sp|Q9ZUZ3|SAU32_ARATH ----> Auxin-responsive protein SAUR32

Intron 1 GTAAATCTCC ... TGTGTTATAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	33.33	1	1	0
A2	100	0	2	0
A3	33.33	1	1	0
A4	100	0	2	0
A5	-1	0	0	0
A6	53.85	3	6	1
A7	78.95	2	15	0
A8	46.15	21	23	13
A9	28.42	34	15	12
A10	28.36	24	11	8

>TRINITY_DN47752_c0_g1_i1 from sample A10 / Example spliced isoform

TTGCTAATGAGAAATTAGGTTACGTTTTTTTTTTTGCTAATCAGAGTGTTTCCACGCGGTGGGGAAGATAAATCCATCGGTCATCCCAGGCCTGCAACTTCTTTCGATCATCCTCGGTGGACCTGCAATCCCTCTATTCACTTCTTGCTCTTTCATTTCAAAGCAGACGCAGATTGGTCAGTAGATCAGGAGATTTAACG
CCATGAAAGTCTCATCGTCGAGATTGCTACATTGATTTGCTCCGAAGCAAGGTTTCACATTCCTGAAAACGAAAGAGGTCGAGTAGAGCGGACGCAGATTGGTCGATAGATCAGGAGATTGAACCCTGTGAAAGTCTCGTCGCCGAGATTGCTACATTGATTTGCTCTGAAGCAGGGTTTCACATTCCTGAAAATGAAAG
AGGCTAAGCAGGAGAAGAAGAAGGTGGCAAGGATTCTATATCAAGCAATGGCAATCTCGACGATGGAAACATGAATAATCTCCACGATGAATCTTTCTTTAGGGAAAGGTGGCAAGGATTATATATTAGGCAATGGCAATCTCGACGATGGCAACATGAATAATCTCCACGATGAAGCTTTCTTTAGGGCAAGGATTCCA
TATCAGGCAAGGTTTGAGAATTGGTCATTAATCCATCAATCAAGTGGAAAACCAATGGCGGAGGAAGCTGGCGAACTTTGCCAAAAGCTGGAGGTTCATACATTCCTAAATTCTTTGTTGTAAATCCCATATTTTTTTTTCAATGAAAATCGAGAAATTGTAGATAAAGGTCTCTGTCCATC

>TRINITY_DN47752_c0_g1_i6 from sample A10 / Example unspliced isoform:

TTGCTAATGAGAAATTAGGTTACGTTTTTTTTTTTGCTAATCAGAGTGTTTCCACGCGGTGGGGAAGATAAATCCATCGGTCATCCCAGGCCTGCAACTTCTTTCGATCATCCTCGGTGGACCTGCAATCCCTCTATTCACTTCTTGCTCTTTCATTTCAAAGCAGACGCAGATTGGTCAGTAGATCAGGAGATTTAACG
CCATGAAAGTCTCATCGTCGAGATTGCTACATTGATTTGCTCCGAAGCAAGGTTTCACATTCCTGAAAACGAAAGAGGTCGAGTAGAGCGGACGCAGATTGGTCGATAGATCAGGAGATTGAACCCTGTGAAAGTCTCGTCGCCGAGATTGCTACATTGATTTGCTCTGAAGCAGGGTTTCACATTCCTGAAAATGAAAG
AGGCTAAGCAGGAGAAGAAGAAGGTGGCAAGGATTCTATATCAAGCAATGGCAATCTCGACGATGGAAACATGAATAATCTCCACGATGAATCTTTCTTTAGGGAAAGGTGGCAAGGATTATATATTAGGCAATGGCAATCTCGACGATGGCAACATGAATAATCTCCACGATGAAGCTTTCTTTAGGGCAAGGATTCCA
TATCAGGCAAGgtaaatctccaagatgcgaggcattatatgcccttcagagccttaatattcttgtatataatatatgtattttgaaacgtaattagaccctttaatattcttatatataatatatatgtattttgaagcgtaattagagattccatgagcaattgcaatgtgaaagctttccactatatttcagtgctc
gtgcattttgggctcatgcattttgggataatattaactattgtgtatattacattagtcatggggagagcaccctgctgtgaaaaaatagggctaaacggaggcccctggactcatcaagaggatctccgcctcatagaatacattaaaaccaatggcagaggaagctggcggacttttccaaaagctgcaagttcata
cattcctaaattctttgttgtagatcccacatttcctttttttcaatgaaaatcgggaaattgtagataaaggtctatgtccatccttatttaattatctttattcttatgtgttatagGTTTGAGAATTGGTCATTAATCCATCAATCAAGTGGAAAACCAATGGCGGAGGAAGCTGGCGAACTTTGCCAAAAGCTGGA
GGTTCATACATTCCTAAATTCTTTGTTGTAAATCCCATATTTTTTTTTCAATGAAAATCGAGAAATTGTAGATAAAGGTCTCTGTCCATC

Intron 2 GTAAATCTCG ... ATTACATTAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	-1	0	0	0
A2	100	0	0	5
A3	100	0	2	2
A4	55.56	2	5	0
A5	50	3	5	1
A6	67.86	9	17	21
A7	63.64	8	18	10
A8	58.54	17	32	16
A9	57.58	7	12	7
A10	50.88	14	13	16

>TRINITY_DN47752_c0_g1_i3 from sample A10 / Example spliced isoform

GCCGGACATTATGCCAGCGGTAACCCACCTTGGCTGTAACCTACCTCCGGGCACCCATGTGCAGGCCTCACTGCATGCAGGCCACACGTACTCCCACGTGAAGGTTCTTTGTCCATACTGAGATCTTCTTAACAAAGAGGCAGATCTTGGTTCTTTGTCCATACTGTAGGCACGAAACAATGTCTCCGAGGAGGTCTTTC
ACTTGATGCAGGAGAAGACAAAGGTGGCAAGGCTTTTATATTAGGCAATGGCAATCTAGACGATGGCAACACGAATAATCTCGAGGATGAATCTTTCTTTAGGGCAAGGATTCCATATCAGGCCAGTCATGGGGAGAGCACCCTGCTGTGAAAAAATAGGGCTAAACAGAGGCTCCTGGGCTCATCAAGAGGATCTCCGC
CTCATACAATACATTAAAACCAATGGCGGAGGAAGCTGGCGAACTTTGCCAAAAGCTGGAGGTTCATACATTCCTAAATTCTTTGTTGTAAATCCCATATTTTTTTTTCAATGAAAATCGAGAAATTGTAGATAAAGGTCTCTGTCCATC

>TRINITY_DN47752_c0_g1_i12 from sample A10 / Example unspliced isoform:

TGCAGGCCTCACTGCCACGCGTACTCCCGCATGAAGGTTCTTTGTCCATACTGAGATCTTCTTAACAAAGAGGCAGATCTTGGTTCTTTGTCCATACTGTAGGCACGAAACAATGTCTCCGAGGAGGTCTTTCACTTGATGCAGGAGAAGACAAAGGTGGCAAGGCTTTTATATTAGGCAATGGCAATCTAGACGATGGC
AACACGAATAATCTCGAGGATGAATCTTTCTTTAGGGCAAGGATTCCATATCAGGCCAGgtaaatctcgaggatgcgaggcattatatgcccttcagagccttaatattcttgtatataatatatgtattttgaagcgtaattagagattccatgagcaattgcagtgtgaaagcttgccactatatttcagtgctcatg
cattttgggctcatgcattttgggataatattaactattgtgtatattacattagTCATGGGGAGAGCACCCTGCTGTGAAAAAATAGGGCTAAACAGAGGCTCCTGGGCTCATCAAGAGGATCTCCGCCTCATACAATACATTAAAACCAATGGCGGAGGAAGCTGGCGAACTTTGCCAAAAGCTGGAGGTTCATACAT
TCCTAAATTCTTTGTTGTAAATCCCATATTTTTTTTTCAATGAAAATCGAGAAATTGTAGATAAAGGTCTCTGTCCATC