sp|Q9FLB0|RH18_ARATH ----> DEAD-box ATP-dependent RNA helicase 18
Intron 1 GTATTTGTGA ... TTTCTATCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 12.5 | 42 | 2 | 6 |
| A2 | 7.89 | 35 | 8.4 | 3 |
| A3 | 27.78 | 13 | 3.8 | 5 |
| A4 | 14.29 | 30 | 0.8 | 5 |
| A5 | 31.58 | 13 | 0.4 | 6 |
| A6 | 5.56 | 17 | 0.8 | 1 |
| A7 | 20.33 | 98 | 5.4 | 25 |
| A8 | 18.84 | 56 | 7.4 | 13 |
| A9 | 22.64 | 82 | 6 | 24 |
| A10 | 20.99 | 64 | 4.4 | 17 |
>TRINITY_DN44524_c0_g3_i1 from sample A7 / Example spliced isoformGTCGGAGGCAGAGGTAGAGACTTCGAAATTTGACGGTCATTGAGAGAGTAACCTATGAAAAAATATACTATAAAACTCTAATAATAAGATTTGCTCAGTAGCTACTAGTATTTAAGCCTTGTTTGGTTTTTTCACTGCGATCCTTTAAAATCTGCGTCATGCTTTTGTGCAAAGTCTAAAACCCCGAGTGTTTCCGCGAA
ATTTTCAGCTTGGCTATGGCGTCGGAGAAGAAGAGAGGTTTAACAGACAAAGTCTTTTCCGAGTTGCAGCCCCCTCTATCAGAGGCCACTCTGAAGGTGTTGGAGGATGGCGGCTTCCATTACTGTACGCCTGTACAGGCCGCCACCATCCCTCTGTTATGCTCTTTCAAGGACGTCGCGGTCGATGCTGCCACTGGCTC
TGGGAAGACGCTCGCGTTCGTTGTTCCGCTCGTCGAAATTCTCAGGCGCCTCACCGACCCTCTCAAGTCTCACGAGGTTGCAGGGATCATAATTTCTCCAACAAGAGAATTGGCATCCCAAATATACCATGTGATAGAGCCTTTTGTTTCTACTCTTCCCAATCTCAGATGCATGCTTGTCGTTGGTGGAACAGATGTGG
CAACAGATGTAAAGAAACTAAAGGAGGACGGGGTGAACATAATTGTAGGTACACCTGGGCGCTTAGATGATATTATGGAGCGAATAAACATTCTAGACTTTCGGCGCCTTGAGGTTCTTATTTTAGATGAGGCAGATAGGCTCTTGGATATGGGTTTTCAGAGACAGCTGTCATCCATTATAGTCCGTTTACCAAAGCAA
CGACGAACAGGCCTTTTTTCTGCTACCCAAACTGAGGCAGTTGAAGAGCTTTCAAGGGCTGGGCTTAGGAACCCAGTCAGGGTTGAAGTTAGAGTAGAAGCAAAGTCTAAGAGTCAATCAGCCACTATGACTGATATGGCTTGCTCGAGGACACCTGAAGGGCTTCACATTGAGTATTTAAAATGTGAGGCAGATGAAAA
GCCTTCACAACTTGTGCATTTCTTGTCGGAACACAATTCAAACAAAATTATTGTATACTACATGACATGTGCCTCTGTTGATTATTGGGGAGCTGTACTACCGCAACTTGAAGTTCTTAAAGGATGTCCTCTGGTTGCTCTTCATGGGAGGATGAAGCAGTCTATGAGGGAGAAAGCATTACAGTCTTTCACAGGACTTA
CTGCTGGATTTCTTCTATGCACTGACGTGGCAGCAAGGGGTCTTGATATTCCTGATGTTGACTGGATTGTGCAGTATGATCCTCCACAAGACCCTAATGTATTTGTACATAGGGTTGGGAGAACAGCACGCATGGGAAGATCTGGGAATGCACTTGCATTCCTCCTACCTAAGGAAGATGCTTATGTGGAGTTTTTACGT
ATTCGCAAGATCCCTCTTCAAGAGAAAAAATCTTCAGTGACTACTACTGACATTATTCCACAGATACGTGCAGCTGCGAAGGAGGATCGAGATGTAATGGAGAAGGGATTGAAGGCTTTTGTGTCATTTATTCGTGCATACAAAGAGCACCATTGTTCCTATATCTTCAGGTGGAAAGAATTGGAGGTAGGGAAGTTAGC
AATGGGCTGTGGTCTACTGCAGCTTCCATCTATGCCTGAGCTTAAGCGGCGTACTTTATCAACAGATGGTTTTGTGCCTGTTGAAGGCATTGATCTGGGAGCAATCAAATACAAAGATAAAGCTCGTGAGAAACAACGTCAAAAGAACTTGGCAAAGAAACAACAAACAAGAGCTTTTCATGCAGATAAAGTAGAACGGC
ATAAGGTTGTGAGCAATGATGGTGGAGGGAAGAGATGCAGCAGACAGCGACGTGCTGTACAAGCCATTGAAGATGAGGAGGAAATGGAACGGGATTATCATCTGCTTAAAAAGTTAAAGAAAGGAGTTATTAGTGAAAGAGAGTTTGCAAGAGCAACATATACTGAGGATTGTTTAGATGAGGATGAGGATGAGGATGGG
GATGAGCATGGAGATGATGATCTATCTGTGCCTTCAACTCCAACTGGTCAGATTCATGAACCATCCTCAAATCTTCCTTTGCAAGTCCAGATTATGAAGGAAAACAGTCATCAAAGCTCAAAACATTGGCCTTCGCATAAATCGGGAAGAAAGAAACAATCCATGTCTGTAAAGACAAGTGCAATTGCCAAAATTGGTAA
ACACCATTTGAAAGGTTCCAGTAATAGGTATAAGTTGAAACAGACAAAGGGATCAAAGAAGAGAGGGCAGAGTAGGAGCAAAAGTTAGATTACTTTGCTTCCGTCTTTCATTATGGTAGAGTTACTAACTTACTATTCATATCTATTTCTCTGAAAACTTGTTATCTCCTTATGAATGACTTTTATGTAATTATTGCTTC
GATGTCTTGTAAAAGGTGACAAACTAGAACATTCCAAAGGCCAAAGTTCAGAATATTGACTGTTAGGTTCCAGGAATCTTGTGGTCTTTTATCTTTTGTATTTTTCTATGTTGCACAAGTTTCCAGAATGGGGGGATGGGGTTTACATGGGTATGGGTTTCCAGAACGGCTAGAAGTTTCCCCCAAATTTCCATGGATCA
ACAAAATTTTTGAACAGTTTTGAAAATTTTCAAAACAAAATAACCTTCCATGAGTCTATGATATCAGAAAGTAAAACTAAAAGCTAAAATTATAAGGTCCAATATTTGCTATTGTGTAAACTTGAGACCTTATTTTTTGCTTCGAGTGTGTTTCAATGATTTTATCAATTCACCATTGTATTTCAAGAAAGGTAAATGGC
ATGTGATTTTATGGTTCTGGTCTAGTTCCATGTTAGCATTTTTGCATGGCTTTAACAGTTCTTATATCAGTCC
>TRINITY_DN44524_c0_g3_i4 from sample A7 / Example unspliced isoform:TTTGTATGCAACTTTAGCAAAAAATATATTTTAACTGAAAATCATTAAGAAACCTTGTGTATATCTTTGTGTTTCAATATCATTTTCTTAGCATATGTGAGGTCAGAGCAAATACTGTGAACCTTTCTTGTGAGAATAATTTTTGCCTGTCAGTAAATTCTAATTTTGCTACTTGATCACCTGTCTAATAACATACCTAT
AGATACGTGCAGCTGCGAAGGAGGATCGAGATGTAATGGAGAAGGGATTGAAGGCTTTTGTGTCATTTATTCGTGCATACAAAGAGCACCATTGTTCCTATATCTTCAGgtatttgtgataattgttcaatgcatagtcagctagatacaagacaagaaggaataaatggtattcgttctttaagagtgaatgatttcta
tcagGTGGAAAGAATTGGAGGTAGGGAAGTTAGCAATGGGCTGTGGTCTACTGCAGCTTCCATCTATGCCTGAGCTTAAGCGGCGTACTTTATCAACAGATGGTTTTGTGCCTGTTGAAGGCATTGATCTGGGAGCAATCAAATACAAAGATAAAGCTCGTGAGAAACAACGTCAAAAGAACTTGGCAAAGAAACAACAA
ACAAGAGCTTTTCATGCAGATAAAGTAGAACGGCATAAGGTTGTGAGCAATGATGGTGGAGGGAAGAGATGCAGCAGACAGCGACGTGCTGTACAAGCCATTGAAGATGAGGAGGAAATGGAACGGGATTATCATCTGCTTAAAAAGTTAAAGAAAGGAGTTATTAGTGAAAGAGAGTTTGCAAGAGCAACAT
Intron 2 ATATACTGAG ... AAACTAGAAC
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 69.66 | 22 | 66 | 35 |
| A2 | 54.36 | 34 | 61 | 20 |
| A3 | 57.72 | 26 | 59 | 12 |
| A4 | 76.74 | 5 | 24 | 9 |
| A5 | 55 | 9 | 21 | 1 |
| A6 | 59.24 | 43 | 68 | 57 |
| A7 | 55.86 | 113 | 178 | 108 |
| A8 | 60.19 | 125 | 199 | 179 |
| A9 | 65.81 | 73 | 144 | 137 |
| A10 | 57.28 | 69 | 125 | 60 |
>TRINITY_DN44524_c0_g3_i2 from sample A7 / Example spliced isoformGCCAGGGGGGGCAGAGGTGAAAGGGCAATGAATCAATAGATGCCTTTCTTTGTATTCCGGGAGCGGAAGATATTTAAACCCCAACTAAGTCTGTCCGTCCAAAACAACCAAGCAGATCGGAGGCAGAGCTTGGCTATGGCGTCGGAGAAGAAGAGAGGTTTAACAGACAAAGTCTTTTCCGAGTTGCAGCCCCCTCTATC
AGAGGCCACTCTGAAGGTGTTGGAGGATGGCGGCTTCCATTACTGTACGCCTGTACAGGCCGCCACCATCCCTCTGTTATGCTCTTTCAAGGACGTCGCGGTCGATGCTGCCACTGGCTCTGGGAAGACGCTCGCGTTCGTTGTTCCGCTCGTCGAAATTCTCAGGCGCCTCACCGACCCTCTCAAGTCTCACGAGGTTG
CAGGGATCATAATTTCTCCAACAAGAGAATTGGCATCCCAAATATACCATGTGATAGAGCCTTTTGTTTCTACTCTTCCCAATCTCAGATGCATGCTTGTCGTTGGTGGAACAGATGTGGCAACAGATGTAAAGAAACTAAAGGAGGACGGGGTGAACATAATTGTAGGTACACCTGGGCGCTTAGATGATATTATGGAG
CGAATAAACATTCTAGACTTTCGGCGCCTTGAGGTTCTTATTTTAGATGAGGCAGATAGGCTCTTGGATATGGGTTTTCAGAGACAGCTGTCATCCATTATAGTCCGTTTACCAAAGCAACGACGAACAGGCCTTTTTTTCTGCTACCCAAACTGAGGCAGTTGAAGAGCTTTCAAGGGCTGGGCTTAGGAACCCAGTCA
GGGTTGAAGTTAGAGTAGAAGCAAAGTCTAAGAGTCAATCAGCCACTATGACTGATATGGCTTGCTCGAGGACACCTGAAGGGCTTCACATTGAGTATTTAAAATGTGAGGCAGATGAAAAGCCTTCACAACTTGTGCATTTCTTGTCGGAACACAATTCAAACAAAATTATTGTATACTACATGACATGTGCCTCTGTT
GATTATTGGGGAGCTGTACTACCGCAACTTGAAGTTCTTAAAGGATGTCCTCTGGTTGCTCTTCATGGGAGGATGAAGCAGTCTATGAGGGAGAAAGCATTACAGTCTTTCACAGGACTTACTGCTGGATTTCTTCTATGCACTGACGTGGCAGCAAGGGGTCTTGATATTCCTGATGTTGACTGGATTGTGCAGTATGA
TCCTCCACAAGACCCTAATGTATTTGTACATAGGGTTGGGAGAACAGCACGCATGGGAAGATCTGGGAATGCACTTGCATTCCTCCTACCTAAGGAAGATGCTTATGTGGAGTTTTTACGTATTCGCAAGATCCCTCTTCAAGAGAAAAAATCTTCAGTGACTACTACTGACATTATTCCACAGATACGTGCAGCTGCGA
AGGAGGATCGAGATGTAATGGAGAAGGGATTGAAGGCTTTTGTGTCATTTATTCGTGCATACAAAGAGCACCATTGTTCCTATATCTTCAGGTGGAAAGAATTGGAGGTAGGGAAGTTAGCAATGGGCTGTGGTCTACTGCAGCTTCCATCTATGCCTGAGCTTAAGCGGCGTACTTTATCAACAGATGGTTTTGTGCCT
GTTGAAGGCATTGATCTGGGAGCAATCAAATACAAAGATAAAGCTCGTGAGAAACAACGTCAAAAGAACTTGGCAAAGAAACAACAAACAAGAGCTTTTCATGCAGATAAAGTAGAACGGCATAAGGTTGTGAGCAATGATGGTGGAGGGAAGAGATGCAGCAGACAGCGACGTGCTGTACAAGCCATTGAAGATGAGGA
GGAAATGGAACGGGATTATCATCTGCTTAAAAAGTTAAAGAAAGGAGTTATTAGTGAAAGAGAGTTTGCAAGAGCAACATTCCAAAGGCCAAAGTTCAGAATATTGACTGTTAGGTTCCAGGAATCTTGTGGTCTTTTATCTTTTGTATTTTTCTATGTTGCACAAGTTTCCAGAATGGGGGGATGGGGTTTACATGGGT
ATGGGTTTCCAGAACGGCTAGAAGTTTCCCCCAAATTTCCATGGATCAACAAAATTTTTGAACAGTTTTGAAAATTTTCAAAACAAAATAACCTTCCATGAGTCTATGATATCAGAAAGTAAAACTAAAAGCTAAAATTATAAGGTCCAATATTTGCTATTGTGTAAACTTGAGACCTTATTTTTTGCTTCGAGTGTGTT
TCAATGATTTTATCAATTCACCATTGTATTTCAAGAAAGGTAAATGGCATGTGATTTTATGGTTCTGGTCTAGTTCCATGTTAGCATTTTTGCATGGCTTTAACAGTTCTTATATCAGTCC
>TRINITY_DN44524_c0_g3_i3 from sample A7 / Example unspliced isoform:GCCAGGGGGGGCAGAGGTGAAAGGGCAATGAATCAATAGATGCCTTTCTTTGTATTCCGGGAGCGGAAGATATTTAAACCCCAACTAAGTCTGTCCGTCCAAAACAACCAAGCAGATCGGAGGCAGAGCTTGGCTATGGCGTCGGAGAAGAAGAGAGGTTTAACAGACAAAGTCTTTTCCGAGTTGCAGCCCCCTCTATC
AGAGGCCACTCTGAAGGTGTTGGAGGATGGCGGCTTCCATTACTGTACGCCTGTACAGGCCGCCACCATCCCTCTGTTATGCTCTTTCAAGGACGTCGCGGTCGATGCTGCCACTGGCTCTGGGAAGACGCTCGCGTTCGTTGTTCCGCTCGTCGAAATTCTCAGGCGCCTCACCGACCCTCTCAAGTCTCACGAGGTTG
CAGGGATCATAATTTCTCCAACAAGAGAATTGGCATCCCAAATATACCATGTGATAGAGCCTTTTGTTTCTACTCTTCCCAATCTCAGATGCATGCTTGTCGTTGGTGGAACAGATGTGGCAACAGATGTAAAGAAACTAAAGGAGGACGGGGTGAACATAATTGTAGGTACACCTGGGCGCTTAGATGATATTATGGAG
CGAATAAACATTCTAGACTTTCGGCGCCTTGAGGTTCTTATTTTAGATGAGGCAGATAGGCTCTTGGATATGGGTTTTCAGAGACAGCTGTCATCCATTATAGTCCGTTTACCAAAGCAACGACGAACAGGCCTTTTTTCTGCTACCCAAACTGAGGCAGTTGAAGAGCTTTCAAGGGCTGGGCTTAGGAACCCAGTCAG
GGTTGAAGTTAGAGTAGAAGCAAAGTCTAAGAGTCAATCAGCCACTATGACTGATATGGCTTGCTCGAGGACACCTGAAGGGCTTCACATTGAGTATTTAAAATGTGAGGCAGATGAAAAGCCTTCACAACTTGTGCATTTCTTGTCGGAACACAATTCAAACAAAATTATTGTATACTACATGACATGTGCCTCTGTTG
ATTATTGGGGAGCTGTACTACCGCAACTTGAAGTTCTTAAAGGATGTCCTCTGGTTGCTCTTCATGGGAGGATGAAGCAGTCTATGAGGGAGAAAGCATTACAGTCTTTCACAGGACTTACTGCTGGATTTCTTCTATGCACTGACGTGGCAGCAAGGGGTCTTGATATTCCTGATGTTGACTGGATTGTGCAGTATGAT
CCTCCACAAGACCCTAATGTATTTGTACATAGGGTTGGGAGAACAGCACGCATGGGAAGATCTGGGAATGCACTTGCATTCCTCCTACCTAAGGAAGATGCTTATGTGGAGTTTTTACGTATTCGCAAGATCCCTCTTCAAGAGAAAAAATCTTCAGTGACTACTACTGACATTATTCCACAGATACGTGCAGCTGCGAA
GGAGGATCGAGATGTAATGGAGAAGGGATTGAAGGCTTTTGTGTCATTTATTCGTGCATACAAAGAGCACCATTGTTCCTATATCTTCAGGTGGAAAGAATTGGAGGTAGGGAAGTTAGCAATGGGCTGTGGTCTACTGCAGCTTCCATCTATGCCTGAGCTTAAGCGGCGTACTTTATCAACAGATGGTTTTGTGCCTG
TTGAAGGCATTGATCTGGGAGCAATCAAATACAAAGATAAAGCTCGTGAGAAACAACGTCAAAAGAACTTGGCAAAGAAACAACAAACAAGAGCTTTTCATGCAGATAAAGTAGAACGGCATAAGGTTGTGAGCAATGATGGTGGAGGGAAGAGATGCAGCAGACAGCGACGTGCTGTACAAGCCATTGAAGATGAGGAG
GAAATGGAACGGGATTATCATCTGCTTAAAAAGTTAAAGAAAGGAGTTATTAGTGAAAGAGAGTTTGCAAGAGCAACatatactgaggattgtttagatgaggatgaggatgaggatggggatgagcatggagatgatgatctatctgtgccttcaactccaactggtcagattcatgaaccatcctcaaatcttccttt
gcaagtccagattatgaaggaaaacagtcatcaaagctcaaaacattggccttcgcataaatcgggaagaaagaaacaatccatgtctgtaaagacaagtgcaattgccaaaattggtaaacaccatttgaaaggttccagtaataggtataagttgaaacagacaaagggatcaaagaagagagggcagagtaggagca
aaagttagattactttgcttccgtctttcattatggtagagttactaacttactattcatatctatttctctgaaaacttgttatctccttatgaatgacttttatgtaattattgcttcgatgtcttgtaaaaggtgacaaactagaacATTCCAAAGGCCAAAGTTCAGAATATTGACTGTTAGGTTCCAGGAATCTT
GTGGTCTTTTATCTTTTGTATTTTTCTATGTTGCACAAGTTTCCAGAATGGGGGGATGGGGTTTACATGGGTATGGGTTTCCAGAACGGCTAGAAGTTTCCCCCAAATTTCCATGGATCAACAAAATTTTTGAACAGTTTTGAAAATTTTCAAAACAAAATAACCTTCCATGAGTCTATGATATCAGAAAGTAAAACTAA
AAGCTAAAATTATAAGGTCCAATATTTGCTATTGTGTAAACTTGAGACCTTATTTTTTGCTTCGAGTGTGTTTCAATGATTTTATCAATTCACCATTGTATTTCAAGAAAGGTAAATGGCATGTGATTTTATGGTTCTGGTCTAGTTCCATGTTAGCATTTTTGCATGGCTTTAACAGTTCTTATATCAGTCC
Intron 3 GTAACCTATG ... AAATTTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 71.79 | 11 | 3 | 28 |
| A2 | 65.38 | 9 | 2 | 17 |
| A3 | 70 | 9 | 5 | 21 |
| A4 | 74.19 | 8 | 3 | 23 |
| A5 | 69.44 | 11 | 0 | 25 |
| A6 | 80 | 1 | 1 | 4 |
| A7 | 55.56 | 20 | 0 | 25 |
| A8 | 50 | 6 | 0 | 6 |
| A9 | 61.9 | 16 | 5 | 26 |
| A10 | 56.25 | 14 | 3 | 18 |
>TRINITY_DN100930_c0_g2_i5 from sample A4 / Example spliced isoformTAGAGACTTCGAAATTTGACGGTCATTGAGAGACTTGGCTATGGCGTCGGAGAAGAAGAGAGGTTTAACAGACAAAGTCTTTTCCGAGTTGCAGCCCCCTCTATCAGAGGCCACTCTGAAGGTGTTGGAGGATGGCGGCTTCCATTACTGTACGCCTGTACAGGCCGCCACCATCCCTCTGTTATGCTCTTTCAAGGACG
TCGCGGTCGATGCTGCCACTGGCTCTGGGAAGACGCTCGCGTTCGTTGTTCCGCTCGTCGAAATTCTCAGGCGCCTCACCGACCCTCTCAAGTCTCACGAGGTTGCAGGGATCATAATTTCTCCAACAAGAGAATTGGCATCCCAAATATACCATGTGATAGAGCCTTTTGTTTCTACTCTTCCCAATCTCAGATGCATG
CTTGTCGTTGGTGGAACAGATGTGGCAACAGATGTAAAGAAACTAAAGGAGGACGGGGTGAACATAATTGTAGGTACACCTGGGCGCTTAGATGATATTATGGAGCGAATAAACATTCTAGACTTTCGGCGCCTTGAGGTTCTTATTTTAGATGAGGCAGATAGGCTCTTGGATATGGGTTTTCAGAGACAGCTGTCATC
CATTATAGTCCGTTTACCAAAGCAACGACGAACAGGCCTTTTTTCTGCTACCCAAACTGAGGCAGTTGAAGAGCTTTCAAGGGCTGGGCTTAGGAACCCAGTCAGGGTTGAAGTTAGAGTAGAAGCAAAGTCTAAGAGTCAATCAGCCACTATGACTGATATGGCTTGCTCGAGGACACCTGAAGGGCTTCACATTGAGT
ATTTAAAATGTGAGGCAGATGAAAAGCCTTCACAACTTGTGCATTTCTTGTCGGAACACAATTCAAACAAAATTATTGTATACTACATGACATGTGCCTCTGTTGATTATTGGGGAGCTGTACTACCGCAACTTGAAGTTCTTAAAGGATGTCCTCTGGTTGCTCTTCATGGGAGGATGAAGCAGGCATGTTGCTTGGAT
TCTTCTAATACTGATTTTCTCTTGGCATGTAGTTGTGATGTCATGTTACATTCTATGGTTAT
>TRINITY_DN100930_c0_g2_i4 from sample A4 / Example unspliced isoform:TAGAGACTTCGAAATTTGACGGTCATTGAGAGAgtaacctatgaaaaaatatactataaaactctaataataagatttgctcagtagctactagtatttaagccttgtttggttttttcactgcgatcctttaaaatctgcgtcatgcttttgtgcaaagtctaaaaccccgagtgtttccgcgaaattttcagCTTGGC
TATGGCGTCGGAGAAGAAGAGAGGTTTAACAGACAAAGTCTTTTCCGAGTTGCAGCCCCCTCTATCAGAGGCCACTCTGAAGGTGTTGGAGGATGGCGGCTTCCATTACTGTACGCCTGTACAGGCCGCCACCATCCCTCTGTTATGCTCTTTCAAGGACGTCGCGGTCGATGCTGCCACTGGCTCTGGGAAGACGCTCG
CGTTCGTTGTTCCGCTCGTCGAAATTCTCAGGCGCCTCACCGACCCTCTCAAGTCTCACGAGGTTGCAGGGATCATAATTTCTCCAACAAGAGAATTGGCATCCCAAATATACCATGTGATAGAGCCTTTTGTTTCTACTCTTCCCAATCTCAGATGCATGCTTGTCGTTGGTGGAACAGATGTGGCAACAGATGTAAAG
AAACTAAAGGAGGACGGGGTGAACATAATTGTAGGTACACCTGGGCGCTTAGATGATATTATGGAGCGAATAAACATTCTAGACTTTCGGCGCCTTGAGGTTCTTATTTTAGATGAGGCAGATAGGCTCTTGGATATGGGTTTTCAGAGACAGCTGTCATCCATTATAGTCCGTTTACCAAAGCAACGACGAACAGGCCT
TTTTTCTGCTACCCAAACTGAGGCAGTTGAAGAGCTTTCAAGGGCTGGGCTTAGGAACCCAGTCAGGGTTGAAGTTAGAGTAGAAGCAAAGTCTAAGAGTCAATCAGCCACTATGACTGATATGGCTTGCTCGAGGACACCTGAAGGGCTTCACATTGAGTATTTAAAATGTGAGGCAGATGAAAAGCCTTCACAACTTG
TGCATTTCTTGTCGGAACACAATTCAAACAAAATTATTGTATACTACATGACATGTGCCTCTGTTGATTATTGGGGAGCTGTACTACCGCAACTTGAAGTTCTTAAAGGATGTCCTCTGGTTGCTCTTCATGGGAGGATGAAGCAGGCATGTTGCTTGGATTCTTCTAATACTGATTTTCTCTTGGCATGTAGTTGTGAT
GTCATGTTACATTCTATGGTTAT
Intron 4 GTAGAGACTT ... AAATTTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 60.87 | 18 | 6 | 28 |
| A2 | 45.95 | 20 | 5 | 17 |
| A3 | 56.76 | 16 | 5 | 21 |
| A4 | 56.1 | 18 | 1 | 23 |
| A5 | 65.79 | 13 | 0 | 25 |
| A6 | 66.67 | 2 | 1 | 4 |
| A7 | 49.02 | 26 | 2.3 | 25 |
| A8 | 40 | 9 | 0 | 6 |
| A9 | 42.62 | 35 | 1 | 26 |
| A10 | 43.9 | 23 | 1 | 18 |
>TRINITY_DN117780_c0_g1_i2 from sample A1 / Example spliced isoformGGCCCTCCTATAAATTAGTGGGGCAGAGGTGAAAGGGCAATGAATCAATAGATGCCTTTCTTTGTATTCCGGGAGCGGAAGATATTTAAACCCCAGCTAAGTCTGTCCGTCCAAAACAACCAAGCAGATCGGAGGCAGAGCTTGGCTATGGCGTCGGAGAAGAAGAGAGGTTTAACAGACAAAGTCTTTTCCGAGTTGCA
GCCCCCTCTATCAGAGGCCACTCTGAAGGTGTTGGAGGATGGCGGCTTCCATTACTGTACGCCTGTACAGGCCGCCACCATCCCTCTGTTATGCTCTTTCAAGGACGTCGCGGTCGATGCTGCCACTGGCTCTGGGAAGACGCTCGCGTTCGTTGTTCCGCTCGTCGAAATTCTCAGGCGCCTCACCGACCCTCTCAAGT
CTCACGAGGTTGCAGGGATCATAATTTCTCCAACAAGAGAATTGGCATCCCAAATATACCATGTGATAGAGCCTTTTGTTTCTACTCTTCCCAATCTCAGATGCATGCTTGTCGTTGGTGGAACAGATGTGGCAACAGATGTAAAGAAACTAAAGGAGGACGGGGTGAACATAATTGTAGGTACACCTGGGCGCTTAGAT
GATATTATGGAGCGAATAAACATTCTAGACTTTCGGCGCCTTGAGGTTCTTATTTTAGATGAGGCAGATAGGCTCTTGGATATGGGTTTTCAGAGACAGCTGTCATCCATTATAGTCCGTTTACCAAAGCAACGACGAACAGGCCTTTTTTCTGCTACCCAAACTGAGGCAGTTGAAGAGCTTTCAAGGGCTGGGCTTAG
GAACCCAGTCAGGGTTGAAGTTAGAGTAGAAGCAAAGTCTAAGAGTCAATCAGCCACTATGACTGATATGGCTTGCTCGAGGACACCTGAAGGGCTTCACATTGAGTGCATTGTTTGTTTTGCAGTATTTAAAATGTG
>TRINITY_DN117780_c0_g1_i4 from sample A1 / Example unspliced isoform:GGCCCTCCTATAAATTAGTGGGGCAGAGGTGAAAGGGCAATGAATCAATAGATGCCTTTCTTTGTATTCCGGGAGCGGAAGATATTTAAACCCCAGCTAAGTCTGTCCGTCCAAAACAACCAAGCAGATCGGAGGCAGAGgtagagacttcgaaatttgacggtcattgagagagtaacctatgaaaaaatatactataa
aactctaataataagatttgctcagtagctactagtatttaagccttgtttggttttttcactgcgatcctttaaaatctgcgtcatgcttttgtgcaaagtctaaaaccccgagtgtttccgcgaaattttcagCTTGGCTATGGCGTCGGAGAAGAAGAGAGGTTTAACAGACAAAGTCTTTTCCGAGTTGCAGCCCC
CTCTATCAGAGGCCACTCTGAAGGTGTTGGAGGATGGCGGCTTCCATTACTGTACGCCTGTACAGGCCGCCACCATCCCTCTGTTATGCTCTTTCAAGGACGTCGCGGTCGATGCTGCCACTGGCTCTGGGAAGACGCTCGCGTTCGTTGTTCCGCTCGTCGAAATTCTCAGGCGCCTCACCGACCCTCTCAAGTCTCAC
GAGGTCTTATCCTTTCCTCCTTGGCGTTTCTTTTCTTTATTATTCCAGG