NA ----> NA

Intron 1 GTATGGATTT ... TGTTGTGTAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	37.37	62	7	37
A2	35.94	41	5	23
A3	63.33	22	11	38
A4	37.78	56	13	34
A5	41.86	25	8	18
A6	0	1	0	0
A7	46.67	8	6	7
A8	66.67	5	2	10
A9	50	2	0	2
A10	-1	0	0	0

>TRINITY_DN125357_c5_g2_i15 from sample A2 / Example spliced isoform

TTTGCTAAGGTAGAGGCAAATAGCGAGTTATACATTTGTTGATATCAACTCATATTGCAGGTTTAGGGATGTTGCATCTTTACTGGTACAATGGGCGAGGAGAAGGCTAAGGAGTAGGAGGTTAAAGGTGGACGATTGTTTATAAACCACGAAAAGGTCGAAGAGAGAGATACATGCTAGCTGGTGAGTAAACATAGAGC
CATATGGTGAGTTCTCTTTGTTGCAGAACTCATGTATTCTCTTCTATGAAATCATCC

>TRINITY_DN125357_c5_g2_i14 from sample A2 / Example unspliced isoform:

AGGAGTAGGAGgtatggatttaatttctaagctaattgaagttaactcatttgttgatgcgccattatattatgtgtttgtttaaaattcaaggcaatgttgtgtagGTTAAAGGTGGACGATTGTTTATAAACCACGAAAAGGTCGAAGAGAGAGATACATGCTAGCTGGTGAGTAAACATAGAGCCATATGGTGAGTT
CTCTTTGTTGCAGAACTCATGTATTCTCTTCTATGAAATCATCC

Intron 2 GTATGTTCCA ... TGGTGTGCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	80.67	10	40	44
A2	69.08	9	16	24.3
A3	81.74	7	27	35.8
A4	61.29	18	20	37
A5	79.74	2	4	11.8
A6	60	1	3	0
A7	38.33	3	1	2.8
A8	100	0	0	2
A9	100	0	0	3
A10	100	0	0	1.8

>TRINITY_DN125357_c5_g2_i23 from sample A2 / Example spliced isoform

TTAAAATTAAAGGCAATGTTGTGCAGGTAAAAGGTGGATGATTGTTGATGAAACCATCAAAATGTGCAAGAGAGAGATACATGCTAGCTGGTGCAGTGAGTGAAGGTGAAGCCTGAGGTGGTTGTCCTTGGCTCACCATGGAAGCATTCGGGGTTTGTAGAGTGGAATTTGTGTTAGTTATTCCCTATGTTGCATGGGTA
CCCGTACCGGGGGGTCGGGTACACGTACCCGTACCGGGTACGCGTACCGGGTACTTGGGTACTTCAATGGTACGTTCC

>TRINITY_DN125357_c5_g2_i11 from sample A2 / Example unspliced isoform:

TTAAAATTAAAGGCAATGTTGTGCAGGTAAAAGGTGGATGATTGTTGATGAAACCATCAAAATGTGCAAGAGAGAGATACATGCTAGCTGGTGCAGTGAGTGAAGGTGAAGCCTGAGGTGgtatgttccatttgtgtttgttaaatcagaggcacctttcattatttgttatttatttaattattgactgcagtgcaatg
aagtggtccactgataaaaactattgatatatatatatataagaataagagagagattgttgacgtagagctaagttctcttttggttcataagatgtacctgtgcataagatcactcataaaattctctcataagatattttgtttgtgtttaatatttataataatattttctagtatctatttaatgcttatcaaaa
ctttggtgtgcagGTTGTCCTTGGCTCACCATGGAAGCATTCGGGGTTTGTAGAGTGGAATTTGTGTTAGTTATTTCTCTTTCTTGTAAATTTTTTTTTATATCGTTTTTTTAGCTTTTGTTATTGCTGTTTTTCCTTTTTCATTGCTATACGTGTTTTTTTTGTTGCATTTTTTAGCATGGCCATGTTACTTTGTTCTT
TGTTGTTTAGTATTTTTTTTATTGCTTGCCTTCTTGCTTGGTATTTATTTACTATGCTTTGGTTTGGTTTTTCGTAGGTTCAATGGGTTGGGTAGTTAAGGCTTTTTTATTCAGGTCCTAACAACCCATATTGTGAGTTTAGGGATGATGCAGATTGCACTTTACAATGGGTGAAGGGGAAGGCCAAGCAAGAGGAAGTA
TGCATGGTTTCATGTTCAGAGGTTGAGACCGAGGGTGAGTTCTACATTTGTTGATATCAATCCATTTTGTAGGTTCAGGGTTGATGCATATCTACAGGTACAATGGGAAATGAGAAGGCTAAGGAGTAGGAGGTATGCATTGTTCTATGATAGTAGAACCTAACCAATTTTTTGTTACATCATTATATCATGTTTTTGTG
GGTTTTGTGTTGATAGATATCTATAAGTACAACGGGCAATGAGAAGGCTAAGGATTGGAGGTATGCATTGTTTTATGCTAGTTGAACCTAATCCATTTTTTTTACATCATTATATTGTGCGTTTGTTTAAATTTAGAGGCAATGCAGTGTAGGTAATGCAAGGTGGATGACTGTCAATGAAAATGATGAAATGTATTTGT
GTGAGAGAGATATGGGATAATCTGTAAACATGGGCGATAAGGTA