NA ----> NA
Intron 1 GTAATTAAAT ... TCTGTCAAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 69.23 | 2 | 3 | 6 |
| A2 | 44 | 7 | 9 | 2 |
| A3 | 11.11 | 4 | 0 | 1 |
| A4 | 0 | 5 | 0 | 0 |
| A5 | 100 | 0 | 6 | 4 |
| A6 | 20 | 18 | 1 | 8 |
| A7 | 29.03 | 11 | 3 | 6 |
| A8 | 33.33 | 2 | 0 | 2 |
| A9 | 18.75 | 13 | 4 | 2 |
| A10 | 26.92 | 19 | 7 | 7 |
>TRINITY_DN104278_c0_g1_i3 from sample A2 / Example spliced isoformCAACAACAAACACTTGGTTTGAATCCAGACAGAGCAAAAATGAAGACTGGAATTCCAGACGTCTCAGCAACAAACACTTGGTTTGAATCCATGCAATCCATTCGGGATATGTGTACAATCGTAAGGCAGTATATTCAATATTGATCATGCAAATGCCAATCACAGCAATCCTCGCTCCCAAATTCTCTCCGCAGGCCCCC
TCTGGACCAACCCACACTGCGAGTTTTGTTGGATGCCAAAAAACTAGAACTGGGTTCTCTCCGCTTTGTGCATTAACTGGCAGTCTCGTCCCCAAGACCTTGAAATCAAACATCCCAGATAAGCGAAGATCGAATCCCGGGCCCAACAAAGTAATAAAAGCCATGTCGAACCCTGGGGTGTTGGAGGAAACAGTAGGCGA
AGAGTCTGTGCAGCAGCTCACTCCACATGATCAGTGGGAATGGAACTCCCAACACCATTGGAAGCACTGGCACGGGCTGTGGACCATGTGGAAACCGACTGATGGCCCTGATATTGTAAAAACCTACAAGTCTGTGAGATCCCTGTGGCCGGTGGACGAAGGGCGCGTCCATCTATATCACAGGAATCAGTGGTATGAAA
CCAGTGGGGAAGGACCCGATATCAATTGGGAGAGCGGACCATGGGCCATGTATGAACTCAAGCACAGCCTGCAGGACGGTATTTGGCATCCTAATTCTCTTGACCATAGGATTATTCAGTTCCCCAATGGGGATCTCGGGTGGGTGCAGCTGACATTGAAGCCCGATGACCTCAAGTCTGTTGTCTTCAACGAGCTCCAT
TTCATGCCATCTCCTGATGCAAGGGTCCCTGTTATAATTGGCTATGACTTTGAGGGCAAGATGGGGGTTGCTCTAATGCTTGAAGAGACAAGGGACAATGAGAAGAGGCCAGAACCTTCATGGCAAGGTACTATTTGGAAGCACCACAGAGCTACTCTTGAAGAAAGCAGGAATGAGCCTGTGGGGACCTTTACTGGGAT
GGAAACGAGCATCAATACAAATCTCCAAATGTCAGTCAGAAAGGCAGTTTGGAAAGGTTTCAAAGGTGGGTTGAGTGAGGAGGAGGCTGAAGGTTATATTTTGATCCACCTTCCTTATGGATTCACAGCTTTTGCTCCCCGAGTGGCCGCAATTGGTAAGGCTCATGCATACTATGTGAGCTGGGTTGTGAATGAAAACC
AAGTGAGAGTGCTTTCTGTTAGTTACTTTGCAGATGGCAGGCTACAGCATCTGAAGTCAGGGACATACGAGAAATCTACATAAGACAGGCTACACAGCTGCTCGGCCATAATGTGAAACTCATGTTTGTTAGCTCTTCACTGTCTTCAAGTGTTGATAATAGACCGAGTTTTCTTCTTAAATGTCATGAACTTGTGAAGT
GATTTAATAGCAAAAAATTGATCATTCTGGTGAGGACTATTCAACTGCATAAGAACTTCTGCCAATTATTATTTTTCTAAGCTGCAAAATCTCAGGGATCAAACATAACTCCATACATATTAGGCACTGATGTTATCACCATGG
>TRINITY_DN104278_c0_g1_i4 from sample A2 / Example unspliced isoform:CAACAACAAACACTTGGTTTGAATCCAGACAGAGCAAAAATGAAGACTGGAATTCCAGACGTCTCAGCAACAAACACTTGGTTTGAATCCATGCAATCCATTCGGGATATGTGTACAATCGTAAGGCAGTATATTCAATATTGATCATGCAAATGCCAATCACAGCAATCCTCGCTCCCAAATTCTCTCCGCAGGCCCCC
TCTGGACCAACCCACACTGCGAGTTTTGTTGGATGCCAAAAAACTAGAACTGGGTTCTCTCCGCTTTGTGCATTAACTGGCAGTCTCGTCCCCAAGgtaattaaattatttcatcaatttcattgactgacaagcataaaaccaggaattcttcatgatatatatttcattttctgtcaaagACCTTGAAATCAAACATC
CCAGATAAGCGAAGATCGAATCCCGGGCCCAACAAAGTAATAAAAGCCATGTCGAACCCTGGGGTGTTGGAGGAAACAGTAGGCGAAGAGTCTGTGCAGCAGCTCACTCCACATGATCAGTGGGAATGGAACTCCCAACACCATTGGAAGCACTGGCACGGGCTGTGGACCATGTGGAAACCGACTGATGGCCCTGATAT
TGTAAAAACCTACAAGTCTGTGAGATCCCTGTGGCCGGTGGACGAAGGGCGCGTCCATCTATATCACAGGAATCAGTGGTATGAAACCAGTGGGGAAGGACCCGATATCAATTGGGAGAGCGGACCATGGGCCATGTATGAACTCAAGCACAGCCTGCAGGACGGTATTTGGCATCCTAATTCTCTTGACCATAGGATTA
TTCAGTTCCCCAATGGGGATCTCGGGTGGGTGCAGCTGACATTGAAGCCCGATGACCTCAAGTCTGTTGTCTTCAACGAGCTCCATTTCATGCCATCTCCTGATGCAAGGGTCCCTGTTATAATTGGCTATGACTTTGAGGGCAAGATGGGGGTTGCTCTAATGCTTGAAGAGACAAGGGACAATGAGAAGAGGCCAGAA
CCTTCATGGCAAGGTACTATTTGGAAGCACCACAGAGCTACTCTTGAAGAAAGCAGGAATGAGCCTGTGGGGACCTTTACTGGGATGGAAACGAGCATCAATACAAATCTCCAAATGTCAGTCAGAAAGGCAGTTTGGAAAGGTTTCAAAGGTGGGTTGAGTGAGGAGGAGGCTGAAGGTTATATTTTGATCCACCTTCC
TTATGGATTCACAGCTTTTGCTCCCCGAGTGGCCGCAATTGGTAAGGCTCATGCATACTATGTGAGCTGGGTTGTGAATGAAAACCAAGTGAGAGTGCTTTCTGTTAGTTACTTTGCAGATGGCAGGCTACAGCATCTGAAGTCAGGGACATACGAGAAATCTACATAAGACAGGCTACACAGCTGCTCGGCCATAATGT
GAAACTCATGTTTGTTAGCTCTTCACTGTCTTCAAGTGTTGATAATAGACCGAGTTTTCTTCTTAAATGTCATGAACTTGTGAAGTGATTTAATAGCAAAAAATTGATCATTCTGGTGAGGACTATTCAACTGCATAAGAACTTCTGCCAATTATTATTTTTCTAAGCTGCAAAATCTCAGGGATCAAACATAACTCCAT
ACATATTAGGCACTGATGTTATCACCATGG