sp|Q9T034|SYFA_ARATH ----> Phenylalanine--tRNA ligase alpha subunit, cytoplasmic
Intron 1 GTTATTCATT ... GCATTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 25.3 | 31 | 13 | 8 |
| A2 | 24.79 | 44 | 18 | 11 |
| A3 | 21.05 | 30 | 12 | 4 |
| A4 | 16.28 | 18 | 4 | 3 |
| A5 | 22.22 | 21 | 8 | 4 |
| A6 | 20.18 | 89 | 30 | 15 |
| A7 | 23.12 | 138 | 54 | 29 |
| A8 | 18.45 | 84 | 27 | 11 |
| A9 | 18.77 | 119 | 38 | 17 |
| A10 | 24.51 | 97 | 52 | 11 |
>TRINITY_DN117655_c0_g1_i1 from sample A1 / Example spliced isoformATTCAAAATCAGATTCAAGGGCTTAACTTAACCGAAGAGCATCGTGTTCAAGCGCTCGGGTGGCGTTCATGTGACCCAGTTACTCATCCCACCAGTGCTGAAAGTCTCGCACGTATAACTTTTTCTCTCGTGGAATATTGCAATCAGCATTCACAGGCGGAGGGGCAGGAGGATTAGCGATTGAAGATTGAGTGAAGGCG
CACAGGGCAAAATATGGCGGAAGAGGCAGTTCTAGGGTTTTTACAGTCCCACGATGAGATTTCCCATTCAGGGGAGTTCGCAGCTTCCAAAGGGATCGACCATTCCGAGCTCTTGAACGTGATTAAGAGTCTCCATGGCTTCAGACTCGTCGACGCCCAGGATATTAAGACTGAGAAGTGGAATCTTACTGAAGAAGGTG
AAGCATATGCCACTTCAGGATCGCCAGAAGTACAATTTTTCTTAGCTATCCCACCGGAAGGGATCTCTCGTGACGAACTACAGAGGAAGGTCGGTGGCTCTGTATATAACATAGGAAGTGCACAAGCAATGAAAAAAAAATGGGTGGAGCTTGGCAAACTATTAGTATGTCGAAAGGTGGAAAAAGTTGAAGACCGAGTC
AAGGAGTTGTTGATTAAAATAAAGGATGGTCAGGAGGTTGATTCAAAGGACATTCTTGATCTGAAGAAACGGAAGCTGATTGCTTTGCAATCATGGAAGGGATACTCTTTAAGAAAAGGTCCCAACTATGCTCCAAAGAGAATAAAGGCAGCAACTGATTTAACTCGCGAGCAATTACAAAGGGGCACTTGGCAGGAGCT
AGAGTTCAAGGAATACAATTTCAATGCACTGGGACAACCCACAGAAGGTGGCCATCTGCATCCTTTGCTGAAGGTACGGGCACAATTTAGAGAAATCTTCCTAGAAATGGGATTCGAAGAGATGCCAACAAATAACTTCGTGGAGAGTAGTTTTTGGAACTTTGATGCTCTTTTCCAACCACAGCAACACCCTGCTCGAG
ATTCACATGATACATTTTTCTTAAAAGTTCCCGCAAATACTCGAACATTACCTGAAGATTATTTACGGAGGGTGCAAGAAGTGCATGAATCTGGTGGCTATGGATCTAGAGGATACGGGTATGACTGGAAAAGGGAGGAAGCTGAAAAGAATTTACTCCGCACCCATACAACAGCTGTTTCGTCTAGAATGCTTTATGCA
CTGGCTCAGAAACCTTTTACCCCCAAAAGATACTTCTCTATTGATCGGGTTTTTCGAAATGAGGCAGTGGATAGGACCCATCTTGCGGAGTTTCACCAAATTGAAGGTGTTGTCTGTGACAGGGGCCTTACATTAGGTGATTTGATAGGCGTTCTGAATGACTTCTTCTCACGTCTAGGTATGATGAAATTACGATTCAA
ACCTGCATACAATCCTTACACAGAGCCCAGTATGGAAATTTTCAGCTACCATGAAGGATTAAAAAAGTGGGTAGAGGTTGGTAATTCTGGCATGTTCCGCCCAGAAATGTTGCTCCCTATGGGGTTACCAGAAGATGTTTCTGTTATTGCGTGGGGTTTGTCGCTAGAGCGACCTACGATGATATTATATGGCATAGATA
ATATACGAGATCTCTTTGGGCACAAGGTGGATCTAAATCTTATCAAGAAAAATCCCATTTGCCGCCTTGGCATGCAATAATACCCTAGGCAATATGATGGGCATTTTTAATTGTAGAAATGATTCATTTTTGTATCGTGAGGTTTGCTGGAATGAATATCAAGAATTGAGCAAAAGTAGCAGAAATGCATTTCAATAATG
AAGCTAACAGCGTTTCTTGGATTTCCTCTCTTTGAGTTAGGTTGCATTTGAGGTTGTCCCTATTTGGGTATGGCAATATTTGATATAACCAGAGAAAATATTGAAATCATTTTGTTTAAAAGTTTTAGTTATATTTCATATCCCAAGTATTTGGAGCAAAATTATATCCAAGGATTTTTTATTGGCC
>TRINITY_DN117655_c0_g1_i6 from sample A1 / Example unspliced isoform:ATTCAAAATCAGATTCAAGGGCTTAACTTAACCGAAGAGCATCGTGTTCAAGCGCTCGGGTGGCGTTCATGTGACCCAGTTACTCATCCCACCAGTGCTGAAAGTCTCGCACGTATAACTTTTTCTCTCGTGGAATATTGCAATCAGCATTCACAGGCGGAGGGGCAGGAGGATTAGCGATTGAAGATTGAGTGAAGGCG
CACAGGGCAAAATATGGCGGAAGAGGCAGTTCTAGGGTTTTTACAGTCCCACGATGAGATTTCCCATTCAGGGGAGTTCGCAGCTTCCAAAGGGATCGACCATTCCGAGCTCTTGAACGTGATTAAGAGTCTCCATGGCTTCAGACTCGTCGACGCCCAGGATATTAAGACTGAGAAGTGGAATCTTACTGAAGAAGGTG
AAGCATATGCCACTTCAGGATCGCCAGAAGTACAATTTTTCTTAGCTATCCCACCGGAAGGGATCTCTCGTGACGAACTACAGAGGAAGGTCGGTGGCTCTGTATATAACATAGGAAGTGCACAAGCAATGAAAAAAAAATGGGTGGAGCTTGGCAAACTATTAGTATGTCGAAAGGTGGAAAAAGTTGAAGACCGAGTC
AAGGAGTTGTTGATTAAAATAAAGGATGGTCAGGAGGTTGATTCAAAGGACATTCTTGATCTGAAGAAACGGAAGCTGATTGCTTTGCAATCATGGAAGGGATACTCTTTAAGAAAAGGTCCCAACTATGCTCCAAAGAGAATAAAGGCAGCAACTGATTTAACTCGCGAGCAATTACAAAGGGGCACTTGGCAGGAGCT
AGAGTTCAAGGAATACAATTTCAATGCACTGGGACAACCCACAGAAGGTGGCCATCTGCATCCTTTGCTGAAGGTACGGGCACAATTTAGAGAAATCTTCCTAGAAATGGGATTCGAAGAGATGCCAACAAATAACTTCGTGGAGAGTAGTTTTTGGAACTTTGATGCTCTTTTCCAACCACAGCAACACCCTGCTCGAG
ATTCACATGATACATTTTTCTTAAAAGgttattcattttagttgtcattaggcgaattcattcaattacctgcttatgcaattttaattcctacatattaatatatgatatattaatatggaaagctctatcaagatagcttttggctaatggatatggaatatattaatatagaaaactgtatcaagatagtttttggc
taatggttgctgagcatttgcagTTCCCGCAAATACTCGAACATTACCTGAAGATTATTTACGGAGGGTGCAAGAAGTGCATGAATCTGGTGGCTATGGATCTAGAGGATACGGGTATGACTGGAAAAGGGAGGAAGCTGAAAAGAATTTACTCCGCACCCATACAACAGCTGTTTCGTCTAGAATGCTTTATGCACTGG
CTCAGAAACCTTTTACCCCCAAAAGATACTTCTCTATTGATCGGGTTTTTCGAAATGAGGCAGTGGATAGGACCCATCTTGCGGAGTTTCACCAAATTGAAGGTGTTGTCTGTGACAGGGGCCTTACATTAGGTGATTTGATAGGCGTTCTGAATGACTTCTTCTCACGTCTAGGTAATATTTAATATCAATCTTCTATT
TTAACTCCTAGGTGGTGTGGTCAATTTTCTATTTTTTTAGTGATATTGGGTTTGGGTTATCTTCCTTTTACCCATGTGCTGAAGGACTTTTGATTCCTTGCTCATGTCTGAATACAAGACATGCAATGTATTGCACTTGCTATTTTGGTTGGTACCTCTGACCCACAGTTTCTTTTAGGTATGATGAAATTACGATTCAA
ACCTGCATACAATCCTTACACAGAGCCCAGTATGGAAATTTTCAGGTATTATCTTATGCATTTTAAAGCTTTGGAATTCACTATCAAGTTTTATAGCATTCCTGTTTGAATGTTTTCTTGTTATTGTGTAGCTACCATGAAGGATTAAAAAAGTGGGTAGAGGTTGGTAATTCTGGCATGTTCCGCCCAGAAATGTTGCT
CCCTATGGGGTTACCAGAAGATGTTTCTGTTATTGCGTGGGGTTTGTCGCTAGAGCGACCTACGATGATATTATATGGCATAGATAATATACGAGATCTCTTTGGGCACAAGGTGGATCTAAATCTTATCAAGAAAAATCCCATTTGCCGCCTTGGCATGCAATAATACCCTAGGCAATATGATGGGCATTTTTAATTGT
AGAAATGATTCATTTTTGTATCGTGAGGTTTGCTGGAATGAATATCAAGAATTGAGCAAAAGTAGCAGAAATGCATTTCAATAATGAAGCTAACAGCGTTTCTTGGATTTCCTCTCTTTGAGTTAGGTTGCATTTGAGGTTGTCCCTATTTGGGTATGGCAATATTTGATATAACCAGAGAAAATATTGAAATCATTTTG
TTTAAAAGTTTTAGTTATATTTCATATCCCAAGTATTTGGAGCAAAATTATATCCAAGGATTTTTTATTGGCC
Intron 2 GTAATGATTG ... TTTTGTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 37.5 | 20 | 0 | 12 |
| A2 | 0 | 13 | 0 | 0 |
| A3 | 20 | 24 | 0 | 6 |
| A4 | 32 | 17 | 0 | 8 |
| A5 | 40 | 3 | 0 | 2 |
| A6 | 25.71 | 182 | 0 | 63 |
| A7 | 27.8 | 161 | 3 | 62 |
| A8 | 30 | 224 | 0 | 96 |
| A9 | 29.31 | 164 | 0 | 68 |
| A10 | 28.05 | 59 | 2 | 23 |
>TRINITY_DN40749_c0_g2_i2 from sample A8 / Example spliced isoformTGATATTGCAACTACAAGAAGGTAGTGGGAACGACTCGCACACCATGTCCATTTCCATCTGACTCAAACTCTGTGGCTGTCAGGTCAATTTAGTATCAAGGGATATTTACTTCCTTGCCACCAATCTGGAGTTATCGGGGCCACCTCCTGCACGAGTTCCTCCACCAAGGATAACCACTTCCTTGTCTTGTGTTTTAGTA
GCTCCATGCCAAGCTTGTACTCCACAATCAGGTTGAAAAAGTTGAAGACTGAGTCAAGGAGTTGTTGATTAAAATAAAGGATGGTCAGGAGGTTGATTCAAAGGACATTCTTGATCTGAAGAAACGGAAGCTGATTGCTTTGCAATCATGGAAGGGCTACTCTTTAAGAAAAGGTCCCAACTATGCTCCAAAGAGAATAA
AGGCAGCAACCGATTTAACTCGCGAGCAATTACAAAGGGGCACTTGGCAGGAGCTAGAGTTCAAGGAATACAATTTCAATGCACTGGGACAACCCACAGAAGGTGGCCATCTGCATCCTTTGCTGAAGGTACGGGCACAATTTAGAGAAATCTTCCTAGAAATGGGATTCGAAGAGATGCCAACAAATAACTTCGTGGAG
AGTAGTTTTTGGAACTTTGATGCTCTTTTCCAACCACAGCAACACCCTGCTCGAGATTCACATGATACATTTTTCTTAAAAGTTCCCGCAAATACTCGAACATTACCTGAAGATTATTTACGGAGGGTGCAAGAAGTGCATGAATCTGGTGGCTATGGATCTAGAGGATACGGGTATGACTGGAAAAGGGAGGAAGCTGA
AAAGAATTTACTCCGCACCCATACAACAGCTGTTTCGTCTAGAATGCTTTATGCACTGGCTCAGAAACCTTTTACCCCCAAAAGATACTTCTCTATTGATCGGGTTTTTCGAAATGAGGCAGTGGATAGGACCCATCTTGCGGAGTTTCACCAAATTGAAGGTGTTGTCTGTGACAGGGGCCTTACATTAGGTGATTTGA
TAGGCGTTCTGAATGACTTCTTCTCACGTCTAGGTATGATGAAATTACGATTCAAACCTGCATACAATCCTTACACAGAGCCCAGTATGGAAATTTTCAGCTACCATGAAGGATTAAAAAAGTGGGTAGAGGTTGGTAATTCTGGCATGTTCCGCCCAGAAATGTTGCTCCCTATGGGGTTACCAGAAGATGTTTCTGTT
ATTGCGTGGGGTTTGTCGCTAGAGCGACCTACGATGATATTATATGGCATAGATAATATACGAGATCTCTTTGGGCACAAGGTGGATCTAAATCTTATCAAGAAAAATCCCATTTGCCGCCTTGGCATGCAATAATACCCTAGGCAATATGATGGGCATTTTTAATTGTAGAAATGATTCATTTTTGTATCGTGAGGTTT
GCTGGAATGAATATCAAGAATTGAGCAAAAGTAGCAGAAATGCATTTCAATAATGAAGCTAACAGCGTTTCTTGAATTTCCTCTCTTTGAGTGAGGTTGCATTTGAGGTTGTCCCTATTTGGGTATGGCAATATTTGATATAACCAGAGAAAATATTGAAATCATTTTGTTTAAAAGTTTTAGTTATATTTCATATCCCA
AGTATTTGGAGCAAAATTATATCCAAGGATTTTTTATTGGCCAAAGCTTACCACATTTTTTATGACGTAGGAAAATATCTACAAGGTTGATGGTTTTGCTTGTTAAATATCCAATGTTAGTGGGCAGAATTTTTATACGAGGAAAGCAACATTAGCGAGTTTATTCCGAAGAATCTAGATATATTCAAGTGTCCTCCAGA
ATCTAGTGCATCTGTAAACTGGTTAATGAAGATAATAAATGACCTTGAAGATCCAAA
>TRINITY_DN40749_c0_g2_i4 from sample A8 / Example unspliced isoform:CGAGATCTCTTTGGGCACAAGgtaatgattgctgtattagtgagtttaatatcttaaatggattctgtcgttgtggttgtatccgctgcttttagctctttgtaaagttagttcttatttgtttaagtattataatatttttggagatgattttattttgtgcagGTGGATCTAAATCTTATCAAGAAAAATCCCATTTG
CCGCCTTGGCATGCAATAATACCCTAGGCAATATGATGGGCATTTTTAATTGTAGAAATGATTCATTTTTGTATCGTGAGGTTTGCTGGAATGAATATCAAGAATTGAGCAAAAGTAGCAGAAATGCATTTCAATAATGAAGCTAACAGCGTTTCTTGAATTTCCTCTCTTTGAGTGAGGTTGCATTTGAGGTTGTCCCT
ATTTGGGTATGGCAATATTTGATATAACCAGAGAAAATATTGAAATCATTTTGTTTAAAAGTTTTAGTTATATTTCATATCCCAAGTATTTGGAGCAAAATTATATCCAAGGATTTTTTATTGGCCAAAGCTTACCACATTTTTTATGACGTAGGAAAATATCTACAAGGTTGATGGTTTTGCTTGTTAAATATCCAATG
TTAGTGGGCAGAATTTTTATACGAGGAAAGCAACATTAGCGAGTTTATTCCGAAGAATCTAGATATATTCAAGTGTCCTCCAGAATCTAGTGCATCTGTAAACTGGTTAATGAAGATAATAAATGACCTTGAAGATCCAAA
Intron 3 GTATTATCTT ... TATTGTGTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 25.42 | 44 | 11 | 15 |
| A2 | 21.74 | 18 | 1 | 5 |
| A3 | 13.95 | 37 | 0 | 6 |
| A4 | 13.79 | 25 | 1 | 4 |
| A5 | 25 | 18 | 1 | 6 |
| A6 | 18.63 | 166 | 0 | 38 |
| A7 | 25.51 | 146 | 2 | 50 |
| A8 | 22.89 | 192 | 2 | 57 |
| A9 | 23.23 | 119 | 0 | 36 |
| A10 | 14.56 | 88 | 0 | 15 |
>TRINITY_DN41670_c0_g1_i2 from sample A7 / Example spliced isoformTTCAAAATCAGATTCAAGGGCTTAACTTAACCGAAGAGCATCGTGTTCAAGCGCTCGGGTGGCGTTCATGTGACCCAGTTACTCATCCCACCAGTGCTGAAAGTCTCGCACGTATAACTTTTTCTCTCGTGGAATATTGCAATCAGCATTCACAGGCGGAGGGGCAGGAGGATTAGCGATTGAAGATTGAGTGAAGGCGC
ACAGGGCAAAATATGGCGGAAGAGGCAGTTCTAGGGTTTTTACAGTCCCACGATGAGATTTCCCATTCAGGGGAGTTCGCAGCTTCCAAAGGGATCGACCATTCCGAGCTCTTGAACGTGATTAAGAGTCTCCATGGCTTCAGACTCGTCGACGCCCAGGATATTAAGACTGAGAAGTGGAATCTTACTGAAGAAGGTGA
AGCATATGCCACTTCAGGATCGCCAGAAGTACAATTTTTCTTAGCTATCCCACCGGAAGGGATCTCTCGTGACGAACTACAGAGGAAGGTCGGTGGCTCTGTATATAACATAGGAAGTGCACAAGCAATGAAAAAAAAATGGGTGGAGCTTGGCAAACTATTAGTATGTCGAAAGGTGGAAAAAGTTGAAGACCGAGTCA
AGGAGTTGTTGATTAAAATAAAGGATGGTCAGGAGGTTGATTCAAAGGACATTCTTGATCTGAAGAAACGGAAGCTGATTGCTTTGCAATCATGGAAGGGCTACTCTTTAAGAAAAGGTCCCAACTATGCTCCAAAGAGAATAAAGGCAGCAACCGATTTAACTCGCGAGCAATTACAAAGGGGCACTTGGCAGGAGCTA
GAGTTCAAGGAATACAATTTCAATGCACTGGGACAACCCACAGAAGGTGGCCATCTGCATCCTTTGCTGAAGGTACGGGCACAATTTAGAGAAATCTTCCTAGAAATGGGATTCGAAGAGATGCCAACAAATAACTTCGTGGAGAGTAGTTTTTGGAACTTTGATGCTCTTTTCCAACCACAGCAACACCCTGCTCGAGA
TTCACATGATACATTTTTCTTAAAAGTTCCCGCAAATACTCGAACATTACCTGAAGATTATTTACGGAGGGTGCAAGAAGTGCATGAATCTGGTGGCTATGGATCTAGAGGATACGGGTATGACTGGAAAAGGGAGGAAGCTGAAAAGAATTTACTCCGCACCCATACAACAGCTGTTTCGTCTAGAATGCTTTATGCAC
TGGCTCAGAAACCTTTTACCCCCAAAAGATACTTCTCTATTGATCGGGTTTTTCGAAATGAGGCAGTGGATAGGACCCATCTTGCGGAGTTTCACCAAATTGAAGGTGTTGTCTGTGACAGGGGCCTTACATTAGGTGATTTGATAGGCGTTCTGAATGACTTCTTCTCACGTCTAGGTATGATGAAATTACGATTCAAA
CCTGCATACAATCCTTACACAGAGCCCAGTATGGAAATTTTCAGCTACCATGAAGGATTAAAAAAGTGGGTAGAGGTTGGTAATTCTGGCATGTTCCGCCCAGAAATGTTGCTCCCTATGGGGTTACCAGAAGATGTTTCTGTTATTGCGTGGGGTTTGTCGCTAGAGCGACCTACGATGATATTATATGGCATAGATAA
TATACGAGATCTCTTTGGGCACAAGGTGGATCTAAATCTTATCAAGAAAAATCCCATTTGCCGCCTTGGCATGCAATAATACCCTAGGCAATATGATGGGCATTTTTAATTGTAGAAATGATTCATTTTTGTATCGTGAGGTTTGCTGGAATGAATATCAAGAATTGAGCAAAAGTAGCAGAAATGCATTTCAATAATGA
AGCTAACAGCGTTTCTTGAATTTCCTCTCTTTGAGTGAGGTTGCATTTGAGGTTGTCCCTATTTGGGTATGGCAATATTTGATATAACCAGAGAAAATATTGAAATCATTTTGTTTAAAAGTTTTAGTTATATTTCATATCCCAAGTATTTGGAGCAAAATTATATCCAAGGATTTTTTATTGGCCAAAGCTTACCACAT
TTTTTATGACGTAGGAAAATATCTACAAGGTTGATGGTTTTGCTTGTTAAATATCCAATGTTAGTGGGCAGAATTTTTATACGAGGAAAGCAACATTAGCGAGTTTATTCCGAAGAATCTAGATATATTCAAGTGTCCTCCAGAATCTAGTGCATCTGTAAACTGGTTAATGAAGATAATAAATGACCTTGAAG
>TRINITY_DN41670_c0_g1_i3 from sample A7 / Example unspliced isoform:TTCAAAATCAGATTCAAGGGCTTAACTTAACCGAAGAGCATCGTGTTCAAGCGCTCGGGTGGCGTTCATGTGACCCAGTTACTCATCCCACCAGTGCTGAAAGTCTCGCACGTATAACTTTTTCTCTCGTGGAATATTGCAATCAGCATTCACAGGCGGAGGGGCAGGAGGATTAGCGATTGAAGATTGAGTGAAGGCGC
ACAGGGCAAAATATGGCGGAAGAGGCAGTTCTAGGGTTTTTACAGTCCCACGATGAGATTTCCCATTCAGGGGAGTTCGCAGCTTCCAAAGGGATCGACCATTCCGAGCTCTTGAACGTGATTAAGAGTCTCCATGGCTTCAGACTCGTCGACGCCCAGGATATTAAGACTGAGAAGTGGAATCTTACTGAAGAAGGTGA
AGCATATGCCACTTCAGGATCGCCAGAAGTACAATTTTTCTTAGCTATCCCACCGGAAGGGATCTCTCGTGACGAACTACAGAGGAAGGTCGGTGGCTCTGTATATAACATAGGAAGTGCACAAGCAATGAAAAAAAAATGGGTGGAGCTTGGCAAACTATTAGTATGTCGAAAGGTGGAAAAAGTTGAAGACCGAGTCA
AGGAGTTGTTGATTAAAATAAAGGATGGTCAGGAGGTTGATTCAAAGGACATTCTTGATCTGAAGAAACGGAAGCTGATTGCTTTGCAATCATGGAAGGGCTACTCTTTAAGAAAAGGTCCCAACTATGCTCCAAAGAGAATAAAGGCAGCAACCGATTTAACTCGCGAGCAATTACAAAGGGGCACTTGGCAGGAGCTA
GAGTTCAAGGAATACAATTTCAATGCACTGGGACAACCCACAGAAGGTGGCCATCTGCATCCTTTGCTGAAGGTACGGGCACAATTTAGAGAAATCTTCCTAGAAATGGGATTCGAAGAGATGCCAACAAATAACTTCGTGGAGAGTAGTTTTTGGAACTTTGATGCTCTTTTCCAACCACAGCAACACCCTGCTCGAGA
TTCACATGATACATTTTTCTTAAAAGTTCCCGCAAATACTCGAACATTACCTGAAGATTATTTACGGAGGGTGCAAGAAGTGCATGAATCTGGTGGCTATGGATCTAGAGGATACGGGTATGACTGGAAAAGGGAGGAAGCTGAAAAGAATTTACTCCGCACCCATACAACAGCTGTTTCGTCTAGAATGCTTTATGCAC
TGGCTCAGAAACCTTTTACCCCCAAAAGATACTTCTCTATTGATCGGGTTTTTCGAAATGAGGCAGTGGATAGGACCCATCTTGCGGAGTTTCACCAAATTGAAGGTGTTGTCTGTGACAGGGGCCTTACATTAGGTGATTTGATAGGCGTTCTGAATGACTTCTTCTCACGTCTAGGTAATATTTAATATCAATCTTCT
ATTTTAACTCCTAGGTGGTGTGGTCAATTTTCTATTTTTTTAGTGATATTGGGTTTGGGTTATCTTCCTTTTACCCATGTGCTGAAGGACTTTTGATTCCTTGCTCATGTCTGAATACAAGACATGCAATGTATTGCACTTGCTATTTTGGTTGGTACCTCTGACCCACAGTTTCTTTTAGGTATGATGAAATTACGATT
CAAACCTGCATACAATCCTTACACAGAGCCCAGTATGGAAATTTTCAGgtattatcttatgcattttaaagctttggaattcatatcaagttttatagcattcctgtttgaatgttttcttgttattgtgtagCTACCATGAAGGATTAAAAAAGTGGGTAGAGGTTGGTAATTCTGGCATGTTCCGCCCAGAAATGTTG
CTCCCTATGGGGTTACCAGAAGATGTTTCTGTTATTGCGTGGGGTTTGTCGCTAGAGCGACCTACGATGATATTATATGGCATAGATAATATACGAGATCTCTTTGGGCACAAGGTGGATCTAAATCTTATCAAGAAAAATCCCATTTGCCGCCTTGGCATGCAATAATACCCTAGGCAATATGATGGGCATTTTTAATT
GTAGAAATGATTCATTTTTGTATCGTGAGGTTTGCTGGAATGAATATCAAGAATTGAGCAAAAGTAGCAGAAATGCATTTCAATAATGAAGCTAACAGCGTTTCTTGAATTTCCTCTCTTTGAGTGAGGTTGCATTTGAGGTTGTCCCTATTTGGGTATGGCAATATTTGATATAACCAGAGAAAATATTGAAATCATTT
TGTTTAAAAGTTTTAGTTATATTTCATATCCCAAGTATTTGGAGCAAAATTATATCCAAGGATTTTTTATTGGCCAAAGCTTACCACATTTTTTATGACGTAGGAAAATATCTACAAGGTTGATGGTTTTGCTTGTTAAATATCCAATGTTAGTGGGCAGAATTTTTATACGAGGAAAGCAACATTAGCGAGTTTATTCC
GAAGAATCTAGATATATTCAAGTGTCCTCCAGAATCTAGTGCATCTGTAAACTGGTTAATGAAGATAATAAATGACCTTGAAG
Intron 4 GTATTATCTT ... TATTGTGTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 25.42 | 44 | 11 | 15 |
| A2 | 21.74 | 18 | 1 | 5 |
| A3 | 13.95 | 37 | 0 | 6 |
| A4 | 13.79 | 25 | 1 | 4 |
| A5 | 25 | 18 | 1 | 6 |
| A6 | 18.63 | 166 | 0 | 38 |
| A7 | 25.51 | 146 | 2 | 50 |
| A8 | 22.89 | 192 | 2 | 57 |
| A9 | 23.23 | 119 | 0 | 36 |
| A10 | 14.56 | 88 | 0 | 15 |
>TRINITY_DN117655_c0_g1_i1 from sample A1 / Example spliced isoformATTCAAAATCAGATTCAAGGGCTTAACTTAACCGAAGAGCATCGTGTTCAAGCGCTCGGGTGGCGTTCATGTGACCCAGTTACTCATCCCACCAGTGCTGAAAGTCTCGCACGTATAACTTTTTCTCTCGTGGAATATTGCAATCAGCATTCACAGGCGGAGGGGCAGGAGGATTAGCGATTGAAGATTGAGTGAAGGCG
CACAGGGCAAAATATGGCGGAAGAGGCAGTTCTAGGGTTTTTACAGTCCCACGATGAGATTTCCCATTCAGGGGAGTTCGCAGCTTCCAAAGGGATCGACCATTCCGAGCTCTTGAACGTGATTAAGAGTCTCCATGGCTTCAGACTCGTCGACGCCCAGGATATTAAGACTGAGAAGTGGAATCTTACTGAAGAAGGTG
AAGCATATGCCACTTCAGGATCGCCAGAAGTACAATTTTTCTTAGCTATCCCACCGGAAGGGATCTCTCGTGACGAACTACAGAGGAAGGTCGGTGGCTCTGTATATAACATAGGAAGTGCACAAGCAATGAAAAAAAAATGGGTGGAGCTTGGCAAACTATTAGTATGTCGAAAGGTGGAAAAAGTTGAAGACCGAGTC
AAGGAGTTGTTGATTAAAATAAAGGATGGTCAGGAGGTTGATTCAAAGGACATTCTTGATCTGAAGAAACGGAAGCTGATTGCTTTGCAATCATGGAAGGGATACTCTTTAAGAAAAGGTCCCAACTATGCTCCAAAGAGAATAAAGGCAGCAACTGATTTAACTCGCGAGCAATTACAAAGGGGCACTTGGCAGGAGCT
AGAGTTCAAGGAATACAATTTCAATGCACTGGGACAACCCACAGAAGGTGGCCATCTGCATCCTTTGCTGAAGGTACGGGCACAATTTAGAGAAATCTTCCTAGAAATGGGATTCGAAGAGATGCCAACAAATAACTTCGTGGAGAGTAGTTTTTGGAACTTTGATGCTCTTTTCCAACCACAGCAACACCCTGCTCGAG
ATTCACATGATACATTTTTCTTAAAAGTTCCCGCAAATACTCGAACATTACCTGAAGATTATTTACGGAGGGTGCAAGAAGTGCATGAATCTGGTGGCTATGGATCTAGAGGATACGGGTATGACTGGAAAAGGGAGGAAGCTGAAAAGAATTTACTCCGCACCCATACAACAGCTGTTTCGTCTAGAATGCTTTATGCA
CTGGCTCAGAAACCTTTTACCCCCAAAAGATACTTCTCTATTGATCGGGTTTTTCGAAATGAGGCAGTGGATAGGACCCATCTTGCGGAGTTTCACCAAATTGAAGGTGTTGTCTGTGACAGGGGCCTTACATTAGGTGATTTGATAGGCGTTCTGAATGACTTCTTCTCACGTCTAGGTATGATGAAATTACGATTCAA
ACCTGCATACAATCCTTACACAGAGCCCAGTATGGAAATTTTCAGCTACCATGAAGGATTAAAAAAGTGGGTAGAGGTTGGTAATTCTGGCATGTTCCGCCCAGAAATGTTGCTCCCTATGGGGTTACCAGAAGATGTTTCTGTTATTGCGTGGGGTTTGTCGCTAGAGCGACCTACGATGATATTATATGGCATAGATA
ATATACGAGATCTCTTTGGGCACAAGGTGGATCTAAATCTTATCAAGAAAAATCCCATTTGCCGCCTTGGCATGCAATAATACCCTAGGCAATATGATGGGCATTTTTAATTGTAGAAATGATTCATTTTTGTATCGTGAGGTTTGCTGGAATGAATATCAAGAATTGAGCAAAAGTAGCAGAAATGCATTTCAATAATG
AAGCTAACAGCGTTTCTTGGATTTCCTCTCTTTGAGTTAGGTTGCATTTGAGGTTGTCCCTATTTGGGTATGGCAATATTTGATATAACCAGAGAAAATATTGAAATCATTTTGTTTAAAAGTTTTAGTTATATTTCATATCCCAAGTATTTGGAGCAAAATTATATCCAAGGATTTTTTATTGGCC
>TRINITY_DN117655_c0_g1_i6 from sample A1 / Example unspliced isoform:ATTCAAAATCAGATTCAAGGGCTTAACTTAACCGAAGAGCATCGTGTTCAAGCGCTCGGGTGGCGTTCATGTGACCCAGTTACTCATCCCACCAGTGCTGAAAGTCTCGCACGTATAACTTTTTCTCTCGTGGAATATTGCAATCAGCATTCACAGGCGGAGGGGCAGGAGGATTAGCGATTGAAGATTGAGTGAAGGCG
CACAGGGCAAAATATGGCGGAAGAGGCAGTTCTAGGGTTTTTACAGTCCCACGATGAGATTTCCCATTCAGGGGAGTTCGCAGCTTCCAAAGGGATCGACCATTCCGAGCTCTTGAACGTGATTAAGAGTCTCCATGGCTTCAGACTCGTCGACGCCCAGGATATTAAGACTGAGAAGTGGAATCTTACTGAAGAAGGTG
AAGCATATGCCACTTCAGGATCGCCAGAAGTACAATTTTTCTTAGCTATCCCACCGGAAGGGATCTCTCGTGACGAACTACAGAGGAAGGTCGGTGGCTCTGTATATAACATAGGAAGTGCACAAGCAATGAAAAAAAAATGGGTGGAGCTTGGCAAACTATTAGTATGTCGAAAGGTGGAAAAAGTTGAAGACCGAGTC
AAGGAGTTGTTGATTAAAATAAAGGATGGTCAGGAGGTTGATTCAAAGGACATTCTTGATCTGAAGAAACGGAAGCTGATTGCTTTGCAATCATGGAAGGGATACTCTTTAAGAAAAGGTCCCAACTATGCTCCAAAGAGAATAAAGGCAGCAACTGATTTAACTCGCGAGCAATTACAAAGGGGCACTTGGCAGGAGCT
AGAGTTCAAGGAATACAATTTCAATGCACTGGGACAACCCACAGAAGGTGGCCATCTGCATCCTTTGCTGAAGGTACGGGCACAATTTAGAGAAATCTTCCTAGAAATGGGATTCGAAGAGATGCCAACAAATAACTTCGTGGAGAGTAGTTTTTGGAACTTTGATGCTCTTTTCCAACCACAGCAACACCCTGCTCGAG
ATTCACATGATACATTTTTCTTAAAAGGTTATTCATTTTAGTTGTCATTAGGCGAATTCATTCAATTACCTGCTTATGCAATTTTAATTCCTACATATTAATATATGATATATTAATATGGAAAGCTCTATCAAGATAGCTTTTGGCTAATGGATATGGAATATATTAATATAGAAAACTGTATCAAGATAGTTTTTGGC
TAATGGTTGCTGAGCATTTGCAGTTCCCGCAAATACTCGAACATTACCTGAAGATTATTTACGGAGGGTGCAAGAAGTGCATGAATCTGGTGGCTATGGATCTAGAGGATACGGGTATGACTGGAAAAGGGAGGAAGCTGAAAAGAATTTACTCCGCACCCATACAACAGCTGTTTCGTCTAGAATGCTTTATGCACTGG
CTCAGAAACCTTTTACCCCCAAAAGATACTTCTCTATTGATCGGGTTTTTCGAAATGAGGCAGTGGATAGGACCCATCTTGCGGAGTTTCACCAAATTGAAGGTGTTGTCTGTGACAGGGGCCTTACATTAGGTGATTTGATAGGCGTTCTGAATGACTTCTTCTCACGTCTAGGTAATATTTAATATCAATCTTCTATT
TTAACTCCTAGGTGGTGTGGTCAATTTTCTATTTTTTTAGTGATATTGGGTTTGGGTTATCTTCCTTTTACCCATGTGCTGAAGGACTTTTGATTCCTTGCTCATGTCTGAATACAAGACATGCAATGTATTGCACTTGCTATTTTGGTTGGTACCTCTGACCCACAGTTTCTTTTAGGTATGATGAAATTACGATTCAA
ACCTGCATACAATCCTTACACAGAGCCCAGTATGGAAATTTTCAGgtattatcttatgcattttaaagctttggaattcactatcaagttttatagcattcctgtttgaatgttttcttgttattgtgtagCTACCATGAAGGATTAAAAAAGTGGGTAGAGGTTGGTAATTCTGGCATGTTCCGCCCAGAAATGTTGCT
CCCTATGGGGTTACCAGAAGATGTTTCTGTTATTGCGTGGGGTTTGTCGCTAGAGCGACCTACGATGATATTATATGGCATAGATAATATACGAGATCTCTTTGGGCACAAGGTGGATCTAAATCTTATCAAGAAAAATCCCATTTGCCGCCTTGGCATGCAATAATACCCTAGGCAATATGATGGGCATTTTTAATTGT
AGAAATGATTCATTTTTGTATCGTGAGGTTTGCTGGAATGAATATCAAGAATTGAGCAAAAGTAGCAGAAATGCATTTCAATAATGAAGCTAACAGCGTTTCTTGGATTTCCTCTCTTTGAGTTAGGTTGCATTTGAGGTTGTCCCTATTTGGGTATGGCAATATTTGATATAACCAGAGAAAATATTGAAATCATTTTG
TTTAAAAGTTTTAGTTATATTTCATATCCCAAGTATTTGGAGCAAAATTATATCCAAGGATTTTTTATTGGCC
Intron 5 GTAATGATTG ... TTTTGTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 37.5 | 20 | 0 | 12 |
| A2 | 0 | 13 | 0 | 0 |
| A3 | 20 | 24 | 0 | 6 |
| A4 | 32 | 17 | 0 | 8 |
| A5 | 40 | 3 | 0 | 2 |
| A6 | 25.71 | 182 | 0 | 63 |
| A7 | 27.8 | 161 | 3 | 62 |
| A8 | 30 | 224 | 0 | 96 |
| A9 | 29.31 | 164 | 0 | 68 |
| A10 | 28.05 | 59 | 2 | 23 |
>TRINITY_DN41670_c0_g1_i3 from sample A7 / Example spliced isoformTTCAAAATCAGATTCAAGGGCTTAACTTAACCGAAGAGCATCGTGTTCAAGCGCTCGGGTGGCGTTCATGTGACCCAGTTACTCATCCCACCAGTGCTGAAAGTCTCGCACGTATAACTTTTTCTCTCGTGGAATATTGCAATCAGCATTCACAGGCGGAGGGGCAGGAGGATTAGCGATTGAAGATTGAGTGAAGGCGC
ACAGGGCAAAATATGGCGGAAGAGGCAGTTCTAGGGTTTTTACAGTCCCACGATGAGATTTCCCATTCAGGGGAGTTCGCAGCTTCCAAAGGGATCGACCATTCCGAGCTCTTGAACGTGATTAAGAGTCTCCATGGCTTCAGACTCGTCGACGCCCAGGATATTAAGACTGAGAAGTGGAATCTTACTGAAGAAGGTGA
AGCATATGCCACTTCAGGATCGCCAGAAGTACAATTTTTCTTAGCTATCCCACCGGAAGGGATCTCTCGTGACGAACTACAGAGGAAGGTCGGTGGCTCTGTATATAACATAGGAAGTGCACAAGCAATGAAAAAAAAATGGGTGGAGCTTGGCAAACTATTAGTATGTCGAAAGGTGGAAAAAGTTGAAGACCGAGTCA
AGGAGTTGTTGATTAAAATAAAGGATGGTCAGGAGGTTGATTCAAAGGACATTCTTGATCTGAAGAAACGGAAGCTGATTGCTTTGCAATCATGGAAGGGCTACTCTTTAAGAAAAGGTCCCAACTATGCTCCAAAGAGAATAAAGGCAGCAACCGATTTAACTCGCGAGCAATTACAAAGGGGCACTTGGCAGGAGCTA
GAGTTCAAGGAATACAATTTCAATGCACTGGGACAACCCACAGAAGGTGGCCATCTGCATCCTTTGCTGAAGGTACGGGCACAATTTAGAGAAATCTTCCTAGAAATGGGATTCGAAGAGATGCCAACAAATAACTTCGTGGAGAGTAGTTTTTGGAACTTTGATGCTCTTTTCCAACCACAGCAACACCCTGCTCGAGA
TTCACATGATACATTTTTCTTAAAAGTTCCCGCAAATACTCGAACATTACCTGAAGATTATTTACGGAGGGTGCAAGAAGTGCATGAATCTGGTGGCTATGGATCTAGAGGATACGGGTATGACTGGAAAAGGGAGGAAGCTGAAAAGAATTTACTCCGCACCCATACAACAGCTGTTTCGTCTAGAATGCTTTATGCAC
TGGCTCAGAAACCTTTTACCCCCAAAAGATACTTCTCTATTGATCGGGTTTTTCGAAATGAGGCAGTGGATAGGACCCATCTTGCGGAGTTTCACCAAATTGAAGGTGTTGTCTGTGACAGGGGCCTTACATTAGGTGATTTGATAGGCGTTCTGAATGACTTCTTCTCACGTCTAGGTAATATTTAATATCAATCTTCT
ATTTTAACTCCTAGGTGGTGTGGTCAATTTTCTATTTTTTTAGTGATATTGGGTTTGGGTTATCTTCCTTTTACCCATGTGCTGAAGGACTTTTGATTCCTTGCTCATGTCTGAATACAAGACATGCAATGTATTGCACTTGCTATTTTGGTTGGTACCTCTGACCCACAGTTTCTTTTAGGTATGATGAAATTACGATT
CAAACCTGCATACAATCCTTACACAGAGCCCAGTATGGAAATTTTCAGGTATTATCTTATGCATTTTAAAGCTTTGGAATTCATATCAAGTTTTATAGCATTCCTGTTTGAATGTTTTCTTGTTATTGTGTAGCTACCATGAAGGATTAAAAAAGTGGGTAGAGGTTGGTAATTCTGGCATGTTCCGCCCAGAAATGTTG
CTCCCTATGGGGTTACCAGAAGATGTTTCTGTTATTGCGTGGGGTTTGTCGCTAGAGCGACCTACGATGATATTATATGGCATAGATAATATACGAGATCTCTTTGGGCACAAGGTGGATCTAAATCTTATCAAGAAAAATCCCATTTGCCGCCTTGGCATGCAATAATACCCTAGGCAATATGATGGGCATTTTTAATT
GTAGAAATGATTCATTTTTGTATCGTGAGGTTTGCTGGAATGAATATCAAGAATTGAGCAAAAGTAGCAGAAATGCATTTCAATAATGAAGCTAACAGCGTTTCTTGAATTTCCTCTCTTTGAGTGAGGTTGCATTTGAGGTTGTCCCTATTTGGGTATGGCAATATTTGATATAACCAGAGAAAATATTGAAATCATTT
TGTTTAAAAGTTTTAGTTATATTTCATATCCCAAGTATTTGGAGCAAAATTATATCCAAGGATTTTTTATTGGCCAAAGCTTACCACATTTTTTATGACGTAGGAAAATATCTACAAGGTTGATGGTTTTGCTTGTTAAATATCCAATGTTAGTGGGCAGAATTTTTATACGAGGAAAGCAACATTAGCGAGTTTATTCC
GAAGAATCTAGATATATTCAAGTGTCCTCCAGAATCTAGTGCATCTGTAAACTGGTTAATGAAGATAATAAATGACCTTGAAG
>TRINITY_DN41670_c0_g1_i1 from sample A7 / Example unspliced isoform:CGAGATCTCTTTGGGCACAAGgtaatgattgctgtattagtgagtttaatatcttaaatggattctgtcgttgtggtatctgctgcttttagctctttgtaaagttagttcttatttgtttaagtattataatatttttggagatgattttattttgtgcagGTGGATCTAAATCTTATCAAGAAAAATCCCATTTGCCG
CCTTGGCATGCAATAATACCCTAGGCAATATGATGGGCATTTTTAATTGTAGAAATGATTCATTTTTGTATCGTGAGGTTTGCTGGAATGAATATCAAGAATTGAGCAAAAGTAGCAGAAATGCATTTCAATAATGAAGCTAACAGCGTTTCTTGAATTTCCTCTCTTTGAGTGAGGTTGCATTTGAGGTTGTCCCTATT
TGGGTATGGCAATATTTGATATAACCAGAGAAAATATTGAAATCATTTTGTTTAAAAGTTTTAGTTATATTTCATATCCCAAGTATTTGGAGCAAAATTATATCCAAGGATTTTTTATTGGCCAAAGCTTACCACATTTTTTATGACGTAGGAAAATATCTACAAGGTTGATGGTTTTGCTTGTTAAATATCCAATGTTA
GTGGGCAGAATTTTTATACGAGGAAAGCAACATTAGCGAGTTTATTCCGAAGAATCTAGATATATTCAAGTGTCCTCCAGAATCTAGTGCATCTGTAAACTGGTTAATGAAGATAATAAATGACCTTGAAG
Intron 6 GTAATATTTA ... TTTCTTTTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 11.81 | 41 | 8.8 | 6 |
| A2 | 8.7 | 21 | 4.8 | 2 |
| A3 | 9.38 | 36 | 3.8 | 4 |
| A4 | 8.36 | 25 | 1.5 | 2.5 |
| A5 | 2.21 | 31 | 4.5 | 0.8 |
| A6 | 4.06 | 134 | 7.5 | 6.5 |
| A7 | 5.9 | 149 | 21.5 | 10.3 |
| A8 | 5.21 | 147.3 | 7.5 | 9.8 |
| A9 | 4.93 | 104 | 6.8 | 5.8 |
| A10 | 5.98 | 105 | 10.5 | 8.3 |
>TRINITY_DN117655_c0_g1_i1 from sample A1 / Example spliced isoformATTCAAAATCAGATTCAAGGGCTTAACTTAACCGAAGAGCATCGTGTTCAAGCGCTCGGGTGGCGTTCATGTGACCCAGTTACTCATCCCACCAGTGCTGAAAGTCTCGCACGTATAACTTTTTCTCTCGTGGAATATTGCAATCAGCATTCACAGGCGGAGGGGCAGGAGGATTAGCGATTGAAGATTGAGTGAAGGCG
CACAGGGCAAAATATGGCGGAAGAGGCAGTTCTAGGGTTTTTACAGTCCCACGATGAGATTTCCCATTCAGGGGAGTTCGCAGCTTCCAAAGGGATCGACCATTCCGAGCTCTTGAACGTGATTAAGAGTCTCCATGGCTTCAGACTCGTCGACGCCCAGGATATTAAGACTGAGAAGTGGAATCTTACTGAAGAAGGTG
AAGCATATGCCACTTCAGGATCGCCAGAAGTACAATTTTTCTTAGCTATCCCACCGGAAGGGATCTCTCGTGACGAACTACAGAGGAAGGTCGGTGGCTCTGTATATAACATAGGAAGTGCACAAGCAATGAAAAAAAAATGGGTGGAGCTTGGCAAACTATTAGTATGTCGAAAGGTGGAAAAAGTTGAAGACCGAGTC
AAGGAGTTGTTGATTAAAATAAAGGATGGTCAGGAGGTTGATTCAAAGGACATTCTTGATCTGAAGAAACGGAAGCTGATTGCTTTGCAATCATGGAAGGGATACTCTTTAAGAAAAGGTCCCAACTATGCTCCAAAGAGAATAAAGGCAGCAACTGATTTAACTCGCGAGCAATTACAAAGGGGCACTTGGCAGGAGCT
AGAGTTCAAGGAATACAATTTCAATGCACTGGGACAACCCACAGAAGGTGGCCATCTGCATCCTTTGCTGAAGGTACGGGCACAATTTAGAGAAATCTTCCTAGAAATGGGATTCGAAGAGATGCCAACAAATAACTTCGTGGAGAGTAGTTTTTGGAACTTTGATGCTCTTTTCCAACCACAGCAACACCCTGCTCGAG
ATTCACATGATACATTTTTCTTAAAAGTTCCCGCAAATACTCGAACATTACCTGAAGATTATTTACGGAGGGTGCAAGAAGTGCATGAATCTGGTGGCTATGGATCTAGAGGATACGGGTATGACTGGAAAAGGGAGGAAGCTGAAAAGAATTTACTCCGCACCCATACAACAGCTGTTTCGTCTAGAATGCTTTATGCA
CTGGCTCAGAAACCTTTTACCCCCAAAAGATACTTCTCTATTGATCGGGTTTTTCGAAATGAGGCAGTGGATAGGACCCATCTTGCGGAGTTTCACCAAATTGAAGGTGTTGTCTGTGACAGGGGCCTTACATTAGGTGATTTGATAGGCGTTCTGAATGACTTCTTCTCACGTCTAGGTATGATGAAATTACGATTCAA
ACCTGCATACAATCCTTACACAGAGCCCAGTATGGAAATTTTCAGCTACCATGAAGGATTAAAAAAGTGGGTAGAGGTTGGTAATTCTGGCATGTTCCGCCCAGAAATGTTGCTCCCTATGGGGTTACCAGAAGATGTTTCTGTTATTGCGTGGGGTTTGTCGCTAGAGCGACCTACGATGATATTATATGGCATAGATA
ATATACGAGATCTCTTTGGGCACAAGGTGGATCTAAATCTTATCAAGAAAAATCCCATTTGCCGCCTTGGCATGCAATAATACCCTAGGCAATATGATGGGCATTTTTAATTGTAGAAATGATTCATTTTTGTATCGTGAGGTTTGCTGGAATGAATATCAAGAATTGAGCAAAAGTAGCAGAAATGCATTTCAATAATG
AAGCTAACAGCGTTTCTTGGATTTCCTCTCTTTGAGTTAGGTTGCATTTGAGGTTGTCCCTATTTGGGTATGGCAATATTTGATATAACCAGAGAAAATATTGAAATCATTTTGTTTAAAAGTTTTAGTTATATTTCATATCCCAAGTATTTGGAGCAAAATTATATCCAAGGATTTTTTATTGGCC
>TRINITY_DN117655_c0_g1_i6 from sample A1 / Example unspliced isoform:ATTCAAAATCAGATTCAAGGGCTTAACTTAACCGAAGAGCATCGTGTTCAAGCGCTCGGGTGGCGTTCATGTGACCCAGTTACTCATCCCACCAGTGCTGAAAGTCTCGCACGTATAACTTTTTCTCTCGTGGAATATTGCAATCAGCATTCACAGGCGGAGGGGCAGGAGGATTAGCGATTGAAGATTGAGTGAAGGCG
CACAGGGCAAAATATGGCGGAAGAGGCAGTTCTAGGGTTTTTACAGTCCCACGATGAGATTTCCCATTCAGGGGAGTTCGCAGCTTCCAAAGGGATCGACCATTCCGAGCTCTTGAACGTGATTAAGAGTCTCCATGGCTTCAGACTCGTCGACGCCCAGGATATTAAGACTGAGAAGTGGAATCTTACTGAAGAAGGTG
AAGCATATGCCACTTCAGGATCGCCAGAAGTACAATTTTTCTTAGCTATCCCACCGGAAGGGATCTCTCGTGACGAACTACAGAGGAAGGTCGGTGGCTCTGTATATAACATAGGAAGTGCACAAGCAATGAAAAAAAAATGGGTGGAGCTTGGCAAACTATTAGTATGTCGAAAGGTGGAAAAAGTTGAAGACCGAGTC
AAGGAGTTGTTGATTAAAATAAAGGATGGTCAGGAGGTTGATTCAAAGGACATTCTTGATCTGAAGAAACGGAAGCTGATTGCTTTGCAATCATGGAAGGGATACTCTTTAAGAAAAGGTCCCAACTATGCTCCAAAGAGAATAAAGGCAGCAACTGATTTAACTCGCGAGCAATTACAAAGGGGCACTTGGCAGGAGCT
AGAGTTCAAGGAATACAATTTCAATGCACTGGGACAACCCACAGAAGGTGGCCATCTGCATCCTTTGCTGAAGGTACGGGCACAATTTAGAGAAATCTTCCTAGAAATGGGATTCGAAGAGATGCCAACAAATAACTTCGTGGAGAGTAGTTTTTGGAACTTTGATGCTCTTTTCCAACCACAGCAACACCCTGCTCGAG
ATTCACATGATACATTTTTCTTAAAAGGTTATTCATTTTAGTTGTCATTAGGCGAATTCATTCAATTACCTGCTTATGCAATTTTAATTCCTACATATTAATATATGATATATTAATATGGAAAGCTCTATCAAGATAGCTTTTGGCTAATGGATATGGAATATATTAATATAGAAAACTGTATCAAGATAGTTTTTGGC
TAATGGTTGCTGAGCATTTGCAGTTCCCGCAAATACTCGAACATTACCTGAAGATTATTTACGGAGGGTGCAAGAAGTGCATGAATCTGGTGGCTATGGATCTAGAGGATACGGGTATGACTGGAAAAGGGAGGAAGCTGAAAAGAATTTACTCCGCACCCATACAACAGCTGTTTCGTCTAGAATGCTTTATGCACTGG
CTCAGAAACCTTTTACCCCCAAAAGATACTTCTCTATTGATCGGGTTTTTCGAAATGAGGCAGTGGATAGGACCCATCTTGCGGAGTTTCACCAAATTGAAGGTGTTGTCTGTGACAGGGGCCTTACATTAGGTGATTTGATAGGCGTTCTGAATGACTTCTTCTCACGTCTAGgtaatatttaatatcaatcttctatt
ttaactcctaggtggtgtggtcaattttctatttttttagtgatattgggtttgggttatcttccttttacccatgtgctgaaggacttttgattccttgctcatgtctgaatacaagacatgcaatgtattgcacttgctattttggttggtacctctgacccacagtttcttttagGTATGATGAAATTACGATTCAA
ACCTGCATACAATCCTTACACAGAGCCCAGTATGGAAATTTTCAGGTATTATCTTATGCATTTTAAAGCTTTGGAATTCACTATCAAGTTTTATAGCATTCCTGTTTGAATGTTTTCTTGTTATTGTGTAGCTACCATGAAGGATTAAAAAAGTGGGTAGAGGTTGGTAATTCTGGCATGTTCCGCCCAGAAATGTTGCT
CCCTATGGGGTTACCAGAAGATGTTTCTGTTATTGCGTGGGGTTTGTCGCTAGAGCGACCTACGATGATATTATATGGCATAGATAATATACGAGATCTCTTTGGGCACAAGGTGGATCTAAATCTTATCAAGAAAAATCCCATTTGCCGCCTTGGCATGCAATAATACCCTAGGCAATATGATGGGCATTTTTAATTGT
AGAAATGATTCATTTTTGTATCGTGAGGTTTGCTGGAATGAATATCAAGAATTGAGCAAAAGTAGCAGAAATGCATTTCAATAATGAAGCTAACAGCGTTTCTTGGATTTCCTCTCTTTGAGTTAGGTTGCATTTGAGGTTGTCCCTATTTGGGTATGGCAATATTTGATATAACCAGAGAAAATATTGAAATCATTTTG
TTTAAAAGTTTTAGTTATATTTCATATCCCAAGTATTTGGAGCAAAATTATATCCAAGGATTTTTTATTGGCC