NA ----> NA
Intron 1 GTACAGCAAT ... CTTACTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 23.08 | 5 | 1 | 2 |
| A2 | 80 | 1 | 4 | 4 |
| A3 | -1 | 0 | 0 | 0 |
| A4 | 52.94 | 4 | 6 | 3 |
| A5 | -1 | 0 | 0 | 0 |
| A6 | 25.58 | 16 | 5 | 6 |
| A7 | 27.71 | 30 | 17 | 6 |
| A8 | 26.98 | 46 | 13 | 21 |
| A9 | 21.52 | 31 | 6 | 11 |
| A10 | 21.43 | 33 | 12 | 6 |
>TRINITY_DN27134_c0_g1_i1 from sample A6 / Example spliced isoformCCATAGTAGTCTTATTCGAGCCATTAGCCTTCCACTCTGCGTAACAAAAGCTCTGCGACTCAGGTTCTGCTCGTGGGGTTTGCCCATATCAGAGTTTTATAATGACAAAAATATAGAACCGGTTAAGCCCAGAATACTTTAATGTCGACGGAGGCTCAGGTTCAGGGTAAAGGCGAAACCGGCTGATTCCAATCCGAAGA
AAGGAGGTAAGCAGCATGACCTGCTGCGTTAGAACTCTCTCTCTGGTTTCGTCTGGGTACAACTTCATAGAAAAAAATTAGGGCTTTTCTTTGCTTCTGCATTAATCTATAAGGGAAGACAAAAAGAATAGTTTAAAGATTGACCCAGAAATAAACCCTACAGTTTAATGTCTTTTTAAGAGCTTATTGGTTCAAAAGAG
GTCATTAGTAAGCCGACCAACAACTATTATCTGTCGAGGTTTAATACCGACGCTTCAAGAGGGTTTTTATGGAGATGTATCCTTTACGAAAATGGAAGAAAGAGATTCGGTCTCATTTTTTTAAATCTTTATGTATCCAAACTGAGCGTGGGACTTCCTCGGCTCTATATATTTTAGTTTGGAGAAGCCCGGAAGAAGGG
TTTTCTTTTTGAGATTTAAACAAGGAGTTCGGGGTGACTTAAGAATTTTTGCTCTTTAATAAACATTCAATAGAACTCTGAAATCTTGAAGAAAAT
>TRINITY_DN27134_c0_g1_i3 from sample A6 / Example unspliced isoform:CCATAGTAGTCTTATTCGAGCCATTAGCCTTCCACTCTGCGTAACAAAAGCTCTGCGACTCAGGTTCTGCTCGTGGGGTTTGCCCATATCAGAGTTTTATAATGACAAAAATATAGAACCGGTTAAGCCCAGAATACTTTAATGTCGACGGAGGCTCAGgtacagcaataccatacttcccttatctagtatttgcaaaa
catgaaatatttattttctgtgtttaagtattctactcagacttactgcagGTTCAGGGTAAAGGCGAAACCGGCTGATTCCAATCCGAAGAAAGGAGGTAAGCAGCATGACCTGCTGCGTTAGAACTCTCTCTCTGGTTTCGTCTGGGTACAACTTCATAGAAAAAAATTAGGGCTTTTCTTTGCTTCTGCATTAATCT
ATAAGGGAAGACAAAAAGAATAGTTTAAAGATTGACCCAGAAATAAACCCTACAGTTTAATGTCTTTTTAAGAGCTTATTGGTTCAAAAGAGGTCATTAGTAAGCCGACCAACAACTATTATCTGTCGAGGTTTAATACCGACGCTTCAAGAGGGTTTTTATGGAGATGTATCCTTTACGAAAATGGAAGAAAGAGATTC
GGTCTCATTTTTTTAAATCTTTATGTATCCAAACTGAGCGTGGGACTTCCTCGGCTCTATATATTTTAGTTTGGAGAAGCCCGGAAGAAGGGTTTTCTTTTTGAGATTTAAACAAGGAGTTCGGGGTGACTTAAGAATTTTTGCTCTTTAATAAACATTCAATAGAACTCTGAAATCTTGAAGAAAAT
Intron 2 GTACAGCAAT ... TTCTACTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 16.67 | 5 | 1 | 1.6 |
| A2 | 77.33 | 1 | 3.6 | 3.6 |
| A3 | -1 | 0 | 0 | 0 |
| A4 | 58 | 4 | 5.6 | 2.4 |
| A5 | -1 | 0 | 0 | 0 |
| A6 | 26.32 | 14 | 5 | 3.2 |
| A7 | 36.96 | 29 | 17 | 4 |
| A8 | 22.64 | 43 | 12.6 | 14.4 |
| A9 | 16.22 | 31 | 6 | 7.2 |
| A10 | 26.67 | 33 | 12 | 5 |
>TRINITY_DN27134_c0_g1_i2 from sample A6 / Example spliced isoformCCATAGTAGTCTTATTCGAGCCATTAGCCTTCCACTCTGCGTAACAAAAGCTCTGCGACTCAGGTTCTGCTCGTGGGGTTTGCCCATATCAGAGTTTTATAATGACAAAAATATAGAACCGGTTAAGCCCAGAATACTTTAATGTCGACGGAGGCTCAGACTTACTGCAGGTTCAGGGTAAAGGCGAAACCGGCTGATTC
CAATCCGAAGAAAGGAGGTAAGCAGCATGACCTGCTGCGTTAGAACTCTCTCTCTGGTTTCGTCTGGGTACAACTTCATAGAAAAAAATTAGGGCTTTTCTTTGCTTCTGCATTAATCTATAAGGGAAGACAAAAAGAATAGTTTAAAGATTGACCCAGAAATAAACCCTACAGTTTAATGTCTTTTTAAGAGCTTATTG
GTTCAAAAGAGGTCATTAGTAAGCCGACCAACAACTATTATCTGTCGAGGTTTAATACCGACGCTTCAAGAGGGTTTTTATGGAGATGTATCCTTTACGAAAATGGAAGAAAGAGATTCGGTCTCATTTTTTTAAATCTTTATGTATCCAAACTGAGCGTGGGACTTCCTCGGCTCTATATATTTTAGTTTGGAGAAGCC
CGGAAGAAGGGTTTTCTTTTTGAGATTTAAACAAGGAGTTCGGGGTGACTTAAGAATTTTTGCTCTTTAATAAACATTCAATAGAACTCTGAAATCTTGAAGAAAAT
>TRINITY_DN27134_c0_g1_i3 from sample A6 / Example unspliced isoform:CCATAGTAGTCTTATTCGAGCCATTAGCCTTCCACTCTGCGTAACAAAAGCTCTGCGACTCAGGTTCTGCTCGTGGGGTTTGCCCATATCAGAGTTTTATAATGACAAAAATATAGAACCGGTTAAGCCCAGAATACTTTAATGTCGACGGAGGCTCAGgtacagcaataccatacttcccttatctagtatttgcaaaa
catgaaatatttattttctgtgtttaagtattctactcagACTTACTGCAGGTTCAGGGTAAAGGCGAAACCGGCTGATTCCAATCCGAAGAAAGGAGGTAAGCAGCATGACCTGCTGCGTTAGAACTCTCTCTCTGGTTTCGTCTGGGTACAACTTCATAGAAAAAAATTAGGGCTTTTCTTTGCTTCTGCATTAATCT
ATAAGGGAAGACAAAAAGAATAGTTTAAAGATTGACCCAGAAATAAACCCTACAGTTTAATGTCTTTTTAAGAGCTTATTGGTTCAAAAGAGGTCATTAGTAAGCCGACCAACAACTATTATCTGTCGAGGTTTAATACCGACGCTTCAAGAGGGTTTTTATGGAGATGTATCCTTTACGAAAATGGAAGAAAGAGATTC
GGTCTCATTTTTTTAAATCTTTATGTATCCAAACTGAGCGTGGGACTTCCTCGGCTCTATATATTTTAGTTTGGAGAAGCCCGGAAGAAGGGTTTTCTTTTTGAGATTTAAACAAGGAGTTCGGGGTGACTTAAGAATTTTTGCTCTTTAATAAACATTCAATAGAACTCTGAAATCTTGAAGAAAAT