sp|Q9T070|COX6A_ARATH ----> Cytochrome c oxidase subunit 6a, mitochondrial
Intron 1 GTGCATTGTG ... ATTTTGTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 87.19 | 83.5 | 498 | 25 |
| A2 | 87.06 | 63 | 374 | 21 |
| A3 | 86.7 | 76.5 | 427 | 18 |
| A4 | 87.61 | 40 | 245 | 9 |
| A5 | 88.69 | 29.5 | 202 | 6 |
| A6 | 87.93 | 1003 | 6402 | 192 |
| A7 | 88.13 | 673.5 | 4393 | 148 |
| A8 | 87.6 | 897.5 | 5601 | 225 |
| A9 | 87.11 | 831 | 4867 | 153 |
| A10 | 86.53 | 510.5 | 2812 | 61 |
>TRINITY_DN42207_c2_g2_i3 from sample A6 / Example spliced isoformGGCAATTAAACTAAATTGAGTAATGTTTCATATATATATATATATCAAAAAACACTCATAGTATCTCTATTACAGTTTGAAGTTGAATAGCGTTTGTGTCGAAGAAGGGACGGAGCGTTTGCAATGGCGCAGGCCACGAGATCTCGTTTGTTTCCGGCTGTTCTCAGGACAAGGTTCGCACCTTCCGTTAATGTCAGATC
TGCCTCGTCCAAGCGTTCTTTTTCTTCAGCGGGGCATGATGATGCCTATGAAACTGAAAAGTGGAAAAAGATTACCATTGCAGGAATAATTACATGCACTGCTCTTGGTACCTATTGTCTATCTGGTGAACACGAGCATTTTGAGGATCCCCCGGCTTATCCATACATGCATATTCGAAACAAGGAATTTCCATGGGGTC
CTGATGGGCTGTTTGAAACTAAGAAACATCACTCTGAACACTAAGTGCGGATATCATTTTTATGGACAACCAGAGATTTTGAGGTTTTACTTGGATGCTCGGCATCTGCAAAGCTGAAATTGTGCGTTCCCATAGTATGAAACACCAGAGGCATGTGCACCATCAGTAGTTATATACATTTTGTGATAATCTTTGAGCTT
TTATTATTTGGTTATATATACAATAAGAGGATGTCTTGCACAAAAAATGCGTCGTATCTTTGAAGCTGATGGTATTTCATATTTGCATTTTTATTTCTTTCCTTCACGTGATTTTATGCAACACATCGTGTTTGTGACAATAAGATTAGTTGGCACAAGGGTTTCATAATCTACATCTAGCCG
>TRINITY_DN42207_c2_g2_i1 from sample A6 / Example unspliced isoform:GGCAATTAAACTAAATTGAGTAATGTTTCATATATATATATATATCAAAAAACACTCATAGTATCTCTATTACAGTTTGAAGTTGAATAGCGTTTGTGTCGAAGAAGGGACGGAGCGTTTGCAATGGCGCAGGCCACGAGATCTCGTTTGTTTCCGGCTGTTCTCAGGACAAGGTTCGCACCTTCCGTTAATGTCAGATC
TGCCTCGTCCAAGCGTTCTTTTTCTTCAGCGGGGCATGATGATGCCTATGAAACTGAAAAGTGGAAAAAGATTACCATTGCAGGAATAATTACATGCACTGCTCTTGGTACCTATTGTCTATCTGGTGAACACGAGCATTTTGAGGATCCCCCGGCTTATCCATACATGCATATTCGAAACAAGGAATTTCCATGGGGTC
CTGATGGGCTGTTTGAAACTAAGAAACATCACTCTGAACACTAAGTGCGGATATCATTTTTATGGACAACCAGAGgtgcattgtggatgaatgacatatttgatatttgaacattttacaaaagtttttcaaaagcagtgtctctttaggtgtacatggagtttaaataaatattttataaatacctgactccagctttg
gccgagatacattcacacttattttggctttctctaaagagcttaaaggacaactgtagttgtggtatttcaagtgccagtgctagactaccttttgaaaatgtgaagcatgattctttctcttacgtgttttgtctactctcatttttcttcaatgaaattggattttgtcagATTTTGAGGTTTTACTTGGATGCTCG
GCATCTGCAAAGCTGAAATTGTGCGTTCCCATAGTATGAAACACCAGAGGCATGTGCACCATCAGTAGTTATATACATTTTGTGATAATCTTTGAGCTTTTATTATTTGGTTATATATACAATAAGAGGATGTCTTGCACAAAAAATGCGTCGTATCTTTGAAGCTGATGGTATTTCATATTTGCATTTTTATTTCTTTC
CTTCACGTGATTTTATGCAACACATCGTGTTTGTGACAATAAGATTAGTTGGCACAAGGGTTTCATAATCTACATCTAGCCG
Intron 2 GTGCATTGTG ... ATTTTGTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 75.57 | 161 | 498 | 25 |
| A2 | 75.71 | 120 | 374 | 21 |
| A3 | 73.74 | 151 | 424 | 18 |
| A4 | 75.62 | 79 | 245 | 9 |
| A5 | 77.39 | 59 | 202 | 6 |
| A6 | 76.5 | 1962 | 6388 | 192 |
| A7 | 76.87 | 1318 | 4381 | 147 |
| A8 | 76.45 | 1723 | 5592 | 222 |
| A9 | 74.93 | 1624 | 4853 | 152 |
| A10 | 73.63 | 1003 | 2801 | 61 |
>TRINITY_DN42207_c2_g2_i3 from sample A6 / Example spliced isoformGGCAATTAAACTAAATTGAGTAATGTTTCATATATATATATATATCAAAAAACACTCATAGTATCTCTATTACAGTTTGAAGTTGAATAGCGTTTGTGTCGAAGAAGGGACGGAGCGTTTGCAATGGCGCAGGCCACGAGATCTCGTTTGTTTCCGGCTGTTCTCAGGACAAGGTTCGCACCTTCCGTTAATGTCAGATC
TGCCTCGTCCAAGCGTTCTTTTTCTTCAGCGGGGCATGATGATGCCTATGAAACTGAAAAGTGGAAAAAGATTACCATTGCAGGAATAATTACATGCACTGCTCTTGGTACCTATTGTCTATCTGGTGAACACGAGCATTTTGAGGATCCCCCGGCTTATCCATACATGCATATTCGAAACAAGGAATTTCCATGGGGTC
CTGATGGGCTGTTTGAAACTAAGAAACATCACTCTGAACACTAAGTGCGGATATCATTTTTATGGACAACCAGAGATTTTGAGGTTTTACTTGGATGCTCGGCATCTGCAAAGCTGAAATTGTGCGTTCCCATAGTATGAAACACCAGAGGCATGTGCACCATCAGTAGTTATATACATTTTGTGATAATCTTTGAGCTT
TTATTATTTGGTTATATATACAATAAGAGGATGTCTTGCACAAAAAATGCGTCGTATCTTTGAAGCTGATGGTATTTCATATTTGCATTTTTATTTCTTTCCTTCACGTGATTTTATGCAACACATCGTGTTTGTGACAATAAGATTAGTTGGCACAAGGGTTTCATAATCTACATCTAGCCG
>TRINITY_DN42207_c2_g2_i2 from sample A6 / Example unspliced isoform:CGAGCATTTTGAGGATCCCCCGGAACATTTTGGTGTCTACTTTGTACAGTTCATATGAAAGAAAAATGAAATTCAAACTGGAGTCATTGTATCTGCAAATTAACTCTACTGCTAGTGCTTATCCATACATGCATATTCGAAACAAGGAATTTCCATGGGGTCCTGATGGGCTGTTTGAAACTAAGAAACATCACTCTGAA
CACTAAGTGCGGATATCATTTTTATGGACAACCAGAGgtgcattgtggatgaatgacatatttgatattgaacattttacaaaagtttttcaaaagtagtgtactctttaggtgtacatggagtttaaataaatattttataaatacctgactccagctttggccgagatacattcacacttattttggctttctctaaa
gagcttaaaggacaactgtagttgtggtatttcaagtgccagtgctagactaccttttgaaaatgtgaagcatgattctttctcttacgtgttttgtctactctcatttttcttcaatgaaattggattttgtcagATTTTGAGGTTTTACTTGGATGCTCGGCATCTGCAAAGCTGAAATTGTGCGTTCCCATAGTATG
AAACACCAGAGGCATGTGCACCATCAGTAGTTATATACATTTTGTGATAATCTTTGAGCTTTTATTATTTGGTTATATATACAATAAGAGGATGTCTTGCACAAAAAATGCGTCGTATCTTTGAAGCTGATGGTATTTCATATTTGCATTTTTATTTCTTTCCTTCACGTGATTTTATGCAACACATCGTGTTTGTGACA
ATAAGATTAGTTGGCACAAGGGTTTCATAATCTACATCTAGCCG