sp|Q9SCK0|AT13A_ARATH ----> Autophagy-related protein 13a
Intron 1 GTAAGAAGAG ... GAAAAATTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 64.71 | 12 | 0 | 22 |
| A2 | 73.53 | 9 | 1 | 25 |
| A3 | 74.19 | 8 | 0 | 23 |
| A4 | 70 | 6 | 0 | 14 |
| A5 | 75 | 2 | 0 | 6 |
| A6 | 57.14 | 6 | 0 | 8 |
| A7 | 69.23 | 8 | 4 | 18 |
| A8 | 65 | 7 | 0 | 13 |
| A9 | 81.25 | 3 | 1 | 13 |
| A10 | 77.5 | 9 | 0 | 31 |
>TRINITY_DN46943_c0_g1_i2 from sample A7 / Example spliced isoformCTGGCTTCCAACTGCGACACCTCACCACTTACCAGGTCATGCACGCAGATAGATTGAGCGTACAGATATTACACGTGTCAGCTTAGAATCTCTGAAAACCGAATCTTGAACTCTTTCTGAAGTTATGGGGTGGGATCGGCTCACGGCGTTTATTTGCTTTTGCTGTGGTGACTGGTTGAAGGTTCGATTCCTGCAAAGTG
GGCCGCAGGGCCGATACAGGGCAGGCTATTGCGGCGTTCGCAGTTTCATCCGTGGCAGAGTCTGTTAAAATTCCGCACCCATAAGGGCTTGTATTTTTTTAAGCTTTTTTCCTCTTTGCAAGAAGTCGCTGGTTCGAGTATCCCAGCTGATTCAATGGCAGAGTCGCCTCAGATTGAACAGATTGTCGTGGGGTTCTTTA
CGAAGTGCCTCCATATAATACTAGAATCCAGGATTACCGCCCTTTCGTCGGCGTCGTCGATGGCAAAACCCTCCTCAAAGCAGTCCTCGTTCAATTTGACGCTAAGTCTAGACGAGAATGCGATTCCCAGCATAGAGCCCTGGAATCGAACCCTGACTATGGAACCTATGTTTGTGGACATCTTCGAGGCCGGCGCGGGC
ATGCCCTCCACGTCAGCGGCCGGCGGCAAAGTATTAGAGAGATGGATGGTTAATTATTCGCATGTTTCTTCATCCTCTCGCTCCAGGTTTGCCTGCGCTGCAGATATGGAACGACCAGCTGTGTACAAGAGGGCAATCATACTGCTACGCTCTGTGTATACCATGGCAAGGATGTTGCCAGCTCACCGGAACGCAATGCG
GCTGGATTACAGGATCTCTGCTTGTCCAGAGCCCCTGACACGCGGGAAGATGCACCTCCACAACTTTATCCCCGTGGAGACCCCTCGCGGTAAGTTTTCTATCTCTGTTTCATATTTGCCTGCCACGCCAACAGCAGGAAGTAGAACTGCCAATGAAAGTATCTGTATGTCGACAAGCCCTACACAGATAATTGCAGACT
ATGTTCAGAGCCCTGCTGCCTCTGAGAAGAGTTCTCAAGGTGACGTGGGTACGAGTGGAAAACCTGGGCTTTCATCGGCTCCACCATCCCCTGGATATAATAATGGGGGTTTTGGGAGATGCCATAGCTGGAGTGGGGCTCTCAATAAACTTATGCTCCGCTCACCATCGCAATCCCCTTTGATGAATAACGCCAGTTAT
CGAAGTTCTCCATTGAATTCTGGAACCCCCCCACGTCCTACGAGGTGCCGTAGCATCGACCACTTTACTTCTCCTTCCCCATCACCGCCTATGCGAAGTCGTCTTTTGCAGAATGAAAATGCTAGCAGTTCAGTTCTGCTGCGAGCCGAGAGCGCTCCTGTAAGCATTCCACCATGTTCTAGTGCAAGGAGCCCTCAAAA
TTGGGCCGCTGAAAATAGAGCCTTTCTGCCGCCTCATACTGCTAAGACCAGAAATCCTGTTCGCACTTTTTCTGGTAATTCTAGGCCCTTGTCTTCAAATTTTCCAAATTCTCAAGGATCAAGGACTTCTGAATGTCAGACAGCTTTTCAAGTATACCCAGGCCAGAAGGTGGGTAAATTGGAGAGAGGGGACAGTGAAT
CATTAATGGGATCAAGGATCATGCACAGTGGCTCGCCACGGGTTATGGGCTCACGAAGTTCTAGCAGACGTTCTTATAATTATGAAATTGAAGATGAAGATTTGTCTTTACCCTTTGCGTACCAGGATGATGAGAGCGATAGCTTGAGGAGCAGAACGGGCTCTTTTGATAGTAGAGGAAATATGTCAGAGGCAATGGAA
ACGATGGGCCAGTCTTCAACACCTAGAAGATCACAGAATGCAGCAGTAGGTGCACTTGTAGAGATGCTGAAATCAGCATCACCTTTGTTCTCAGATTTTCAAAATCCATCGGACTTTTCCCCAAACTCTACTATGATTTCAAGAAATGACTCCTGTCCAAATCAAACTGTTGATGACATCAATTCTTGTAGTATTTCTTC
AGGCCCTTCTGTTTGTAAGAAAGCTGCTGATGCATTACAAGAGCTTAGAAACTACATAGAAATGAAAGACAACTTGTTGAGACAGAGTGGAATCCCAGAAGGAGCCAGTCGTGCCAAGAATGTACAGTCTTCTAAACGTGAAAAGCCTAAAGGTTTCTAGTTGGGCTCTTCAAGCCCTTCTGCGCATAAGAAATCTGCTG
ATGCATTACAAGAGTTTAGAAACTACATAGAAATGAAATACTCTTTATTGTGATAAAGCGGATTTCCACCAGTAATGAGTTGTGCTAAGAATCTGCAGCCTTATAAACGTGAAGAGTCCAAAGGTTAATGGTTTGTTATTCTAGCATGCGAAGGATTTATTGTGGTTCAGGTAAAGGGATAGTGGTAATGACCTGGCTTC
ACATTGTACAGTATGTAGGATTATCTGATGTTGACGATGGCCTGTATAAAATGAGGCCGTTATTCTGCTGATTTGTAAATATGTCGATATCAGTTCTTGAAACATGACCAGATAAGGGAAAGATGTCATTTTTTCAGATATTTTGTTGAATCTTGATCATACTATTAGTAGTAGTTCAACAAATAGAGCAACGAAATCTA
AGCACTTAACAAATGAAAATTTGAATTAGAGTCTAATAGTTTC
>TRINITY_DN46943_c0_g1_i3 from sample A7 / Example unspliced isoform:CTGGCTTCCAACTGCGACACCTCACCACTTACCAGGTCATGCACGCAGATAGATTGAGCGTACAGATATTACACGTGTCAGCTTAGAATCTCTGAAAACCGAATCTTGAACTgtaagaagagcagaaagtagtattctgtggagtaatcaaatttgttctcttccttctttttagttgtagattatcgtggctctgttcg
ctttttctttcttttttattatttattttatgcgttaaaccctaccacgatctgacagaactaaactgtggaaaaattagCTTTCTGAAGTTATGGGGTGGGATCGGCTCACGGCGTTTATTTGCTTTTGCTGTGGTGACTGGTTGAAGGTTCGATTCCTGCAAAGTGGGCCGCAGGGCCGATACAGGGCAGGCTATTGC
GGCGTTCGCAGTTTCATCCGTGGCAGAGTCTGTTAAAATTCCGCACCCATAAGGGCTTGTATTTTTTTAAGCTTTTTTCCTCTTTGCAAGAAGTCGCTGGTTCGAGTATCCCAGCTGATTCAATGGCAGAGTCGCCTCAGATTGAACAGATTGTCGTGGGGTTCTTTACGAAGTGCCTCCATATAATACTAGAATCCAGG
ATTACCGCCCTTTCGTCGGCGTCGTCGATGGCAAAACCCTCCTCAAAGCAGTCCTCGTTCAATTTGACGCTAAGTCTAGACGAGAATGCGATTCCCAGCATAGAGCCCTGGAATCGAACCCTGACTATGGAACCTATGTTTGTGGACATCTTCGAGGCCGGCGCGGGCATGCCCTCCACGTCAGCGGCCGGCGGCAAAGT
ATTAGAGAGATGGATGGTTAATTATTCGCATGTTTCTTCATCCTCTCGCTCCAGGTTTGCCTGCGCTGCAGATATGGAACGACCAGCTGTGTACAAGAGGGCAATCATACTGCTACGCTCTGTGTATACCATGGCAAGGATGTTGCCAGCTCACCGGAACGCAATGCGGCTGGATTACAGGATCTCTGCTTGTCCAGAGC
CCCTGACACGCGGGAAGATGCACCTCCACAACTTTATCCCCGTGGAGACCCCTCGCGGTAAGTTTTCTATCTCTGTTTCATATTTGCCTGCCACGCCAACAGCAGGAAGTAGAACTGCCAATGAAAGTATCTGTATGTCGACAAGCCCTACACAGATAATTGCAGACTATGTTCAGAGCCCTGCTGCCTCTGAGAAGAGT
TCTCAAGGTGACGTGGGTACGAGTGGAAAACCTGGGCTTTCATCGGCTCCACCATCCCCTGGATATAATAATGGGGGTTTTGGGAGATGCCATAGCTGGAGTGGGGCTCTCAATAAACTTATGCTCCGCTCACCATCGCAATCCCCTTTGATGAATAACGCCAGTTATCGAAGTTCTCCATTGAATTCTGGAACCCCCCC
ACGTCCTACGAGGTGCCGTAGCATCGACCACTTTACTTCTCCTTCCCCATCACCGCCTATGCGAAGTCGTCTTTTGCAGAATGAAAATGCTAGCAGTTCAGTTCTGCTGCGAGCCGAGAGCGCTCCTGTAAGCATTCCACCATGTTCTAGTGCAAGGAGCCCTCAAAATTGGGCCGCTGAAAATAGAGCCTTTCTGCCGC
CTCATACTGCTAAGACCAGAAATCCTGTTCGCACTTTTTCTGGTAATTCTAGGCCCTTGTCTTCAAATTTTCCAAATTCTCAAGGATCAAGGACTTCTGAATGTCAGACAGCTTTTCAAGTATACCCAGGCCAGAAGGTGGGTAAATTGGAGAGAGGGGACAGTGAATCATTAATGGGATCAAGGATCATGCACAGTGGC
TCGCCACGGGTTATGGGCTCACGAAGTTCTAGCAGACGTTCTTATAATTATGAAATTGAAGATGAAGATTTGTCTTTACCCTTTGCGTACCAGGATGATGAGAGCGATAGCTTGAGGAGCAGAACGGGCTCTTTTGATAGTAGAGGAAATATGTCAGAGGCAATGGAAACGATGGGCCAGTCTTCAACACCTAGAAGATC
ACAGAATGCAGCAGTAGGTGCACTTGTAGAGATGCTGAAATCAGCATCACCTTTGTTCTCAGATTTTCAAAATCCATCGGACTTTTCCCCAAACTCTACTATGATTTCAAGAAATGACTCCTGTCCAAATCAAACTGTTGATGACATCAATTCTTGTAGTATTTCTTCAGGCCCTTCTGTTTGTAAGAAAGCTGCTGATG
CATTACAAGAGCTTAGAAACTACATAGAAATGAAAGACAACTTGTTGAGACAGAGTGGAATCCCAGAAGGAGCCAGTCGTGCCAAGAATGTACAGTCTTCTAAACGTGAAAAGCCTAAAGGTTTCTAGTTGGGCTCTTCAAGCCCTTCTGCGCATAAGAAATCTGCTGATGCATTACAAGAGTTTAGAAACTACATAGAA
ATGAAATACTCTTTATTGTGATAAAGCGGATTTCCACCAGTAATGAGTTGTGCTAAGAATCTGCAGCCTTATAAACGTGAAGAGTCCAAAGGTTAATGGTTTGTTATTCTAGCATGCGAAGGATTTATTGTGGTTCAGGTAAAGGGATAGTGGTAATGACCTGGCTTCACATTGTACAGTATGTAGGATTATCTGATGTT
GACGATGGCCTGTATAAAATGAGGCCGTTATTCTGCTGATTTGTAAATATGTCGATATCAGTTCTTGAAACATGACCAGATAAGGGAAAGATGTCATTTTTTCAGATATTTTGTTGAATCTTGATCATACTATTAGTAGTAGTTCAACAAATAGAGCAACGAAATCTAAGCACTTAACAAATGAAAATTTGAATTAGAGT
CTAATAGTTTC
Intron 2 GTAAGAAGAG ... AGGCCAGAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 85.71 | 1 | 0 | 6 |
| A2 | -1 | 0 | 1 | 0 |
| A3 | 100 | 0 | 0 | 6 |
| A4 | 100 | 0 | 0 | 6 |
| A5 | -1 | 0 | 0 | 0 |
| A6 | 85.71 | 3 | 0 | 18 |
| A7 | 77.78 | 6 | 4 | 21 |
| A8 | 76.19 | 5 | 0 | 16 |
| A9 | 91.67 | 1 | 1 | 11 |
| A10 | 85.71 | 3 | 0 | 18 |
>TRINITY_DN46943_c0_g1_i4 from sample A7 / Example spliced isoformCTGGCTTCCAACTGCGACACCTCACCACTTACCAGGTCATGCACGCAGATAGATTGAGCGTACAGATATTACACGTGTCAGCTTAGAATCTCTGAAAACCGAATCTTGAACTGTGGGTAAATTGGAGAGAGGGGACAGTGAATCATTAATGGGATCAAGGATCATGCACAGTGGCTCGCCACGGGTTATGGGCTCACGAA
GTTCTAGCAGACGTTCTTATAATTATGAAATTGAAGATGAAGATTTGTCTTTACCCTTTGCGTACCAGGATGATGAGAGCGATAGCTTGAGGAGCAGAACGGGCTCTTTTGATAGTAGAGGAAATATGTCAGAGGCAATGGAAACGATGGGCCAGTCTTCAACACCTAGAAGATCACAGAATGCAGCAGTAGGTGCACTT
GTAGAGATGCTGAAATCAGCATCACCTTTGTTCTCAGATTTTCAAAATCCATCGGACTTTTCCCCAAACTCTACTATGATTTCAAGAAATGACTCCTGTCCAAATCAAACTGTTGATGACATCAATTCTTGTAGTATTTCTTCAGGCCCTTCTGTTTGTAAGAAAGCTGCTGATGCATTACAAGAGCTTAGAAACTACAT
AGAAATGAAAGACAACTTGTTGAGACAGAGTGGAATCCCAGAAGGAGCCAGTCGTGCCAAGAATGTACAGTCTTCTAAACGTGAAAAGCCTAAAGGTTTCTAGTTGGGCTCTTCAAGCCCTTCTGCGCATAAGAAATCTGCTGATGCATTACAAGAGTTTAGAAACTACATAGAAATGAAATACTCTTTATTGTGATAAA
GCGGATTTCCACCAGTAATGAGTTGTGCTAAGAATCTGCAGCCTTATAAACGTGAAGAGTCCAAAGGTTAATGGTTTGTTATTCTAGCATGCGAAGGATTTATTGTGGTTCAGGTAAAGGGATAGTGGTAATGACCTGGCTTCACATTGTACAGTATGTAGGATTATCTGATGTTGACGATGGCCTGTATAAAATGAGGC
CGTTATTCTGCTGATTTGTAAATATGTCGATATCAGTTCTTGAAACATGACCAGATAAGGGAAAGATGTCATTTTTTCAGATATTTTGTTGAATCTTGATCATACTATTAGTAGTAGTTCAACAAATAGAGCAACGAAATCTAAGCACTTAACAAATGAAAATTTGAATTAGAGTCTAATAGTTTC
>TRINITY_DN46943_c0_g1_i3 from sample A7 / Example unspliced isoform:CTGGCTTCCAACTGCGACACCTCACCACTTACCAGGTCATGCACGCAGATAGATTGAGCGTACAGATATTACACGTGTCAGCTTAGAATCTCTGAAAACCGAATCTTGAACTgtaagaagagcagaaagtagtattctgtggagtaatcaaatttgttctcttccttctttttagttgtagattatcgtggctctgttcg
ctttttctttcttttttattatttattttatgcgttaaaccctaccacgatctgacagaactaaactgtggaaaaattagctttctgaagttatggggtgggatcggctcacggcgtttatttgcttttgctgtggtgactggttgaaggttcgattcctgcaaagtgggccgcagggccgatacagggcaggctattgc
ggcgttcgcagtttcatccgtggcagagtctgttaaaattccgcacccataagggcttgtatttttttaagcttttttcctctttgcaagaagtcgctggttcgagtatcccagctgattcaatggcagagtcgcctcagattgaacagattgtcgtggggttctttacgaagtgcctccatataatactagaatccagg
attaccgccctttcgtcggcgtcgtcgatggcaaaaccctcctcaaagcagtcctcgttcaatttgacgctaagtctagacgagaatgcgattcccagcatagagccctggaatcgaaccctgactatggaacctatgtttgtggacatcttcgaggccggcgcgggcatgccctccacgtcagcggccggcggcaaagt
attagagagatggatggttaattattcgcatgtttcttcatcctctcgctccaggtttgcctgcgctgcagatatggaacgaccagctgtgtacaagagggcaatcatactgctacgctctgtgtataccatggcaaggatgttgccagctcaccggaacgcaatgcggctggattacaggatctctgcttgtccagagc
ccctgacacgcgggaagatgcacctccacaactttatccccgtggagacccctcgcggtaagttttctatctctgtttcatatttgcctgccacgccaacagcaggaagtagaactgccaatgaaagtatctgtatgtcgacaagccctacacagataattgcagactatgttcagagccctgctgcctctgagaagagt
tctcaaggtgacgtgggtacgagtggaaaacctgggctttcatcggctccaccatcccctggatataataatgggggttttgggagatgccatagctggagtggggctctcaataaacttatgctccgctcaccatcgcaatcccctttgatgaataacgccagttatcgaagttctccattgaattctggaaccccccc
acgtcctacgaggtgccgtagcatcgaccactttacttctccttccccatcaccgcctatgcgaagtcgtcttttgcagaatgaaaatgctagcagttcagttctgctgcgagccgagagcgctcctgtaagcattccaccatgttctagtgcaaggagccctcaaaattgggccgctgaaaatagagcctttctgccgc
ctcatactgctaagaccagaaatcctgttcgcactttttctggtaattctaggcccttgtcttcaaattttccaaattctcaaggatcaaggacttctgaatgtcagacagcttttcaagtatacccaggccagaagGTGGGTAAATTGGAGAGAGGGGACAGTGAATCATTAATGGGATCAAGGATCATGCACAGTGGC
TCGCCACGGGTTATGGGCTCACGAAGTTCTAGCAGACGTTCTTATAATTATGAAATTGAAGATGAAGATTTGTCTTTACCCTTTGCGTACCAGGATGATGAGAGCGATAGCTTGAGGAGCAGAACGGGCTCTTTTGATAGTAGAGGAAATATGTCAGAGGCAATGGAAACGATGGGCCAGTCTTCAACACCTAGAAGATC
ACAGAATGCAGCAGTAGGTGCACTTGTAGAGATGCTGAAATCAGCATCACCTTTGTTCTCAGATTTTCAAAATCCATCGGACTTTTCCCCAAACTCTACTATGATTTCAAGAAATGACTCCTGTCCAAATCAAACTGTTGATGACATCAATTCTTGTAGTATTTCTTCAGGCCCTTCTGTTTGTAAGAAAGCTGCTGATG
CATTACAAGAGCTTAGAAACTACATAGAAATGAAAGACAACTTGTTGAGACAGAGTGGAATCCCAGAAGGAGCCAGTCGTGCCAAGAATGTACAGTCTTCTAAACGTGAAAAGCCTAAAGGTTTCTAGTTGGGCTCTTCAAGCCCTTCTGCGCATAAGAAATCTGCTGATGCATTACAAGAGTTTAGAAACTACATAGAA
ATGAAATACTCTTTATTGTGATAAAGCGGATTTCCACCAGTAATGAGTTGTGCTAAGAATCTGCAGCCTTATAAACGTGAAGAGTCCAAAGGTTAATGGTTTGTTATTCTAGCATGCGAAGGATTTATTGTGGTTCAGGTAAAGGGATAGTGGTAATGACCTGGCTTCACATTGTACAGTATGTAGGATTATCTGATGTT
GACGATGGCCTGTATAAAATGAGGCCGTTATTCTGCTGATTTGTAAATATGTCGATATCAGTTCTTGAAACATGACCAGATAAGGGAAAGATGTCATTTTTTCAGATATTTTGTTGAATCTTGATCATACTATTAGTAGTAGTTCAACAAATAGAGCAACGAAATCTAAGCACTTAACAAATGAAAATTTGAATTAGAGT
CTAATAGTTTC
Intron 3 GTAAATAAGA ... TTATTTTTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 42.73 | 6 | 1 | 4.5 |
| A2 | 100 | 0 | 2 | 2 |
| A3 | 14.29 | 6 | 2.5 | 1 |
| A4 | 25 | 6 | 1.5 | 2 |
| A5 | 100 | 0 | 0 | 1 |
| A6 | 14.29 | 18 | 1 | 3 |
| A7 | 19.23 | 21 | 3 | 5 |
| A8 | 38.46 | 16 | 2 | 10 |
| A9 | 31.25 | 11 | 3 | 5 |
| A10 | 14.29 | 18 | 0.5 | 3 |
>TRINITY_DN42327_c0_g1_i1 from sample A8 / Example spliced isoformCAAATTTGTTCTCTTTCTTCTTTTTAATTTTAGAGTTTCGTGGCTCTGTTCGCTTTTTCTTTCTTTTTTATTATTTATTTTATGCGTTAAACCCTACCACGATCTGACAGAACTAAACTGTGGAAAAATTAGCTTTCTGAAGTTATGGGGTGGGATCGGCTCACGGCGTTTATTTGCTTTTGCTGTGGTGACTGGTTGAA
GGTTCGATTCCTGCAAAGTGGGCCGCAGGGCCGATACAGAGCAGGCTATTGCGGCGTTCGCAGTTTCATCCGTGGCAGAGTCTGTTAAAATTCCGCACCCATAAGGGCTTGTATTTTTTTAAGCTTTTTTCCTCTTTGCAAGAAGTCGCTGGTTCGAGTATCCCAGCTGATTCAATGGCAGAGTCGCCTCAGATTGAACA
GATTGTCGTGGGGTTCTTTACGAAGTGCCTCCATATAATACTAGAATCCAGGATTACCGGCCTTTCGTCGGCGTCGTCGATGGCAAAACCCTCCTCAAAGCAGTCCTCGTTCAATTTGACGCTAAGTCTAGACGAGAATGCGATTCCCAGCATAGAGCCCTGGAATCGAACCCTGACTATGGAACCTATGTTTGTGGACA
TCTTCGAGGCCGGCGCGGGCATGCCCTCCACGTCAGCGGCCGGCGGCAAAGTATTAGAGAGATGGATGGTTAATTATTCGCATGTTTCTTCATCCTCTCGCTCCAGGTTTGCCTGCGCTGCAGATATGGAACGACCAGCTGTGTACAAGAGGGCAATCATACTGCTACGCTCTGTGTATACCATGGCAAGGATGTTGCCA
GCTCACCGGAACGCAATGCGGCTGGATTACAGGATCTCTGCTTGTCCAGAGCCCCTGACACGCGGGAAGATGCACCTCCACAACTTTATCCCCGTGGAGACCCCTCGCGGTAAGTTTTCTATCTCTGTTTCATATTTGCCTGCCACGCCAACAGCAGGAAGTAGAACTGCCAATGAAAGTATCTGTATGTCGACAAGCCC
TACACAGATAATTGCAGACTATGTTCAGAGCCCTGCTGCCTCTGAGAAGAGTTCTCAAGGTGACGTGGGTACGAGTGGAAAACCTGGGCTTTCATCGGCTCCACCATCCCCTGGATATAATAATGGGGGTTTTGGGAGATGCCATAGCTGGAGTGGGGCTCTCAATAAACTTATGCTCCGCTCACCATCGCAATCCCCTT
TGATGAATAACGCCAGTTATCGAAGTTCTCCATTGAATTCTGGAACCCCCCCACGTCCTACGAGGTGCCGTAGCATCGACCACTTTACTTCTCCTTCCCCATCACCGCCTATGCGAAGTCGTCTTTTGCAGAATGAAAATGCTAGCAGTTCAGTTCTGCTGCGAGCCGAGAGCGCTCCTGTAAGCATTCCACCATGTTCT
AGTGCAAGGAGCCCTCAAAATTGGGCCGCTGAAAATAGAGCCTTTCTGCCGCCTCATACTGCTAAGACCAGAAATCCTGTTCGCACTTTTTCTGGTAATTCTAGGCCCTTGTCTTCAAATTTTCCAAATTCTCAAGGATCAAGGACTTCTGAATGTCAGACAGCTTTTCAAGTATACCCAGGCCAGAAGGTGGGTAAATT
GGAGAGAGAGGACAGTGAATCATTATTGGGATCAAGGATCACGCACAGTGGCTCGCCACGGGTTATGGGCTCACGAAGTTCTAGCAGACGTTCTTATAATTATGAAATTGAAGATGAAGATTTGTCTTTACCCTTTGCGTACCAGGATGATGAGAGCGATAGCTTGAGGAGCAGAACGGGCTCTTTTGATAGTAGAGGAA
ATATGTCAGAGGCAATGGAAACGATGGGCCAGTCTTCAACACCTAGAAGATCACAGAATGCAGCAGTAGGTGCACTTGTAGAGATGCTGAAATCAGCATCACCTTTGTTCTCAGATTTTCAAAATCCATCGGACTTTTCCCCAAACTCTACTATGATTTCAAGAAATGACTCCTGTCCAAATCAAACTGTTGATGACATC
AATTCTTGTAGTATTTCTTCAGGCCCTTCTGTTTGTAAGAAAGCTGCTGATGCATTACAAGAGCTTAGAAACTACATAGAAATGAAAGACAACTTGTTGAGACAGAGTGGAATCCCAGAAGGAGCCAGTCGTGCTAAGAATGTACAGTCTTCTAAACGTGAAAAGCCTAAAGGTTTCTAGTTGGGCTCTTCAAGCCCTTC
TGCGCATAAGAAATCTGCTGATGCATTACAAGAGTTTAGAAACTACATAGAAATGAAATACTCTTTATTGTGATAAAGCGGATTTCCACTAGTAACCAGTTGTGCCAAGAATCTGCAGCCTTATAAACGTGAAGAGTCCAAAGGTTAATGGTTTGTTATTCTAGCATGCGAAGGATTTATTGTGGTTCAGGTAAAGGGAT
AGTGGTAATGACCTGGCTTCACATTGTACAGTATGTAGGATTATCTGATGTTGACGATGGCCTGTATAAAATGAGGCCGTTATTCTGCTGATTTGTAAATATGTCGATATCAGTTCTTGAAACATGACCAGATAAGGAAAGATGTCATTTTTTCAGATATTTTGTTGAATCTTGATCATACTATTAGTAGTAGTTCAACA
AATAGAGCAACGAAATCCAAGCACTTAACAAATGAAAATTTGAATTAGAGTCTAATAGTTTCTCTGGAAAAGGTTTCTGTTATTGTTTTCCGAG
>TRINITY_DN42327_c0_g1_i2 from sample A8 / Example unspliced isoform:CAAATTTGTTCTCTTTCTTCTTTTTAATTTTAGAGTTTCGTGGCTCTGTTCGCTTTTTCTTTCTTTTTTATTATTTATTTTATGCGTTAAACCCTACCACGATCTGACAGAACTAAACTGTGGAAAAATTAGCTTTCTGAAGTTATGGGGTGGGATCGGCTCACGGCGTTTATTTGCTTTTGCTGTGGTGACTGGTTGAA
GGTTCGATTCCTGCAAAGTGGGCCGCAGGGCCGATACAGAGCAGGCTATTGCGGCGTTCGCAGTTTCATCCGTGGCAGAGTCTGTTAAAATTCCGCACCCATAAGGGCTTGTATTTTTTTAAGCTTTTTTCCTCTTTGCAAGAAGTCGCTGGTTCGAGTATCCCAGCTGATTCAATGGCAGAGTCGCCTCAGATTGAACA
GATTGTCGTGGGGTTCTTTACGAAGTGCCTCCATATAATACTAGAATCCAGGATTACCGGCCTTTCGTCGGCGTCGTCGATGGCAAAACCCTCCTCAAAGCAGTCCTCGTTCAATTTGACGCTAAGTCTAGACGAGAATGCGATTCCCAGCATAGAGCCCTGGAATCGAACCCTGACTATGGAACCTATGTTTGTGGACA
TCTTCGAGGCCGGCGCGGGCATGCCCTCCACGTCAGCGGCCGGCGGCAAAGTATTAGAGAGATGGATGGTTAATTATTCGCATGTTTCTTCATCCTCTCGCTCCAGGTTTGCCTGCGCTGCAGATATGGAACGACCAGCTGTGTACAAGAGGGCAATCATACTGCTACGCTCTGTGTATACCATGGCAAGGATGTTGCCA
GCTCACCGGAACGCAATGCGGCTGGATTACAGGATCTCTGCTTGTCCAGAGCCCCTGACACGCGGGAAGATGCACCTCCACAACTTTATCCCCGTGGAGACCCCTCGCGGTAAGTTTTCTATCTCTGTTTCATATTTGCCTGCCACGCCAACAGCAGGAAGTAGAACTGCCAATGAAAGTATCTGTATGTCGACAAGCCC
TACACAGATAATTGCAGACTATGTTCAGAGCCCTGCTGCCTCTGAGAAGAGTTCTCAAGGTGACGTGGGTACGAGTGGAAAACCTGGGCTTTCATCGGCTCCACCATCCCCTGGATATAATAATGGGGGTTTTGGGAGATGCCATAGCTGGAGTGGGGCTCTCAATAAACTTATGCTCCGCTCACCATCGCAATCCCCTT
TGATGAATAACGCCAGTTATCGAAGTTCTCCATTGAATTCTGGAACCCCCCCACGTCCTACGAGGTGCCGTAGCATCGACCACTTTACTTCTCCTTCCCCATCACCGCCTATGCGAAGTCGTCTTTTGCAGAATGAAAATGCTAGCAGTTCAGTTCTGCTGCGAGCCGAGAGCGCTCCTGTAAGCATTCCACCATGTTCT
AGTGCAAGGAGCCCTCAAAATTGGGCCGCTGAAAATAGAGCCTTTCTGCCGCCTCATACTGCTAAGACCAGAAATCCTGTTCGCACGTTATCTGGTAATTCTAGGCCCTTGTCTTCAAATTTTCCAAATTCTCAAGGATCAAGGACTTCTGAATGTCAGACAGCTTTTCAAGTATACCCAGGCCAGAAGgtaaataagat
aagtctttacttttcattgattttttctttcctttcctggaagaaaattgcaacacaggtttttgatgttttctctccgattggattgagttatttacatcggctattatttttctttctttgtagtccatgctgcgtattaagtcaaggttttcctgctcggttgcttcggtacatttatattttctttgtggtgttta
cttgttacgcctttgcttttcattgttttatactctccttttctaaccccgtgaagactattgttacacataggaaagaattaagaggcttttgaggttttctgtccaataggatcgagttatttacattggccctcatttttcattatttgtaatatgcattccatgctgcatattcctaatacaaagtcaaggcttct
ctgctcagttgctttggtacatttatattcctttgtgttgttcatgcttgttttgtcattttacatttaaaacccattgttctagtgttgtattaaactgatatattctgctgttttatatccttgtagcaatgtatcttgacttgtgaaagattcgttttgcttagctattgtgcttgtattatgcaatgtttattttg
atgaaggagacattcttatttttagGTGGGTAAATTGGAGAGAGAGGACAGTGAATCATTATTGGGATCAAGGATCACGCACAGTGGCTCGCCACGGGTTATGGGCTCACGAAGTTCTAGCAGACGTTCTTATAATTATGAAATTGAAGATGAAGATTTGTCTTTACCCTTTGCGTACCAGGATGATGAGAGCGATAGCT
TGAGGAGCAGAACGGGCTCTTTTGATAGTAGAGGAAATATGTCAGAGGCAATGGAAACGATGGGCCAGTCTTCAACACCTAGAAGATCACAGAATGCAGCAGTAGGTGCACTTGTAGAGATGCTGAAATCAGCATCACCTTTGTTCTCAGATTTTCAAAATCCATCGGACTTTTCCCCAAACTCTACTATGATTTCAAGA
AATGACTCCTGTCCAAATCAAACTGTTGATGACATCAATTCTTGTAGTATTTCTTCAGGCCCTTCTGTTTGTAAGAAAGCTGCTGATGCATTACAAGAGCTTAGAAACTACATAGAAATGAAAGACAACTTGTTGAGACAGAGTGGAATCCCAGAAGGAGCCAGTCGTGCTAAGAATGTACAGTCTTCTAAACGTGAAAA
GCCTAAAGGTTTCTAGTTGGGCTCTTCAAGCCCTTCTGCGCATAAGAAATCTGCTGATGCATTACAAGAGTTTAGAAACTACATAGAAATGAAATACTCTTTATTGTGATAAAGCGGATTTCCACTAGTAACCAGTTGTGCCAAGAATCTGCAGCCTTATAAACGTGAAGAGTCCAAAGGTTAATGGTTTGTTATTCTAG
CATGCGAAGGATTTATTGTGGTTCAGGTAAAGGGATAGTGGTAATGACCTGGCTTCACATTGTACAGTATGTAGGATTATCTGATGTTGACGATGGCCTGTATAAAATGAGGCCGTTATTCTGCTGATTTGTAAATATGTCGATATCAGTTCTTGAAACATGACCAGATAAGGAAAGATGTCATTTTTTCAGATATTTTG
TTGAATCTTGATCATACTATTAGTAGTAGTTCAACAAATAGAGCAACGAAATCCAAGCACTTAACAAATGAAAATTTGAATTAGAGTCTAATAGTTTCTCTGGAAAAGGTTTCTGTTATTGTTTTCCGAG
Intron 4 GTAAATAAGA ... TTATTTTTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 40 | 6 | 0 | 4 |
| A2 | 100 | 0 | 2 | 2 |
| A3 | 14.29 | 6 | 0 | 1 |
| A4 | 25 | 6 | 0 | 2 |
| A5 | 100 | 0 | 0 | 1 |
| A6 | 14.29 | 18 | 0 | 3 |
| A7 | 19.23 | 21 | 1 | 5 |
| A8 | 38.46 | 16 | 0 | 10 |
| A9 | 31.25 | 11 | 0 | 5 |
| A10 | 14.29 | 18 | 0 | 3 |
>TRINITY_DN42509_c0_g1_i2 from sample A9 / Example spliced isoformCTGGCTTCCAACTGTGACACCTCATCACTTACCAGGTCATGCACGCAGATAGATTGAGCGTACAGATATTACACGTGTCAGCTTAGAATCTCTGAAAACCGAATCTTGAACTGTAAGAAGAGCAGAAAGTAGTATTCTGTGGAGTAATCAAATGTGTTCTCTTCCTTCTTTTTAGTTGTAGATTATCGTGGCTCTGTTCG
CTTTTTCTTTCTTTTTTATTATTTATTTTATGCGTTAAACCCTACCACGATCTGACAGAACTAAACTGTGGAAAAATTAGCTTTCTGAAGTTATGGGGTGGGATCGGCTCACGGCGTTTATTTGCTTTTGCTGTGGTGACTGGTTGAAGGTTCGATTCCTGCAAAGTGGGCCGCAGGGCCGATACAGGGCAGGCTATTGC
GGCGTTCGCAGTTTCATCCGTGGCGGAGTCTGTTGAAATTCCGCACCCATAAGGGCTTGTATTTTTTTAAGCTTTTTTCCTCTTTGCAAGAAGTCGCTGGTTCGAGTATCCCAGCTGATTCAATGGCAGAGTCGCCTCAGATTGAACAGATTGTCGTGGGGTTCTTTACGAAGTGCCTCCATATAATACTAGAATCCAGG
ATTACCGCCCTTTCGTCGGCGTCGTCGATGGCAAAACCCTCCTCAAAGCAGTCCTCGTTCAATTTGACGCTAAGTCTAGACGAGAATGCGATTCCCAGCATAGAGCCCTGGAATCGAACCCTGACTATGGAACCTATGTTTGTGGACATCTTCGAGGCCGGCGCGGGCATGCCCTCCACGTCAGCGGCCGGCGGCAAAGT
ATTAGAGAGATGGATGGTTAATTATTCGCATGTTTCTTCATCCTCTCGCTCCAGGTTTGCCTGCGCTGCAGATATGGAACGACCAGCTGTGTACAAGAGGGCAATCATACTGCTACGCTCTGTGTATACCATGGCAAGGATGTTGCCAGCTCACCGGAACGCAATGCGGCTGGATTACAGGATCTCTGCTTGTCCAGAGC
CCCTGACACGCGGGAAGATGCACCTCCACAACTTTATCCCCGTGGAGACCCCTCGCGGTAAGTTTTCTATCTCTGTTTCATATTTGCCTGCCACGCCAACAGCAGGAAGTAGAACTGCCAATGAAAGTATCTGTATGTCGACAAGCCCTACACAGATAATTGCAGACTATGTTCAGAGCCCTGCTGCCTCTGAGAAGAGT
TCTCAAGGTGACGTGGGTACGAGTGGAAAACCTGGGCTTTCATCGGCTCCACCATCCCCTGGATATAATAATGGGGGTTTTGGGAGATGCCATAGCTGGAGTGGGGCTCTCAATAAACTTATGCTCCGCTCACCATCGCAATCCCCTTTGATGAATAACGCCAGTTATCGAAGTTCTCCATTGAATTCTGGAACCCCCCC
ACGTCCTACGAGGTGCCGTAGCATCGACCACTTTACTTCTCCTTCCCCATCACCGCCTATGCGAAGTCGTCTTTTGCAGAATGAAAATGCTAGCAGTTCAGTTCTGCTGCGAGCCGAGAGCGCTCCTGTAAGCATTCCACCATGTTCTAGTGCAAGGAGCCCTCAAAATTGGGCCGCTGAAAATAGAGCCTTTCTGCCGC
CTCATACTGCTAAGACCAGAAATCCTGTTCGCACGTTATCTGGTAATTCTAGGCCCTTGTCTTCAAATTTTCCAAATTCTCAAGGATCAAGGACTTCTGAATGTCAGACAGCTTTTCAAGTATACCCAGGCCAGAAGGTGGGTAAATTGGAGAGAGAGGACAGTGAATCATTAATGGGATCAAGGATCATGCACAGTGGC
TCGCCACGGGTTATGGGCTCACGAAGTTCTAGCAGACGTTCTTATAATTATGAAATTGAAGATGAAGATTTGTCTTTACCCTTTGCGTACCAGGATGATGAGAGCGATAGCTTGAGGAGCAGAACGGGCTCTTTTGATAGTAGAGGAAATATGTCAGAGGCAATGGAAACGATGGGCCAGTCTTCAACACCTAGAAGATC
ACAGAATGCAGCAGTAGGTGCACTTGTAGAGATGCTGAAATCAGCATCACCTTTGTTCTCAGATTTTCAAAATCCATCGGACTTTTCCCCAAACTCTACTATGATTTCAAGAAATGACTCCTGTCCAAATCAAACTGTTGATGACATCAATTCTTGTAGTATTTCTTCAGGCCCTTCTGTTTGTAAGAAAGCTGCTGATG
CATTACAAGAGCTTAGAAACTACATAGAAATGAAAGACAACTTGTTGAGACAGAGTGGAATCCCAGAAGGAGCCAGTCGTGCTAAGAATGTACAGTCTTCTAAACGTGAAAAGCCTAAAGGTTTCTAGTTGGGCTCTTCAAGCCCTTCTGCGCATAAGAAATCTGCTGATGCATTACAAGAGTTTAGAAACTACATAGAA
ATGAAACACTCTTTATTGTGATAAAGCGGATTTCCACTAGTAACCAGTTGTGCCAAGAATCTGCAGCCTTATAAACGTGAAGAGTCCAAAGGTTAATGGTTTGTTATTCTAGCATGCGAAGGATTTATTGTGGTTCAGGTAAAGGGATAGTGGTAATGACCTGGCATCACATTGTACAGTATGTAGGATTATCTGATGTT
GACGATGGCCTGTATAAAATGAGGCCGTTATTCTACTGATTTGTAAATATGTCGATATCAGTTCTTGAAACATGACCAGATAAGGAAAGATGTCATTTTTTCAGATATTTTGTTGAATCTTGATCATACTATTAGTAGTAGTTCAACAAATAGAGCAACGAAATCCAAGCACTTAACAAATGAAAATTTGAATTAGAGTC
TAATAGTTTCTCTGGAAAAGGTTTCTGTTATTGTTTTTCGAGTTTACATTAATAATATTATATTTTGT
>TRINITY_DN42509_c0_g1_i3 from sample A9 / Example unspliced isoform:CAAGTATACCCAGGCCAGAAGgtaaataagataagtctttacttttcattgattttttctttcctttcctggaagaaaattgcaacacaggtttttgatgttttctctccgattggattgagttatttacatcggctattatttttctttctttgtagtccatgctgcgtattaagtcaaggttttcctgctcggttgct
tcggtacatttatattttctttgtggtgtttacttgttacgcctttgcttttcattgttttatactctccttttctaaccccgtgaagacgattgttacacataggaaagaattaagaggcttgaagacgattgttacacataggaaagaattaaaaggcttttgaggttttctgtccaataggatcgagttatttacat
tggccctcatttttcattatttgtaatatgcattccatgctgcatattcctaatacaaagtcaaggcttctctgctcagttgctttggtacatttatattcctttgtgttgttcatgcttgttttgtcattttacatttaaaacccattgttctagtgttgtattaaactgatatattctgctgttttatatccttgtag
caatgtatcttgacttgtgaaagattcgttttgcttagctattgtgcttgtattatgcaatgttcattttgatgaaggagacattcttatttttagGTGGGTAAATTGGAGAGAGAGGACAGTGAATCATTAATGGGATCAAGGATCATGCACAGTGGCTCGCCACGGGTTATGGGCTCACGAAGTTCTAGCAGACGTTC
TTATAATTATGAAATTGAAGATGAAGATTTGTCTTTACCCTTTGCGTACCAGGATGATGAGAGCGATAGCTTGAGGAGCAGAACGGGCTCTTTTGATAGTAGAGGAAATATGTCAGAGGCAATGGAAACGATGGGCCAGTCTTCAACACCTAGAAGATCACAGAATGCAGCAGTAGGTGCACTTGTAGAGATGCTGAAAT
CAGCATCACCTTTGTTCTCAGATTTTCAAAATCCATCGGACTTTTCCCCAAACTCTACTATGATTTCAAGAAATGACTCCTGTCCAAATCAAACTGTTGATGACATCAATTCTTGTAGTATTTCTTCAGGCCCTTCTGTTTGTAAGAAAGCTGCTGATGCATTACAAGAGCTTAGAAACTACATAGAAATGAAAGACAAC
TTGTTGAGACAGAGTGGAATCCCAGAAGGAGCCAGTCGTGCTAAGAATGTACAGTCTTCTAAACGTGAAAAGCCTAAAGGTTTCTAGTTGGGCTCTTCAAGCCCTTCTGCGCATAAGAAATCTGCTGATGCATTACAAGAGTTTAGAAACTACATAGAAATGAAACACTCTTTATTGTGATAAAGCGGATTTCCACTAGT
AACCAGTTGTGCCAAGAATCTGCAGCCTTATAAACGTGAAGAGTCCAAAGGTTAATGGTTTGTTATTCTAGCATGCGAAGGATTTATTGTGGTTCAGGTAAAGGGATAGTGGTAATGACCTGGCATCACATTGTACAGTATGTAGGATTATCTGATGTTGACGATGGCCTGTATAAAATGAGGCCGTTATTCTACTGATT
TGTAAATATGTCGATATCAGTTCTTGAAACATGACCAGATAAGGAAAGATGTCATTTTTTCAGATATTTTGTTGAATCTTGATCATACTATTAGTAGTAGTTCAACAAATAGAGCAACGAAATCCAAGCACTTAACAAATGAAAATTTGAATTAGAGTCTAATAGTTTCTCTGGAAAAGGTTTCTGTTATTGTTTTTCGA
GTTTACATTAATAATATTATATTTTGT
Intron 5 GTAAGTTTTC ... AGGCCAGAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 85.71 | 1 | 6 | 6 |
| A2 | 100 | 0 | 4 | 0 |
| A3 | 100 | 0 | 0 | 6 |
| A4 | 75 | 2 | 6 | 6 |
| A5 | 81.82 | 1 | 9 | 0 |
| A6 | 80.95 | 4 | 16 | 18 |
| A7 | 80.77 | 5 | 21 | 21 |
| A8 | 63.64 | 8 | 12 | 16 |
| A9 | 84.62 | 2 | 11 | 11 |
| A10 | 67.35 | 8 | 15 | 18 |
>TRINITY_DN45703_c0_g1_i1 from sample A10 / Example spliced isoformCAAATTTGTTCTCTTCCTTCTTTTTAGTTGTAGATTATCGTGGCTCTGTTCGCTTTTTCTTTCTTTTTTATTATTTATTTTATGCGTTAAACCCTACCACGATCTGACAGAACTAAACTGTGGAAAGATTAGCTTTCTGAAGTTATGGGGTGGGATCGGCTCACGGCGTTTATTTGCTTTTGCTGTGGTGACTGGTTGAA
GGTTCGATTCCTGCAAAGTGGGCCGCAGGGCCGATACAGAGCAGGCTATTGCGGCGTTCGCAGTTTCATCCGTGGCAGAGTCTGTTAAAATTCCGCACCCATAAGGGCTTGTATTTTTTTAAGCTTTTTTCCTCTTTGCAAGAAGTCGCTGGTTCGAGTATCCCAGCTGATTCAATGGCAGAGTCGCCTCAGATTGAACA
GATTGTCGTGGGGTTCTTTACGAAGTGCCTCCATATAATACTAGAATCCAGGATTACCGGCCTTTCGTCGGCGTCGTCGATGGCAAAACCCTCCTCAAAGCAGTCCTCGTTCAATTTGACGCTAAGTCTAGACGAGAATGCGATTCCCAGCATAGAGCCCTGGAATCGAACCCTGACTATGGAACCTATGTTTGTGGACA
TCTTCGAGGCCGGCGCGGGCATGCCCTCCACGTCAGCGGCCGGCGGCAAAGTATTAGAGAGATGGATGGTTAATTATTCGCATGTTTCTTCATCCTCTCGCTCCAGGTTTGCCTGCGCTGCAGATATGGAACGACCAGCTGTGTACAAGAGGGCAATCATACTGCTACGCTCTGTGTATACCATGGCAAGGATGTTGCCA
GCTCACCGGAACGCAATGCGGCTGGATTACAGGATCTCTGCTTGTCCAGAGCCCCTGACACGCGGGAAGATGCACCTCCACAACTTTATCCCCGTGGAGACCCCTCGCGGTGGGTAAATTGGAGAGAGAGGACAGTGAATCATTAATGGGATCAAGGATCATGCACAGTGGCTCGCCACGGGTTATGGGCTCACGAAGTT
CTAGCAGACGTTCTTATAATTATGAAATTGAAGATGAAGATTTGTCTTTACCCTTTGCGTACCAGGATGATGAGAGCGATAGCTTGAGGAGCAGAACGGGCTCTTTTGATAGTAGAGGAAATATGTCAGAGGCAATGGAAACGATGGGCCAGTCTTCAACACCTAGAAGATCACAGAATGCAGCAGTAGGTGCACTTGTA
GAGATGCTGAAATCAGCATCACCTTTGTTCTCAGATTTTCAAAATCCATCGGACTTTTCCCCAAACTCTACTATGATTTCAAGAAATGACTCCTGTCCAAATCAAACTGTTGATGACATCAATTCTTGTAGTATTTCTTCAGGCCCTTCTGTTTGTAAGAAAGCTGCTGATGCATTACAAGAGCTTAGAAACTACATAGA
AATGAAAGACAACTTGTTGAGACAGAGTGGAATCCCAGAAGGAGCCAGTCGTGCCAAGAATGTACAGTCTTCTAAACGTGAAAAGCCTAAAGGTTTCTAGTTGGGCTCTTCAAGCCCTTCTGCGCATAAGAAATCTGCTGATGCATTACAAGAGTTTAGAAACTACATAGAAATGAAATACTCTTTATTGTGATAAAGCG
GATTTCCACCAGTAATGAGTTGTGCTAAGAATCTGCAGCCTTATAAACGTGAAGAGTCCAAAGGTTAATGGTTTGTTATTCTAGCATGCGAAGGTTTTATTGTGGTTCAGGTAAAGGGATAGTGGTAATGACCTGGCATCACATTGTACAGTATGTAGGATTATCTGATGTTGACGATGGCCTGTATAAAATGAGGCCGT
TATTCTGCTGATTTGTAAATATGTCGATATCAGTTCTTGAAACATGACCAGATAAGGGAAAGATGTCATTTTTTCAGATATTTTGTTGAATCTTGATCATACTATTAGTAGTAGTTCAACAAATAGAGCAACGAAATCTAAGCACTTAACAAATGAAAATTTGAATTAGAGTCTAATAGTTTCTCTGGAAAAGGC
>TRINITY_DN45703_c0_g1_i2 from sample A10 / Example unspliced isoform:CAAATTTGTTCTCTTCCTTCTTTTTAGTTGTAGATTATCGTGGCTCTGTTCGCTTTTTCTTTCTTTTTTATTATTTATTTTATGCGTTAAACCCTACCACGATCTGACAGAACTAAACTGTGGAAAGATTAGCTTTCTGAAGTTATGGGGTGGGATCGGCTCACGGCGTTTATTTGCTTTTGCTGTGGTGACTGGTTGAA
GGTTCGATTCCTGCAAAGTGGGCCGCAGGGCCGATACAGAGCAGGCTATTGCGGCGTTCGCAGTTTCATCCGTGGCAGAGTCTGTTAAAATTCCGCACCCATAAGGGCTTGTATTTTTTTAAGCTTTTTTCCTCTTTGCAAGAAGTCGCTGGTTCGAGTATCCCAGCTGATTCAATGGCAGAGTCGCCTCAGATTGAACA
GATTGTCGTGGGGTTCTTTACGAAGTGCCTCCATATAATACTAGAATCCAGGATTACCGGCCTTTCGTCGGCGTCGTCGATGGCAAAACCCTCCTCAAAGCAGTCCTCGTTCAATTTGACGCTAAGTCTAGACGAGAATGCGATTCCCAGCATAGAGCCCTGGAATCGAACCCTGACTATGGAACCTATGTTTGTGGACA
TCTTCGAGGCCGGCGCGGGCATGCCCTCCACGTCAGCGGCCGGCGGCAAAGTATTAGAGAGATGGATGGTTAATTATTCGCATGTTTCTTCATCCTCTCGCTCCAGGTTTGCCTGCGCTGCAGATATGGAACGACCAGCTGTGTACAAGAGGGCAATCATACTGCTACGCTCTGTGTATACCATGGCAAGGATGTTGCCA
GCTCACCGGAACGCAATGCGGCTGGATTACAGGATCTCTGCTTGTCCAGAGCCCCTGACACGCGGGAAGATGCACCTCCACAACTTTATCCCCGTGGAGACCCCTCGCGgtaagttttctatctctgtttcatatttgcctgccacgccaacagcaggaagtagaactgccaatgaaagtatctgtatgtcgacaagccc
tacacagataattgcagactatgttcagagccctgctgcctctgagaagagttctcaaggtgacgtgggtacgagtggaaaacctgggctttcatcggctccaccatcccctggatataataatgggggttttgggagatgccatagctggagtggggctctcaataaacttatgctccgctcaccatcgcaatcccctt
tgatgaataacgccagttatcgaagttctccattgaattctggaacccccccacgtcctacgaggtgccgtagcatcgaccactttacttctccttccccatcaccgcctatgcgaagtcgtcttttgcagaatgaaaatgctagcagttcagttctgctgcgagccgagagcgctcctgtaagcattccaccatgttct
agtgcaaggagccctcaaaattgggccgctgaaaatagagcctttctgccgcctcatactgctaagaccagaaatcctgttcgcacgttatctggtaattctaggcccttgtcttcaaattttccaaattctcaaggatcaaggacttctgaatgtcagacagcttttcaagtatacccaggccagaagGTGGGTAAATT
GGAGAGAGAGGACAGTGAATCATTAATGGGATCAAGGATCATGCACAGTGGCTCGCCACGGGTTATGGGCTCACGAAGTTCTAGCAGACGTTCTTATAATTATGAAATTGAAGATGAAGATTTGTCTTTACCCTTTGCGTACCAGGATGATGAGAGCGATAGCTTGAGGAGCAGAACGGGCTCTTTTGATAGTAGAGGAA
ATATGTCAGAGGCAATGGAAACGATGGGCCAGTCTTCAACACCTAGAAGATCACAGAATGCAGCAGTAGGTGCACTTGTAGAGATGCTGAAATCAGCATCACCTTTGTTCTCAGATTTTCAAAATCCATCGGACTTTTCCCCAAACTCTACTATGATTTCAAGAAATGACTCCTGTCCAAATCAAACTGTTGATGACATC
AATTCTTGTAGTATTTCTTCAGGCCCTTCTGTTTGTAAGAAAGCTGCTGATGCATTACAAGAGCTTAGAAACTACATAGAAATGAAAGACAACTTGTTGAGACAGAGTGGAATCCCAGAAGGAGCCAGTCGTGCCAAGAATGTACAGTCTTCTAAACGTGAAAAGCCTAAAGGTTTCTAGTTGGGCTCTTCAAGCCCTTC
TGCGCATAAGAAATCTGCTGATGCATTACAAGAGTTTAGAAACTACATAGAAATGAAATACTCTTTATTGTGATAAAGCGGATTTCCACCAGTAATGAGTTGTGCTAAGAATCTGCAGCCTTATAAACGTGAAGAGTCCAAAGGTTAATGGTTTGTTATTCTAGCATGCGAAGGTTTTATTGTGGTTCAGGTAAAGGGAT
AGTGGTAATGACCTGGCATCACATTGTACAGTATGTAGGATTATCTGATGTTGACGATGGCCTGTATAAAATGAGGCCGTTATTCTGCTGATTTGTAAATATGTCGATATCAGTTCTTGAAACATGACCAGATAAGGGAAAGATGTCATTTTTTCAGATATTTTGTTGAATCTTGATCATACTATTAGTAGTAGTTCAAC
AAATAGAGCAACGAAATCTAAGCACTTAACAAATGAAAATTTGAATTAGAGTCTAATAGTTTCTCTGGAAAAGGC
Intron 6 GCTTGAAGAC ... GAATTAAAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 37.93 | 9 | 4 | 7 |
| A2 | 100 | 0 | 1 | 1 |
| A3 | 16.67 | 5 | 1 | 1 |
| A4 | 33.33 | 1 | 1 | 0 |
| A5 | 55.56 | 4 | 5 | 5 |
| A6 | 44.44 | 5 | 5 | 3 |
| A7 | 41.82 | 16 | 12 | 11 |
| A8 | 15.79 | 8 | 3 | 0 |
| A9 | 37.93 | 9 | 4 | 7 |
| A10 | 27.27 | 8 | 3 | 3 |
>TRINITY_DN42509_c0_g1_i4 from sample A9 / Example spliced isoformCAAGTATACCCAGGCCAGAAGGTAAATAAGATAAGTCTTTACTTTTCATTGATTTTTTCTTTCCTTTCCTGGAAGAAAATTGCAACACAGGTTTTTGATGTTTTCTCTCCGATTGGATTGAGTTATTTACATCGGCTATTATTTTTCTTTCTTTGTAGTCCATGCTGCGTATTAAGTCAAGGTTTTCCTGCTCGGTTGCT
TCGGTACATTTATATTTTCTTTGTGGTGTTTACTTGTTACGCCTTTGCTTTTCATTGTTTTATACTCTCCTTTTCTAACCCCGTGAAGACGATTGTTACACATAGGAAAGAATTAAGAGGCTTTTGAGGTTTTCTGTCCAATAGGATCGAGTTATTTACATTGGCCCTCATTTTTCATTATTTGTAATATGCATTCCATG
CTGCATATTCCTAATACAAAGTCAAGGCTTCTCTGCTCAGTTGCTTTGGTACATTTATATTCCTTTGTGTTGTTCATGCTTGTTTTGTCATTTTACATTTAAAACCCATTGTTCTAGTGTTGTATTAAACTGATATATTCTGCTGTTTTATATCCTTGTAGCAATGTATCTTGACTTGTGAAAGATTCGTTTTGCTTAGC
TATTGTGCTTGTATTATGCAATGTTCATTTTGATGAAGGAGACATTCTTATTTTTAGGTGGGTAAATTGGAGAGAGAGGACAGTGAATCATTAATGGGATCAAGGATCATGCACAGTGGCTCGCCACGGGTTATGGGCTCACGAAGTTCTAGCAGACGTTCTTATAATTATGAAATTGAAGATGAAGATTTGTCTTTACC
CTTTGCGTACCAGGATGATGAGAGCGATAGCTTGAGGAGCAGAACGGGCTCTTTTGATAGTAGAGGAAATATGTCAGAGGCAATGGAAACGATGGGCCAGTCTTCAACACCTAGAAGATCACAGAATGCAGCAGTAGGTGCACTTGTAGAGATGCTGAAATCAGCATCACCTTTGTTCTCAGATTTTCAAAATCCATCGG
ACTTTTCCCCAAACTCTACTATGATTTCAAGAAATGACTCCTGTCCAAATCAAACTGTTGATGACATCAATTCTTGTAGTATTTCTTCAGGCCCTTCTGTTTGTAAGAAAGCTGCTGATGCATTACAAGAGCTTAGAAACTACATAGAAATGAAAGACAACTTGTTGAGACAGAGTGGAATCCCAGAAGGAGCCAGTCGT
GCTAAGAATGTACAGTCTTCTAAACGTGAAAAGCCTAAAGGTTTCTAGTTGGGCTCTTCAAGCCCTTCTGCGCATAAGAAATCTGCTGATGCATTACAAGAGTTTAGAAACTACATAGAAATGAAACACTCTTTATTGTGATAAAGCGGATTTCCACTAGTAACCAGTTGTGCCAAGAATCTGCAGCCTTATAAACGTGA
AGAGTCCAAAGGTTAATGGTTTGTTATTCTAGCATGCGAAGGATTTATTGTGGTTCAGGTAAAGGGATAGTGGTAATGACCTGGCATCACATTGTACAGTATGTAGGATTATCTGATGTTGACGATGGCCTGTATAAAATGAGGCCGTTATTCTACTGATTTGTAAATATGTCGATATCAGTTCTTGAAACATGACCAGA
TAAGGAAAGATGTCATTTTTTCAGATATTTTGTTGAATCTTGATCATACTATTAGTAGTAGTTCAACAAATAGAGCAACGAAATCCAAGCACTTAACAAATGAAAATTTGAATTAGAGTCTAATAGTTTCTCTGGAAAAGGTTTCTGTTATTGTTTTTCGAGTTTACATTAATAATATTATATTTTGT
>TRINITY_DN42509_c0_g1_i3 from sample A9 / Example unspliced isoform:CAAGTATACCCAGGCCAGAAGGTAAATAAGATAAGTCTTTACTTTTCATTGATTTTTTCTTTCCTTTCCTGGAAGAAAATTGCAACACAGGTTTTTGATGTTTTCTCTCCGATTGGATTGAGTTATTTACATCGGCTATTATTTTTCTTTCTTTGTAGTCCATGCTGCGTATTAAGTCAAGGTTTTCCTGCTCGGTTGCT
TCGGTACATTTATATTTTCTTTGTGGTGTTTACTTGTTACGCCTTTGCTTTTCATTGTTTTATACTCTCCTTTTCTAACCCCGTGAAGACGATTGTTACACATAGGAAAGAATTAAGAGgcttgaagacgattgttacacataggaaagaattaaaagGCTTTTGAGGTTTTCTGTCCAATAGGATCGAGTTATTTACAT
TGGCCCTCATTTTTCATTATTTGTAATATGCATTCCATGCTGCATATTCCTAATACAAAGTCAAGGCTTCTCTGCTCAGTTGCTTTGGTACATTTATATTCCTTTGTGTTGTTCATGCTTGTTTTGTCATTTTACATTTAAAACCCATTGTTCTAGTGTTGTATTAAACTGATATATTCTGCTGTTTTATATCCTTGTAG
CAATGTATCTTGACTTGTGAAAGATTCGTTTTGCTTAGCTATTGTGCTTGTATTATGCAATGTTCATTTTGATGAAGGAGACATTCTTATTTTTAGGTGGGTAAATTGGAGAGAGAGGACAGTGAATCATTAATGGGATCAAGGATCATGCACAGTGGCTCGCCACGGGTTATGGGCTCACGAAGTTCTAGCAGACGTTC
TTATAATTATGAAATTGAAGATGAAGATTTGTCTTTACCCTTTGCGTACCAGGATGATGAGAGCGATAGCTTGAGGAGCAGAACGGGCTCTTTTGATAGTAGAGGAAATATGTCAGAGGCAATGGAAACGATGGGCCAGTCTTCAACACCTAGAAGATCACAGAATGCAGCAGTAGGTGCACTTGTAGAGATGCTGAAAT
CAGCATCACCTTTGTTCTCAGATTTTCAAAATCCATCGGACTTTTCCCCAAACTCTACTATGATTTCAAGAAATGACTCCTGTCCAAATCAAACTGTTGATGACATCAATTCTTGTAGTATTTCTTCAGGCCCTTCTGTTTGTAAGAAAGCTGCTGATGCATTACAAGAGCTTAGAAACTACATAGAAATGAAAGACAAC
TTGTTGAGACAGAGTGGAATCCCAGAAGGAGCCAGTCGTGCTAAGAATGTACAGTCTTCTAAACGTGAAAAGCCTAAAGGTTTCTAGTTGGGCTCTTCAAGCCCTTCTGCGCATAAGAAATCTGCTGATGCATTACAAGAGTTTAGAAACTACATAGAAATGAAACACTCTTTATTGTGATAAAGCGGATTTCCACTAGT
AACCAGTTGTGCCAAGAATCTGCAGCCTTATAAACGTGAAGAGTCCAAAGGTTAATGGTTTGTTATTCTAGCATGCGAAGGATTTATTGTGGTTCAGGTAAAGGGATAGTGGTAATGACCTGGCATCACATTGTACAGTATGTAGGATTATCTGATGTTGACGATGGCCTGTATAAAATGAGGCCGTTATTCTACTGATT
TGTAAATATGTCGATATCAGTTCTTGAAACATGACCAGATAAGGAAAGATGTCATTTTTTCAGATATTTTGTTGAATCTTGATCATACTATTAGTAGTAGTTCAACAAATAGAGCAACGAAATCCAAGCACTTAACAAATGAAAATTTGAATTAGAGTCTAATAGTTTCTCTGGAAAAGGTTTCTGTTATTGTTTTTCGA
GTTTACATTAATAATATTATATTTTGT