sp|Q9LNE7|CML7_ARATH ----> Calmodulin-like protein 7
Intron 1 GTATGTTGAT ... GATCTAACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 23.74 | 29 | 9 | 2 |
| A2 | 41.18 | 20 | 14 | 2 |
| A3 | 16.13 | 26 | 5 | 0 |
| A4 | 26.69 | 13.8 | 5 | 2 |
| A5 | 33.33 | 8 | 4 | 7 |
| A6 | 23.47 | 75.3 | 23 | 0 |
| A7 | 23.94 | 44.8 | 14 | 2 |
| A8 | 22.97 | 77.3 | 23 | 2 |
| A9 | 28.08 | 48.8 | 19 | 0 |
| A10 | 29.64 | 28.5 | 12 | 1 |
>TRINITY_DN112773_c0_g2_i10 from sample A2 / Example spliced isoformTCCACGTCCACATATTCGCCATTATCCGCTTCAAGAATTTATTCGGTTCCTGTTATTACGCGTCGTGGTTTTCAAGATCTTTATGTGCAGACGTCAGAAATCCAGTATTACGTTTGTATTTCTAAAACGAATTGGCATGGATAAAGTGGCTGAGACAACGGTATTGCATGTTGGAGTGATTTTCCGAGCAATAGAGGATT
GTTATTTGTCAATCTTGTTTTTCGCTTCGTTTTTATTTTCATATTATCCAGCGGCTGGTGCAAATGAACATTTTATTGGAAATTTGAAGCATTCACTAGGTAGATTTGAAGATGTCCAGAAAACCGCCTTTGAATTTATACGGAAGGCAGTTTCTGACTTCTTGTGTGCATCTGAAGCAGCGTCAGCGGTTAAAATTTCA
GGAAACTGCGAGCAAAGTGAAAATATGAGTTTTTGCTGCGTTTAGATGCTGGACGAAACTATGCTAAAAGCTCGACGGAATTGAGTATTTTGATGGATTAAAGCGGCTCATTTACAGGGAAGCGAGATAAATGGAGCAAATCAATAAAAGTCGTGTAACCGGCATGGCGTAGAGCAGATTCAAGTAAAACATTTACAAGA
AAAGTGAGAAGCTTGAGAGAACTTGACCGAAATGCCTTCAGCGTACAATTGAAGCGGATACTTTTGCAGACGATATCAAAAGCTCTAAAAGTTTTGAGAGAAATTTGTCTGGTGCAAACGATTAGAACAATTTGAGATACGCGAAAGATTAAATTCTCCCATATTTTAAAGAATGGGTTGTTTAGGCCTATAGGTTGTGT
AAATGTTAATCAGTCGACAATTCAAGTTCAAAGTTAGATTATGATACTGAAGAAATATTCCGTGTAAATCCAAACAAAGACGATATTGCTTTAATTAGCTTTCAAAGATTCACAGCACCGCGTTTGCTTTCGTTCTGGCATGAAGTTTTGAAGAACAAAGTTTTTACAACTGTAAGATGATGGACACCTACCACGGAGAT
AAAATTGTAACCAATAGTGGACTACCTTTAAAAGTCTCACTCAACAGAAGGCATTTTTCAATAGTTCCATCGCAGGAATTTATCCCGTCAGTTTTCAAGCTTTCAGCATCAAAGAACAGTCGCAAGATTGCAATTCGCCGCTTTTTTGAAAAAAATGATGTAAAGGAGGGCCTAACAAAGGGGTCTTCTCACCTTAGTAC
CCTCGGTTCTTTTTTCTGCAGCCTTTTGCCTTTCAAGAGCTGGAAGGAAACGAGAACGATTGCCTCCTCAAACAAATTTCCGCATACTGAGGAGCGTGACTGTTTTTCATCTCTAGTTTTGGTGTCTAATCAGGATGCACCCCAGAGCAATATATCTAGTAATCTTCAACAGTTTCCGAGTAAGGTCAATGTAATTACTG
ATCCAAATTTTGTGTGTGGCCATTTCTCCCTGTTGCCCCCTATTATTTATCCTAATTCAAGACTGATTATGGAGTTAAATGGACTTCATAGTCACTGCAATGGTGCATTTCAAAGGTCAGATACAGAAACAGAAACGAGGAATTCAGCAAGCCATATTCTCCATTTACGTTCACTCGGTTTTCTCAGGTGCACTCCAAGA
ACCCTTTTTTTAAATGGATATGGAGAAACAGAGGAAAACAGTAATAAATGGGACACAGCCAGCCATATTTGGTTCTCTTTATTTTTTCCAAAAGAAGACCATGGAAGCCAAAAAATACCAATCTTCGCAAGGCTTCAAGGATGGCCTAATACTTTTCTGTCAGAAGCTGTGAGGAGTAAATTTGAAAGAATATCTACAGC
CATTGAGCTGCCTAAATTATCAGTCGCAGCTGCGTCCCTAACGGGGCTTATGGCTAGGATTCCTCGAGATGGGCAAATGCAGCAAGGATTTCCAGATAGAGAAAAGCTATTTTCTGTACAAGAGTTTTTCCATTATACTGAAATAGAAGGAAGAAGGCTTTTTCAGGAGCTGGATAGAGATGGGGATGGTCACGCAACAT
TGTCTGATATTGAAGAAGGCTTTTTCAGGAGCTGGATAGAGATGGGGATGGTCACGCAACATTGTCTGATATTGAAGAGGCAATCAGAAGGAGAAAGCTTCCTCCATTCTATGCTTCTGAAATCATAAAATCAGCAAAAAAACATAATTGGATTTCAAGATCATTTAGTTGGAATGAGTTCTCTTCCCTGATTAAGGAAA
AGGAACCAAAGATGCTCTCTGCTTTCAACTCTGTCAGTCTCTGCAACTGTGGAACAATTCATAAGAATAAGCTGAAGGCTTTACTGCAGAGTGCAAGCCTTCCAGCAACTGAAACGAATGTTACAGCAATGCTGAATTTTCTCAATTCAGACAAGGAAGATTCAGTATCATACAGTCAGTTTCGCAACTTCATGTTGTTT
GTACCAACAGATCTCATCGTTAATGATCCATGGAAAATATGGTTGGAGTCAGCTACAAGAAGGTCCACTGACATGCTGTTACAAACAGTACCTGCAGTAGGAAAGAATCGAAGCTATACTCAAGATATATGGAAGATTGGCCTCTTGGCATCAAGTCTTTCTATTGCAAGTCCAATTCAAAAACTGTCTCATCTTGCAGG
ACAAATGTGGAAAATGAGTCTCTTCACGAGAGTAAACCACGAATTAGTGTATAGCAGAAGGTAGAACTACTGCTGTTTCCAGTTTTGAAATTTGTTTGATGATAGATGTGAGGCAGCTTCTCTGCTTATTCAACAGGCTAATATATATATATATATCTTTTATTGGATCAAATACCATGGCATATTCGATGTACATATAA
TACAACATAACTACTATGGCATGCTCTATATACATATTATAATGATGATTGCCATCCACTGAACACCCATGCAAACCATTCCAGGTTTGATCTTCTTGTGGCTGGATTTTGTTATATCACATGCGAATTTACTGAAATTTCATTTACTTGCCTAAGAGTCAATTTACCTGCATACAAGTTATGAATCAAGTGCAGGTGAA
TAAATTGAAATAAGCGCTTACGTGATTTTGCCTATTTTGCAGACTTTTTTTGTTAGCAATAGCAATAAAGCCAAGTATGTTTGGCTATATCATACATTTATT
>TRINITY_DN112773_c0_g2_i6 from sample A2 / Example unspliced isoform:TCCACGTCCACATATTCGCCATTATCCGCTTCAAGAATTTATTCGGTTCCTGTTATTACGCGTCGTGGTTTTCAAGATCTTTATGTGCAGACGTCAGAAATCCAGTATTACGTTTGTATTTCTAAAACGAATTGGCATGGATAAAGTGGCTGAGACAACGGTATTGCATGTTGGAGTGATTTTCCGAGCAATAGAGGATT
GTTATTTGTCAATCTTGTTTTTCGCTTCGTTTTTATTTTCATATTATCCAGCGGCTGGTGCAAATGAACATTTTATTGGAAATTTGAAGCATTCACTAGGTAGATTTGAAGATGTCCAGAAAACCGCCTTTGAATTTATACGGAAGGCAGTTTCTGACTTCTTGTGTGCATCTGAAGCAGCGTCAGCGGTTAAAATTTCA
GGAAACTGCGAGCAAAGTGAAAATATGAGTTTTTGCTGCGTTTAGATGCTGGACGAAACTATGCTAAAAGCTCGACGGAATTGAGTATTTTGATGGATTAAAGCGGCTCATTTACAGGGAAGCGAGATAAATGGAGCAAATCAATAAAAGTCGTGTAACCGGCATGGCGTAGAGCAGATTCAAGTAAAACATTTACAAGA
AAAGTGAGAAGCTTGAGAGAACTTGACCGAAATGCCTTCAGCGTACAATTGAAGCGGATACTTTTGCAGACGATATCAAAAGCTCTAAAAGTTTTGAGAGAAATTTGTCTGGTGCAAACGATTAGAACAATTTGAGATACGCGAAAGATTAAATTCTCCCATATTTTAAAGAATGGGTTGTTTAGGCCTATAGGTTGTGT
AAATGTTAATCAGTCGACAATTCAAGTTCAAAGTTAGATTATGATACTGAAGAAATATTCCGTGTAAATCCAAACAAAGACGATATTGCTTTAATTAGCTTTCAAAGATTCACAGCACCGCGTTTGCTTTCGTTCTGGCATGAAGTTTTGAAGAACAAAGTTTTTACAACTGTAAGATGATGGACACCTACCACGGAGAT
AAAATTGTAACCAATAGTGGACTACCTTTAAAAGTCTCACTCAACAGAAGGCATTTTTCAATAGTTCCATCGCAGGAATTTATCCCGTCAGTTTTCAAGCTTTCAGCATCAAAGAACAGTCGCAAGATTGCAATTCGCCGCTTTTTTGAAAAAAATGATGTAAAGGAGGGCCTAACAAAGGGGTCTTCTCACCTTAGTAC
CCTCGGTTCTTTTTTCTGCAGCCTTTTGCCTTTCAAGAGCTGGAAGGAAACGAGAACGATTGCCTCCTCAAACAAATTTCCGCATACTGAGGAGCGTGACTGTTTTTCATCTCTAGTTTTGGTGTCTAATCAGGATGCACCCCAGAGCAATATATCTAGTAATCTTCAACAGTTTCCGAGTAAGGTCAATGTAATTACTG
ATCCAAATTTTGTGTGTGGCCATTTCTCCCTGTTGCCCCCTATTATTTATCCTAATTCAAGACTGATTATGGAGTTAAATGGACTTCATAGTCACTGCAATGGTGCATTTCAAAGGTCAGATACAGAAACAGAAACGAGGAATTCAGCAAGCCATATTCTCCATTTACGTTCACTCGGTTTTCTCAGGTGCACTCCAAGA
ACCCTTTTTTTAAATGGATATGGAGAAACAGAGGAAAACAGTAATAAATGGGACACAGCCAGCCATATTTGGTTCTCTTTATTTTTTCCAAAAGAAGACCATGGAAGCCAAAAAATACCAATCTTCGCAAGGCTTCAAGGATGGCCTAATACTTTTCTGTCAGAAGCTGTGAGGAGTAAATTTGAAAGAATATCTACAGC
CATTGAGCTGCCTAAATTATCAGTCGCAGCTGCGTCCCTAACGGGGCTTATGGCTAGGATTCCTCGAGATGGGCAAATGCAGCAAGGATTTCCAGATAGAGAAAAGCTATTTTCTGTACAAGAGTTTTTCCATTATACTGAAATAGAAGGAAGAAGGCTTTTTCAGGAGCTGGATAGAGATGGGGATGGTCACGCAACAT
TGTCTGATATTGAAGAAGGCTTTTTCAGGAGCTGGATAGAGATGGGGATGGTCACGCAACATTGTCTGATATTGAAGAGGCAATCAGAAGGAGAAAGCTTCCTCCATTCTATGCTTCTGAAATCATAAAATCAGCAAAAAAACATAATTGGATTTCAAGATCATTTAGTTGGAATGAGTTCTCTTCCCTGATTAAGGAAA
AGGAACCAAAGATGCTCTCTGCTTTCAACTCTGTCAGTCTCTGCAACTGTGGAACAATTCATAAGAATAAGCTGAAGGCTTTACTGCAGAGTGCAAGCCTTCCAGCAACTGAAACGAATGTTACAGCAATGCTGAATTTTCTCAATTCAGACAAGGAAGATTCAGTATCATACAGTCAGTTTCGCAACTTCATGTTGTTT
GTACCAACAGATCTCATCGTTAATGATCCATGgtatgttgattcgaaccatgactcagaagttgaatgttgttttatatatcatgagttgttagcctttgaggaaattattaggaaggcatgcaaaattgataaacatcactttatgttggtgtgaatcaattaacatgttcatttcatatagtatcactatcacatttg
ttactgatctaacagGAAAATATGGTTGGAGTCAGCTACAAGAAGGTCCACTGACATGCTGTTACAAACAGTACCTGCAGTAGGAAAGAATCGAAGCTATACTCAAGATATATGGAAGGTAAGTTCATCAATATCTTTAAGATTCTTAGTATAAATATAAAAAAATATCATATGATTTATGAGCTGTTAAAAGTTGAACC
ATATTCTGTTATCCTATAGTCCTTTTACCTTTAAG
Intron 2 GTCAGTTATT ... TGAACTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 25.71 | 39 | 11 | 16 |
| A2 | 19.57 | 37 | 14 | 4 |
| A3 | 19.44 | 29 | 8 | 6 |
| A4 | 16.88 | 32 | 7 | 6 |
| A5 | 15.38 | 11 | 0 | 4 |
| A6 | 14.55 | 47 | 8 | 8 |
| A7 | 13.98 | 80 | 8 | 18 |
| A8 | 15.2 | 53 | 7 | 12 |
| A9 | 11.94 | 59 | 5 | 11 |
| A10 | 18.64 | 48 | 6 | 16 |
>TRINITY_DN112421_c0_g1_i1 from sample A3 / Example spliced isoformTTACGTTTGTATTTCTAAAACGAATTGGCATGGATAAAGTGGCTGAGACAACGGTATTGCATGTTGGAGTGATTTTCCGAGCAATAGAGGATTGTTATTTGTCAATCTTGTTTTTCGCTTCGTTTTTATTTTCATATTATCCAGCGGCTGGTGCAAATGAACATTTTATTGGAAATTTGAAGCATTCACTAGGTAGATTT
GAAGATGTCCAGAAAACCGCCTTTGAATTTATACGGAAGGCAGTTTCTGACTTCTTGTGTGCATCTGAAGCAGCGTCAGCGGTTAAAATTTCAGGAAACTGCGAGCAAAGTGAAAATATGAGTTTTTGCTGCGTTTAGATGCTGGACGAAACTATGCTAAAAGCTCGACGGAATTGAGTATTTTGATGGATTAAAGCGGC
TCATTTACAGGGAAGCGAGATAAATGGAGCAAATCAATAAAAGTCGTGTAACCGGCATGGCGTAGAGCAGATTCAAGTAAAACATTTACAAGAAAAGTGAGAAGCTTGAGAGAACTTGACCGAAATGCCTTCAGCGTACAATTGAAGCGGATACTTTTGCAGACGATATCAAAAGCTCTAAAAGTTTTGAGAGAAATTTG
TCTGGTGCAAACGATTAGAACAATTTGAGATACGCGAAAGATTAAATTCTCCCATATTTTAAAGAATGGGTTGTTTAGGCCTATAGGTTGTGTAAATGTTAATCAGTCGACAATTCAAGTTCAAAGTTAGATTATGATACTGAAGAAATATTCCGTGTAAATCCAAACAAAGACGATATTGCTTTAATTAGCTTTCAAAG
ATTCACAGCACCGCGCTTGCTTTCGTTCTGGCATGAAGTTTTGAAGAACAAAGTTTTGACAACTGTAAGATGATGGACACCTACCACGGAGATAAAATTGTAACCAATAGTGGACTACCTTTAAAAGTCTCACTCAACAGAAGGCATTTTTCAATAGTTCCATCGCAGGAATTTATCCCGTCAGTTTTCAAGCTTTCAGC
ATCAAAGAACAGTCGCAAGATTGCAATTCGCCGCTTTTTTGAAAAAAATGATGTAAAGGAGGGCCTAACAAAGGGGTCTTCTCACCTTAGTACCCTCGGTTCTTTTTTCTGCAGCCTTTTGCCTTTCAAGAGCTGGAAGGAAACGAGAACGATTGCCTCCTCAAACAAATTTCCGCATACTGAGGAGCGTGACTGTTTTT
CATCTCTAGTTTTGGTGTCTAATCAGGATGCACCCCAGAGCAATATATCTAGTAATCTTCAACAGTTTCCGAGCAAGGTCAATGTAATTACTGATCCAAATTTTGTGTGTGGCCATTTCTCCCTGTTGCCCCCTATTATTTATCCTAATTCAAGACTGATTATGGAGTTAAATGGACTTCATAGTCACTGCAATGGTGCA
TTTCAAAGGTCAGATACAGAAACAGAAACGAGGAATTCAGCAAGCCATATTCTCCATTTACGTTCACTCGGTTTTCTCAGGTGCACTCCAAGAACCCTTTTTTTAAATGGATGTGGAGAAACAGAGGAAAACAGTGATAAATGGGACACAGCCAGCCATATTTGGTTCTCTTTATTTTTTCCAAAAGAAGACCATGGAAG
CCAAAAAATACCAATCTTCGCAAGGCTTCAAGGATGGCCTAATACTTTTCTGTCAGAAGCTGTGAGGAGTAAATTTGAAAGAATATCTACAGCCATTGAGCTGCCTAAATTATCAGTCGCAGCTGCGTCCCTAACGGGGCTTATGGCTAGGATTCCTCGAGATGGGCAAATGCAGCAAGGATTTCCAGATAGAGAAAAGC
TATTTTCTGTACAAGAGTTTTTCCATTATACTGAAATAGAAGGAAGAAGGCTTTTTCAGGAGCTGGATAGAGATGGGGATGGTCACGCAACATTGTCTGATATTGAAGAGGCAATCAGAAGGAGAAAGCTTCCTCCATTCTATGCTTCTGAAATCATAAAATCAGCAAAAAAACATAATTGGATTTCAAGATCATTTAGT
TGGAATGAGTTCTCTTCCCTGATTAAGGAAAAGGAACCAAAGATGCTCTCTGCTTTCAACTCTGTCAGTCTCTGCAACTGTGGAACAATTCATAAGAATAAGCTGAAGGCTTTACTGCAGAGTGCAAGCCTTCCAGCAACTGAAACGAATGTTACAGCAATGCTGAATTTTCTCAATTCAGACAAGGAAGATTCAGTATC
ATACAGTCAGTTTCGCAACTTCATGTTGTTTGTACCAACAGATCTCATCGTTAATGATCCATGGAAAATATGGTTGGAGTCAGCTACAAGAAGGTCCACTGACATGCTGTTACAAACAGTACCTGCAGTAGGAAAGAATCGAAGCTATACTCAAGATATATGGAAGATTGGCCTCTTGGCGTCAAGTCTTTCTATTGCAA
GTCCAATTCAAAAACTGTCTCATCTTGCAGGACAAATGTGGAAAATGAGTCTCTTCACGAGAGTAAACCACGAATTAGTGTATAGCAGAAGGTAGAACTACTGCTGTTTCCAGTTTTGAAATTTGTTTGATGATAGATGTGAGGCAGCTTCTCTGCTTATTCAACAGGCTAATATATATATATATATCTTTTATTGGATC
AAATACCATGGCATATTCGATGTACATATAATACAACATAACTACTATGGCATGCTCTATATACATATTATAATGATGATTGCCATCCACTGAACACCCATGCAAACCATTCCAGGTTTGATCTTCCTGTGGCTGGATTTTGTTATATCA
>TRINITY_DN112421_c0_g1_i4 from sample A3 / Example unspliced isoform:TTACGTTTGTATTTCTAAAACGAATTGGCATGGATAAAGTGGCTGAGACAACGGTATTGCATGTTGGAGTGATTTTCCGAGCAATAGAGGATTGTTATTTGTCAATCTTGTTTTTCGCTTCGTTTTTATTTTCATATTATCCAGCGGCTGGTGCAAATGAACATTTTATTGGAAATTTGAAGCATTCACTAGGTAGATTT
GAAGATGTCCAGAAAACCGCCTTTGAATTTATACGGAAGGCAGTTTCTGACTTCTTGTGTGCATCTGAAGCAGCGTCAGCGGTTAAAATTTCAGGAAACTGCGAGCAAAGTGAAAATATGAGTTTTTGCTGCGTTTAGATGCTGGACGAAACTATGCTAAAAGCTCGACGGAATTGAGTATTTTGATGGATTAAAGCGGC
TCATTTACAGGGAAGCGAGATAAATGGAGCAAATCAATAAAAGTCGTGTAACCGGCATGGCGTAGAGCAGATTCAAGTAAAACATTTACAAGAAAAGTGAGAAGCTTGAGAGAACTTGACCGAAATGCCTTCAGCGTACAATTGAAGCGGATACTTTTGCAGACGATATCAAAAGCTCTAAAAGTTTTGAGAGAAATTTG
TCTGGTGCAAACGATTAGAACAATTTGAGATACGCGAAAGATTAAATTCTCCCATATTTTAAAGAATGGGTTGTTTAGGCCTATAGGTTGTGTAAATGTTAATCAGTCGACAATTCAAGTTCAAAGTTAGATTATGATACTGAAGAAATATTCCGTGTAAATCCAAACAAAGACGATATTGCTTTAATTAGCTTTCAAAG
ATTCACAGCACCGCGCTTGCTTTCGTTCTGGCATGAAGTTTTGAAGAACAAAGTTTTGACAACTGTAAGATGATGGACACCTACCACGGAGATAAAATTGTAACCAATAGTGGACTACCTTTAAAAGTCTCACTCAACAGAAGGCATTTTTCAATAGTTCCATCGCAGGAATTTATCCCGTCAGTTTTCAAGCTTTCAGC
ATCAAAGAACAGTCGCAAGATTGCAATTCGCCGCTTTTTTGAAAAAAATGATGTAAAGGAGGGCCTAACAAAGGGGTCTTCTCACCTTAGTACCCTCGGTTCTTTTTTCTGCAGCCTTTTGCCTTTCAAGAGCTGGAAGGAAACGAGAACGATTGCCTCCTCAAACAAATTTCCGCATACTGAGGAGCGTGACTGTTTTT
CATCTCTAGTTTTGGTGTCTAATCAGGATGCACCCCAGAGCAATATATCTAGTAATCTTCAACAGTTTCCGAGCAAGGTCAATGTAATTACTGATCCAAATTTTGTGTGTGGCCATTTCTCCCTGTTGCCCCCTATTATTTATCCTAATTCAAGACTGATTATGGAGTTAAATGGACTTCATAGTCACTGCAATGGTGCA
TTTCAAAGGTCAGATACAGAAACAGAAACGAGGAATTCAGCAAGCCATATTCTCCATTTACGTTCACTCGGTTTTCTCAGGTGCACTCCAAGAACCCTTTTTTTAAATGGATGTGGAGAAACAGAGGAAAACAGTGATAAATGGGACACAGCCAGCCATATTTGGTTCTCTTTATTTTTTCCAAAAGAAGACCATGGAAG
CCAAAAAATACCAATCTTCGCAAGGCTTCAAGGATGGCCTAATACTTTTCTGTCAGAAGCTGTGAGGAGTAAATTTGAAAGAATATCTACAGCCATTGAGCTGCCTAAATTATCAGTCGCAGCTGCGTCCCTAACGGGGCTTATGGCTAGGATTCCTCGAGATGGGCAAATGCAGCAAGGATTTCCAGATAGAGAAAAGC
TATTTTCTGTACAAGAGTTTTTCCATTATACTGAAATAGAAGgtcagttattttagctgttgtgcagtatagaaattagatagataagtttttacctttctgggatttttcttcaccaatcctacttattctatgtaaacccgttggcctatttttaaggaaatagtgtgtgaaaacatattattttctagatgtttttc
ctcccaattcggaggatggtattgtgtgataggatacttcttatttcctactacttaattatccatctttctttgcttcatattgcaactaaagagctgtttgctttaattgttcttacaaaattctatagcaattggatctgaagagggcagtaatttgaacttcagGAAGAAGGCTTTTTCAGGAGCTGGATAGAGAT
GGGGATGGTCACGCAACATTGTCTGATATTGAAGAGGCAATCAGAAGGAGAAAGCTTCCTCCATTCTATGCTTCTGAAATCATAAAATCAGCAAAAAAACATAATTGGATTTCAAGATCATTTAGTTGGAATGAGTTCTCTTCCCTGATTAAGGAAAAGGAACCAAAGATGCTCTCTGCTTTCAACTCTGTCAGTCTCTG
CAACTGTGGAACAATTCATAAGAATAAGCTGAAGGCTTTACTGCAGAGTGCAAGCCTTCCAGCAACTGAAACGAATGTTACAGCAATGCTGAATTTTCTCAATTCAGACAAGGAAGATTCAGTATCATACAGTCAGTTTCGCAACTTCATGTTGTTTGTACCAACAGATCTCATCGTTAATGATCCATGGAAAATATGGT
TGGAGTCAGCTACAAGAAGGTCCACTGACATGCTGTTACAAACAGTACCTGCAGTAGGAAAGAATCGAAGCTATACTCAAGATATATGGAAGATTGGCCTCTTGGCGTCAAGTCTTTCTATTGCAAGTCCAATTCAAAAACTGTCTCATCTTGCAGGACAAATGTGGAAAATGAGTCTCTTCACGAGAGTAAACCACGAA
TTAGTGTATAGCAGAAGGTAGAACTACTGCTGTTTCCAGTTTTGAAATTTGTTTGATGATAGATGTGAGGCAGCTTCTCTGCTTATTCAACAGGCTAATATATATATATATATCTTTTATTGGATCAAATACCATGGCATATTCGATGTACATATAATACAACATAACTACTATGGCATGCTCTATATACATATTATAAT
GATGATTGCCATCCACTGAACACCCATGCAAACCATTCCAGGTTTGATCTTCCTGTGGCTGGATTTTGTTATATCA
Intron 3 GTATGTTGAT ... TTGGAGGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 34.62 | 17 | 9 | 1 |
| A2 | 43.75 | 18 | 14 | 2 |
| A3 | 18.52 | 22 | 5 | 0 |
| A4 | 38.46 | 8 | 5 | 2 |
| A5 | 44.44 | 5 | 4 | 7 |
| A6 | 29.11 | 56 | 23 | 0 |
| A7 | 31.82 | 30 | 14 | 2 |
| A8 | 28.05 | 59 | 23 | 0 |
| A9 | 33.33 | 38 | 19 | 0 |
| A10 | 34.29 | 23 | 12 | 1 |
>TRINITY_DN124005_c0_g1_i4 from sample A1 / Example spliced isoformGCTGAGACAACGGTATTGCATGTTGGAGTGATTTTCCGAGCAATAGAGGATTGTTATTTGTCAATCTTGTTTTTCGCTTCGTTTTTATTTTCATATTATCCAGCGGCTGGTGCAAATGAACATTTTATTGGAAATTTGAAGCATTCACTAGGTAGATTTGAAGATGTCCAGAAAACCGCCTTTGAATTTATACGGAAGGC
AGTTTCTGACTTCTTGTGTGCATCTGAAGCAGCGTCAGCGGTTAAAATTTCAGGAAACTGCGAGCAAAGTGAAAATATGAGTTTTTGCTGCGTTTAGATGCTGGACGAAACTATGCTAAAAGCTCGACGGAATTGAGTATTTTGATGGATTAAAGCGGCTCATTTACAGGGAAGCGAGATAAATGGAGCAAATCAATAAA
AGTCGTGTAACCGGCATGGCGTAGAGCAGATTCAAGTAAAACATTTACAAGAAAAGTGAGAAGCTTGAGAGAACTTGACCGAAATGCCTTCAGCGTACAATTGAAGCGGATACTTTTGCAGACGATATCAAAAGCTCTAAAAGTTTTGAGAGAAATTTGTCTGGTGCAAACGATTAGAACAATTTGAGATACGCGAAAGA
TTAAATTCTCCCATATTTTAAAGAATGGGTTGTTTAGGCCTATAGGTTGTGTAAATGTTAATCAGTCGACAATTCAAGTTCAAAGTTAGATTATGATACTGAAGAAATATTCCGTGTAAATCCAAACAAAGACGATATTGCTTTAATTAGCTTTCAAAGATTCACAGCACCGCGTTTGCTTTCGTTCTGGCATGAAGTTT
TGAAGAACAAAGTTTTTACAACTGTAAGATGATGGACACCTACCACGGAGATAAAATTGTAACCAATAGTGGACTACCTTTAAAAGTCTCACTCAACAGAAGGCATTTTTCAATAGTTCCATCGCAGGAATTTATCCCGTCAGTTTTCAAGCTTTCAGCATCAAAGAACAGTCGCAAGATTGCAATTCGCCGCTTTTTTG
AAAAAAATGATGTAAAGGAGGGCCTAACAAAGGGGTCTTCTCACCTTAGTACCCTCGGTTCTTTTTTCTGCAGCCTTTTGCCTTTCAAGAGCTGGAAGGAAACGAGAACGATTGCCTCCTCAAACAAATTTCCGCATACTGAGGAGCGTGACTGTTTTTCATCTCTAGTTTTGGTGTCTAATCAGGATGCACCCCAGAGC
AATATATCTAGTAATCTTCAACAGTTTCCGAGTAAGGTCAATGTAATTACTGATCCAAATTTTGTGTGTGGCCATTTCTCCCTGTTGCCCCCTATTATTTATCCTAATTCAAGACTGATTATGGAGTTAAATGGACTTCATAGTCACTGCAATGGTGCATTTCAAAGGTCAGATACAGAAACAGAAACGAGGAATTCAGC
AAGCCATATTCTCCATTTACGTTCACTCGGTTTTCTCAGGTGCACTCCAAGAACCCTTTTTTTAAATGGATGTGGAGAAACAGAGGAAAACAGTGATAAATGGGACACAGCCAGCCATATTTGGTTCTCTTTATTTTTTCCAAAAGAAGACCATGGAAGCCAAAAAATACCAATCTTCGCAAGGCTTCAAGGATGGCCTA
ATACTTTTCTGTCAGAAGCTGTGAGGAGTAAATTTGAAAGAATATCTACAGCCATTGAGCTGCCTAAATTATCAGTCGCAGCTGCGTCCCTAACGGGGCTTATGGCTAGGATTCCTCGAGATGGGCAAATGCAGCAAGGATTTCCAGATAGAGAAAAGCTATTTTCTGTACAAGAGTTTTTCCATTATACTGAAATAGAA
GGAAGAAGGCTTTTTCAGGAGCTGGATAGAGATGGGGATGGTCACGCAACATTGTCTGATATTGAAGAGGCAATCAGAAGGAGAAAGCTTCCTCCATTCTATGCTTCTGAAATCATAAAATCAGCAAAAAAACATAATTGGATTTCAAGATCATTTAGTTGGAATGAGTTCTCTTCCCTGATTAAGGAAAAGGAACCAAA
GATGCTCTCTGCTTTCAACTCTGTCAGTCTCTGCAACTGTGGAACAATTCATAAGAATAAGCTGAAGGCTTTACTGCAGAGTGCAAGCCTTCCAGCAACTGAAACGAATGTTACAGCAATGCTGAATTTTCTCAATTCAGACAAGGAAGATTCAGTATCATACAGTCAGTTTCGCAACTTCATGTTGTTTGTACCAACAG
ATCTCATCGTTAATGATCCATGCTACAAGAAGGTCCACTGACATGCTGTTACAAACAGTACCTGCAGTAGGAAAGAATCGAAGCTATACTCAAGATATATGGAAG
>TRINITY_DN124005_c0_g1_i9 from sample A1 / Example unspliced isoform:GCTGAGACAACGGTATTGCATGTTGGAGTGATTTTCCGAGCAATAGAGGATTGTTATTTGTCAATCTTGTTTTTCGCTTCGTTTTTATTTTCATATTATCCAGCGGCTGGTGCAAATGAACATTTTATTGGAAATTTGAAGCATTCACTAGGTAGATTTGAAGATGTCCAGAAAACCGCCTTTGAATTTATACGGAAGGC
AGTTTCTGACTTCTTGTGTGCATCTGAAGCAGCGTCAGCGGTTAAAATTTCAGGAAACTGCGAGCAAAGTGAAAATATGAGTTTTTGCTGCGTTTAGATGCTGGACGAAACTATGCTAAAAGCTCGACGGAATTGAGTATTTTGATGGATTAAAGCGGCTCATTTACAGGGAAGCGAGATAAATGGAGCAAATCAATAAA
AGTCGTGTAACCGGCATGGCGTAGAGCAGATTCAAGTAAAACATTTACAAGAAAAGTGAGAAGCTTGAGAGAACTTGACCGAAATGCCTTCAGCGTACAATTGAAGCGGATACTTTTGCAGACGATATCAAAAGCTCTAAAAGTTTTGAGAGAAATTTGTCTGGTGCAAACGATTAGAACAATTTGAGATACGCGAAAGA
TTAAATTCTCCCATATTTTAAAGAATGGGTTGTTTAGGCCTATAGGTTGTGTAAATGTTAATCAGTCGACAATTCAAGTTCAAAGTTAGATTATGATACTGAAGAAATATTCCGTGTAAATCCAAACAAAGACGATATTGCTTTAATTAGCTTTCAAAGATTCACAGCACCGCGTTTGCTTTCGTTCTGGCATGAAGTTT
TGAAGAACAAAGTTTTTACAACTGTAAGATGATGGACACCTACCACGGAGATAAAATTGTAACCAATAGTGGACTACCTTTAAAAGTCTCACTCAACAGAAGGCATTTTTCAATAGTTCCATCGCAGGAATTTATCCCGTCAGTTTTCAAGCTTTCAGCATCAAAGAACAGTCGCAAGATTGCAATTCGCCGCTTTTTTG
AAAAAAATGATGTAAAGGAGGGCCTAACAAAGGGGTCTTCTCACCTTAGTACCCTCGGTTCTTTTTTCTGCAGCCTTTTGCCTTTCAAGAGCTGGAAGGAAACGAGAACGATTGCCTCCTCAAACAAATTTCCGCATACTGAGGAGCGTGACTGTTTTTCATCTCTAGTTTTGGTGTCTAATCAGGATGCACCCCAGAGC
AATATATCTAGTAATCTTCAACAGTTTCCGAGTAAGGTCAATGTAATTACTGATCCAAATTTTGTGTGTGGCCATTTCTCCCTGTTGCCCCCTATTATTTATCCTAATTCAAGACTGATTATGGAGTTAAATGGACTTCATAGTCACTGCAATGGTGCATTTCAAAGGTCAGATACAGAAACAGAAACGAGGAATTCAGC
AAGCCATATTCTCCATTTACGTTCACTCGGTTTTCTCAGGTGCACTCCAAGAACCCTTTTTTTAAATGGATGTGGAGAAACAGAGGAAAACAGTGATAAATGGGACACAGCCAGCCATATTTGGTTCTCTTTATTTTTTCCAAAAGAAGACCATGGAAGCCAAAAAATACCAATCTTCGCAAGGCTTCAAGGATGGCCTA
ATACTTTTCTGTCAGAAGCTGTGAGGAGTAAATTTGAAAGAATATCTACAGCCATTGAGCTGCCTAAATTATCAGTCGCAGCTGCGTCCCTAACGGGGCTTATGGCTAGGATTCCTCGAGATGGGCAAATGCAGCAAGGATTTCCAGATAGAGAAAAGCTATTTTCTGTACAAGAGTTTTTCCATTATACTGAAATAGAA
GGAAGAAGGCTTTTTCAGGAGCTGGATAGAGATGGGGATGGTCACGCAACATTGTCTGATATTGAAGAGGCAATCAGAAGGAGAAAGCTTCCTCCATTCTATGCTTCTGAAATCATAAAATCAGCAAAAAAACATAATTGGATTTCAAGATCATTTAGTTGGAATGAGTTCTCTTCCCTGATTAAGGAAAAGGAACCAAA
GATGCTCTCTGCTTTCAACTCTGTCAGTCTCTGCAACTGTGGAACAATTCATAAGAATAAGCTGAAGGCTTTACTGCAGAGTGCAAGCCTTCCAGCAACTGAAACGAATGTTACAGCAATGCTGAATTTTCTCAATTCAGACAAGGAAGATTCAGTATCATACAGTCAGTTTCGCAACTTCATGTTGTTTGTACCAACAG
ATCTCATCGTTAATGATCCATGgtatgttgattcgaaccatgactcagaagttgaatgttgttttatatatcatgagttgttagcctttgaggaaattattaggaaggcatgcaaaattgataaacatcacttatgttggtgtgaatcaattaacatgttcatttcatatagtgtcactttcacattttgttagtgatct
aacacgaaaatattgttggaggcagCTACAAGAAGGTCCACTGACATGCTGTTACAAACAGTACCTGCAGTAGGAAAGAATCGAAGCTATACTCAAGATATATGGAAG