NA ----> NA
Intron 1 GTCTTAAAAA ... TTTGTAACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 15.79 | 8 | 0 | 3 |
| A2 | 31.25 | 11 | 4 | 6 |
| A3 | 15 | 17 | 3 | 3 |
| A4 | 25 | 3 | 1 | 1 |
| A5 | 0 | 6 | 0 | 0 |
| A6 | 6.25 | 30 | 1 | 3 |
| A7 | 20 | 20 | 1 | 9 |
| A8 | 18.18 | 9 | 0 | 4 |
| A9 | 15.79 | 32 | 4 | 8 |
| A10 | 21.74 | 27 | 3 | 12 |
>TRINITY_DN75897_c0_g1_i2 from sample A2 / Example spliced isoformGTGGTCCTTTTACGGGGACAATTACCCTTGCAGTGTTGACAATATTTACATGTTCTATCCTATCCAATCCAATCCAATCCAATGCGGGAGAGTGTTTTGGACCCCTCCTACCAAAGCCTTTGAAGGCGGGATCTCAATCTCCAGGCCCTCTGTAAACTCTGTATACATTGCGATTTCACAATGGCCGACGAAGATGATCT
CATTCGGCGATTCACTCGCACAGATTTGAACGACAATACTCCTCCCCACATTGACAGATCCACCTGGGCCGAGGTCGTAAGTGGGCGTAACGAAGAGGAAAATTATGAAGAGAAGGGTAGTAGGATCGGTACCTATAATAGGCGTAACGAAGAGGGAAATTATGAAGAGAAGGGTAGCAGGATCGGTACGTATAATGTTG
GGGGATTGCAGAAGAAGAATCGACATGATTGGCAGGAAGAAAAGCGCCATCAAGAGGTGGCATCTAATTCGGATGGGTGGGAGACTGCGGGTGCACGCCATCGTAAACCCCCCAACAAGTACCACAGGGTTCCAAATGAGCAATCACAGAGCTATAGAAGGCATCCTAGCGAACAGGTGTATGCAGATGAAATGGGTGAT
AATATTGACATAGAACCAACACAAAAGGAGCTCTCTGACCTGTCAAAAGCATGTAATAAGCTCTGGGAACTTGACCTTAATCGCCTAGTGCCTGGCCAAGACTATGAAATTGATTGTGGAG
>TRINITY_DN75897_c0_g1_i1 from sample A2 / Example unspliced isoform:GTGGTCCTTTTACGGGGACAATTACCCTTGCAGTGTTGACAATATTTACATGTTCTATCCTATCCAATCCAATCCAATCCAATGCGGGAGAGTGTTTTGGACCCCTCCTACCAAAGCCTTTGAAGGCGGGATCTCAATCTCCAGGCCCTCTGTAAACTCTGTATACATTGCGATTTCACAATGGCCGACGAAGATGATCT
CATTCGGCGATTCACTCGCACAGATTTGAACGACAATACTCCTCCCCACATTGACAGATCCACCTGGGCCGAGGTCGTAAGTGGGCGTAACGAAGAGGAAAATTATGAAGAGAAGGGTAGTAGGATCGGTACCTATAATAGGCGTAACGAAGAGGGAAATTATGAAGAGAAGGGTAGCAGGATCGGTACGTATAATGTTG
GGGGATTGCAGAAGAAGAATCGACATGATTGGCAGGAAGAAAAGCGCCATCAAGAGgtcttaaaaatcctatgtttttgcccccacaaattgttttgctgaattgatgtaatgctcagatttgtatttgtttgtaacagGTGGCATCTAATTCGGATGGGTGGGAGACTGCGGGTGCACGCCATCGTAAACCCCCCAACA
AGTACCACAGGGTTCCAAATGAGCAATCACAGAGCTATAGAAGGCATCCTAGCGAACAGGTGTATGCAGATGAAATGGGTGATAATATTGACATAGAACCAACACAAAAGGAGCTCTCTGACCTGTCAAAAGCATGTAATAAGCTCTGGGAACTTGACCTTAATCGCCTAGTGCCTGGCCAAGACTATGAAATTGATTGT
GGAG
Intron 2 GTACGTATAA ... CCATCAAGAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 71.43 | 3 | 7 | 8 |
| A2 | 71.43 | 4 | 9 | 11 |
| A3 | 66.67 | 9 | 19 | 17 |
| A4 | 100 | 0 | 4 | 3 |
| A5 | 100 | 0 | 7 | 6 |
| A6 | 78.57 | 6 | 14 | 30 |
| A7 | 62.26 | 10 | 13 | 20 |
| A8 | 61.29 | 6 | 10 | 9 |
| A9 | 76.05 | 10 | 31.5 | 32 |
| A10 | 57.58 | 14 | 11 | 27 |
>TRINITY_DN42638_c0_g1_i1 from sample A10 / Example spliced isoformCAACTCATACCAGACTATTCCGACAACCAACAGAGTGGTCCTTTTACGGGGACAATTACCCTTGCAGTGTTGACAATATTTACATGTTCTATCCTATCCAATCCAATCCAATGCGGGAGAGTGTTTTGGATCCCTCCTACCAAAGCCTTTGAAGGCCGGATCTCAATCTCCAGGCCCTCTGTAAACTCTGTATACATTGC
GATTTCACAATGGCCGACGAAGATGATCTCATTCGGCGATTCACTCGCACAGATTTGAACGACAATACTCCTCCCCACATTGACAGATCCACCTGGGCCGAGGTCGTAAGTGGGCGTAACGAAGAGGAAAATTATGAAGAGAAGGGTAGTAGGATCGGTACCTATAATAGGCGTAACGAAGAGGGAAATTATGAAGAGAA
GGGTAGCAGGATCGGTGGCATCTAATTCGGATGGGTGGGAGACTGCGGGTGCACGCCATCGTAAACCCCCCAACAAGTACCACAGGGTTCCAAATGAGCAATCACAGAGCTATAGAAGGCATCCTAGCGAACAGGTGTATGCAGATGAAATGGGTGATAATATTGACATAGAACCGACACAAAAGGAGCTCTCTGACCTG
TCAAAAGCATGTAATAAGCTCTGGGAACTTGACCTTAATCGCCTAGTGCCTGGCCAAGACTATGAAATTGATTGTGGAGAAGGGAAAAAGCCATGGCAGGAGGGTGATATGGCACAAAATTCCCTTTTCTGCTGGGTGAGTGAAGATGTGTTCAGAAGACCAACATATGCTCGGTTCTGTGATCTCTTGGATAACTATAA
CCCAAATCAAAGGTCTAGTGAGGTAGTAACCTCAGATGAAAAACATGAAGAAACAGCATTTGTTGAGGAAATCAGTAGAACTGCCCCAATTAAATATCTTCATAAATACCTCGTTGCCAAGGGGCTTGTCTCTTATCATTATGAGGGATTCAAGAGGAAAATGAAATCCCTCTGGTTTGATCTCTTTAACAGGTCTGGCA
CTCGCGATAGCTCCTCAGCATTTGAACATGTATTTGTTGGAGAAGTTAAGCAGCGACAAACAGAGGAAGTTTCTGGCTTTCACAATTGGATTGCGTTTTATCTTGAAGAAGCAAAGGGCAGGATTGATTATCAAGGTTACATTTTTCCAAGGAGGCGTGGACAAATTCCAGCTTCTGAAACACAGTTGCTTACAATTCAG
TTCACATGGAATGGTGTTCTAAAGTCACTTTCTTCCACTCTTATTGGGGTAAGCCCAGAGTTTGAGATAGCTCTGTACACACTTTGTTTTTATGGGGGAGAGCAGGACAATCACATTGAATTGGGTCCATACAATGTGAACATGAAATGTTATATTCTTGAAGGCGATAAGATCGGATCAGCATTTCCTATAGCTGAAAA
TTAGATTCAGCCAAATCCCAAAGTTGTTTTGATGGCAGCTCTGAAGCCTACACATCTATGATGTTTAGTATGTTTCGAATTTTAAAAAAGGTAAGTCAATGTGTCATTGCTAATATGACATACTACAGTTGTTATTCTTTAGAGTATATGATTGAGGAACAGTGTTTAATGCCATTCTATACTATTTTGTGGATGGTTTA
GCATCCTTAATAATAATTTATAGAGATTGTAATTTATTGAAGCCACCATTATAAGCTGTAACAACTATAGTGAAAAATGCTGGATAATATGTAATGTTTTTGATGTAAATTTTAAATATTATGCAAGCG
>TRINITY_DN42638_c0_g1_i4 from sample A10 / Example unspliced isoform:CAACTCATACCAGACTATTCCGACAACCAACAGAGTGGTCCTTTTACGGGGACAATTACCCTTGCAGTGTTGACAATATTTACATGTTCTATCCTATCCAATCCAATCCAATGCGGGAGAGTGTTTTGGATCCCTCCTACCAAAGCCTTTGAAGGCCGGATCTCAATCTCCAGGCCCTCTGTAAACTCTGTATACATTGC
GATTTCACAATGGCCGACGAAGATGATCTCATTCGGCGATTCACTCGCACAGATTTGAACGACAATACTCCTCCCCACATTGACAGATCCACCTGGGCCGAGGTCGTAAGTGGGCGTAACGAAGAGGAAAATTATGAAGAGAAGGGTAGTAGGATCGGTACCTATAATAGGCGTAACGAAGAGGGAAATTATGAAGAGAA
GGGTAGCAGGATCGgtacgtataatgttgggggattgcagaagaagaatcgacatgattggcaggaagaaaagcgccatcaagagGTGGCATCTAATTCGGATGGGTGGGAGACTGCGGGTGCACGCCATCGTAAACCCCCCAACAAGTACCACAGGGTTCCAAATGAGCAATCACAGAGCTATAGAAGGCATCCTAGCG
AACAGGTGTATGCAGATGAAATGGGTGATAATATTGACATAGAACCGACACAAAAGGAGCTCTCTGACCTGTCAAAAGCATGTAATAAGCTCTGGGAACTTGACCTTAATCGCCTAGTGCCTGGCCAAGACTATGAAATTGATTGTGGAGAAGGGAAAAAGCCATGGCAGGAGGGTGATATGGCACAAAATTCCCTTTTC
TGCTGGGTGAGTGAAGATGTGTTCAGAAGACCAACATATGCTCGGTTCTGTGATCTCTTGGATAACTATAACCCAAATCAAAGGTCTAGTGAGGTAGTAACCTCAGATGAAAAACATGAAGAAACAGCATTTGTTGAGGAAATCAGTAGAACTGCCCCAATTAAATATCTTCATAAATACCTCGTTGCCAAGGGGCTTGT
CTCTTATCATTATGAGGGATTCAAGAGGAAAATGAAATCCCTCTGGTTTGATCTCTTTAACAGGTCTGGCACTCGCGATAGCTCCTCAGCATTTGAACATGTATTTGTTGGAGAAGTTAAGCAGCGACAAACAGAGGAAGTTTCTGGCTTTCACAATTGGATTGCGGTACCAAGAATTTCTAAAGCATTTTTATTTTATT
TTTATAAATGATCAATCTCAATCTGAAGCAACTTATGTCTGAAAAAACTAAA