sp|Q9SMH4|RAA2_CHLRE ----> Trans-splicing factor Raa2, chloroplastic
Intron 1 GTAAGATGTT ... TTTATTACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 90.83 | 2 | 16.6 | 23 |
| A2 | 66.67 | 6 | 9 | 15 |
| A3 | 74.91 | 5.2 | 8 | 19 |
| A4 | 91.3 | 1 | 10 | 11 |
| A5 | 92.94 | 0.6 | 7 | 8 |
| A6 | 71.43 | 2 | 4 | 6 |
| A7 | 51.6 | 12.2 | 12 | 14 |
| A8 | 41.4 | 20.2 | 16.4 | 12 |
| A9 | 60.36 | 5.6 | 7 | 10 |
| A10 | 44 | 5.2 | 4 | 4 |
>TRINITY_DN46207_c2_g1_i12 from sample A8 / Example spliced isoformGTTGCAAACCAAAAGAGAAGAATTAATGGACATGGAGTGTGCCTTGTTTGTACAATTAGTCATTCGAGTCAATTCCAGGTTCACATGCATTTCGGCTTAAACAAGGTGACATGGAGTTGATCATTCAAGATATAGTGCCTTTGCTGCTATGGGATTCAAAGGGACTGGGGAGGGCTATTTATGATCGCCGTAGATTCGAT
CTGTTCCTTCATTGTGGTGGTCCGATTGTTCCAGTTCTTAATAAAAAGAAAGAAGTTAAAAGTCATTTAAAAGATTGCGCGGCTAGCAGGAAGAGTAAAATCGAATGATGGAATCAAACACTGGATCATCTTCAACAGTACTTCATCAATCATTGCCTGG
>TRINITY_DN46207_c2_g1_i16 from sample A8 / Example unspliced isoform:ATGTGTTCCATCATAAAATTATAGTCAAATCCTTTAAACTTTTATTTCTTTTCCGGATTTAAATAATTTTACTAGATAAATTCATCCATTAACATTTGAGTTTTGGTTTTTAATTTTTTATATTAATATTTTATCACAGTGAGAAAGAAAGAACGAAATTCTGAAACCATAGTTCCATTAACTGTGTTGTTCGTGGCTTC
CTGTAAGCAATAATGGTCGAATAGAAAATGATGGAATTAAACACCCCATCATCAACAGTTAGAATAATCTACCCATAATTTAATGCAATAATAAGAAAAGTTTTTTTTTGCATTATCTTTCACGTAAGGATAAGCATTTGGGATTTTCTGTTTTTGGTTTGACATTAGTATCGACGTGGGTGCTAACAATGGATTAACAC
AATTGCAAACCTCACATATAGTGCCTTTGCTGCTATGGGATTCAAAGGGACTGGGGAGGGCTATTTATGATCGCCGTAGATTCGATCTGTTCCTTCATTGTGGTGGTCCGATTGTTCCAGTTCTTAATAgtaagatgttttaaaaaaaaatatgatttaaatatttttattgaattcatttttattgatagattaattta
tatgtgaacattaaaatttgttttcgatattaacattttattacagAAAAGAAAGAAGTTAAAAGTCATTTAAAAGATTGCGCGGCTAGCAGGAAGAGTAAAATCGAATGATGGAATCAAACACTGGATCATCTTCAACAGGTACGTTGTTTGTTTTATTTTAGCTTTAG
Intron 2 GTAAGCATTG ... GTCTTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 16.67 | 25 | 6 | 4 |
| A2 | 26.09 | 34 | 13 | 11 |
| A3 | 14.29 | 6 | 0 | 2 |
| A4 | 20 | 6 | 1 | 2 |
| A5 | 0 | 15 | 0 | 0 |
| A6 | 3.03 | 16 | 0 | 1 |
| A7 | 6.67 | 28 | 2 | 2 |
| A8 | 6.25 | 30 | 0 | 4 |
| A9 | 0 | 20 | 0 | 0 |
| A10 | 4.76 | 30 | 0 | 3 |
>TRINITY_DN119991_c1_g1_i1 from sample A1 / Example spliced isoformCTTGTCTGATAGTGTTTGAGGCCTAAAACATACTCTTACAATCTTTATTACTTTGACTTTCAAGTAGTTGACATTGCTCCTATGTTCTATGCCATTGGTAGGTGGGTGGAGAGAAGATGTATGATAAAGCGAGGAGAGGAGAAACAATAGATCTTCCGCCACGAAGAGTTTTGATTTATGAATTTGATGTTCAAAGAAGT
CTAGACGATCGACAAAATTTAATTTTCAAAGTCACTTGCTCAAAGGGGACATATGTGCGATCACTTTGTGCTGATTTTGGAAGGGCACTTGGCAGTTGTGCTCACCTTACGTCTTTACGACGAGATCAAATAGGTGACTACTCAGTTGCTGATGCGTGGAAGTTTTCAGAACTGGAAAATGAAATTGCCAAGCATTATAT
TTAAGAGGGGCTGATGCAGGTGTTCAAGTGATGACTAAGGCAAAATATGGGCAACCCCAACATAACATATGATGATTTAATCTACTTGCTATTTATAGTAAATAACTTACCTAGAAAGGATAAGAGCCCCAAAATGAACAAAGACTCGTTTCAAGGATGCGAACCTTGTATTATTTACATCTTGAAATTCATCATATTTT
GTAAATGTCGATATGTAACGTAAAAGTCGTGTTTTTCTCAACAGGCCAGAGCCCATACTTGTCATAAAGGGGTTAAAGTGAACTTTAACTTTGTGACAGCCTAGTCACTTAAGATGTAGACCAACTTGTCATCCCCACAACGCCACCAACTTTGTGTGGCTAAAGGCAAGTCGATCTAATTTTATTACAAGAGGTGCTAT
TCAATAAAGTGCACAAAAAGGAACACCCTAAAAGGCTAAACACCTATTGTAAATTACTTTTTCAAGTCATTAGTTAAAGAAAGCAGTTGACACCCCCCTCCAGCAATAAAAGGGGGACAAGGAAAGCGGCGAAAGGGAAAGAGATTTGTGTCAGCGGATTGTAATCACATAGGGA
>TRINITY_DN119991_c1_g1_i12 from sample A1 / Example unspliced isoform:CTTGTCTGATAGTGTTTGAGGCCTAAAACATACTCTTACAATCTTTATTACTTTGACTTTCAAGTAGTTGACATTGCTCCTATGTTCTATGCCATTGGTAGGTGGGTGGAGAGAAGATGTATGATAAAGCGAGGAGAGGAGAAACAATAGATCTTCCGCCACGAAGAGTTTTGATTTATGAATTTGATGTTCAAAGAAGT
CTAGACGATCGgtaagcattgatactttggtgttgtttctgagcttatttccctcaatgcatgcaggcaatactgttctcaagttgcactaagtgaatcaacaattgaaggatggaagaaatactttcctagcaaaactaagtatgctgggatagaattgtctagaataatctttttaccttctaaattgttctttggtt
gagcacatagttatatttcattgggattagacccataattagtccattgccattgtctctcttgatattaaaaataatgccaattacattttctgttgtaaatctagaaaaggaagttttgtttcatgaatctttgtagatctttatctctgctgctttccatttgctacaggttgcgagagatttaagtaaaaaattaa
aacgccctttcatattgtctttgcagACAAAATTTAATTTTCAAAGTCACTTGCTCAAAGGGGACATATGTGCGATCACTTTGTGCTGATTTTGGAAGGGCACTTGGCAGTTGTGCTCACCTTACGTCTTTACGACGAGATCAAATAGGT