sp|Q8LDS5|THO7A_ARATH ----> THO complex subunit 7A

Intron 1 GTGATTTCTG ... TATTGCAAAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	68.75	10	24	20
A2	51.52	16	14	20
A3	71.43	5	11	14
A4	66.67	11	27	17
A5	58.33	10	16	12
A6	74.84	20	61	58
A7	68.52	17	30	44
A8	68.42	12	22	30
A9	69.34	21	59	36
A10	65.67	23	39	49

>TRINITY_DN38045_c0_g1_i7 from sample A6 / Example spliced isoform

AAATGAATGTCGTGTCTCAACAGTGACGTAAAGCTTTACGCTTGTTTTTTGTGGAAGCCTTTCCAGAATTTTGTTTAATCCCTCTCCAGCCTCTTCTAGGGCTGCTGCCTTTGAACTTTTTACGCATATATTGCTCTTGCGTCGTAGGGCGTTTTCACTCATCTGTAATAGAAATTGCTTCTCTATCCTGGTGCCGCGCG
GATTGCCATAGGGAGGTTTCCTTCAAGCATCTATCGGGACTTCCGGGGCTTTCAAACGCCACTGTTTTTTTTCTGTTTTATTAGGCTTATCTCTCTTTACGCGCGAGGGGGCGAAAGCATGGCGGGGGGCAATTTCATGCACAGAGTACTCTCCTACGTAGTTAACGAACTCGTTGTAGATCGCCTCGCCAACAGTCGTT
CATTTCAGAGATTTGCAGTGAAATCATCAAAGGCTTTCGAAGAAATTTCCCAGAGAGCTCTTCAGCAAAGAGAGAAATTTTTTGAACAACTTGAGGAAGCTTCGAAAACTTTTAAGGCTGAGACTGAGAAAGGCTCCAGGGACCAGAATAGGAGATGAATTTTGCTGTATGGGAAGCACTGATATTCAAATATTAGCTTG
GTTTCAGCTTTTTGTCCTCGTGACGATTTAAGAGTTTTAACATGTTTTGTTATTTAAAATCCAGATTTTGAAGTCTTTAGCTACTCGTCAGGATGGATTTTTATTGTTTATTCTCTGATGTATATGGCTATTTTCTGATAGGAAGCGTACTTATGTTTCATTCCTACTGGGATTCATGAAAAATATTTTTAACAATGCAA
AGTATGTAAAACAGGTATTATTTTGTTTATTTTGAAGCTTACTAAGTTGTATTCATTAGCTACTCATCTCAAGGCATTTTCCAAATCAGTTGGCCAATCTCCATGTGTCGTTAATAAA

>TRINITY_DN38045_c0_g1_i6 from sample A6 / Example unspliced isoform:

AAATGAATGTCGTGTCTCAACAGTGACGTAAAGCTTTACGCTTGTTTTTTGTGGAAGCCTTTCCAGAATTTTGTTTAATCCCTCTCCAGCCTCTTCTAGGGCTGCTGCCTTTGAACTTTTTACGCATATATTGCTCTTGCGTCGTAGGGCGTTTTCACTCATCTGTAATAGAAATTGCTTCTCTATCCTGGTGCCGCGCG
GATTGCCATAGGGAGGTTTCCTTCAAGCATCTATCGGGACTTCCGGGGCTTTCAAACGCCACTGTTTTTTTTCTGTTTTATTAGGCTTATCTCTCTTTACGgtgatttctggatgtaactggtattttgtctcttaatacaagttatatcattttttcttttggaaaaaaagaagctttacgcttgtttcgtccgtctat
tgcaaagCGCGAGGGGGCGAAAGCATGGCGGGGGGCAATTTCATGCACAGAGTACTCTCCTACGTAGTTAACGAACTCGTTGTAGATCGCCTCGCCAACAGTCGTTCATTTCAGAGATTTGCAGTGAAATCATCAAAGGCTTTCGAAGAAATTTCCCAGAGAGCTCTTCAGCAAAGAGAGAAATTTTTTGAACAACTTGA
GGAAGCTTCGAAAACTTTTAAGGCTGAGACTGAGAAAGGCTCCAGGGACCAGAATAGGAGATGAATTTTGCTGTATGGGAAGCACTGATATTCAAATATTAGCTTGGTTTCAGCTTTTTGTCCTCGTGACGATTTAAGAGTTTTAACATGTTTTGTTATTTAAAATCCAGATTTTGAAGTCTTTAGCTACTCGTCAGGAT
GGATTTTTATTGTTTATTCTCTGATGTATATGGCTATTTTCTGATAGGAAGCGTACTTATGTTTCATTCCTACTGGGATTCATGAAAAATATTTTTAACAATGCAAAGTATGTAAAACAGGTATTATTTTGTTTATTTTGAAGCTTACTAAGTTGTATTCATTAGCTACTCATCTCAAGGCATTTTCCAAATCAGTTGGC
CAATCTCCATGTGTCGTTAATAAA

Intron 2 GTATTTTGTC ... TATTGCAAAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	69.7	10	26	20
A2	58.06	13	16	20
A3	81.82	3	13	14
A4	74.55	7	24	17
A5	63.16	7	12	12
A6	77.91	18	69	58
A7	76.58	13	41	44
A8	74.36	10	28	30
A9	78.15	13	57	36
A10	76.07	14	40	49

>TRINITY_DN40757_c0_g3_i7 from sample A8 / Example spliced isoform

GAAATGAATGTCGTGTCTCAACAGTGACGTAAAGCTTTACGCTTGTTTTTTGTGGAAGCCTTTCCAGAATTTTGTTTAATCCCTCTCCAGCCTCTTCTAGGGCTGCTGCCTTTGAACTTTTTACGCATATATTGCTCTTGCGTCGTAGGGCGTTTTCACTCATCTGTAATAGAAATTGCTTCTCTATCCTGGTGCCGCGC
GGATTGCCATAGGGAGGTTTCCTTCAAGCATCTATCGGGACTTCCGGGGCTTTCAAACGCCACTGTTTTTTTTCTGTTTTATTAGGCTTATCTCTCTTTACGGTGATTTCTGGATGTAACTGCGCGAGGGGGCGAAAGCATGGCGGGGGGCAATTTCATGCACAGAGTACTCTCCTACGTAGTTAACGAACTCGTTGTAG
ATCGCCTCGCCAACAGTCGTTCATTTCAGAGATTTGCAGTGAAATCATCAAAGGCTTTCGAAGAAATTTCCCAGAGAGCTCTTCAGCAAAGAGAGAAATTTTTTGAACAACTTGAGGAAGCTTCGAAAACTTTTAAGGCTGAGACTGAGAAAGGCTCCAGGGACCAGAATAGGAGATGAATTTTGCTGTATGGGAAGCAC
TGATATTCAAATATTAGCTTGGTTTCAGCTTTTTGTCCTCGTGACGATTTAAGAGTTTTAACATGTTTTGTTATTTAAAATCCAGATTTTGAAGTCTTTAGCTACTCGTCAGGATGGATTTTTATTGTTTATTCTCTGATGTATATGGCTATTTTCTGATAGGAAGCGTACTTATGTTTCATTCCTACTGGGATTCATGA
AAAATATTTTTAACAATGCAAAGTATGTAAAACAGGTATTATTTTGTTTATTTTGAAGCTTACTAAGTTGTATTCATTAGCTACTCATCTCAAGGCATTTTCCAAATCAGTTGGCCAATCTCCATGTGTCGTTAATAAATTGGTAACTTGAATTAACATGCTTAC

>TRINITY_DN40757_c0_g3_i5 from sample A8 / Example unspliced isoform:

GAAATGAATGTCGTGTCTCAACAGTGACGTAAAGCTTTACGCTTGTTTTTTGTGGAAGCCTTTCCAGAATTTTGTTTAATCCCTCTCCAGCCTCTTCTAGGGCTGCTGCCTTTGAACTTTTTACGCATATATTGCTCTTGCGTCGTAGGGCGTTTTCACTCATCTGTAATAGAAATTGCTTCTCTATCCTGGTGCCGCGC
GGATTGCCATAGGGAGGTTTCCTTCAAGCATCTATCGGGACTTCCGGGGCTTTCAAACGCCACTGTTTTTTTTCTGTTTTATTAGGCTTATCTCTCTTTACGGTGATTTCTGGATGTAACTGgtattttgtctcttaatacaagttatatcattttttcttttggaaaaaaagaagctttacgcttgtttcgtccgtcta
ttgcaaagCGCGAGGGGGCGAAAGCATGGCGGGGGGCAATTTCATGCACAGAGTACTCTCCTACGTAGTTAACGAACTCGTTGTAGATCGCCTCGCCAACAGTCGTTCATTTCAGAGATTTGCAGTGAAATCATCAAAGGCTTTCGAAGAAATTTCCCAGAGAGCTCTTCAGCAAAGAGAGAAATTTTTTGAACAACTTG
AGGAAGCTTCGAAAACTTTTAAGGCTGAGTAAAATCCTTGCTCATTTTTCATTGCAATGATCACTATTTCTGACAAAATTCAATACAAGCCCCTTTATTTGGATAGAGTATAAATGATAGTTTACTGTGGTTTTGTCAGTGAAACGCTCACTGCAGTTCCATGATTATTTGTGCCAGTGAATTTGGCTGATTCCAGTTTA
GGCTTTCCATGTTTCTTTTATGTGAACAATACACATGATCTATTCCTCGTTAGAGGTTGAAAACAATATTGTTTATTATTATATTTATATTCCAAGCAGACTTGATGTGTATAAGATGGACGAGCTAGGAAAGCTGCCAGAATTGTAGCCATAGTTCAGGGCCACCTTATCAACCTGTTTCCTGTGTTCCTTGAACTAAT
ATTAATTGCAAATATCCAAATAGCTATATGAAACACTGATTTCAGAATATGACCAACTTTATTGAACTAAGCTTCTAATGAAGGTTTCTTTTAAGTGTGTGAGTTTCCCAAAAACCAAC