGCTGGACTTTAGTCTGGCGGCACGAGTTCGAATCTGTGGGGGAGCTCGTCATCATCGTAATACGGGATCCCCTGAACATTTCCCACAGCCATGACGGACGAGCCAGCCATTACCAGATGGAAATTTGAGGATTTTGAGGAAGTGTATGATGCGAAATTCGGAGTTAAACGGGAAAAT
GCGGGGGCTAATGGACATTCTCGAGTGGAAAACGGTCAGGAGGGTTTTGATGAACGTACGAGTGTGGCAGTCAATGGAAATGGCAGCAATACAAGGAACTCTGCGGGTTTGGCCGTCTATGAACAGTTTTTATGCCAGGAAAACAGCGGAACAGAGTTTGCTGGTGTATCTGTAGGGAGATCGGCAGCGAAACCGCAAAA
AGGAGTGTTGCCAGCTTTTGAGTCTGTTGAAATGCGTAGCTTGGCAGAAAGTATTTGCCGGGATATTCTTCGAGGGAGTCCCGATGTGCAGTGGAACAACATCAAGGGTCTAGAGAATGCAAAACGACTTTTGAAAGAAGCAGTCGTCATGCCTATTAAGTACCCTAAGTATTTTAGAGGCCTTCTATCGCCATGGAAAG
GGATTCTTCTATTTGGCCCTCCTGGAACGGGAAAG
>TRINITY_DN125281_c1_g1_i10 from sample A1 / Example unspliced isoform:ATTTACGTGCCACACTGAACTGGGCTGGACTTTAGTCTGGCGGCACGAGTTCGAATCTGTGGGGGAGCTCGTCATCATCGTAATACGGGATCCCCTGAACATTTCCCACAGCCATGACGGACGAGCCAGCCATTACCAGATGGAAATTTGAGGATTTTGAGGAAGTGTATGATGCGAAATTCGGAGTTAAACGGGAAAAT
GCGGGGGCTAATGGACATTCTCGAGTGGAAAACGGTCAGGAGGGTTTTGATGAACGTACGAGTGTGGCAGTCAATGGAAATGGCAGCAATACAAGGAACTCTGCGGGTTTGGCCGTCTATGAACAGTTTTTATGCCAGGAAAACAGCGGAACAGAGTTTGCTGGTGTATCTGTAGGGAGATCGGCAGCGAAACCgtgaga
ggctttgtcgtttttttaatttttattctttaatttaacttttctttttgctctttccagctttttctttgcaaaaaattcttccaaggggtgacatcattacggatctatattttctctgcctgctcttcctttgatatttatgattttcatggtgttttgacataataaatcaatttcccagtgttgtcgaatttttt
ttcccagcgttagtgtgatagtggcatctgtttttattataaatatggtggttacatgaaaatgtgcatatggttatatgcaatggtttttctactttttattttgatattttgtttagttattgacattcaccttttcgctgttggtcagaaaatgaccaatgccggaattggataaaatgttgtccccagtatgcatt
ggaaaacttttacagtaatggctataaattaatgttgaaaaacagcgtttttctggaacttattggaaaaataagtcctgagtgaacattgtatcattccaccatgtacaagcttcattactcttccgtccagtgaaggccctgtgagaggttgaactactttttatgcttgtgaagggcaaattgaacctgttagaggt
tgttgattttggctgaaatgtatttttttttgagttgtgatccaaaaaggcatcggaggaatgacaaactttgggatattaggtctcaatgagtgtgatagattagaaggagactacaatttcaccccttgaaagtgcaggttgcatatggttatggaggagattgatctttagggcacaatctagggaaaagtaacagt
tctttccaatcctcaacaattatctctgtaagagaagagggttgctaaagcaaaagggattcttttggattttataaaggaccacctgattcctcacaggcaagggaaatcaacaaaggaaatgtttgatgcattgacaagtttgtatcaaagtgtcaatattgtcaggaagatgctcttaaaggacagattcacacaaa
catgcatgagtaattcagacattgtggagggctaccttatgaagatcaacgatcttagaaaacaactctttgctattgatatgaagatcaaagatgaggaattagtgccttttgtactttatggtttctcccttatttgggaagcctttgttcagggtgtatgtgctctggaaaacctcccaacttatgagaaaccttgg
ggcatcattgtctaagaagaaacaacacaagaaacaatgccaggtcgaatagaagaggaccaagagtttacgcttatcaggaagtgaggaaagctggaaagaaaagaggacccacaagggtaaagaaggaggagacatcttcttcagatcatggtactaaggatcagagtcatgtgacttgttacaagtgtcacaagaaa
ggacactttgctaatcaatgttccaagaagaggaaaggtaagcaacaacatcagtagtttgcacggagtgcaaatgcttcagctggagtggatgagtcagcaaccaagcttgaaattgccttcattaggtttcatgcctttctaccaataccacttctggtgttggttggtatgtggacaatggaatgtcatggcatatg
actttcagcaggaaaaatttcagcaagtttcaagaacaagatggccatacaagtggagttgggtgatgttgctacatacttggtggctggaatcaacaccatctccttcaagatgcctttagGCAAAAAGGAGTGTTGCCAGCTTTTGAGTCTGTTGAAATGCGTAGCTTGGCAGAAAGTATTTGCCGGGATATTCTTCG
AGGGAGTCCTGATGTGCAGTGGAACAACATCAAGGGTCTAGAGAATGCAAAACGACTTTTGAAAGAAGCAGTCGTCATGCCTATTAAGTACCCTAAGTATTTTAGAGGCCTTCTATCGCCATGGAAAGGGATTCTTCTATTTGGCCCTCCTGGAACGGGAAAGACAATGCTTGCTAAGGCAGTGGCTACTGAGTGCAAAA
CAACATTCTTCAACATTTCTGCGTCATCCATTGTTAGCAAGTGGCGTGGTGATTCAGAAAAACTTGTAAAAGTTCTTTTTGAGGTTGCAAGACATCATGCACCATCAACAATATTTTTGGACGAAATTGATGCTATCATTAGTCACCGTGGCGAAGGCCGCAGTGAGCATGAAGCAAGTAGGCGGTTAAAGACTGAGCTA
CTTATCCAGATGGATGGTTTAATGCAAACAAATGATCTCGTCTTTGTCCTGGCGGCGACTAATTTGCCGTGGGAACTGGATGGTGCCATGCTTCGACGTCTTGAAAAGCGTATTCTTGTGCCTCTTCCTGAGCCTGAAGCACGTCAAGCCATGTTTGAAGACCTTTTGCCTTTGCAACCTGGCTCTGAGCTACCATACGA
TCTTATGGTTGAAAGGACACAAGGCTACTCTGGTTCAGATATTCGTTTAGTTTGCAAAGAGGCTGCCATGCGGCCACTGAGGCGATTAATGGCCATGCTTGAAGAAAATGATGCAGCTGAATTACCGGAAGAAGACCTGCCCAGCATTGGTCCTGTCACAAGTGATGATATTATTGTAGCTCTTAAAATCACAAGGCCAT
CAGCACATCTTAATGAAAATCGTTACCAAAAGTTTAACGATGAGTATGGCAGCCAAGCAACATTTTGATGTTCCTTGCATCGAGTTGTCTTGTATACATAAAATGAAAGGATGGAATTTGTGGCGATTTTGAAAAGTGAGACGTTTTGCTAGTGATCATTGATTGTACAGGGGGTATTGTTCTTTCATTCATTTGAAGCC
CTATATCTATCTCTTCAAGCGCATAATTATATTGGCATCAATAATTAGTAATTAGGTCATGCTGATTTTAATGCTTTTAATTTGAGGCATTAGTTTGATTAAAATTTTGGAGAATAAATACTTTGAGCTGGGTTTATATCCCATTTGATTAAAATTTTGGAGAATAAATACTTTGAGCTGGGTTTATATCCCATATCTAT
TGAAGCCTGTGATTTGCAATTAGTATGTTACATTAGAAATATATCTTCGGACTTGAAAGTGTACATTACATTGTTATCTTCATGACGCCGGAATGAGTTTAGTCTTGATTCCTCAAAGCTGAACACAGTAATATTTTCAAGTGGCAAGTCAACTTACGCTTCATCATAAGTTTC
Intron 8 GTGAGAGGCT ... TGTTGGTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 58.39 | 67 | 94 | 25 |
| A2 | 53.23 | 58 | 66 | 39 |
| A3 | 57.14 | 75 | 100 | 34 |
| A4 | 51.91 | 63 | 68 | 20 |
| A5 | 64.29 | 25 | 45 | 22 |
| A6 | 56.4 | 126 | 163 | 1 |
| A7 | 55.38 | 166 | 206 | 13 |
| A8 | 59.46 | 90 | 132 | 6 |
| A9 | 55.56 | 168 | 210 | 9 |
| A10 | 56.1 | 144 | 184 | 11 |
>TRINITY_DN107296_c4_g2_i1 from sample A4 / Example spliced isoformGAAAACGGTCAGGAGGGTTTTGATGAACGTACGAGTGTGGCAGTCAATGGAAATGGCAGCAATACAAGGAACTCTGCGGGTTTGGCCGTCTATGAACAGTTTTTATGCCAGGAAAACAGCGGAACAGAGTTTGCTGGTGTATCTGTAGGGAGATCGGCAGCGAAACCAAAATGACCAATGCCGGAATTGGATAAAATGTT
GTCCCCAGTATGCATTGGAAAACTTTTACAGTAATGGCTATAAATTAATGTTGAAAAACAGCGTTTTTCTGGAACTTATTGGAAAAATAAGTCCTGAGTGAACATTGTATCATTCCACCATGTACAAGCTTCATTACTCTTCCGTCCAGTGAAGGCCCTGTGAGAGGTTGAACTACTTTTTATGCTTGTGAAGGGCAAAT
TGAACCTGTTAGAGGTTGTTGATTTTGGCTGAAATGTATTTTTTTTTGAGTTGTGATCCAAAAAGGCATCGGAGGAATGACAAACTTTGGGATATTAGGTCTCAATGAGTGTGACAGATTAGAAGGAGACTACAATTTCACCCCTTGAAAGTGCAGCTTGCATATGGTTATGGAGGAGATTGATCTTTAGGGCACAATCT
AGGGAAAAGTAACAATTCTTTCCAATCCTCAACAATTATCTCTGTAAGAGAAGAGGGTTGCTAAAGCAAAAAGGATTCTTTTGGATTTTATAAAGGACCACCTGATTCCTCACAGGCAAGGGAAATCAACAAAGGAAATGTTTGATGCATTGACAAGTTTGTATCAAAGTGTCAATATTGTCAGGAAGATGCTCTTAAAG
GACAGATTCACACAAACATGCATGAGTAATTCAGACATTGTGGAGGGCTACCTTATGAAGATCAACGATCTTAGAAAACAACTCTTTGCTATTGATATGAAGATCAAAGATGAGGAATTAGTGCCTTTTGTACTTTATGGTTTCTCCCTTATTTGGGAAGCCTTTGTTCAGGGTGTATGTGCTCTGGAAAACCTCCCAAC
TTATGAGAAACCTTGGGGCATCATTGTCTAAGAAGAAACAACACAAGAAACAATGCCAGGTCGAATAGAAGAGGACCAAGAGTTTACGCTTATCAGGAAGTGAGGAAAGCTGGAAAGAAAAGAGGACCCACAAGGGTAAAGAAGGAGGAGACATCTTCTTCAGATCATGGTACTAAGGATCAGAGTCATGTGACTTGTTA
CAAGTGTCACAAGAAAGGACACTTTACTAATCAATGTTCCAAGAAGAGGAAAGGTAAGCAACAACATCAGTAGTTTGCATGGAGCGCAAATGCTTCAGCTGGAGTGGATGAATCGGCAACCAAGCTTGAAATTGCCTTCATTAGGTTTCATGCCTTTCTACCAATACCACTTCTGGTGTTGGTTGGTATGTGGACAATGG
AATGTCATGGCATATGACTTTCAGCAGGAAAAATTTCAGCAAGTTTCAAGAACAAGATGGCCATACAAGTGGAGTTGGGTGATGTTGCTACATACTTGGTGGCTGGAATCAACACCATCTCCTTCAAGATGCCTTTAGGCAAAAAGGAGTGTTGCCAGCTTTTGAGTCTGTTGAAATGCGTAACTTGGCAGAAAGTATTT
GCCGGGATATTCTTCGAGGGAGTCCTGATGTGCAGTGGAACAACATCAAGGGTCTAGAGAATGCAAAACGACTTTTGAAAGAAGCAGTCGTCATGCCTATTAAGTACCCTAAGTATTTTAGAGGCCTTCTATCGCCATGGAAAGGGATTCTTCTATTTGGCCCTCCTGGAACGGGAAAGACAATGCTTGCTAAGGCAGTG
GCTACTGAGTGCAAAACAACATTCTTCAACATTTCTGCGTCATCCATTGTTAGCAAGTGGCGTGGTGATTCAGAAAAACTTGTAAAAGTTCTTTTTGAGGTTGCAAGACATCATGCACCATCAACAATATTTTTGGACGAAATTGATGCTATCATTAGTCACCGTGGCGAAGGCCGCAGTGAGCATGAAGCAAGTAGGCG
GTTAAAGACTGAGCTACTTATCCAGATGGATGGTTTAATGCAAACAAATGATCTCGTCTTTGTCCTGGCGGCGACTAATTTGCCGTGGGAACTGGATGGTGCCATGCTTCGACGTCTTGAAAAGCGTATTCTTGTGCCTCTTCCTGAGCCTGAAGCACGTCAAGCCATGTTTGAAGACCTTTTGCCTTTGCAACCTGGCT
CTGAGCTACCATACGATCTTATGGTTGAAAGGACACAAGGCTACTCTGGTTCAGATATTCGTTTAGTTTGCAAAGAGGCTGCCATGCGGCCACTGAGGCGATTAATGGCCATGCTTGAAGAAAATGATGCAGCTGAATTACCGGAAGAAGACCTGCCCAGCATTGGTCCTGTCACAAGTGATGATATTATTGTAGCTCTT
AAAATCACAAGGCCATCAGCACATCTTAATGAAAATCGTTACCAAAAGTTTAACGATGAGTATGGCAGCCAAGCAACATTTTGATGTTCCTTGCATCGAGTTGTCTATGTATACATAAAATGAAAGGATGGAATTTGTGGCGATTTTGAAAAGTGAGACGTTTTGCTAGTGATCATTGATTGTACAGGGGGTATTGTTCT
TTCATTCATTTGAAGCCCTATATCTATCTCTTCAAGCGCATAATTATATTGGCATCAATAATTAGTAATTAGGTCATGCTGATTTTAATGCTTTTAATTTGAGGCATTAGTTTGATTAAAATTTTGGAGAATAAATACTTTGAGCTGGGTTTATATCCCATTTGATTAAAATTTTGGAGAATAAATACTTTGAGCTGGGT
TTATATCCCATATCTATTGAAGCCTGTGATTTGCAATTAGTATGTTACATTAGAAATATATCTTCGGACTTGAAAGTGTACATTACATTGTTATCTTCATGACGCCGGAATGAGTTTAGTCTTGATTCCTCAAAGCTGAACACAGTAATATTTTCAAGTGGCAAGCCAACTTACGCTTCATCATAAGTTTCCAAGTTTTG
ACATTGACATAATTTTTGCCACTATTAGAGTTTGAACACATATAGCACG
>TRINITY_DN107296_c4_g2_i6 from sample A4 / Example unspliced isoform:GAAAACGGTCAGGAGGGTTTTGATGAACGTACGAGTGTGGCAGTCAATGGAAATGGCAGCAATACAAGGAACTCTGCGGGTTTGGCCGTCTATGAACAGTTTTTATGCCAGGAAAACAGCGGAACAGAGTTTGCTGGTGTATCTGTAGGGAGATCGGCAGCGAAACCgtgagaggctttgtcgtttttttaatttaactt
ttctttttgctctttccagctttttctttgcaaaaaattcttccaaggggtgacatcattacggatctatattttctctgcctgctcttcctttgatatttatgattttcatggtgttttgacataataaatcaatttcccagtgttgtcgaattttttttcccagcgttagtgtgatagtggcatctgtttttattata
aatatggtggttacatgaaaatgtgcatatggttatatgcaatggtttttctactttttattttgatattttgtttagttattgacattcaccttttcgctgttggtcagAAAATGACCAATGCCGGAATTGGATAAAATGTTGTCCCCAGTATGCATTGGAAAACTTTTACAGTAATGGCTATAAATTAATGTTGAAAA
ACAGCGTTTTTCTGGAACTTATTGGAAAAATAAGTCCTGAGTGAACATTGTATCATTCCACCATGTACAAGCTTCATTACTCTTCCGTCCAGTGAAGGCCCTGTGAGAGGTTGAACTACTTTTTATGCTTGTGAAGGGCAAATTGAACCTGTTAGAGGTTGTTGATTTTGGCTGAAATGTATTTTTTTTTGAGTTGTGAT
CCAAAAAGGCATCGGAGGAATGACAAACTTTGGGATATTAGGTCTCAATGAGTGTGACAGATTAGAAGGAGACTACAATTTCACCCCTTGAAAGTGCAGCTTGCATATGGTTATGGAGGAGATTGATCTTTAGGGCACAATCTAGGGAAAAGTAACAATTCTTTCCAATCCTCAACAATTATCTCTGTAAGAGAAGAGGG
TTGCTAAAGCAAAAAGGATTCTTTTGGATTTTATAAAGGACCACCTGATTCCTCACAGGCAAGGGAAATCAACAAAGGAAATGTTTGATGCATTGACAAGTTTGTATCAAAGTGTCAATATTGTCAGGAAGATGCTCTTAAAGGACAGATTCACACAAACATGCATGAGTAATTCAGACATTGTGGAGGGCTACCTTATG
AAGATCAACGATCTTAGAAAACAACTCTTTGCTATTGATATGAAGATCAAAGATGAGGAATTAGTGCCTTTTGTACTTTATGGTTTCTCCCTTATTTGGGAAGCCTTTGTTCAGGGTGTATGTGCTCTGGAAAACCTCCCAACTTATGAGAAACCTTGGGGCATCATTGTCTAAGAAGAAACAACACAAGAAACAATGCC
AGGTCGAATAGAAGAGGACCAAGAGTTTACGCTTATCAGGAAGTGAGGAAAGCTGGAAAGAAAAGAGGACCCACAAGGGTAAAGAAGGAGGAGACATCTTCTTCAGATCATGGTACTAAGGATCAGAGTCATGTGACTTGTTACAAGTGTCACAAGAAAGGACACTTTACTAATCAATGTTCCAAGAAGAGGAAAGGTAA
GCAACAACATCAGTAGTTTGCACGGAGTGCAAATGCTTCAGCTGGAGTGGATGAGTCGGCAACCAAGCTTGAAATTGCCTTCATTAGGTTTCATGCCTTTCTACCAATACCACTTCTGGTGTTGGTTGGTATGTGGACAATGGAATGTCATGGCATATGACTTTCAGCAGGAAAAATTTCAGCAAGTTTCAAGAACAAGA
TGGCCATACAAGTGGAGTTGGGTGATGTTGCTACATACTTGGTGGCTGGAATCAACACCATCTCCTTCAAGATGCCTTTAGG
Intron 9 GTGAGAGGCT ... GAAAGTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 59.87 | 63 | 94 | 22 |
| A2 | 56.41 | 51 | 66 | 14 |
| A3 | 56.82 | 76 | 100 | 20 |
| A4 | 57.63 | 50 | 68 | 20 |
| A5 | 66.18 | 23 | 45 | 14 |
| A6 | 57.8 | 119 | 163 | 3 |
| A7 | 56.44 | 159 | 206 | 12 |
| A8 | 60.27 | 87 | 132 | 15 |
| A9 | 57.53 | 155 | 210 | 4 |
| A10 | 57.32 | 137 | 184 | 0 |
>TRINITY_DN119297_c1_g1_i7 from sample A3 / Example spliced isoformGAAAACGGTCAGGAGGGTTTTGATGAACGTACGAGTGTGGCAGTCAATGGAAATGGCAGCAATACAAGGAACTCTGCGGGTTTGGCCGTCTATGAACAGTTTTTATGCCAGGAAAACAGCGGAACAGAGTTTGCTGGTGTATCTGTAGGGAGATCGGCAGCGAAACCGTTGCATATGGTTATGGAGGAGATTGATCTTTA
GGGCACAATCTAGGGAAAAGTAACAGTTCTTTCCAATCCTCAACAATTATCTCTGTAAGAGAAGAGGGTTGCTAAAGCAAAAAGGATTCTTTTGGATTTTATAAAGGACCACCTGATTCCTCACAGGCAAGGGAAATCAACAAAGGAAATGTTTGATGCATTGACAAGTTTGTATCAAAGTGTCAATATTGTCAGGAAGA
TGCTCTTAAAGGACAGATTCACACAAACATGCATGAGTAATTCAGACATTGTGGTGGGCTACCTTATGAAGATCAACGATCTTAGAAAACAACTCTTTGCTATTGATATGAAGATCAAAGATGAGGAATTAGTGCCTTTTGTACTTTATGGTTTCTCCCTTATTTGGGAAGCCTTTGTTCAGGGTGTATGTGCTCTGGAA
AACCTCCCAACTTATGAGAAACCTTGGGGCATCATTGTCTAAGAAGAAACAACACAAGAAACAATGCCAGGTCGAATAGAAGAGGACCAAGAGTTTACGCTTATCAGGAAGTGAGGAAAGCTGGAAAGAAAAGAGGACCCACAAGGGTAAAGAAGGAGGAGACATCTTCTTCAGATCATGGTACTAAGGATCAGAGTCAT
GTGACTTGTTACAAGTGTCACAAGAAAGGACACTTTACTAATCAATGTTCCAAGAAGAGGAAAGGTAAGCAACAACATCAGTAGTTTGCATGGAGCGCAAATGCTTCAGCTGGAGTGGATGAATCGGCAACCAAGCTTGAAATTGCCTTCATTAGGTTTCATGCCTTTCTACCAATACCACTTCTGGTGTTGGTTGGTAT
GTGGACAATGGAATGTCATGGCATATGACTTTCAGCAGGAAAAATTTCAGCAAGTTTCAAGAACAAGATGGCCATACAAGTGGAGTTGGGTGATGTTGCTACATACTTGGTGGCTGGAATCAACACCATCTCCTTCAAGATGCCTTTAGG
>TRINITY_DN119297_c1_g1_i13 from sample A3 / Example unspliced isoform:GAAAACGGTCAGGAGGGTTTTGATGAACGTACGAGTGTGGCAGTCAATGGAAATGGCAGCAATACAAGGAACTCTGCGGGTTTGGCCGTCTATGAACAGTTTTTATGCCAGGAAAACAGCGGAACAGAGTTTGCTGGTGTATCTGTAGGGAGATCGGCAGCGAAACCgtgagaggctttgtcgtttttttaatttaactt
ttctttttgctctttccagctttttctttgcaaaaaattcttccaaggggtgacatcattacggatctatattttctctgcctgctcttcctttgatatttatgattttcatggtgttttgacataataaatcaatttcccagtgttgtcgaattttttttcccagcgttagtgtgatagtggcatctgtttttattata
aatatggtggttacatgaaaatgtgcatatggttatatgcaatggtttttctactttttattttgatattttgtttagttattgacattcaccttttcgctgttggtcagaaaatgaccaatgccggaattggataaaatgttgtccccagtatgcattggaaaacttttacagtaatggctataaattaatgttgaaaa
acagcgtttttctggaacttattggaaaaataagtcctgagtgaacattgtatcattccaccatgtacaagcttcattactcttccgtccagtgaaggccctgtgagaggttgaactactttttatgcttgtgaagggcaaattgaacctgttagaggttgttgattttggctgaaatgtatttttttttgagttgtgat
ccaaaaaggcatcggaggaatgacaaactttgggatattaggtctcaatgagtgtgatagattagaaggagactacaatttcaccccttgaaagtgcagGTTGCATATGGTTATGGAGGAGATTGATCTTTAGGGCACAATCTAGGGAAAAGTAACAGTTCTTTCCAATCCTCAACAATTATCTCTGTAAGAGAAGAGGG
TTGCTAAAGCAAAAAGGATTCTTTTGGATTTTATAAAGGACCACCTGATTCCTCACAGGCAAGGGAAATCAACAAAGGAAATGTTTGATGCATTGACAAGTTTGTATCAAAGTGTCAATATTGTCAGGAAGATGCTCTTAAAGGACAGATTCACACAAACATGCATGAGTAATTCAGACATTGTGGTGGGCTACCTTATG
AAGATCAACGATCTTAGAAAACAACTCTTTGCTATTGATATGAAGATCAAAGATGAGGAATTAGTGCCTTTTGTACTTTATGGTTTCTCCCTTATTTGGGAAGCCTTTGTTCAGGGTGTATGTGCTCTGGAAAACCTCCCAACTTATGAGAAACCTTGGGGCATCATTGTCTAAGAAGAAACAACACAAGAAACAATGCC
AGGTCGAATAGAAGAGGACCAAGAGTTTACGCTTATCAGGAAGTGAGGAAAGCTGGAAAGAAAAGAGGACCCACAAGGGTAAAGAAGGAGGAGACATCTTCTTCAGATCATGGTACTAAGGATCAGAGTCATGTGACTTGTTACAAGTGTCACAAGAAAGGACACTTTACTAATCAATGTTCCAAGAAGAGGAAAGGTAA
GCAACAACATCAGTAGTTTGCATGGAGCGCAAATGCTTCAGCTGGAGTGGATGAATCGGCAACCAAGCTTGAAATTGCCTTCATTAGGTTTCATGCCTTTCTACCAATACCACTTCTGGTGTTGGTTGGTATGTGGACAATGGAATGTCATGGCATATGACTTTCAGCAGGAAAAATTTCAGCAAGTTTCAAGAACAAGA
TGGCCATACAAGTGGAGTTGGGTGATGTTGCTACATACTTGGTGGCTGGAATCAACACCATCTCCTTCAAGATGCCTTTAGGCAAAAAGGAGTGTTGTCAGCTTTTGAGTCTGTTGAAATGCGTAGCTTGGCAGAAAGTATTTGCCGGGATATTCTTCGAGGGAGTACTGATGTGCAGTGGAACAACATCAAGGGTCTAG
AGAATGCAAAACGACTTTTGAAAGAAGCAGTCGTCATGCCTATTAAGTACCCTAAGTATTTTAGAGGCCTTCTATCGCCATGGAAAGGGATTCTTCTATTTGGCCCTCCTGGAACGGGAAAGACAATGCTTGCTAAGGCAGTGGCTACTGAGTGCAAAACAACATTCTTCAACATTTCTGCGTCATCCATTGTTAGCAAG
TGGCGTGGTGATTCAGAAAAACTTGTAAAAGTTCTTTTTGAGGTTGCAAGACATCATGCACCATCAACAATATTTTTGGACGAAATTGATGCTATCATTAGTCACCGTGGCGAAGGCCGCAGTGAGCATGAAGCAAGTAGGCGGTTAAAGACTGAGCTACTTATCCAGATGGATGGTTTAATGCAAACAAATGATCTCGT
CTTTGTCCTGGCGGCGACTAATTTGCCGTGGGAACTGGATGGTGCCATGCTTCGACGTCTTGAAAAGCGTATTCTTGTGCCTCTTCCTGAGCCTGAAGCACGTCAAGCCATGTTTGAAGACCTTTTGCCTTTGCAACCTGGCTCTGAGCTACCATACGATCTTATGGTTGAAAGGACACAAGGCTATTCTGGTTCAGATA
TTCGTTTAGTTTGCAAAGAGGCTGCCATGCGGCCACTGAGGCGATTAATGGCCATGCTTGAAGAAAATGATGCAGCTGAATTACCGGAAGAAGACCTGCCCAGCATTGGTCCTGTCACAAGTGATGATATTATTGTAGCTCTTAAAATCACAAGGCCATCAGCACATCTTAATGAAAATCGTTACCAAAAGTTTAACGAT
GAGTATGGCAGCCAAGCAACATTTTGATGTTCCTTGCATCGAGTTGTCTTGTATACATAAAATGAAAGGATGGAATTTGTGGCGATTTTGAAAAGTGAGACGTTTTGCTAGTGATCATTGATTGTACAGGGGGTATTGTTCTTTCATTCATTTGAAGCCCTATATCTATCTCTTCAAGCGCATAATTATATTGGCATCAA
TAATTAGTAATTAGGTCATGCTGATTTTAATGCTTTTAATTTGAGGCATTAGTTTGATTAAAATTTTGGAGAATAAATACTTTGAGCTGGGTTTATATCCCATTTGATTAAAATTTTGGAGAATAAATACTTTGAGCTGGGTTTATATCCCATATCTATTGAAGCCTGTGATTTGCAATTAGTATGTTACATTAGAAATA
TATCTTCGGACTTGAAAGTGTACATTACATTGTTATCTTCATGACGCC
Intron 10 GTGAGAGGCT ... ATGCCTTTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 27.71 | 186.9 | 93.4 | 49.9 |
| A2 | 22.14 | 181 | 66 | 36.9 |
| A3 | 23.48 | 220.1 | 98.9 | 36.2 |
| A4 | 23.99 | 163.5 | 66.3 | 36.9 |
| A5 | 24.45 | 93.4 | 45 | 15.4 |
| A6 | 21.65 | 469.3 | 163 | 96.4 |
| A7 | 22.08 | 547.5 | 204.6 | 105.6 |
| A8 | 24.88 | 367.7 | 131.4 | 112.2 |
| A9 | 23.32 | 491.1 | 207.4 | 91.2 |
| A10 | 24.53 | 438.3 | 182.3 | 102.6 |
>TRINITY_DN119868_c1_g3_i11 from sample A2 / Example spliced isoformGGCGATTAGAGGATGATGAGGATGATTATGAAAGTGCATACCAAAAGAGGCCTGAGTCCAGAGAAAATAATGACCACGGGTTGAAGTCTGGCGGCACGAGTTCGAATATGTGGGGGAGCTCGTCGTCATCGTAATACGGGATCCCCTGAACATTTCCCACAGCCATGACGGACGAGCCAGCCATTACCAGATGGAAATTT
GAGGATTTTGAGGAAGTGTATGATGCGAAATTCGGAGTTAAACGGGAAAATGCGGGGGCTAATGGACATTCTCGAGTGGAAAACGGTCAGGAGGGTTTTGATGAACGTACGAGTGTGGCAGTCAATGGAAATGGCAGCAATACAAGGAACTCTGCGGGTTTGGCCGTCTATGAACAGTTTTTATGCCAGGAAAACAGCGG
AACAGAGTTTGCTGGTGTATCTGTAGGGAGATCGGCAGCGAAACCGCAAAAAGGAGTGTTGCCAGCTTTTGAGTCTGTTGAAATGCGTAACTTGGCAGAAAGTATTTGCCGGGATATTCTTCGAGGGAGTCCTGATGTGCAGTGGAACAACATCAAGGGTCTAGAGAATGCAAAACGACTTTTGAAAGAAGCAGTCGTCA
TGCCTATTAAGTACCCTAAGTATTTTAGAGGCCTTCTATCGCCATGGAAAGGGATTCTTCTATTTGGCCCTCCTGGAACGGGAA
>TRINITY_DN119868_c1_g3_i15 from sample A2 / Example unspliced isoform:TGACTAATGAATGGTTTTGACTATAAATTTCGAATATATTTTTTTAAATTTAATTATTTTTTTTATAATTTTTGTACTTGATGTATCCTAGCCGTATCCGGATCTTGGCTTTTCAAAAATCTGGTGGATCTGTATCTGGATCCAGAACTGGATCCAGATCTGGATCTGAATGAGTTTCTTTAAACTTGTAAAGGTATACC
TTGGATAGAGCTCATGATACAATCTATGAGGTTTATAAATCCAAATGTGCTTAACATAAAATCACATCCAAATGGGTCCTGGAGTGCAGTTATTGAGTTTATATATTTCATCAATCGGGATGCAATTTTGAAGCTCCTGGGTTGCAAGCTGGTCTAGGCACAGAAATCCATACTCGTCATATTTATGATTTATCACATCA
TAATAGACACAGAAATCGAGCAAACCTCATCCAGACATTTAGTTATGCAAACTTATATTTAATATTATTATTTTGATCAATTAAATAATCCTCTTTCAATGTTAGGAGGAGAATGGAAGGATTAGAAACACGAGGACGGGTTAAGGGCGAGTTCCCGTTCTTCCTCCTGAGTAAGGGAGGCTTATGATTATAAACTAATC
CAAGGAAAATTGATAGGTAAGGGGTTAGGATTCATGAATGGAAAAGTATTTATCTGTGATATCCTTGAGATAAGAAGGGGATACGAAGGGTGGGAATGAACAACCTTCTTGATCATGGATAGAAAATTGGTTATATATTTGAATTTGGATTGCTATGGCCTTCCAATTGGCTATTCTTTTAGTGACGAATTCATAGAAGG
TTGTTCCTTTCCATTGCTTGCCACTTCTTCGGATTTGATGGACATTTCCCTTTGAAATGACCATATTCATGGTATGCTTTGCACTTGAATGGAATATTCTCATAATCAAGGTTTTGTCAGTGAATCTCTTTCCAAATTTTAATAATATTTTTCTCAAGTGTGGGTTTGTTGAGGATTGAGGTTGCATATATTCTAGCATG
GGAGGCCATATTTTGTTGAGGTTCAGGGTTACATAGATTCTAGCATAGGAGGCCACCTTCCTCTCAATAATCAAATAATATGGTTGAATGAAGGGGCTAACACCTTCTTTGACCAACTTCGGACTTGATTCATTCCAAAATTCAAAGAGAAGAAAGGGACTCTAAAGCCAAGTAGTGGTTTTCAAACAAATATCAATTCT
AGGATTGAAGCTCCTAGCCCAATGTTTCATACACAACGTAACTTGCTTAAGAAATCAAGGTTCTCCTTCAAATTTTTTTCTACCTTTGCCTAGGAGGAAAAAATCACTAAACATCACCCTCTACTCGACAAGGAGAGGGATAGATAGCCTTCGCACATGACATGAAAAGCGTGCTCCAAGCGCGATTAATTGTAATCATG
ACAAGCTTCATTCAAAACTGGGTGTAGCTCTAGCATGCCTGAGGACATCTGACAAATGTCAAAATCATAGTGCTGCTATCTAATAAAATTATTCCAAATAGCTTTAAATTTGAATTTGATTTGACCTTGCCATCTTTTGATGCTATACTTCATTGCAGTGGCTCGAGCATTTTGAAATAACATGTACGCAAAAGGGGGCC
TCGACCTATGTTACATCATCCAACCACGCTCACCTTCTCTCCATGTGTGGAGCCTAAAAGAGATCAAAACTACTTTGAAGTTTCCAATCCTCTAATATCCAATTCATGATGATTTTCTCCTAAAACCAAAGTACAAATTTACTATTGAATTTTAAATTTGAAGATATCCTCCATGATGCCCAAAAGGTTAAGTTTAATTA
CAAAGTTAATATCACTTCTATGCATAAATCCTTAAACCCTTACTTGAAAAGGATTGGAAGTAAGCTTCCTTGTGAAGGTATGCAATGAGATCCTCGTAGGGTCTTTCTGGCTTTCTTATACACTATTGATACGCTAGGATTTTCACCTCGCTTCTAATTTTAATTTTTTTCTGCTACTTTTCATTTATATTTATAATATT
AACAAGTCACCTGTCACTCACTTCCCCCTTAAATTTACGTGCCACACTGAACTGGGCTGGACTTTAGTCTGGCGGCACGAGTTCGAATATGTGGGGGAGCTCGTCGTCATCGTAATACGGGATCCCCTGAACATTTCCCACAGCCATGACGGACGAGCCAGCCATTACCAGATGGAAATTTGAGGATTTTGAGGAAGTGT
ATGATGCGAAATTCGGAGTTAAACGGGAAAATGCGGGGGCTAATGGACATTCTCGAGTGGAAAACGGTCAGGAGGGTTTTGATGAACGTACGAGTGTGGCAGTCAATGGAAATGGCAGCAATACAAGGAACTCTGCGGGTTTGGCCGTCTATGAACAGTTTTTATGCCAGGAAAACAGCGGAACAGAGTTTGCTGGTGTA
TCTGTAGGGAGATCGGCAGCGAAACCgtgagaggctttgtcgtttttttaatttaacttttctttttgctctttccagctttttctttgcaaaaaattcttccaaggggtgacatcattacggatctatattttctctgcctgctcttcctttgatatttatgattttcatggtgttttgacataataaatcaatttccc
agtgttgtcgaattttttttcccagcgttagtgtgatagtggcatctgtttttattataaatatggtggttacatgaaaatgtgcatatggttatatgcaatggtttttctactttttattttgatattttgtttagttattgacattcaccttttcgctgttggtcagaaaatgaccaatgccggaattggataaaatg
ttgtccccagtatgcattggaaaacttttacagtaatggctataaattaatgttgaaaaacagcgtttttctggaacttattggaaaaataagtcctgagtgaacattgtatcattccaccatgtacaagcttcattactcttccgtccagtgaaggccctgtgagaggttgaactactttttatgcttgtgaagggcaa
attgaacctgttagaggttgttgattttggctgaaatgtatttttttttgagttgtgatccaaaaaggcatcggaggaatgacaaactttgggatattaggtctcaatgagtgtgatagattagaaggagactacaatttcaccccttgaaagtgcaggttgcatatggttatggaggagattgatctttagggcacaat
ctagggaaaagtaacagttctttccaatcctcaacaattatctctgtaagagaagagggttgctaaagcaaaaaggattcttttggattttataaaggaccacctgattcctcacaggcaagggaaatcaacaaaggaaatgtttgatgcattgacaagtttgtatcaaagtgtcaatattgtcaggaagatgctcttaa
aggacagattcacacaaacatgcatgagtaattcagacattgtggtgggctaccttatgaagatcaacgatcttagaaaacaactctttgctattgatatgaagatcaaagatgaggaattagtgccttttgtactttatggtttctcccttatttgggaagcctttgttcagggtgtatgtgctctggaaaacctccca
acttatgagaaaccttggggcatcattgtctaagaagaaacaacacaagaaacaatgccaggtcgaatagaagaggaccaagagtttacgcttatcaggaagtgaggaaagctggaaagaaaagaggacccacaagggtaaagaaggaggagacatcttcttcagatcatggtactaaggatcagagtcatgtgacttgt
tacaagtgtcacaagaaaggacactttgctaatcaatgttccaagaagaggaaaggtaagcaacaacatcagtagtttgcatggagcgcaaatgcttcagctggagtggatgaatcggcaaccaagcttgaaattgccttcattaggtttcatgcctttctaccaataccacttctggtgttggttggtatgtggacaat
ggaatgtcatggcatatgactttcagcaggaaaaatttcagcaagtttcaagaacaagatggccatacaagtggagttgggtgatgttgctacatacttggtggctggaatcaacaccatctccttcaagatgcctttagGCAAAAAGGAGTGTTGCCAGCTTTTGAGTCTGTTGAAATGCGTAACTTGGCAGAAAGTAT
TTGCCGGGATATTCTTCGAGGGAGTCCTGATGTGCAGTGGAACAACATCAAGGGTCTAGAGAATGCAAAACGACTTTTGAAAGAAGCAGTCGTCATGCCTATTAAGTACCCTAAGTATTTTAGAGGCCTTCTATCGCCATGGAAAGGGATTCTTCTATTTGGCCCTCCTGGAACGGGAAAGACAATGCTTGCTAAGGCAG
TGGCTACTGAGTGCAAAACAACATTCTTCAACATTTCTGCGTCATCCATTGTTAGCAAGTGGCGTGGTGATTCAGAAAAACTTGTAAAAGTTCTTTTTGAGGTTGCAAGACATCATGCACCATCAACAATATTTTTGGACGAAATTGATGCTATCATTAGTCACCGTGGCGAAGGCCGCAGTGAGCATGAAGCAAGTAGG
CGGTTAAAGACTGAGCTACTTATCCAGATGGATGGTTTAATGCAAACAAATGATCTCGTCTTTGTCCTGGCGGCGACTAATTTGCCGTGGGAACTGGATGGTGCCATGCTTCGACGTCTTGAAAAGCGTATTCTTGTGCCTCTTCCTGAGCCTGAAGCACGTCAAGCCATGTTTGAAGACCTTTTGCCTTTGCAACCTGG
CTCTGAGCTACCATACGATCTTATGGTTGAAAGGACACAAGGCTACTCTGGTTCAGATATTCGTTTAGTTTGCAAAGAGGCTGCCATGCGGCCACTGAGGCGATTAATGGCCATGCTTGAAGAAAATGATGCAGCTGAATTACCGGAAGAAGACCTGCCCAGCATTGGTCCTGTCACAAGTGATGATATTATTGTAGCTC
TTAAAATCACAAGGCCATCAGCACATCTTAATGAAAATCGTTACCAAAAGTTTAACGATGAGTATGGCAGCCAAGCAACATTTTGATGTTCCTTGCATCGAGTTGTCTTGTATACATAAAATGAAAGGATGGAATTTGTGGCGATTTTGAAAAGTGAGACGTTTTGCTAGTGATCATTGATTGTACAGGGGGTATTGTTC
TTTCATTCATTTGAAGCCCTATATCTATCTCTTCAAGCGCATAATTATATTGGCATCAATAATTAGTAATTAGGTCATGCTGATTTTAATGCTTTTAATTTGAGGCATTAGTTTGATTAAAATTTTGGAGAATAAATACTTTGAGCTGGGTTTATATCCCATTTGATTAAAATTTTGGAGAATAAATACTTTGAGCTGGG
TTTATATCCCATTTGATTAAAATTTTGGAGAATAATCTATTGAAGCCTGTGATTTGCAATTAGTATGTTACATTAGAAATATATCTTCGGACTTGAAAGTGT
Intron 11 GTGAGAGGCT ... ATGCCTTTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 27.94 | 187 | 93 | 52 |
| A2 | 22.32 | 181 | 66 | 38 |
| A3 | 23.61 | 220 | 98 | 38 |
| A4 | 24.12 | 162 | 65 | 38 |
| A5 | 24.08 | 93 | 45 | 14 |
| A6 | 21.83 | 471 | 163 | 100 |
| A7 | 22.09 | 545 | 203 | 106 |
| A8 | 24.29 | 374 | 131 | 109 |
| A9 | 23.11 | 494 | 204 | 93 |
| A10 | 24.54 | 435 | 180 | 103 |
>TRINITY_DN125281_c1_g1_i5 from sample A1 / Example spliced isoformATTTACGTGCCACACTGAACTGGGCTGGACTTTAGTCTGGCGGCACGAGTTCGAATCTGTGGGGGAGCTCGTCATCATCGTAATACGGGATCCCCTGAACATTTCCCACAGCCATGACGGACGAGCCAGCCATTACCAGATGGAAATTTGAGGATTTTGAGGAAGTGTATGATGCGAAATTCGGAGTTAAACGGGAAAAT
GCGGGGGCTAATGGACATTCTCGAGTGGAAAACGGTCAGGAGGGTTTTGATGAACGTACGAGTGTGGCAGTCAATGGAAATGGCAGCAATACAAGGAACTCTGCGGGTTTGGCCGTCTATGAACAGTTTTTATGCCAGGAAAACAGCGGAACAGAGTTTGCTGGTGTATCTGTAGGGAGATCGGCAGCGAAACCGCAAAA
AGGAGTGTTGCCAGCTTTTGAGTCTGTTGAAATGCGTAGCTTGGCAGAAAGTATTTGCCGGGATATTCTTCGAGGGAGTCCCGATGTGCAGTGGAACAACATCAAGGGTCTAGAGAATGCAAAACGACTTTTGAAAGAAGCAGTCGTCATGCCTATTAAGTACCCTAAGTATTTTAGAGGCCTTCTATCGCCATGGAAAG
GGATTCTTCTATTTGGCCCTCCTGGAACGGGAAAG
>TRINITY_DN125281_c1_g1_i21 from sample A1 / Example unspliced isoform:ATTTACGTGCCACACTGAACTGGGCTGGACTTTAGTCTGGCGGCACGAGTTCGAATCTGTGGGGGAGCTCGTCATCATCGTAATACGGGATCCCCTGAACATTTCCCACAGCCATGACGGACGAGCCAGCCATTACCAGATGGAAATTTGAGGATTTTGAGGAAGTGTATGATGCGAAATTCGGAGTTAAACGGGAAAAT
GCGGGGGCTAATGGACATTCTCGAGTGGAAAACGGTCAGGAGGGTTTTGATGAACGTACGAGTGTGGCAGTCAATGGAAATGGCAGCAATACAAGGAACTCTGCGGGTTTGGCCGTCTATGAACAGTTTTTATGCCAGGAAAACAGCGGAACAGAGTTTGCTGGTGTATCTGTAGGGAGATCGGCAGCGAAACCgtgaga
ggctttgtcgtttttttaatttaacttttctttttgctctttccagctttttctttgcaaaaaattcttccaaggggtgacatcattacggatctatattttctctgcctgctcttcctttgatatttatgattttcatggtgttttgacataataaatcaatttcccagtgttgtcgaatttttttttcccagcgttag
tgtgatagtggcatctgtttttattataaatatggtggttacatgaaaatgtgcatatggttatatgcaatggtttttctactttttattttgatattttgtttagttattgacattcaccttttcgctgttggtcagaaaatgaccaatgccggaattggataaaatgttgtccccagtatgcattggaaaacttttac
agtaatggctataaattaatgttgaaaaacagcgtttttctggaacttattggaaaaataagtcctgagtgaacattgtatcattccaccatgtacaagcttcattactcttccgtccagtgaaggccctgtgagaggttgaactactttttatgcttgtgaagggcaaattgaacctgttagaggttgttgattttggc
tgaaatgtatttttttttgagttgtgatccaaaaaggcatcggaggaatgacaaactttgggatattaggtctcaatgagtgtgatagattagaaggagactacaatttcaccccttgaaagtgcaggttgcatatggttatggaggagattgatctttagggcacaatctagggaaaagtaacagttctttccaatcct
caacaattatctctgtaagagaagagggttgctaaagcaaaagggattcttttggattttataaaggaccacctgattcctcacaggcaagggaaatcaacaaaggaaatgtttgatgcattgacaagtttgtatcaaagtgtcaatattgtcaggaagatgctcttaaaggacagattcacacaaacatgcatgagtaa
ttcagacattgtggagggctaccttatgaagatcaacgatcttagaaaacaactctttgctattgatatgaagatcaaagatgaggaattagtgccttttgtactttatggtttctcccttatttgggaagcctttgttcagggtgtatgtgctctggaaaacctcccaacttatgagaaaccttggggcatcattgtct
aagaagaaacaacacaagaaacagtgccagctcgaatagaagaggaccaagagtttacacttatcaggaaggtgaggaaagctggaaagaaaagaggacccacaagggtaaagaaggaggagacatcttcttcagatcatggtactaaggatcagagtcatgtgacttgttacaagtgtcacaagaaaggacactttgct
aatcaatgttccaagaagaggaaaggtaagcaacaacatcagtagtttgcacggagtgcaaatgcttcagctggagtggatgagtcagcaaccaagcttgaaattgccttcattaggtttcatgcctttctaccaataccacttctggtgttggttggtatgtggacaatggaatgtcatggcatatgactttcagcagg
aaaaatttcagcaagtttcaagaacaagatggccatacaagtggagttgggtgatgttgctacatacttggtggctggaatcaacaccatctccttcaagatgcctttagGCAAAAAGGAGTGTTGCCAGCTTTTGAGTCTGTTGAAATGCGTAGCTTGGCAGAAAGTATTTGCCGGGATATTCTTCGAGGGAGTCCTGA
TGTGCAGTGGAACAACATCAAGGGTCTAGAGAATGCAAAACGACTTTTGAAAGAAGCAGTCGTCATGCCTATTAAGTACCCTAAGTATTTTAGAGGCCTTCTATCGCCATGGAAAGGGATTCTTCTATTTGGCCCTCCTGGAACGGGAAAGACAATGCTTGCTAAGGCAGTGGCTACTGAGTGCAAAACAACATTCTTCA
ACATTTCTGCGTCATCCATTGTTAGCAAGTGGCGTGGTGATTCAGAAAAACTTGTAAAAGTTCTTTTTGAGGTTGCAAGACATCATGCACCATCAACAATATTTTTGGACGAAATTGATGCTATCATTAGTCACCGTGGCGAAGGCCGCAGTGAGCATGAAGCAAGTAGGCGGTTAAAGACTGAGCTACTTATCCAGATG
GATGGTTTAATGCAAACAAATGATCTCGTCTTTGTCCTGGCGGCGACTAATTTGCCGTGGGAACTGGATGGTGCCATGCTTCGACGTCTTGAAAAGCGTATTCTTGTGCCTCTTCCTGAGCCTGAAGCACGTCAAGCCATGTTTGAAGACCTTTTGCCTTTGCAACCTGGCTCTGAGCTACCATACGATCTTATGGTTGA
AAGGACACAAGGCTACTCTGGTTCAGATATTCGTTTAGTTTGCAAAGAGGCTGCCATGCGGCCACTGAGGCGATTAATGGCCATGCTTGAAGAAAATGATGCAGCTGAATTACCGGAAGAAGACCTGCCCAGCATTGGTCCTGTCACAAGTGATGATATTATTGTAGCTCTTAAAATCACAAGGCCATCAGCACATCTTA
ATGAAAATCGTTACCAAAAGTTTAACGATGAGTATGGCAGCCAAGCAACATTTTGATGTTCCTTGCATCGAGTTGTCTATGTATACATAAAATGAAAGGATGGAATTTGTGGCGATTTTGAAAAGTGAGACGTTTTGCTAGTGATCATTGATTGTACAGGGGGTATTGTTCTTTCATTCATTTGAAGCCCTATATCTATC
TCTTCAAGCGCATAATTATATTGGCATCAATAATTAGTAATTAGGTCATGCTGATTTTAATGCTTTTAATTTGAGGCATTAGTTTGATTAAAATTTTGGAGAATAAATACTTTGAGCTGGGTTTATATCCCATTTGATTAAAATTTTGGAGAATAAATACTTTGAGCTGGGTTTATATCCCATATCTATTGAAGCCTGTG
ATTTGCAATTAGTATGTTACATTAGAAATATATCTTCGGACTTGAAAGTGTACATTACATTGTTATCTTCATGACGCCGGAATGAGTTTAGTCTTGATTCCTCAAAGCTGAACACAGTAATATTTTCAAGTGGCAAGTCAACTTACGCTTCATCATAAGTTTC