sp|V9M398|RUN1_VITRO ----> Disease resistance protein RUN1
Intron 1 GTGATGTCTC ... ATGGTATCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 61.76 | 13 | 32 | 10 |
| A2 | 63.22 | 16 | 23 | 32 |
| A3 | 53.33 | 14 | 13 | 19 |
| A4 | 52.94 | 20 | 19 | 26 |
| A5 | 80 | 3 | 13 | 11 |
| A6 | 14.29 | 6 | 1 | 1 |
| A7 | 0 | 8 | 0 | 0 |
| A8 | 27.27 | 4 | 2 | 1 |
| A9 | 18.18 | 9 | 3 | 1 |
| A10 | 0 | 7 | 0 | 0 |
>TRINITY_DN106268_c9_g1_i9 from sample A4 / Example spliced isoformTATGTAATAAATTGGTTATTTCAGTTGGAGTAAGGGAGCAAAGATAGGATGGCACAGTGACAATAATAGACCCTATCTCAAGCAACGGCATTATGCGGTATGTTTCTTATTGTTTTGCATCTTGTTAAACTATAGATTACCAACATGCAGAGGTGATCTTTTGTGGACGAACCTAATTATATGCTTCTTCAACAGTTGAA
ATGTAAACTGTGTAGTCCTAGATCATCAATCATTGGCCATTAGATGTTTTAACACCCTTTATGATTTTGGTTTTCAAGAAAATCTTTTAAAATGAGATTATTTTTGGAAACTTCTAGGGTGAAGTCTTAGTGTTTAATACTAAAAAATGTAGAGATTGTTTTCTTTTGAAAATGCATCATATATTAAATTTCTGCACAAA
ATGTAGTACATGAAATCTTACACATAAATGATCTAGGCCGAGATTATAAAGGTTATCCCACTCTACATAGGCAAGGGATGCTATCATATTTTCCTTAGCCCCAATCTTACGAGAGGATGCCCTTACGGAAAATGCCAGTTTTGGCTGAAGTTTGCACTACCAACTCTGCACTGAGTGTTGTAGTCTTTCCCAAATGAAAA
GGAGAAGCATCCCCATTTGAATGTACCTTGAGTGTAGAGACAACAATGCAGAGATTGTAACTTGAAATATGTTGTAAATGTACAAGTTGAGTAATTGCTAAGTTGATATAAATTGTTTGCACAATCATTCATTTCTCGTATTATTTTTCTATTGCAAAGCTGTTTCTCAGTACTTTTGTTTTGTATCTGCTGGCATCGAT
CTACAATTATGTTGATAATTCTGGTTATGGTTTGTTTATTAGGCCATGTCTACAAGTACAAGGTGTGCTTTAAATATGCAACGTCTTCTTATGAGCCACGGTAGGGAAATTTTAAGAAGTGGGTGAATACCTAGGGACTGCACAGATCTGTGATGGACCGATGAATTACTTTTCGATACAAACTAAGAAACCGAAAGGAC
TTTCAAGGCTGTATGCTATTTAAACAACTACGGTGAGGACTTTAAAGGTGGTCTGTTCCACTTTCAAGAAGGCGAACCTAATACTATTGTTCCAAAG
>TRINITY_DN106268_c9_g1_i7 from sample A4 / Example unspliced isoform:TATGTAATAAATTGGTTATTTCAGTTGGAGTAAGGGAGCAAAGATAGGATGGCACAGTGACAATAATAGACCCTATCTCAAGCAACGGCATTATGCGGTATGTTTCTTATTGTTTTGCATCTTGTTAAACTATAGATTACCAACATGCAGAGGTGATCTTTTGTGGACGAACCTAATTATATGCTTCTTCAACAGTTGAA
ATGTAAACTGTGTAGTCCTAGATCATCAATCATTGGCCATTAGATGTTTTAACACCCTTTATGATTTTGGTTTTCAAGAAAATCTTTTAAAATGAGATTATTTTTGGAAACTTCTAGGGTGAAGTCTTAGTGTTTAATACTAAAAAATGTAGAGATTGTTTTCTTTTGAAAATGCATCATATATTAAATTTCTGCACAAA
ATGTAGTACATGAAATCTTACACATAAATGATCTAGGCCGAGATTATAAAGGTTATCCCACTCTACATAGGCAAGGGATGCTATCATATTTTCCTTAGCCCCAATCTTACGAGAGGATGCCCTTACGGAAAATGCCAGTTTTGGCTGAAGTTTGCACTACCAACTCTGCACTGAGTGTTGTAGTCTTTCCCAAATGAAAA
GGAGAAGCATCCCCATTTGAATGTACCTTGAGTGTAGAGACAACAATGCAGAGATTGTAACTTGAAATATGTTGTAAATGTACAAGTTGAGTAATTGCTAAGTTGATATAAATTGTTTGCACAATCATTCATTTCTCGTATTATTTTTCTATTGCAAAGCTGTTTCTCAGTACTTTTGTTTTGTATCTGCTGGCATCGAT
CTACAATTATGTTGATAATTCTGGTTATGGTTTGTTTATTAGGCCATGTCTACAAGTACAAGGTGTGCTTTAAATATGCAACGTCTTCTTATGgtgatgtctctcctttgttagagtttataatggtcatctaaattgtagatttgggcataataataaagtcactgtatgacttagtcaactttatacttatgttgtac
taatgactttacatttaagtcattttagtgtttatgcatctaggtttatgtcattcctttgatataaagagatggttgctctctttatttaacatccaagaagtatctctcattcaagttctctcttgtgttcttggtttctttgtgtgttctgcttttgtaatatggtatcagAGCCACGGTAGGGAAATTTTAAGAAG
TGGGTGAATACCTAGGGACTGCACAGATCTGTGATGGACCGATGAATTACTTTTCGATACAAACTAAGAAACCGAAAGGACTTTCAAGGTTAGGTTTGATTTTCTAGTTTAAAATTGAACACAGTTTGTATTTTTCGATTTAAAAGCTAGGTTTTACAAAAGAGAAGCTATGTTTTGGTTTTCTGGTTTTGGTAGATGTT
CTCAGTGCATTTGTTCAATTTAAACCCCAGTTTAAAGAGATAAATGACATAAAATAATTTTATTAGTGTCCAACAAGATGACCACAAATAAGTGAAAGGGACTGCTAAGTACAATAGTGAGGGATACAACGTGGAAGTGCAGAGGTTGCTCCTATAAAATAAAAATAAAAGAAACAAGGTAAAAGCATATATAATCTATG
CTATACTAGAATTTTTTTTTGTATTCTAGTTTTTTTTGTATTCTAGTACAAGGCAATGGGAGAGTAGAGCAGTGATGCAGAAATATACAAATACTGTTGAAAACCTAAGAATAACTCCTCCATTAAGGGGGGTAAGGGATGATGCCTCTCCCTAGGGGCACCGGTCAACCAGCCCTGATGCTCCCACTATTAACATCTGA
GGCCGAAGACAAGAAACTGATGATAGATGTCTGATCTTAGGATCTAGAAGAGCTGGAAGATCTGGTCTGTGATTTGTCTTGATATCCAGATGAGGTAGTCCCATGCTGAGATCTGGATGAAGCCCCCTGTTTGTGTGTGCTGTGTGAACTGTCTCAGGATCTAAGATGACACCATCATATAGGCCTCATTGGTTGAGCCC
GGATGGTCTCTCTAGTCCTCACTGATCTAATGGCTGATGAAGTGCTATTGTATGCATGCTTCTTGGTGCCTCTCTCTGATGTGAACATCGGAAAGAATGAAGTGATCGGCCTTGAGGTGTCTGATCTGGGCAGGGGTCTTTGTATGTGAGACCAAAGGTTGAGGGATTCCTGCATGTAAAGCAGTAGGCATCTTTTTCCT
GGGAACCAAAAGAAGATGGAGAGAGAGTTTTGAGACTCCCTAAAAAGAGAGTGAAAGCACCCTTTAATCAATTTATTTTTCCAGGTTACTACCAAAGTTTAAAAAAAACTAAAGGGGGCAAAAGTGATTTTGAAAGAGAGATTTTTTTCTTTAAGGGGTAGCTACCTTTCCCTCTAGCTGCCATTTTTGGGCCATACAGA
TCATGCCGTACAATGTATCTAAGACCGTACAGATGGAAATCAGGCCATATAGCCACTGTACAACTTGTACAGAGACCAATTATAGCTGCCAAGCAGCTGTATGGATGCCTAGAATTGGGCTGTATGGTACAGATTTCAGCCATGAGAAAGAGAAATTTGATCAGTAAAGCCACTGCCAAGGCTGATCTCTTGCATAATTT
TCATAGATTTCTCTGTTTTTCAGCAAACTTTGCAATTTCTTAGTCAATTCAGCAGTTTTCGACTGTTCAAGGAGAAATTTCTGTAATTAGGAGCAATTTGACAGGTATGTAGCAGATTTCTGTGTTTTCTGCTGTCTTTTTTCAGAAGTTTCTTGCATTTGTAAAAAATTGGCAGATTCATTGGTTTTAGCGACAAATAT
GAATATTTTTCAGCAGATCTCAATGTTTTTCTACAGATTTATTCATTTTCAAAAGTTATTTTTCTGTCTTCTCTTTGTAATTTTCCAATTAGGGGAGGCAAGAGATAAGATAAGAAAATTTTATGAATATCCAACAAATGACCCCTAAAGTAGGTCAAAGTGACTGTTGGGTACAACGATGTCAATGCAAAGTGGGAGCG
CTAAAACGGCTCCTATAAGAAATATAAACATGAAGCAAAAAAAACAAGAGTG
Intron 2 GTATGTTTCT ... ATGGTATCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 65 | 14 | 42 | 10 |
| A2 | 59.09 | 18 | 20 | 32 |
| A3 | 57.14 | 18 | 29 | 19 |
| A4 | 60 | 20 | 34 | 26 |
| A5 | 87.5 | 2 | 17 | 11 |
| A6 | 4.76 | 10 | 0 | 1 |
| A7 | 0 | 16 | 0 | 0 |
| A8 | 5.88 | 8 | 0 | 1 |
| A9 | 2.44 | 20 | 0 | 1 |
| A10 | 0 | 9 | 0 | 0 |
>TRINITY_DN106268_c9_g1_i5 from sample A4 / Example spliced isoformTATGTAATAAATTGGTTATTTCAGTTGGAGTAAGGGAGCAAAGATAGGATGGCACAGTGACAATAATAGACCCTATCTCAAGCAACGGCATTATGCGAGCCACGGTAGGGAAATTTTAAGAAGTGGGTGAATACCTAGGGACTGCACAGATCTGTGATGGACCGATGAATTACTTTTCGATACAAACTAAGAAACCGAAA
GGACTTTCAAGGCTGTATGCTATTTAAACAACTACGGTGAGGACTTTAAAGGTGGTCTGTTCCACTTTCAAGAAGGCGAACCTAATACTATTGTTCCAAAG
>TRINITY_DN106268_c9_g1_i7 from sample A4 / Example unspliced isoform:TATGTAATAAATTGGTTATTTCAGTTGGAGTAAGGGAGCAAAGATAGGATGGCACAGTGACAATAATAGACCCTATCTCAAGCAACGGCATTATGCGgtatgtttcttattgttttgcatcttgttaaactatagattaccaacatgcagaggtgatcttttgtggacgaacctaattatatgcttcttcaacagttgaa
atgtaaactgtgtagtcctagatcatcaatcattggccattagatgttttaacaccctttatgattttggttttcaagaaaatcttttaaaatgagattatttttggaaacttctagggtgaagtcttagtgtttaatactaaaaaatgtagagattgttttcttttgaaaatgcatcatatattaaatttctgcacaaa
atgtagtacatgaaatcttacacataaatgatctaggccgagattataaaggttatcccactctacataggcaagggatgctatcatattttccttagccccaatcttacgagaggatgcccttacggaaaatgccagttttggctgaagtttgcactaccaactctgcactgagtgttgtagtctttcccaaatgaaaa
ggagaagcatccccatttgaatgtaccttgagtgtagagacaacaatgcagagattgtaacttgaaatatgttgtaaatgtacaagttgagtaattgctaagttgatataaattgtttgcacaatcattcatttctcgtattatttttctattgcaaagctgtttctcagtacttttgttttgtatctgctggcatcgat
ctacaattatgttgataattctggttatggtttgtttattaggccatgtctacaagtacaaggtgtgctttaaatatgcaacgtcttcttatggtgatgtctctcctttgttagagtttataatggtcatctaaattgtagatttgggcataataataaagtcactgtatgacttagtcaactttatacttatgttgtac
taatgactttacatttaagtcattttagtgtttatgcatctaggtttatgtcattcctttgatataaagagatggttgctctctttatttaacatccaagaagtatctctcattcaagttctctcttgtgttcttggtttctttgtgtgttctgcttttgtaatatggtatcagAGCCACGGTAGGGAAATTTTAAGAAG
TGGGTGAATACCTAGGGACTGCACAGATCTGTGATGGACCGATGAATTACTTTTCGATACAAACTAAGAAACCGAAAGGACTTTCAAGGTTAGGTTTGATTTTCTAGTTTAAAATTGAACACAGTTTGTATTTTTCGATTTAAAAGCTAGGTTTTACAAAAGAGAAGCTATGTTTTGGTTTTCTGGTTTTGGTAGATGTT
CTCAGTGCATTTGTTCAATTTAAACCCCAGTTTAAAGAGATAAATGACATAAAATAATTTTATTAGTGTCCAACAAGATGACCACAAATAAGTGAAAGGGACTGCTAAGTACAATAGTGAGGGATACAACGTGGAAGTGCAGAGGTTGCTCCTATAAAATAAAAATAAAAGAAACAAGGTAAAAGCATATATAATCTATG
CTATACTAGAATTTTTTTTTGTATTCTAGTTTTTTTTGTATTCTAGTACAAGGCAATGGGAGAGTAGAGCAGTGATGCAGAAATATACAAATACTGTTGAAAACCTAAGAATAACTCCTCCATTAAGGGGGGTAAGGGATGATGCCTCTCCCTAGGGGCACCGGTCAACCAGCCCTGATGCTCCCACTATTAACATCTGA
GGCCGAAGACAAGAAACTGATGATAGATGTCTGATCTTAGGATCTAGAAGAGCTGGAAGATCTGGTCTGTGATTTGTCTTGATATCCAGATGAGGTAGTCCCATGCTGAGATCTGGATGAAGCCCCCTGTTTGTGTGTGCTGTGTGAACTGTCTCAGGATCTAAGATGACACCATCATATAGGCCTCATTGGTTGAGCCC
GGATGGTCTCTCTAGTCCTCACTGATCTAATGGCTGATGAAGTGCTATTGTATGCATGCTTCTTGGTGCCTCTCTCTGATGTGAACATCGGAAAGAATGAAGTGATCGGCCTTGAGGTGTCTGATCTGGGCAGGGGTCTTTGTATGTGAGACCAAAGGTTGAGGGATTCCTGCATGTAAAGCAGTAGGCATCTTTTTCCT
GGGAACCAAAAGAAGATGGAGAGAGAGTTTTGAGACTCCCTAAAAAGAGAGTGAAAGCACCCTTTAATCAATTTATTTTTCCAGGTTACTACCAAAGTTTAAAAAAAACTAAAGGGGGCAAAAGTGATTTTGAAAGAGAGATTTTTTTCTTTAAGGGGTAGCTACCTTTCCCTCTAGCTGCCATTTTTGGGCCATACAGA
TCATGCCGTACAATGTATCTAAGACCGTACAGATGGAAATCAGGCCATATAGCCACTGTACAACTTGTACAGAGACCAATTATAGCTGCCAAGCAGCTGTATGGATGCCTAGAATTGGGCTGTATGGTACAGATTTCAGCCATGAGAAAGAGAAATTTGATCAGTAAAGCCACTGCCAAGGCTGATCTCTTGCATAATTT
TCATAGATTTCTCTGTTTTTCAGCAAACTTTGCAATTTCTTAGTCAATTCAGCAGTTTTCGACTGTTCAAGGAGAAATTTCTGTAATTAGGAGCAATTTGACAGGTATGTAGCAGATTTCTGTGTTTTCTGCTGTCTTTTTTCAGAAGTTTCTTGCATTTGTAAAAAATTGGCAGATTCATTGGTTTTAGCGACAAATAT
GAATATTTTTCAGCAGATCTCAATGTTTTTCTACAGATTTATTCATTTTCAAAAGTTATTTTTCTGTCTTCTCTTTGTAATTTTCCAATTAGGGGAGGCAAGAGATAAGATAAGAAAATTTTATGAATATCCAACAAATGACCCCTAAAGTAGGTCAAAGTGACTGTTGGGTACAACGATGTCAATGCAAAGTGGGAGCG
CTAAAACGGCTCCTATAAGAAATATAAACATGAAGCAAAAAAAACAAGAGTG
Intron 3 GTATGTTTCT ... ATGGTATCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 65 | 14 | 42 | 10 |
| A2 | 59.09 | 18 | 20 | 32 |
| A3 | 57.14 | 18 | 29 | 19 |
| A4 | 60 | 20 | 34 | 26 |
| A5 | 87.5 | 2 | 17 | 11 |
| A6 | 4.76 | 10 | 0 | 1 |
| A7 | 0 | 16 | 0 | 0 |
| A8 | 5.88 | 8 | 0 | 1 |
| A9 | 2.44 | 20 | 0 | 1 |
| A10 | 0 | 9 | 0 | 0 |
>TRINITY_DN106268_c9_g1_i5 from sample A4 / Example spliced isoformTATGTAATAAATTGGTTATTTCAGTTGGAGTAAGGGAGCAAAGATAGGATGGCACAGTGACAATAATAGACCCTATCTCAAGCAACGGCATTATGCGAGCCACGGTAGGGAAATTTTAAGAAGTGGGTGAATACCTAGGGACTGCACAGATCTGTGATGGACCGATGAATTACTTTTCGATACAAACTAAGAAACCGAAA
GGACTTTCAAGGCTGTATGCTATTTAAACAACTACGGTGAGGACTTTAAAGGTGGTCTGTTCCACTTTCAAGAAGGCGAACCTAATACTATTGTTCCAAAG
>TRINITY_DN106268_c9_g1_i6 from sample A4 / Example unspliced isoform:TATGTAATAAATTGGTTATTTCAGTTGGAGTAAGGGAGCAAAGATAGGATGGCACAGTGACAATAATAGACCCTATCTCAAGCAACGGCATTATGCGgtatgtttcttattgttttgcatcttgttaaactatagattaccaacatgcagaggtgatcttttgtggacgaacctaattatatgcttcttcaacagacaat
tgagataaaatagttgaaatgtaaactgtgtagtcctagatcattaatcattggccgttagatgttttaacaccctttatgattttggttttcaagaaaatcttttaaaatgagattatttttggaaacttctagggtgaagtcttagtgtttaatactaaaaaatgtagagattgttttcttttgaaaatgcatcatat
attaaatttctgcacaaaatgtagtacatgaaatcttacacataaatgatctaggccgagattataaaggttatcccactctacataggcaagggatgctatcatattttccttagccccaatcttacgagaggatgcccttacggaaaatgccagttttggctgaagtttgcactaccaactctgcactgagtgttgta
gtctttcccaaatgaaaaggagaagcatccccatttgaatgtaccttgagtgtagagacaacaatgcagagattgtaacttgaaatatgttgtaaatgtacaagttgagtaattgctaagttgatataaattgtttgcacaatcattcatttctcgtattatttttctattgcaaagctgtttctcagtacttttgtttt
gtatctgctggcatcgatctacaattatgttgataattctggttatggtttgtttattaggccatgtctacaagtacaaggtgtgctttaaatatgcaacgtcttcttatggtgatgtctctcctttgttagagtttataatggtcatctaaattgtagatttgggcataataataaagtcactgtatgacttagtcaac
tttatacttatgttgtactaatgactttacatttaagtcattttagtgtttatgcatctaggtttatgtcattcctttgatataaagagatggttgctctctttatttaacatccaagaagtatctctcattcaagttctctcttgtgttcttggtttctttgtgtgttctgcttttgtaatatggtatcagAGCCACGG
TAGGGAAATTTTAAGAAGTGGGTGAATACCTAGGGACTGCACAGATCTGTGATGGACCGATGAATTACTTTTCGATACAAACTAAGAAACCGAAAGGACTTTCAAGGTTAGGTTTGATTTTCTAGTTTAAAATTGAACACAGTTTGTATTTTTCGATTTAAAAGCTAGGTTTTACAAAAGAGAAGCTATGTTTTGGTTTT
CTGGTTTTGGTAGATGTTCTCAGTGCATTTGTTCAATTTAAACCCCAGTTTAAAGAGATAAATGACATAAAATAATTTTATTAGTGTCCAACAAGATGACCACAAATAAGTGAAAGGGACTGCTAAGTACAATAGTGAGGGATACAACGTGGAAGTGCAGAGGTTGCTCCTATAAAATAAAAATAAAAGAAACAAGGTAA
AAGCATATATAATCTATGCTATACTAGAATTTTTTTTTGTATTCTAGTTTTTTTTGTATTCTAGTACAAGGCAATGGGAGAGTAGAGCAGTGATGCAGAAATATACAAATACTGTTGAAAACCTAAGAATAACTCCTCCATTAAGGGGGGTAAGGGATGATGCCTCTCCCTAGGGGCACCGGTCAACCAGCCCTGATGCT
CCCACTATTAACATCTGAGGCCGAAGACAAGAAACTGATGATAGATGTCTGATCTTAGGATCTAGAAGAGCTGGAAGATCTGGTCTGTGATTTGTCTTGATATCCATATGAGGTAGCCCCATGCTGAGATCTGGATGAAGCCCCCTGTTTGCGTGTGCTGTGCGAACTGTCTCAGGATCTAAGATGATACCCTCATATAG
GCCTCATTGGTTGAGCCCGGATGGTCTCTCTAGTCCTCACTGATCCAATGGCTGTTGAAGTGCTATTGTATGCATGCTTCTTGGTGCCTCTCTCTGATGCAAGGTTACTTGGGAGCGGGTGCAAAAAGCGAAATTTTCAAAAGCTTCCGGTTTGGGAGCATTGCGGGAGCG