sp|Q9SUU1|BOR7_ARATH ----> Probable boron transporter 7
Intron 1 GTTTCTCACA ... GCTTGTCTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 76 | 6 | 20 | 18 |
| A2 | 77.14 | 4 | 12 | 15 |
| A3 | 65 | 7 | 14 | 12 |
| A4 | 100 | 0 | 14 | 7 |
| A5 | 66.67 | 8 | 14 | 18 |
| A6 | -1 | 0 | 0 | 0 |
| A7 | 62.96 | 5 | 13 | 4 |
| A8 | 100 | 0 | 2 | 2 |
| A9 | 84.62 | 1 | 5 | 6 |
| A10 | 81.82 | 3 | 21 | 6 |
>TRINITY_DN109865_c0_g1_i1 from sample A3 / Example spliced isoformGCGAACAATGCCCGTGGAGCTTCCAACTGGCTCATAAAGAAAGGCAGGATCTGCCATGAAACTCTGATCTAGTGAACACTCGGCATTTGGATTCTGAAGAACATACCGAGATGGAAGAAAAACACATCAGCAGCGATCATCGTCATAACCACCACCATGATCATCATAAGCAGCAGCAAGCTCCATCAGGGACTGAGAAC
CATCATGCAAAACAGCCTCATGGTGTATGGGTTTGTCACCGGTGTGGGTGGACGTATCCTAATCCACATCCAAGTGCTAAGCACCGGAGGAACCACAGGAAGCATTGTGGCAAAATAGAGGGCTTTACGTTGATTGCTTCAGGGGACAGAGAAACTCATGGAGGTTCATCAGACGAAGAGTTGACAGATGATGAACATAA
TCCAACAGATTACCAGAAGCCTATGTCATCCGAAGAAAAGATTATTTTGCCTCAAACACAGGCATTGGCACCAACACCCGAGTTTAATGCAAGCAATCTTAATATAAATTCAAGTGAAGCTGATCCTGCAAAAGCTGGTCTGAAAAGGGGGGCTCCTGATAATGCGATTTTAAATATATCTCAGAGCACTGTTCTTGAAG
CAAAAGAAAGCAATTTCGGTCAAATTGATCAAAATCGTAAGGAGGCTACTAAATCAATTTTGGGTGATGAGGTACATGGCTTGAATTTATCTGGTACTATAGAACCGTCAGATAATTTTGAAGGACACGATTTGGTCAGTTTTGAACAAAAGTCAAACATATTTCTCAAGGAGGTGCCAGATATGGACAGCAGCCACCTC
ATCATTCGAGACATTGGGCCTCAAGAATTTCCAGTTAAAGAGTCTCATACAATGTCAGATTATCCTGAGCTGAAAAACCAGAATAACCAAACAGCTAGATTTCTGCATGTGCCAGAAGACTCTATTCCACCCAGTGTTCAAGTCCATCCAGAATCTGGTGATATAGTTGATGGACTTGGTTTCCAAATCATGAATGACAG
GGATAAACAGCACATTGGAATTGCTGGGGAGTGGCAAAATATTTTTGAGGAAGTTAAAAGACCACTTGTGAAATCACAGGATACAGGTCATACTGAACACCCGAGGACTTTCAGCATGGCAGGTACAACTCCAACGCATGTGACACAGGAGTATAACTTGGGAATTAGTCCGAAGAAAGTAGGAATTGCATCAATTTTGG
AACAAATTTCATTCAAGGGAGAAAATTCAGTTGAGTCAAAGATCAAAGTTCCTTTAGCTGAGAAAACTCTGCTGTCTGCTGACCAGAAAACCTATGAGCTATTTCAGACAAGTTGTCAAGTTTCTGGCGATACGAAACAAAATGTCTCTATTTCTGAACAAGATATGGTACATGATGTGGCATACCCTTCTGTTTGTGGC
AAAGGGTCCCTTGCAGAAAAATCTCAAGGATGTATTCTCAGTCAGAAAGAAGACCCTCAATCTTTGGCATTTGAACCTGAAACAGGGAAGTTGCTTGAACAGCCATCTTCTGCAGCCTTAATTGAGTCAATTTTTGTAGATAATGTTCATCCTGAAGTGACAAAATGCATGATCTCTTCTCAAGATAAGAGCAGTGTAGA
ACAAGTGAAACTTGAAGATTCTGACTTTTCTCCTCCAATCAGTGAAGTTTCTGAAATTCATAAAAATGGGAAATTTGAAAACGAAAGAAAGAACCCAAGTTCTGAAGGCCTTGACAAAACCTCATGTCAGAAGTTAGATTTACAGGTTTCAAGTGAACTGTTTATTTCTGATCAAGACCCAAGTTGTGCAGATAGCTTGA
CATCAGGATTTACAAAAGCAGGGGAACTGCAGTGGGTAGAAAATAATGGCATTACAAACCCGGGTATAACTGAACATGGAATAGGGTTTTTGGATACAGAGAGCAGAAAAGATGAATCCTCAAAAGGAAATATTATAATTACAGATGAGGACAATGACAGAAATACCAAAGCTACTGTAATGGCACTGGAAAAGTTTCCT
AAAACATCCCTTGAGGATGTGGTTGAGCAGAAGTCTGTAGTATCAGAATTTCTAGTACCAGATGCAAGAGATTCTGACTTGAGCTTCCAAGGTATTAATGATACAGAATCACGGGCTCCACTTTCAAGGGAAGAATCAAAACATGACAGCAATGGACAGAGTCTGGAGCAATCAGTAGTGGATAAAAGACATCAATTTAA
AGAAGAAGTTGTCCTTGACACATCCTTAGCAGTTCATCCCGCAACAACAGTAACAGTGGACAATTCTTTGCACTTGGATGTCAGCAAGAATAATCATGAGAATTCTTTTAAGTGCGCTACTGATGATGTGTGGGGAAACATAAATGAATGGACGGAGAATTTTGAGCCGGCACTATGGGAAAAACTACTAGAGAAAGATG
TCAAGGAAGCAATAAATCAGGAGACATACCAAGAACTGGGAAATGCTGGAACTTCACCTGTGAACCCATTCATTCAGCAATATAGGCTTTCTAACAAAGTGGAACCTCAAATATTTTCTGTCGAGGGACAACATGTGCAGACATCTGAGCAGCTGAACAATGGCTCTACAGAAGTAGAGAGAAAACATCCTTCAAGCACT
AAAGGAGTTGAGGAAGATCCTCTTGTTTCACAGGTTGGCTGGTTCGCTTCTTTTCCTGAAGTCACAAATGAATCTCATGAAAGAAAAGTTGATAATGAGTTAAGAACAGATGCGTCAGAGATGATTCCTGGGGCACTTGAATTGCCTCACACACATTTGAGCAACTCTCCACCAAGATCATCAAATCCTAAGCCCGAAGA
GAAAAAGAAAGGCAGCATCAAATCAATTTGGAATTTATGTGTATGCTGTTCTGGTGCTAGTTGATCTTTCTCTTGTCAATATGGTCCAGTGCAAGATAGCTTGATCAGTAGCTAAAGTTGTGGCAAGAGATGACAAAATGTCAATTTTTTTACATCTCTCTTCCAAGGAAATTGAGGCTTGTTGGTGCATTTTATTTAAT
CAAACTCAACATGGATTTAGTCATCCTGTGTTATCTGTGGTGGCATATACCATGTTTGTAATGGTGAGTCTAGCGGTGTGTATTCTTGTAGCTTGAGATATTCCATTTTTTGAGTCCATAATAGCAGCTATTTTTATTCTGTTTAACATAGCGAGCTTATAATGTGATTCCTTATGTTTTCCTTACTCTAAACTGAGTAA
ACTTC
>TRINITY_DN109865_c0_g1_i2 from sample A3 / Example unspliced isoform:GGACGACAATGACACTACAGCTAAACGGCCGGTCCGGGGCAGGGAAGCTTCGCCTTTATTGTACGTATATAAGGTAGATATTCCTCCCCGGATCCGGAGCGTCTCTCCAGTTCTGCAAACGGGTCCCCTATTTTCAGCTCAAAACTGCCAGTCAGATAAATCCAAATGCGAACACGGCCCGTGGAGCTTCCAACTGGCTC
ATAAAGgtttctcacagactttatatagccttaattatcctcatatgtcaaacaatgatatagtaatggtaccagctacaattccaatctgtgaaaacaagttcttcctctctgagactgattaataagaaaaaccagtgatcaaccttactttgttaaagctggcattgttactctaagggccctacgtgatttgaagt
ataccagatccgcttgacaattgagttatcgggtacctttccaaccctcattattttcaccaactgtttttggagtttcatggattgtgattttgtaacgcttctggttacatctgcttgatttcttatccttttccaccaattgggagagtaatttttctcattctttatccttttctatcaattgggttagacttggt
ctatacattttgtccaagctttcacttgtttttgaaatgccggaagaaacttgccatcaggtagtggtcatcctttgcattaagaagggtatctattccgtccaaatagctttagcgcctcatccctttgaacttcatgctatgaaggtgggccagatcatagcgagaattaagcctggtaatcagttttcctaattaaa
ttcatttattattatccttttatatcctttcggttagattcggtccataaaatctttcaaatgataaaaatagggaccataagttaatttttattttttgagggccaattgagttagaaagcataatagaagaatttcttctagcattgcctgctttgtcgatctagtattgatataagtcaaattgacctaagttagat
tggcagcgcttgtctagAAAGGCAGGATCTGCCATGAAACTCTGATCTAGTGAACACTCGGCATTTGGATTCTGAAGAACATACCGAGATGGAAGAAAAACACATCAGCAGCGATCATCGTCATAACCACCACCATGATCATCATAAGCAGCAGCAAGCTCCATCAGGGACTGAGAACCATCATGCAAAACAGCCTCATG
GTGTATGGGTTTGTCACCGGTGTGGGTGGACGTATCCTAATCCACATCCAAGTGCTAAGCACCGGAGGAACCACAGGAAGCATTGTGGCAAAATAGAGGGCTTTACGTTGATTGCTTCAGGGGACAGAGAAACTCATGGAGGTTCATCAGACGAAGAGTTGACAGATGATGAACATAATCCAACAGATTACCAGAAGCCT
ATGTCATCCGAAGAAAAGATTATTTTGCCTCAAACACAGGCATTGGCACCAACACCCGAGTTTAATGCAAGCAATCTTAATATAAATTCAAGTGAAGCTGATCCTGCAAAAGCTGGTCTGAAAAGGGGGGCTCCTGATAATGCGATTTTAAATATATCTCAGAGCACTGTTCTTGAAGCAAAAGAAAGCAATTTCGGTCA
AATTGATCAAAATCGTAAGGAGGCTACTAAATCAATTTTGGGTGATGAGGTACATGGCTTGAATTTATCTGGTACTATAGAACCGTCAGATAATTTTGAAGGACACGATTTGGTCAGTTTTGAACAAAAGTCAAACATATTTCTCAAGGAGGTGCCAGATATGGACAGCAGCCACCTCATCATTCGAGACATTGGGCCTC
AAGAATTTCCAGTTAAAGAGTCTCATACAATGTCAGATTATCCTGAGCTGAAAAACCAGAATAACCAAACAGCTAGATTTCTGCATGTGCCAGAAGACTCTATTCCACCCAGTGTTCAAGTCCATCCAGAATCTGGTGATATAGTTGATGGACTTGGTTTCCAAATCATGAATGACAGGGATAAACAGCACATTGGAATT
GCTGGGGAGTGGCAAAATATTTTTGAGGAAGTTAAAAGACCACTTGTGAAATCACAGGATACAGGTCATACTGAACACCCGAGGACTTTCAGCATGGCAGGTACAACTCCAACGCATGTGACACAGGAGTATAACTTGGGAATTAGTCCGAAGAAAGTAGGAATTGCATCAATTTTGGAACAAATTTCATTCAAGGGAGA
AAATTCAGTTGAGTCAAAGATCAAAGTTCCTTTAGCTGAGAAAACTCTGCTGTCTGCTGACCAGAAAACCTATGAGCTATTTCAGACAAGTTGTCAAGTTTCTGGCGATACGAAACAAAATGTCTCTATTTCTGAACAAGATATGGTACATGATGTGGCATACCCTTCTGTTTGTGGCAAAGGGTCCCTTGCAGAAAAAT
CTCAAGGATGTATTCTCAGTCAGAAAGAAGACCCTCAATCTTTGGCATTTGAACCTGAAACAGGGAAGTTGCTTGAACAGCCATCTTCTGCAGCCTTAATTGAGTCAATTTTTGTAGATAATGTTCATCCTGAAGTGACAAAATGCATGATCTCTTCTCAAGATAAGAGCAGTGTAGAACAAGTGAAACTTGAAGATTCT
GACTTTTCTCCTCCAATCAGTGAAGTTTCTGAAATTCATAAAAATGGGAAATTTGAAAACGAAAGAAAGAACCCAAGTTCTGAAGGCCTTGACAAAACCTCATGTCAGAAGTTAGATTTACAGGTTTCAAGTGAACTGTTTATTTCTGATCAAGACCCAAGTTGTGCAGATAGCTTGACATCAGGATTTACAAAAGCAGG
GGAACTGCAGTGGGTAGAAAATAATGGCATTACAAACCCGGGTATAACTGAACATGGAATAGGGTTTTTGGATACAGAGAGCAGAAAAGATGAATCCTCAAAAGGAAATATTATAATTACAGATGAGGACAATGACAGAAATACCAAAGCTACTGTAATGGCACTGGAAAAGTTTCCTAAAACATCCCTTGAGGATGTGG
TTGAGCAGAAGTCTGTAGTATCAGAATTTCTAGTACCAGATGCAAGAGATTCTGACTTGAGCTTCCAAGGTATTAATGATACAGAATCACGGGCTCCACTTTCAAGGGAAGAATCAAAACATGACAGCAATGGACAGAGTCTGGAGCAATCAGTAGTGGATAAAAGACATCAATTTAAAGAAGAAGTTGTCCTTGACACA
TCCTTAGCAGTTCATCCCGCAACAACAGTAACAGTGGACAATTCTTTGCACTTGGATGTCAGCAAGAATAATCATGAGAATTCTTTTAAGTGCGCTACTGATGATGTGTGGGGAAACATAAATGAATGGACGGAGAATTTTGAGCCGGCACTATGGGAAAAACTACTAGAGAAAGATGTCAAGGAAGCAATAAATCAGGA
GACATACCAAGAACTGGGAAATGCTGGAACTTCACCTGTGAACCCATTCATTCAGCAATATAGGCTTTCTAACAAAGTGGAACCTCAAATATTTTCTGTCGAGGGACAACATGTGCAGACATCTGAGCAGCTGAACAATGGCTCTACAGAAGTAGAGAGAAAACATCCTTCAAGCACTAAAGGAGTTGAGGAAGATCCTC
TTGTTTCACAGGTTGGCTGGTTCGCTTCTTTTCCTGAAGTCACAAATGAATCTCATGAAAGAAAAGTTGATAATGAGTTAAGAACAGATGCGTCAGAGATGATTCCTGGGGCACTTGAATTGCCTCACACACATTTGAGCAACTCTCCACCAAGATCATCAAATCCTAAGCCCGAAGAGAAAAAGAAAGGCAGCATCAAA
TCAATTTGGAATTTATGTGTATGCTGTTCTGGTGCTAGTTGATCTTTCTCTTGTCAATATGGTCCAGTGCAAGATAGCTTGATCAGTAGCTAAAGTTGTGGCAAGAGATGACAAAATGTCAATTTTTTTACATCTCTCTTCCAAGGAAATTGAGGCTTGTTGGTGCATTTTATTTAATCAAACTCAACATGGATTTAGTC
ATCCTGTGTTATCTGTGGTGGCATATACCATGTTTGTAATGGTGAGTCTAGCGGTGTGTATTCTTGTAGCTTGAGATATTCCATTTTTTGAGTCCATAATAGCAGCTATTTTTATTCTGTTTAACATAGCGAGCTTATAATGTGATTCCTTATGTTTTCCTTACTCTAAACTGAGTAAACTTC
Intron 2 GCATGTGCAC ... GTGTTTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 63.16 | 7 | 12 | 12 |
| A2 | 52.38 | 5 | 6 | 5 |
| A3 | 43.75 | 9 | 7 | 7 |
| A4 | 55 | 9 | 14 | 8 |
| A5 | 55.56 | 4 | 2 | 8 |
| A6 | 90.91 | 1 | 10 | 10 |
| A7 | 68.42 | 3 | 10 | 3 |
| A8 | 45.45 | 3 | 0 | 5 |
| A9 | 33.33 | 8 | 5 | 3 |
| A10 | 52.94 | 8 | 5 | 13 |
>TRINITY_DN45360_c0_g1_i9 from sample A7 / Example spliced isoformCACAATCAGGTAAAAACGCATACACCAGAGACAATTCGCGGATTCAAGATAATTAAACCGTCAGGAGTTTTCTCGTTTTCTTCACTCCAATTATCCCAATCGATGTGACCAAGAACATCTATTTTCATGACCAGGGCTTGTGTGTGGACGATGTTGCTTCTATGCCTTCTAGTTATTTTCGGTGCCTGTTCAATCGTCAA
CAAGAATAGTTGGGGAGCTATTTGGCATGTTGATTGTTTTCTTGTTCATTCATGAAGGGAGCTATCAAGGGTTTGATAGATGAATATCATATGCCCTAAAATGAGAACCCCTATGCCGATCATTTCAAATTTCCTTGTGGTTTCACAAATGGGTTATTTGGAAGTGTTTTATCTTTTGGTCTACTACTGGCAACCTTAAA
AGAAAAAGGGCTTGATCATGGCGATATGGCATTGGTAGAGTTTCTTTCTTATTGCTAATTTAGAGTCTATGATGATGATAACGTTGCTGCCATATGTTAATCTAATGGATAAATTTGTCAACAGCTTGGTTGAGAAGTTTTTGTGCAGATTATGGTGTACCCCTGATGATTGTGGTATGGAAAACTATCTCATATAGTGC
TGGAATTCCTAGAAGACTTTCTAGTCCTAATCCCTAGTCTCCTGGAGCATCATCCAATTGTGCAGTAATTCTTTAGGAGAATTGTGAGAATTGAGAACCTTACTATTTTTTTTCTTTATTTAATGAAGTATTTGATTATGATCTCTTTAAAGTCTGTCACTGATGACATTAAATTGGAAATGTTAGTAGGATATGCACAA
AGTTCCAACCCTCTACATTC
>TRINITY_DN45360_c0_g1_i2 from sample A7 / Example unspliced isoform:CACAATCAGGTAAAAACGCATACACCAGAGACAATTCGCGGATTCAAGATAATTAAACCGTCAGGAGTTTTCTCGTTTTCTTCACTCCAATTATCCCAATCGATGTGACCAAGAACATCTATTTTCATGACCAGGGCTTGTGTGTGGACGATGTTGCTTCTATGCCTTCTAGTTATTTTCGGTGCCTGTTCAATCGTCAA
CAAGAATAGTTGGGGAGCTATTTGGCATGTTGATTGTTTTCTTGTTCATTCATGAAGGGAGCTATCAAGgcatgtgcacttaccattcctatatctggggaccaagttttcaatattttactgaaattttgtattgaaagaaccccgttgaaattgtgttttcagGGTTTGATAGATGAATATCATATGCCCTAAAATGA
GAACCCCTATGCCGATCATTTCAAATTTCCTTGTGGTTTCACAAATGGGTTATTTGGAAGTGTTTTATCTTTTGGTCTACTACTGGCAACCTTAAAAGAAAAAGGGCTTGATCATGGCGATATGGCATTGGTAGAGTTTCTTTCTTATTGCTAATTTAGAGTCTATGATGATGATAACGTTGCTGCCATATGTTAATCTA
ATGGATAAATTTGTCAACAGCTTGGTTGAGAAGTTTTTGTGCAGATTATGGTGTACCCCTGATGATTGTGGTATGGAAAACTATCTCATATAGTGCTGGAATTCCTAGAAGACTTTCTAGTCCTAATCCCTAGTCTCCTGGAGCATCATCCAATTGTGCAGTAATTCTTTAGGAGAATTGTGAGAATTGAGAACCTTACT
ATTTTTTTTCTTTATTTAATGAAGTATTTGATTATGATCTCTTTAAAGTCTGTCACTGATGACATTAAATTGGAAATGTTAGTAGGATATGCACAAAGTTCCAACCCTCTACATTC
Intron 3 GTAATCAGTT ... AGATTGGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 48.15 | 14 | 11 | 15 |
| A2 | 54.43 | 10.3 | 9.7 | 15 |
| A3 | 64.83 | 7.3 | 17 | 10 |
| A4 | 75 | 2 | 4 | 8 |
| A5 | 48.68 | 13 | 5.7 | 19 |
| A6 | -1 | 0 | 0 | 0 |
| A7 | 37.5 | 5 | 3 | 3 |
| A8 | 91.67 | 0.3 | 4 | 2 |
| A9 | 52.94 | 4 | 3 | 6 |
| A10 | 72.22 | 2.3 | 7 | 5 |
>TRINITY_DN45360_c0_g1_i3 from sample A7 / Example spliced isoformCATAATTAAAATTACTGGACGACAATGACACTACAGCTAAACGGCCGGTCCGGGGCAGGGAAGCTTCGCCTTTATTGTACGTATATAAGGTAGATATTCCTCCCCGGATCCGGAGCGTCTCTCCAGTTCTGCAAACGGGTCCCCTATTTTCAGCTCAAAACTGCCAGTCAGATAAATCCAAATGCGAACACGGCCCGTGG
AGCTTCCAACTGGCTCATAAAGGTTTCTCACAGACTTTATATAGCCTTAATTATCCTCATATGTCAAACAATGATATAGTAATGGTACCAGCTACAATTCCAATCTGTGAAAACAAGTTCTTCCTCTCTGAGACTGATTAATAAGAAAAACCAGTGATCAACCTTGCTTTGTTAAAGCTGGCATTGTTACTCTAAGGGCC
CTACGTGATTTGAAGTATACCAGATCCGCTTGACAATTGAGTTATCGGGTAGTGGTCATCCTTTGCATTAAGAAGGGTATCTATTCCGTCCAAATAGCTTTAGCGCCTCATCCCTTTGAACTTCATGCTATGAAGGTGGGCCAGATCATAGCGAGAATTAAGCCTGCGCTTGTCTAGAAAGGCAGGATCTGCCATGAAAC
TCTGATCTAGTGAACACTCGGCATTTGGATTCTGAAGAACATACCGAGATGGAAGAAAAACACATCAGCAGCGATCATCGTCATAACCACCACCATGATCATCATAAGCAGCAGCAAGCTCCATCAGGGACTGAGAACCATCATGCAAAACAGCCTCATGGTGTATGGGTTTGTCACCGGTGTGGGTGGACGTATCCTAA
TCCACATCCAAGTGCTAAGCACCGGAGGAACCACAGGAAGCATTGTGGCAAAATAGAGGGCTTTACGTTGATTGCTTCAGGGGACAGAGAAACTCATGGAGGTTCATCAGACGAAGAGTTGACAGATGATGAACATAATCCAACAGATTACCAGAAGCCTATGTCATCCGAAGAAAAGATTATTTTGCCTCAAACACAGG
CATTGGCACCAACACCCGAGTTTAATGCAAGCAATCTTAATATAAATTCAAGTGAAGCTGATCCTGCAAAAGCTGGTCTGAAAAGGGGGGCTCCTGATAATGCGATTTTAAATATATCTCAGAGCACTGTTCTTGAAGCAAAAGAAAGCAATTTCGGTCAAATTGATCAAAATCGTAAGGAGGCTACTAAATCAATTTTG
GGTGATGAGGTACATGGCTTGAATTTATCTGGTACTATAGAACCGTCAGATAATTTTGAAGGACACGATTTGGTCAGTTTTGAACAAAAGTCAAACATATTTCTCAAGGAGGTGCCAGATATGGACAGCAGCCACCTCATCATTCGAGACATTGGGCCTCAAGAATTTCCAGTTAAAGAGTCTCATACAATGTCAGATTA
TCCTGAGCTGAAAAACCAGAATAACCAAACAGCTAGATTTCTGCATGTGCCAGAAGACTCTATTCCACCCAGTGTTCAAGTCCATCCAGAATCTGGTGATATAGTTGATGGACTTGGTTTCCAAATCATGAATGACAGGGATAAACAGCACATTGGAATTGCTGGGGAGTGGCAAAATATTTTTGAGGAAGTTAAAAGAC
CACTTGTGAAATCACAGGATACAGGTCATACTGAACACCCGAGGACTTTCAGCATGGCAGGTACAACTCCAATGCATGTGACACAGGAGTATAACTTGGGAATTAGTCCGAAGAAAGTAGGAATTGCATCAATTTTGGAACAAATTTCATTCAAGGGAGAAAATTCAGTTGAGTCAAAGATCAAAGTTCCTTTAGCTGAG
AAAACTCTGCTGTCTGCTGACCAGAAAACCTATGAGCTATTTCAGACAAGTTGTCAAGTTTCTGGCGATACGAAACAAAATGTCTCTATTTCTGAACAAGATATGGTACATGATGTGGCATACCCTTCTGTTTGTGGCAAAGGGTCCCTTGCAGAAAAATCTCAAGGATGTATTCTCAGTCAGAAAGAAGACCCTCAATC
TTTGGCATTTGAACCTGAAACAGGGAAGTTGCTTGAACAGCCATCTTCTGCAGCCTTAATTGAGTCAATTTTTGTAGATAATGTTCATCCTGAAGTGACAAAATGCATGATCTCTTCTCAAGATAAGAGCAGTGTAGAACAAGTGAAACTTGAAGATTCTGACTTTTCTCCTCCAATCAGTGAAGTTTCTGAAATTCATA
AAAATGGGAAATTCGAAAACGAAAGAAAGAACCCAAGTTCTGAAGGCCTTGACAAAACCTCATGTCAGAAGTTAGATTTACAGGTTTCAAGTGAACTGTTTATTTCTGATCAAGACCCAAGTTGTGCAGATAGCTTGACATCAGGATTTACAAAAGCAGGGGAATTGCAGTGGGTAGAAAATAATGGCATTACAAACCCG
GGTATAACTGAACATGGAATAGGGTTTTTGGATACAGAGAGCAGAAAAGATGAATCCTCAAAAGGAAATATTATAATTACAGATGAGGACAATGACAGAAATACCAAAGCTACTGTAATGGCACTGGAAAAGTTTCCTAAAACATCCCTTGAGGATGTGGTTGAGCAGAAGTCTGTAGTATCAGAATTTCTAGTACCAGA
TGCAAGAGATTCTGACTTGAGCTTCCAAGGTATTAATGATACAGAATCACGGGCTCCACTTTCAAGGGAAGAATCAAAACATGACAGCAATGGACAGAGTCTGGAGCAATCAGTAGTGGATAAAAGACATCAATTTAAAGAAGAAGTTGTCCTTGACACATCCTTAGCAGTTCATCCCGCAACAACAGTAACAGTGGACA
ATTCTTTGCACTTGGATGTCAGCAAGAATAATCATGAGAATTCTTTTAAGTGCGCTACTGATGATGTGTGGGGAAACATAAATGAATGGACGGAGAATTTTGAGCCGGCACTATGGGAAAAACTACTAGAGAAAGATGTCAAGGAAGCAATAAATCAGGAGACATACCAAGAACTGGGAAATGCTGGAACTTCACCTGTG
AACCCATTCATTCAGCAATATAGGCTTTCTAACAAAGTGGAACCTCAAATATTTTCTGTCGAGGGACAACATGTGCAGACATCTGAGCAGCTGAACAATGGCTCTACAGAAGTAGAGAGAAAACATCCTTCAAGCACTAAAGGAGTTGAGGAAGATCCTCTTGTTTCACAGGTTGGCTGGTTCGCTTCTTTTCCTGAAGT
CACAAATGAATCTCATGAAAGAAAAGTTGATAATGAGTTAAGAACAGATGCGTCAGAGATGATTCCTGGGGCACTTGAATTGCCTCACACACATTTGAGCAACTCTCCACCAAGATCATCAAATCCTAAGCCCGAAGAGAAAAAGAAAGGCAGCATCAAATCAATTTGGAATTTATGTGTATGCTGTTCTGGTGCTAGTT
GATCTTTCTCTTGTCAATATGGTCCAGTGCAAGATAGCTTGATCAGTAGCTAAAGTTGTGGCAAGAGATGACAAAATGTCAATTTTTTTACATCTCTCTTCCAAGGAAATTGAGGCTTGTTGGTGCATTTTATTTAATCAAACTCAACATGGATTTAGTCATCCTGTGTTATCTGTGGTGGCATATACCATGTTTGTAAT
GGTGAGTCTAGCGGTGTGTATTCTTGTAGCTTGAGATATTCCATTTTTTGAGTCCATAATAGCAGCTATTTTTATTCTGTTTAACATAGCGAGCTTATAATGTGATTCCTTATGTTTTCCTTACTCTAAACTGAGTAAACTTCTCAGATATTTGAATATAGAGGCTACAAGAAAAGCTTTCAATATTCTAGAATCTAAAT
CCATATTCAGTGACGTCTGCTGTACAAATCATAAG
>TRINITY_DN45360_c0_g1_i8 from sample A7 / Example unspliced isoform:CATAATTAAAATTACTGGACGACAATGACACTACAGCTAAACGGCCGGTCCGGGGCAGGGAAGCTTCGCCTTTATTGTACGTATATAAGGTAGATATTCCTCCCCGGATCCGGAGCGTCTCTCCAGTTCTGCAAACGGGTCCACCTATTTTCAGCTCAAAACTGCCAGTCAGATAAATCCAAATGCGAACAATGCCCGTG
GAGCTTCCAACTGGCTCATAAAGGTTTCTCACAGACTTTATATAGCCTTAATTATCCTCATATGTCAAACAATGATATAGTAATGGTACCAGCTACAATTCCAATCTGTGAAAACAAGTTCTTCCTCTCTGAGACTGATTAATAAGAAAAACCAGTGATCAACCTTGCTTTGTTAAAGCTGGCATTGTTACTCTAAGGGC
CCTACGTGATTTGAAGTATACCAGATCCGCTTGACAATTGAGTTATCGGGTACCTTTCCAACCCTCATTATTTTCACCAACTGTTTTTGGAGTTTCATGGATTGTGATTTTGTAACGCTTCTGGTTACATCTGCTTGATTTCTTATCCTTTTCCACCAATTGGGAGAGTAATTTTTCTCATTCTTTATCCTTTTCTATCA
ATTGGGTTAGACTTGGTCTATACATTTTGTCCAAGCTTTCACTTGTTTTTGAAATGCCGGAAGAAACTTGCCATCAGGTAGTGGTCATCCTTTGCATTAAGAAGGTATCTATTCCGTCCAAATAGCTTTAGCGCCTCATCCCTTTGAACTTCATGCTATGAAGGTGGGCCAGATCATAGCGAGAATTAAGCCTGgtaatc
agttttcctaattaaattcatttattattatccttttatatcctttcggttagattcggtccataaaatctttcaaatgataaaaatagggaccataagttaatttttattttttgagggccaattgagttagaaagcataatagaagaatttcttctagcattgcctgctttgtcgatctagtattgatataagtcaaa
ttgacctaagttagattggcagCGCTTGTCTAGAAAGGCAGGATCTGCCATGAAACTCTGATCTAGTGAACACTCGGCATTTGGATTCTGAAGAACATACCGAGATGGAAGAAAAACACATCAGCAGCGATCATCGTCATAACCACCACCATGATCATCATAAGCAGCAGCAAGCTCCATCAGGGACTGAGAACCATCAT
GCAAAACAGCCTCATGGTGTATGGGTTTGTCACCGGTGTGGGTGGACGTATCCTAATCCACATCCAAGTGCTAAGCACCGGAGGAACCACAGGAAGCATTGTGGCAAAATAGAGGGCTTTACGTTGATTGCTTCAGGGGACAGAGAAACTCATGGAGGTTCATCAGACGAAGAGTTGACAGATGATGAACATAATCCAAC
AGATTACCAGAAGCCTATGTCATCCGAAGAAAAGATTATTTTGCCTCAAACACAGGCATTGGCACCAACACCCGAGTTTAATGCAAGCAATCTTAATATAAATTCAAGTGAAGCTGATCCTGCAAAAGCTGGTCTGAAAAGGGGGGCTCCTGATAATGCGATTTTAAATATATCTCAGAGCACTGTTCTTGAAGCAAAAG
AAAGCAATTTCGGTCAAATTGATCAAAATCGTAAGGAGGCTACTAAATCAATTTTGGGTGATGAGGTACATGGCTTGAATTTATCTGGTACTATAGAACCGTCAGATAATTTTGAAGGACACGATTTGGTCAGTTTTGAACAAAAGTCAAACATATTTCTCAAGGAGGTGCCAGATATGGACAGCAGCCACCTCATCATT
CGAGACATTGGGCCTCAAGAATTTCCAGTTAAAGAGTCTCATACAATGTCAGATTATCCTGAGCTGAAAAACCAGAATAACCAAACAGCTAGATTTCTGCATGTGCCAGAAGACTCTATTCCACCCAGTGTTCAAGTCCATCCAGAATCTGGTGATATAGTTGATGGACTTGGTTTCCAAATCATGAATGACAGGGATAA
ACAGCACATTGGAATTGCTGGGGAGTGGCAAAATATTTTTGAGGAAGTTAAAAGACCACTTGTGAAATCACAGGATACAGGTCATACTGAACACCCGAGGACTTTCAGCATGGCAGGTACAACTCCAATGCATGTGACACAGGAGTATAACTTGGGAATTAGTCCGAAGAAAGTAGGAATTGCATCAATTTTGGAACAAA
TTTCATTCAAGGGAGAAAATTCAGTTGAGTCAAAGATCAAAGTTCCTTTAGCTGAGAAAACTCTGCTGTCTGCTGACCAGAAAACCTATGAGCTATTTCAGACAAGTTGTCAAGTTTCTGGCGATACGAAACAAAATGTCTCTATTTCTGAACAAGATATGGTACATGATGTGGCATACCCTTCTGTTTGTGGCAAAGGG
TCCCTTGCAGAAAAATCTCAAGGATGTATTCTCAGTCAGAAAGAAGACCCTCAATCTTTGGCATTTGAACCTGAAACAGGGAAGTTGCTTGAACAGCCATCTTCTGCAGCCTTAATTGAGTCAATTTTTGTAGATAATGTTCATCCTGAAGTGACAAAATGCATGATCTCTTCTCAAGATAAGAGCAGTGTAGAACAAGT
GAAACTTGAAGATTCTGACTTTTCTCCTCCAATCAGTGAAGTTTCTGAAATTCATAAAAATGGGAAATTCGAAAACGAAAGAAAGAACCCAAGTTCTGAAGGCCTTGACAAAACCTCATGTCAGAAGTTAGATTTACAGGTTTCAAGTGAACTGTTTATTTCTGATCAAGACCCAAGTTGTGCAGATAGCTTGACATCAG
GATTTACAAAAGCAGGGGAATTGCAGTGGGTAGAAAATAATGGCATTACAAACCCGGGTATAACTGAACATGGAATAGGGTTTTTGGATACAGAGAGCAGAAAAGATGAATCCTCAAAAGGAAATATTATAATTACAGATGAGGACAATGACAGAAATACCAAAGCTACTGTAATGGCACTGGAAAAGTTTCCTAAAACA
TCCCTTGAGGATGTGGTTGAGCAGAAGTCTGTAGTATCAGAATTTCTAGTACCAGATGCAAGAGATTCTGACTTGAGCTTCCAAGGTATTAATGATACAGAATCACGGGCTCCACTTTCAAGGGAAGAATCAAAACATGACAGCAATGGACAGAGTCTGGAGCAATCAGTAGTGGATAAAAGACATCAATTTAAAGAAGA
AGTTGTCCTTGACACATCCTTAGCAGTTCATCCCGCAACAACAGTAACAGTGGACAATTCTTTGCACTTGGATGTCAGCAAGAATAATCATGAGAATTCTTTTAAGTGCGCTACTGATGATGTGTGGGGAAACATAAATGAATGGACGGAGAATTTTGAGCCGGCACTATGGGAAAAACTACTAGAGAAAGATGTCAAGG
AAGCAATAAATCAGGAGACATACCAAGAACTGGGAAATGCTGGAACTTCACCTGTGAACCCATTCATTCAGCAATATAGGCTTTCTAACAAAGTGGAACCTCAAATATTTTCTGTCGAGGGACAACATGTGCAGACATCTGAGCAGCTGAACAATGGCTCTACAGAAGTAGAGAGAAAACATCCTTCAAGCACTAAAGGA
GTTGAGGAAGATCCTCTTGTTTCACAGGTTGGCTGGTTCGCTTCTTTTCCTGAAGTCACAAATGAATCTCATGAAAGAAAAGTTGATAATGAGTTAAGAACAGATGCGTCAGAGATGATTCCTGGGGCACTTGAATTGCCTCACACACATTTGAGCAACTCTCCACCAAGATCATCAAATCCTAAGCCCGAAGAGAAAAA
GAAAGGCAGCATCAAATCAATTTGGAATTTATGTGTATGCTGTTCTGGTGCTAGTTGATCTTTCTCTTGTCAATATGGTCCAGTGCAAGATAGCTTGATCAGTAGCTAAAGTTGTGGCAAGAGATGACAAAATGTCAATTTTTTTACATCTCTCTTCCAAGGAAATTGAGGCTTGTTGGTGCATTTTATTTAATCAAACT
CAACATGGATTTAGTCATCCTGTGTTATCTGTGGTGGCATATACCATGTTTGTAATGGTGAGTCTAGCGGTGTGTATTCTTGTAGCTTGAGATATTCCATTTTTTGAGTCCATAATAGCAGCTATTTTTATTCTGTTTAACATAGCGAGCTTATAATGTGATTCCTTATGTTTTCCTTACTCTAAACTGAGTAAACTTCT
CAGATATTTGAATATAGAGGCTACAAGAAAAGCTTTCAATATTCTAGAATCTAAATCCATATTCAGTGACGTCTGCTGTACAAATCATAAG
Intron 4 GTTTCTCACA ... GTCTAGAAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 73.91 | 6 | 20 | 14 |
| A2 | 73.33 | 4 | 12 | 10 |
| A3 | 62.16 | 7 | 14 | 9 |
| A4 | 100 | 0 | 14 | 2 |
| A5 | 61.9 | 8 | 14 | 12 |
| A6 | -1 | 0 | 0 | 0 |
| A7 | 70.37 | 4 | 13 | 6 |
| A8 | 50 | 1 | 2 | 0 |
| A9 | 80 | 1 | 5 | 3 |
| A10 | 64.1 | 7 | 21 | 4 |
>TRINITY_DN42175_c0_g4_i2 from sample A9 / Example spliced isoformCGCCTTTATTGTACGTATATAAGGTAGATATTCCTCCCCGGATCTGGAGCGTCTCTCCAGTTCTGCAAACGGGTCCCCTATTTTCAGCTCAAAACTGCCAGTCAGATAAATCCAAATGCGAACACGGCCCGTGGAGCTTCCAACTGGCTCATAAAGGCAGGATCTGCCATGAAACTCTGATCTAGTGAACACTCGGCATT
TGGATTCTGAAGAACATACCGAGATGGAAGAAAAACACATCAGCAGCGATCATCGTCATAACCACCACCATGATCATCATAAGCAGCAGCAAGCTCCATCAGGGACTGAGAACCATCATGCAAAACAGCCTCATGGTGTATGGGTTTGTCACCGGTGTGGGTGGACGTATCCTAATCCACATCCAAGTGCTAAGCACCGG
AGGAACCACAGGAAGCATTGTGGCAAAATAGAGGGCTTTACGTTGATTGCTTCAGAGGACAGAGAAACTCATGGAGGTTCATCAGACGAAGAGTTGACAGATGATGAACATAATCCAACAGATTACCAGAAGCCTATGTCATCCGAAGAAAAGATTATTTTGCCTCAAACACAGGCATTGGCACCAACACCCGAGTTTAA
TGCAAGCAATCTTAATATAAATTCAAGTGAAGCTGATCCTGCAAAAGCTGGTCTGAAAAGGGGGGCTCCTGATAATGCGATTTTAAATATATCTCAGAGCACTGTTCTTGAAGCAAAAGAAAGCAATTTCGGTCAAATTGATCAAAATCGTAAGGAGGCTACTAAATCAATTTTGGGTGATGAGGTACATGGCTTGAATT
TATCTGGTACTATAGAACCGTCAGATAATTTTGAAGGACACGATTTGGTCAGTTTTGAACAAAAGTCAAACATATTTCTCAAGGAGGTGCCAGATATGGACAGCAGCCACCTCATCATTCGAGACATTGGGCCTCAAGAATTTCCAGTTAAAGAGTCTCATACAATGTCAGATTATCCTGAGCTGAAAAACCAGAATAAC
CAAACAGCTAGATTTCTGCATGTGCCAGAAGACTCTATTCCACCCAGTGTTCAAGTCCATCCAGAATCTGGTGATATAGTTGATGGACTTGGTTTCCAAATCATGAATGACAGGGATAAACAGCACATTGGAATTGCTGGGGAGTGGCAAAATATTTTTGAGGAAGTTAAAAGACCACTTGTGAAATCACAGGATACAGG
TCATACTGAACACCCGAGGACTTTCAGCATGGCAGGTACAACTCCAATGCATGTGACACAGGAGTATAACTTGGGAATTAGTCCGAAGAAAGTAGGAATTGCATCAATTTTGGAACAAATTTCATTCAAGGGAGAAAATTCAGTTGAGTCAAAGATCAAAGTTCCTTTAGCTGAGAAAACTCTGCTGTCTGCTGACCAGA
AAACCTATGAGCTATTTCAGACAAGTTGTCAAGTTTCTGGCGATACGAAACAAAATGTCTCTATTTCTGAACAAGATATGGTACATGATGTGGCATACCCTTCTGTTTGTGGCAAAGGGTCCCTTGCAGAAAAATCTCAAGGATGTATTCTCAGTCAGAAAGAAGACCCTCAATCTTTGGCATTTGAACCTGAAACAGGG
AAGTTGCTTGAACAGCCATCTTCTGCAGCCTTAATTGAGTCAATTTTTGTAGATAATGTTCATCCTGAAGTGACAAAATGCATGATCTCTTCTCAAGATAAGAGCAGTGTAGAACAAGTGAAACTTGAAGATTCTGACTTTTCTCCTCCAATCAGTGAAGTTTCTGAAATTCATAAAAATGGGAAATTCGAAAACGAAAG
AAAGAACCCAAGTTCTGAAGGCCTTGACAAAACCTCATGTCAGAAGTTAGATTTACAGGTTTCAAGTGAACTGTTTATTTCTGATCAAGACCCAAGTTGTGCAGATAGCTTGACATCAGGATTTACAAAAGCAGGGGAATTGCAGTGGGTAGAAAATAATGGCATTACAAACCCGGGTATAACTGAACATGGAATAGGGT
TTTTGGATACAGAGAGCAGAAAAGATGAATCCTCAAAAGGAAATATTATAATTACAGATGAGGACAATGACAGAAATACCAAAGCTACTGTAATGGCACTGGAAAAGTTTCCTAAAACATCCCTTGAGGATGTGGTTGAGCAGAAGTCTGTAGTATCAGAATTTCTAGTACCAGATGCAAGAGATTCTGACTTGAGCTTC
CAAGGTATTAATGATACAGAATCACGGGCTCCACTTTCAAGGGAAGAATCAAAACATGACAGCAATGGACAGAGTCTGGAGCAATCAGTAGTGGATAAAAGACATCAATTTAAAGAAGAAGTTGTCCTTGACACATCCTTAGCAGTTCATCCCGCAACAACAGTAACAGTGGACAATTCTTTGCACTTGGATGTCAGCAA
GAATAATCATGAGAATTCTTTTAAGTGCGCTACTGATGATGTGTGGGGAAACATAAATGAATGGACGGAGAATTTTGAGCCGGCACTATGGGAAAAACTACTAGAGAAAGATGTCAAGGAAGCAATAAATCAGGAGACATACCAAGAACTGGGAAATGCTGGAACTTCACCTGTGAACCCATTCATTCAGCAATATAGGC
TTTCTAACAAAGTGGAACCTCAAATATTTTCTGTCGAGGGACAACATGTGCAGACATCTGAGCAGCTGAACAATGGCTCTACAGAAGTAGAGAGAAAACATCCTTCAAGCACTAAAGGAGTTGAGGAAGATCCTCTTGTTTCACAGGTTGGCTGGTTCGCTTCTTTTCCTGAAGTCACAAATGAATCTCATGAAAGAAAA
GTTGATAATGAGTTAAGAACAGATGCGTCAGAGATGATTCCTGGGGCACTTGAATTGCCTCACACACATTTGAGCAACTCTCCACCAAGATCATCAAATCCTAAGCCCGAAGAGAAAAAGAAAGGCAGCATCAAATCAATTTGGAATTTATGTGTATGCTGTTCTGGTGCTAGTTGATCTTTCTCTTGTCAATATGGTCC
AGTGCAAGATAGCTTGATCAGTAGCTAAAGTTGTGGCAAGAGATGACAAAATGTCAATTTTTTTACATCTCTCTTCCAAGGAAATTGAGGCTTGTTGGTGCATTTTATTTAATCAAACTCAACATGGATTTAGTCATCCTGTGTTATCTGTGGTGGCATATACCATGTTTGTAATGGTGAGTCTAGCGGTGTGTATTCTT
GTAGCTTGAGATATTCCATTTTTTGAGTCCATAATAGCAGCTATTTTTATTCTGTTTAACATAGCGAGCTTATAATGTGATTCCTTATGTTTTCCTTACTCTAAACTGAGTAAACTTCTCAGATATTTGAATATAGAGGCTACAAGAAAAGCTTTCAATATTCTAGAATCTAAATCCATATTCAGTGACGTCTGCTGTAC
AAATCAT
>TRINITY_DN42175_c0_g4_i3 from sample A9 / Example unspliced isoform:CGCCTTTATTGTACGTATATAAGGTAGATATTCCTCCCCGGATCTGGAGCGTCTCTCCAGTTCTGCAAACGGGTCCCCTATTTTCAGCTCAAAACTGCCAGTCAGATAAATCCAAATGCGAACACGGCCCGTGGAGCTTCCAACTGGCTCATAAAGgtttctcacagactttatatagccttaattatcctcatatgtca
aacaatgatatagtaatggtaccagctacaattccaatctgtgaaaacaagttcttcctctctgagactgattaataagaaaaaccagtgatcaaccttactttgttaaagctggcattgttactctaagggccctacgtgatttgaagtataccagatccgcttgacaattgagttatcgggtacctttccaaccctca
ttattttcaccaactgtttttggagtttcatggattgtgattttgtaacgcttctggttacatctgcttgatttcttatccttttccaccaattgggagagtaatttttctcattctttatccttttctatcaattgggttagacttggtctatacattttgtccaagctttcacttgtttttgaaatgccggaagaaac
ttgccatcaggtagtggtcatcctttgcattaagaagggtatctattccgtccaaatagctttagcgcctcatccctttgaacttcatgctatgaaggtgggccagatcatagcgagaattaagcctgcgcttgtctagaaagGCAGGATCTGCCATGAAACTCTGATCTAGTGAACACTCGGCATTTGGATTCTGAAGA
ACATACCGAGATGGAAGAAAAACACATCAGCAGCGATCATCGTCATAACCACCACCATGATCATCATAAGCAGCAGCAAGCTCCATCAGGGACTGAGAACCATCATGCAAAACAGCCTCATGGTGTATGGGTTTGTCACCGGTGTGGGTGGACGTATCCTAATCCACATCCAAGTGCTAAGCACCGGAGGAACCACAGGA
AGCATTGTGGCAAAATAGAGGGCTTTACGTTGATTGCTTCAGAGGACAGAGAAACTCATGGAGGTTCATCAGACGAAGAGTTGACAGATGATGAACATAATCCAACAGATTACCAGAAGCCTATGTCATCCGAAGAAAAGATTATTTTGCCTCAAACACAGGCATTGGCACCAACACCCGAGTTTAATGCAAGCAATCTT
AATATAAATTCAAGTGAAGCTGATCCTGCAAAAGCTGGTCTGAAAAGGGGGGCTCCTGATAATGCGATTTTAAATATATCTCAGAGCACTGTTCTTGAAGCAAAAGAAAGCAATTTCGGTCAAATTGATCAAAATCGTAAGGAGGCTACTAAATCAATTTTGGGTGATGAGGTACATGGCTTGAATTTATCTGGTACTAT
AGAACCGTCAGATAATTTTGAAGGACACGATTTGGTCAGTTTTGAACAAAAGTCAAACATATTTCTCAAGGAGGTGCCAGATATGGACAGCAGCCACCTCATCATTCGAGACATTGGGCCTCAAGAATTTCCAGTTAAAGAGTCTCATACAATGTCAGATTATCCTGAGCTGAAAAACCAGAATAACCAAACAGCTAGAT
TTCTGCATGTGCCAGAAGACTCTATTCCACCCAGTGTTCAAGTCCATCCAGAATCTGGTGATATAGTTGATGGACTTGGTTTCCAAATCATGAATGACAGGGATAAACAGCACATTGGAATTGCTGGGGAGTGGCAAAATATTTTTGAGGAAGTTAAAAGACCACTTGTGAAATCACAGGATACAGGTCATACTGAACAC
CCGAGGACTTTCAGCATGGCAGGTACAACTCCAATGCATGTGACACAGGAGTATAACTTGGGAATTAGTCCGAAGAAAGTAGGAATTGCATCAATTTTGGAACAAATTTCATTCAAGGGAGAAAATTCAGTTGAGTCAAAGATCAAAGTTCCTTTAGCTGAGAAAACTCTGCTGTCTGCTGACCAGAAAACCTATGAGCT
ATTTCAGACAAGTTGTCAAGTTTCTGGCGATACGAAACAAAATGTCTCTATTTCTGAACAAGATATGGTACATGATGTGGCATACCCTTCTGTTTGTGGCAAAGGGTCCCTTGCAGAAAAATCTCAAGGATGTATTCTCAGTCAGAAAGAAGACCCTCAATCTTTGGCATTTGAACCTGAAACAGGGAAGTTGCTTGAAC
AGCCATCTTCTGCAGCCTTAATTGAGTCAATTTTTGTAGATAATGTTCATCCTGAAGTGACAAAATGCATGATCTCTTCTCAAGATAAGAGCAGTGTAGAACAAGTGAAACTTGAAGATTCTGACTTTTCTCCTCCAATCAGTGAAGTTTCTGAAATTCATAAAAATGGGAAATTCGAAAACGAAAGAAAGAACCCAAGT
TCTGAAGGCCTTGACAAAACCTCATGTCAGAAGTTAGATTTACAGGTTTCAAGTGAACTGTTTATTTCTGATCAAGACCCAAGTTGTGCAGATAGCTTGACATCAGGATTTACAAAAGCAGGGGAATTGCAGTGGGTAGAAAATAATGGCATTACAAACCCGGGTATAACTGAACATGGAATAGGGTTTTTGGATACAGA
GAGCAGAAAAGATGAATCCTCAAAAGGAAATATTATAATTACAGATGAGGACAATGACAGAAATACCAAAGCTACTGTAATGGCACTGGAAAAGTTTCCTAAAACATCCCTTGAGGATGTGGTTGAGCAGAAGTCTGTAGTATCAGAATTTCTAGTACCAGATGCAAGAGATTCTGACTTGAGCTTCCAAGGTATTAATG
ATACAGAATCACGGGCTCCACTTTCAAGGGAAGAATCAAAACATGACAGCAATGGACAGAGTCTGGAGCAATCAGTAGTGGATAAAAGACATCAATTTAAAGAAGAAGTTGTCCTTGACACATCCTTAGCAGTTCATCCCGCAACAACAGTAACAGTGGACAATTCTTTGCACTTGGATGTCAGCAAGAATAATCATGAG
AATTCTTTTAAGTGCGCTACTGATGATGTGTGGGGAAACATAAATGAATGGACGGAGAATTTTGAGCCGGCACTATGGGAAAAACTACTAGAGAAAGATGTCAAGGAAGCAATAAATCAGGAGACATACCAAGAACTGGGAAATGCTGGAACTTCACCTGTGAACCCATTCATTCAGCAATATAGGCTTTCTAACAAAGT
GGAACCTCAAATATTTTCTGTCGAGGGACAACATGTGCAGACATCTGAGCAGCTGAACAATGGCTCTACAGAAGTAGAGAGAAAACATCCTTCAAGCACTAAAGGAGTTGAGGAAGATCCTCTTGTTTCACAGGTTGGCTGGTTCGCTTCTTTTCCTGAAGTCACAAATGAATCTCATGAAAGAAAAGTTGATAATGAGT
TAAGAACAGATGCGTCAGAGATGATTCCTGGGGCACTTGAATTGCCTCACACACATTTGAGCAACTCTCCACCAAGATCATCAAATCCTAAGCCCGAAGAGAAAAAGAAAGGCAGCATCAAATCAATTTGGAATTTATGTGTATGCTGTTCTGGTGCTAGTTGATCTTTCTCTTGTCAATATGGTCCAGTGCAAGATAGC
TTGATCAGTAGCTAAAGTTGTGGCAAGAGATGACAAAATGTCAATTTTTTTACATCTCTCTTCCAAGGAAATTGAGGCTTGTTGGTGCATTTTATTTAATCAAACTCAACATGGATTTAGTCATCCTGTGTTATCTGTGGTGGCATATACCATGTTTGTAATGGTGAGTCTAGCGGTGTGTATTCTTGTAGCTTGAGATA
TTCCATTTTTTGAGTCCATAATAGCAGCTATTTTTATTCTGTTTAACATAGCGAGCTTATAATGTGATTCCTTATGTTTTCCTTACTCTAAACTGAGTAAACTTCTCAGATATTTGAATATAGAGGCTACAAGAAAAGCTTTCAATATTCTAGAATCTAAATCCATATTCAGTGACGTCTGCTGTACAAATCAT
Intron 5 GTAATCAGTT ... GCTTGTCTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 47.54 | 16 | 11 | 18 |
| A2 | 53.19 | 11 | 10 | 15 |
| A3 | 64.44 | 8 | 17 | 12 |
| A4 | 73.33 | 2 | 4 | 7 |
| A5 | 50 | 12 | 6 | 18 |
| A6 | -1 | 0 | 0 | 0 |
| A7 | 36.84 | 6 | 3 | 4 |
| A8 | 75 | 1 | 4 | 2 |
| A9 | 52.94 | 4 | 3 | 6 |
| A10 | 61.9 | 4 | 7 | 6 |
>TRINITY_DN42175_c0_g4_i4 from sample A9 / Example spliced isoformCGCCTTTATTGTACGTATATAAGGTAGATATTCCTCCCCGGATCTGGAGCGTCTCTCCAGTTCTGCAAACGGGTCCCCTATTTTCAGCTCAAAACTGCCAGTCAGATAAATCCAAATGCGAACAATGCCCGTGGAGCTTCCAACTGGCTCATAAAGGTTTCTCACAGACTTTATATAGCCTTAATTATCCTCATATGTCA
AACAATGATATAGTAATGGTACCAGCTACAATTCCAATCTGTGAAAACAAGTTCTTCCTCTCTGAGACTGATTAATAAGAAAAACCAGTGATCAACCTTACTTTGTTAAAGCTGGCATTGTTACTCTAAGGGCCCTACGTGATTTGAAGTATACCAGATCCGCTTGACAATTGAGTTATCGGGTACCTTTCCAACCCTCA
TTATTTTCACCAACTGTTTTTGGAGTTTCATGGATTGTGATTTTGTAACGCTTCTGGTTACATCTGCTTGATTTCTTATCCTTTTCCACCAATTGGGAGAGTAATTTTTCTCATTCTTTATCCTTTTCTATCAATTGGGTTAGACTTGGTCTATACATTTTGTCCAAGCTTTCACTTGTTTTTGAAATGCCGGAAGAAAC
TTGCCATCAGGTAGTGGTCATCCTTTGCATTAAGAAGGTATCTATTCCGTCCAAATAGCTTTAGCGCCTCATCCCTTTGAACTTCATGCTATGAAGGTGGGCCAGATCATAGCGAGAATTAAGCCTGAAAGGCAGGATCTGCCATGAAACTCTGATCTAGTGAACACTCGGCATTTGGATTCTGAAGAACATACCGAGAT
GGAAGAAAAACACATCAGCAGCGATCATCGTCATAACCACCACCATGATCATCATAAGCAGCAGCAAGCTCCATCAGGGACTGAGAACCATCATGCAAAACAGCCTCATGGTGTATGGGTTTGTCACCGGTGTGGGTGGACGTATCCTAATCCACATCCAAGTGCTAAGCACCGGAGGAACCACAGGAAGCATTGTGGCA
AAATAGAGGGCTTTACGTTGATTGCTTCAGAGGACAGAGAAACTCATGGAGGTTCATCAGACGAAGAGTTGACAGATGATGAACATAATCCAACAGATTACCAGAAGCCTATGTCATCCGAAGAAAAGATTATTTTGCCTCAAACACAGGCATTGGCACCAACACCCGAGTTTAATGCAAGCAATCTTAATATAAATTCA
AGTGAAGCTGATCCTGCAAAAGCTGGTCTGAAAAGGGGGGCTCCTGATAATGCGATTTTAAATATATCTCAGAGCACTGTTCTTGAAGCAAAAGAAAGCAATTTCGGTCAAATTGATCAAAATCGTAAGGAGGCTACTAAATCAATTTTGGGTGATGAGGTACATGGCTTGAATTTATCTGGTACTATAGAACCGTCAGA
TAATTTTGAAGGACACGATTTGGTCAGTTTTGAACAAAAGTCAAACATATTTCTCAAGGAGGTGCCAGATATGGACAGCAGCCACCTCATCATTCGAGACATTGGGCCTCAAGAATTTCCAGTTAAAGAGTCTCATACAATGTCAGATTATCCTGAGCTGAAAAACCAGAATAACCAAACAGCTAGATTTCTGCATGTGC
CAGAAGACTCTATTCCACCCAGTGTTCAAGTCCATCCAGAATCTGGTGATATAGTTGATGGACTTGGTTTCCAAATCATGAATGACAGGGATAAACAGCACATTGGAATTGCTGGGGAGTGGCAAAATATTTTTGAGGAAGTTAAAAGACCACTTGTGAAATCACAGGATACAGGTCATACTGAACACCCGAGGACTTTC
AGCATGGCAGGTACAACTCCAATGCATGTGACACAGGAGTATAACTTGGGAATTAGTCCGAAGAAAGTAGGAATTGCATCAATTTTGGAACAAATTTCATTCAAGGGAGAAAATTCAGTTGAGTCAAAGATCAAAGTTCCTTTAGCTGAGAAAACTCTGCTGTCTGCTGACCAGAAAACCTATGAGCTATTTCAGACAAG
TTGTCAAGTTTCTGGCGATACGAAACAAAATGTCTCTATTTCTGAACAAGATATGGTACATGATGTGGCATACCCTTCTGTTTGTGGCAAAGGGTCCCTTGCAGAAAAATCTCAAGGATGTATTCTCAGTCAGAAAGAAGACCCTCAATCTTTGGCATTTGAACCTGAAACAGGGAAGTTGCTTGAACAGCCATCTTCTG
CAGCCTTAATTGAGTCAATTTTTGTAGATAATGTTCATCCTGAAGTGACAAAATGCATGATCTCTTCTCAAGATAAGAGCAGTGTAGAACAAGTGAAACTTGAAGATTCTGACTTTTCTCCTCCAATCAGTGAAGTTTCTGAAATTCATAAAAATGGGAAATTCGAAAACGAAAGAAAGAACCCAAGTTCTGAAGGCCTT
GACAAAACCTCATGTCAGAAGTTAGATTTACAGGTTTCAAGTGAACTGTTTATTTCTGATCAAGACCCAAGTTGTGCAGATAGCTTGACATCAGGATTTACAAAAGCAGGGGAATTGCAGTGGGTAGAAAATAATGGCATTACAAACCCGGGTATAACTGAACATGGAATAGGGTTTTTGGATACAGAGAGCAGAAAAGA
TGAATCCTCAAAAGGAAATATTATAATTACAGATGAGGACAATGACAGAAATACCAAAGCTACTGTAATGGCACTGGAAAAGTTTCCTAAAACATCCCTTGAGGATGTGGTTGAGCAGAAGTCTGTAGTATCAGAATTTCTAGTACCAGATGCAAGAGATTCTGACTTGAGCTTCCAAGGTATTAATGATACAGAATCAC
GGGCTCCACTTTCAAGGGAAGAATCAAAACATGACAGCAATGGACAGAGTCTGGAGCAATCAGTAGTGGATAAAAGACATCAATTTAAAGAAGAAGTTGTCCTTGACACATCCTTAGCAGTTCATCCCGCAACAACAGTAACAGTGGACAATTCTTTGCACTTGGATGTCAGCAAGAATAATCATGAGAATTCTTTTAAG
TGCGCTACTGATGATGTGTGGGGAAACATAAATGAATGGACGGAGAATTTTGAGCCGGCACTATGGGAAAAACTACTAGAGAAAGATGTCAAGGAAGCAATAAATCAGGAGACATACCAAGAACTGGGAAATGCTGGAACTTCACCTGTGAACCCATTCATTCAGCAATATAGGCTTTCTAACAAAGTGGAACCTCAAAT
ATTTTCTGTCGAGGGACAACATGTGCAGACATCTGAGCAGCTGAACAATGGCTCTACAGAAGTAGAGAGAAAACATCCTTCAAGCACTAAAGGAGTTGAGGAAGATCCTCTTGTTTCACAGGTTGGCTGGTTCGCTTCTTTTCCTGAAGTCACAAATGAATCTCATGAAAGAAAAGTTGATAATGAGTTAAGAACAGATG
CGTCAGAGATGATTCCTGGGGCACTTGAATTGCCTCACACACATTTGAGCAACTCTCCACCAAGATCATCAAATCCTAAGCCCGAAGAGAAAAAGAAAGGCAGCATCAAATCAATTTGGAATTTATGTGTATGCTGTTCTGGTGCTAGTTGATCTTTCTCTTGTCAATATGGTCCAGTGCAAGATAGCTTGATCAGTAGC
TAAAGTTGTGGCAAGAGATGACAAAATGTCAATTTTTTTACATCTCTCTTCCAAGGAAATTGAGGCTTGTTGGTGCATTTTATTTAATCAAACTCAACATGGATTTAGTCATCCTGTGTTATCTGTGGTGGCATATACCATGTTTGTAATGGTGAGTCTAGCGGTGTGTATTCTTGTAGCTTGAGATATTCCATTTTTTG
AGTCCATAATAGCAGCTATTTTTATTCTGTTTAACATAGCGAGCTTATAATGTGATTCCTTATGTTTTCCTTACTCTAAACTGAGTAAACTTCTCAGATATTTGAATATAGAGGCTACAAGAAAAGCTTTCAATATTCTAGAATCTAAATCCATATTCAGTGACGTCTGCTGTACAAATCAT
>TRINITY_DN42175_c0_g4_i1 from sample A9 / Example unspliced isoform:TTTCTCACAGACTTTATATAGCCTTAATTATCCTCATATGTCAAACAATGATATAGTAATGGTACCAGCTACAATTCCAATCTGTGAAAACAAGTTCTTCCTCTCTGAGACTGATTAATAAGAAAAACCAGTGATCAACCTTACTTTGTTAAAGCTGGCATTGTTACTCTAAGGGCCCTACGTGATTTGAAGTATACCAG
ATCCGCTTGACAATTGAGTTATCGGGTACCTTTCCAACCCTCATTATTTTCACCAACTGTTTTTGGAGTTTCATGGATTGTGATTTTGTAACGCTTCTGGTTACATCTGCTTGATTTCTTATCCTTTTCCACCAATTGGGAGAGTAATTTTTCTCATTCTTTATCCTTTTCTATCAATTGGGTTAGACTTGGTCTATACA
TTTTGTCCAAGCTTTCACTTGTTTTTGAAATGCCGGAAGAAACTTGCCATCAGGTAGTGGTCATCCTTTGCATTAAGAAGGGTATCTATTCCGTCCAAATAGCTTTAGCGCCTCATCCCTTTGAACTTCATGCTATGAAGGTGGGCCAGATCATAGCGAGAATTAAGCCTGgtaatcagttttcctaattaaattcattt
attattatccttttatatcctttcggttagattcggtccataaaatctttcaaatgataaaaatagggaccataagttaatttttattttttgagggccaattgagttagaaagcataatagaagaatttcttctagcattgcctgctttgtcgatctagtattgatataagtcaaattgacctaagttagattggcagc
gcttgtctagAAAGGCAGGATCTGCCATGAAACTCTGATCTAGTGAACACTCGGCATTTGGATTCTGAAGAACATACCGAGATGGAAGAAAAACACATCAGCAGCGATCATCGTCATAACCACCACCATGATCATCATAAGCAGCAGCAAGCTCCATCAGGGACTGAGAACCATCATGCAAAACAGCCTCATGGTGTATG
GGTTTGTCACCGGTGTGGGTGGACGTATCCTAATCCACATCCAAGTGCTAAGCACCGGAGGAACCACAGGAAGCATTGTGGCAAAATAGAGGGCTTTACGTTGATTGCTTCAGAGGACAGAGAAACTCATGGAGGTTCATCAGACGAAGAGTTGACAGATGATGAACATAATCCAACAGATTACCAGAAGCCTATGTCAT
CCGAAGAAAAGATTATTTTGCCTCAAACACAGGCATTGGCACCAACACCCGAGTTTAATGCAAGCAATCTTAATATAAATTCAAGTGAAGCTGATCCTGCAAAAGCTGGTCTGAAAAGGGGGGCTCCTGATAATGCGATTTTAAATATATCTCAGAGCACTGTTCTTGAAGCAAAAGAAAGCAATTTCGGTCAAATTGAT
CAAAATCGTAAGGAGGCTACTAAATCAATTTTGGGTGATGAGGTACATGGCTTGAATTTATCTGGTACTATAGAACCGTCAGATAATTTTGAAGGACACGATTTGGTCAGTTTTGAACAAAAGTCAAACATATTTCTCAAGGAGGTGCCAGATATGGACAGCAGCCACCTCATCATTCGAGACATTGGGCCTCAAGAATT
TCCAGTTAAAGAGTCTCATACAATGTCAGATTATCCTGAGCTGAAAAACCAGAATAACCAAACAGCTAGATTTCTGCATGTGCCAGAAGACTCTATTCCACCCAGTGTTCAAGTCCATCCAGAATCTGGTGATATAGTTGATGGACTTGGTTTCCAAATCATGAATGACAGGGATAAACAGCACATTGGAATTGCTGGGG
AGTGGCAAAATATTTTTGAGGAAGTTAAAAGACCACTTGTGAAATCACAGGATACAGGTCATACTGAACACCCGAGGACTTTCAGCATGGCAGGTACAACTCCAATGCATGTGACACAGGAGTATAACTTGGGAATTAGTCCGAAGAAAGTAGGAATTGCATCAATTTTGGAACAAATTTCATTCAAGGGAGAAAATTCA
GTTGAGTCAAAGATCAAAGTTCCTTTAGCTGAGAAAACTCTGCTGTCTGCTGACCAGAAAACCTATGAGCTATTTCAGACAAGTTGTCAAGTTTCTGGCGATACGAAACAAAATGTCTCTATTTCTGAACAAGATATGGTACATGATGTGGCATACCCTTCTGTTTGTGGCAAAGGGTCCCTTGCAGAAAAATCTCAAGG
ATGTATTCTCAGTCAGAAAGAAGACCCTCAATCTTTGGCATTTGAACCTGAAACAGGGAAGTTGCTTGAACAGCCATCTTCTGCAGCCTTAATTGAGTCAATTTTTGTAGATAATGTTCATCCTGAAGTGACAAAATGCATGATCTCTTCTCAAGATAAGAGCAGTGTAGAACAAGTGAAACTTGAAGATTCTGACTTTT
CTCCTCCAATCAGTGAAGTTTCTGAAATTCATAAAAATGGGAAATTCGAAAACGAAAGAAAGAACCCAAGTTCTGAAGGCCTTGACAAAACCTCATGTCAGAAGTTAGATTTACAGGTTTCAAGTGAACTGTTTATTTCTGATCAAGACCCAAGTTGTGCAGATAGCTTGACATCAGGATTTACAAAAGCAGGGGAATTG
CAGTGGGTAGAAAATAATGGCATTACAAACCCGGGTATAACTGAACATGGAATAGGGTTTTTGGATACAGAGAGCAGAAAAGATGAATCCTCAAAAGGAAATATTATAATTACAGATGAGGACAATGACAGAAATACCAAAGCTACTGTAATGGCACTGGAAAAGTTTCCTAAAACATCCCTTGAGGATGTGGTTGAGCA
GAAGTCTGTAGTATCAGAATTTCTAGTACCAGATGCAAGAGATTCTGACTTGAGCTTCCAAGGTATTAATGATACAGAATCACGGGCTCCACTTTCAAGGGAAGAATCAAAACATGACAGCAATGGACAGAGTCTGGAGCAATCAGTAGTGGATAAAAGACATCAATTTAAAGAAGAAGTTGTCCTTGACACATCCTTAG
CAGTTCATCCCGCAACAACAGTAACAGTGGACAATTCTTTGCACTTGGATGTCAGCAAGAATAATCATGAGAATTCTTTTAAGTGCGCTACTGATGATGTGTGGGGAAACATAAATGAATGGACGGAGAATTTTGAGCCGGCACTATGGGAAAAACTACTAGAGAAAGATGTCAAGGAAGCAATAAATCAGGAGACATAC
CAAGAACTGGGAAATGCTGGAACTTCACCTGTGAACCCATTCATTCAGCAATATAGGCTTTCTAACAAAGTGGAACCTCAAATATTTTCTGTCGAGGGACAACATGTGCAGACATCTGAGCAGCTGAACAATGGCTCTACAGAAGTAGAGAGAAAACATCCTTCAAGCACTAAAGGAGTTGAGGAAGATCCTCTTGTTTC
ACAGGTTGGCTGGTTCGCTTCTTTTCCTGAAGTCACAAATGAATCTCATGAAAGAAAAGTTGATAATGAGTTAAGAACAGATGCGTCAGAGATGATTCCTGGGGCACTTGAATTGCCTCACACACATTTGAGCAACTCTCCACCAAGATCATCAAATCCTAAGCCCGAAGAGAAAAAGAAAGGCAGCATCAAATCAATTT
GGAATTTATGTGTATGCTGTTCTGGTGCTAGTTGATCTTTCTCTTGTCAATATGGTCCAGTGCAAGATAGCTTGATCAGTAGCTAAAGTTGTGGCAAGAGATGACAAAATGTCAATTTTTTTACATCTCTCTTCCAAGGAAATTGAGGCTTGTTGGTGCATTTTATTTAATCAAACTCAACATGGATTTAGTCATCCTGT
GTTATCTGTGGTGGCATATACCATGTTTGTAATGGTGAGTCTAGCGGTGTGTATTCTTGTAGCTTGAGATATTCCATTTTTTGAGTCCATAATAGCAGCTATTTTTATTCTGTTTAACATAGCGAGCTTATAATGTGATTCCTTATGTTTTCCTTACTCTAAACTGAGTAAACTTCTCAGATATTTGAATATAGAGGCTA
CAAGAAAAGCTTTCAATATTCTAGAATCTAAATCCATATTCAGTGACGTCTGCTGTACAAATCAT
Intron 6 GTTTCTCACA ... AGCCTGAAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 74.47 | 6 | 20 | 15 |
| A2 | 74.19 | 4 | 12 | 11 |
| A3 | 61.11 | 7 | 14 | 8 |
| A4 | 100 | 0 | 14 | 2 |
| A5 | 61.9 | 8 | 14 | 12 |
| A6 | -1 | 0 | 0 | 0 |
| A7 | 70.37 | 4 | 13 | 6 |
| A8 | 60 | 1 | 2 | 1 |
| A9 | 80 | 1 | 5 | 3 |
| A10 | 64.1 | 7 | 21 | 4 |
>TRINITY_DN42175_c0_g4_i2 from sample A9 / Example spliced isoformCGCCTTTATTGTACGTATATAAGGTAGATATTCCTCCCCGGATCTGGAGCGTCTCTCCAGTTCTGCAAACGGGTCCCCTATTTTCAGCTCAAAACTGCCAGTCAGATAAATCCAAATGCGAACACGGCCCGTGGAGCTTCCAACTGGCTCATAAAGGCAGGATCTGCCATGAAACTCTGATCTAGTGAACACTCGGCATT
TGGATTCTGAAGAACATACCGAGATGGAAGAAAAACACATCAGCAGCGATCATCGTCATAACCACCACCATGATCATCATAAGCAGCAGCAAGCTCCATCAGGGACTGAGAACCATCATGCAAAACAGCCTCATGGTGTATGGGTTTGTCACCGGTGTGGGTGGACGTATCCTAATCCACATCCAAGTGCTAAGCACCGG
AGGAACCACAGGAAGCATTGTGGCAAAATAGAGGGCTTTACGTTGATTGCTTCAGAGGACAGAGAAACTCATGGAGGTTCATCAGACGAAGAGTTGACAGATGATGAACATAATCCAACAGATTACCAGAAGCCTATGTCATCCGAAGAAAAGATTATTTTGCCTCAAACACAGGCATTGGCACCAACACCCGAGTTTAA
TGCAAGCAATCTTAATATAAATTCAAGTGAAGCTGATCCTGCAAAAGCTGGTCTGAAAAGGGGGGCTCCTGATAATGCGATTTTAAATATATCTCAGAGCACTGTTCTTGAAGCAAAAGAAAGCAATTTCGGTCAAATTGATCAAAATCGTAAGGAGGCTACTAAATCAATTTTGGGTGATGAGGTACATGGCTTGAATT
TATCTGGTACTATAGAACCGTCAGATAATTTTGAAGGACACGATTTGGTCAGTTTTGAACAAAAGTCAAACATATTTCTCAAGGAGGTGCCAGATATGGACAGCAGCCACCTCATCATTCGAGACATTGGGCCTCAAGAATTTCCAGTTAAAGAGTCTCATACAATGTCAGATTATCCTGAGCTGAAAAACCAGAATAAC
CAAACAGCTAGATTTCTGCATGTGCCAGAAGACTCTATTCCACCCAGTGTTCAAGTCCATCCAGAATCTGGTGATATAGTTGATGGACTTGGTTTCCAAATCATGAATGACAGGGATAAACAGCACATTGGAATTGCTGGGGAGTGGCAAAATATTTTTGAGGAAGTTAAAAGACCACTTGTGAAATCACAGGATACAGG
TCATACTGAACACCCGAGGACTTTCAGCATGGCAGGTACAACTCCAATGCATGTGACACAGGAGTATAACTTGGGAATTAGTCCGAAGAAAGTAGGAATTGCATCAATTTTGGAACAAATTTCATTCAAGGGAGAAAATTCAGTTGAGTCAAAGATCAAAGTTCCTTTAGCTGAGAAAACTCTGCTGTCTGCTGACCAGA
AAACCTATGAGCTATTTCAGACAAGTTGTCAAGTTTCTGGCGATACGAAACAAAATGTCTCTATTTCTGAACAAGATATGGTACATGATGTGGCATACCCTTCTGTTTGTGGCAAAGGGTCCCTTGCAGAAAAATCTCAAGGATGTATTCTCAGTCAGAAAGAAGACCCTCAATCTTTGGCATTTGAACCTGAAACAGGG
AAGTTGCTTGAACAGCCATCTTCTGCAGCCTTAATTGAGTCAATTTTTGTAGATAATGTTCATCCTGAAGTGACAAAATGCATGATCTCTTCTCAAGATAAGAGCAGTGTAGAACAAGTGAAACTTGAAGATTCTGACTTTTCTCCTCCAATCAGTGAAGTTTCTGAAATTCATAAAAATGGGAAATTCGAAAACGAAAG
AAAGAACCCAAGTTCTGAAGGCCTTGACAAAACCTCATGTCAGAAGTTAGATTTACAGGTTTCAAGTGAACTGTTTATTTCTGATCAAGACCCAAGTTGTGCAGATAGCTTGACATCAGGATTTACAAAAGCAGGGGAATTGCAGTGGGTAGAAAATAATGGCATTACAAACCCGGGTATAACTGAACATGGAATAGGGT
TTTTGGATACAGAGAGCAGAAAAGATGAATCCTCAAAAGGAAATATTATAATTACAGATGAGGACAATGACAGAAATACCAAAGCTACTGTAATGGCACTGGAAAAGTTTCCTAAAACATCCCTTGAGGATGTGGTTGAGCAGAAGTCTGTAGTATCAGAATTTCTAGTACCAGATGCAAGAGATTCTGACTTGAGCTTC
CAAGGTATTAATGATACAGAATCACGGGCTCCACTTTCAAGGGAAGAATCAAAACATGACAGCAATGGACAGAGTCTGGAGCAATCAGTAGTGGATAAAAGACATCAATTTAAAGAAGAAGTTGTCCTTGACACATCCTTAGCAGTTCATCCCGCAACAACAGTAACAGTGGACAATTCTTTGCACTTGGATGTCAGCAA
GAATAATCATGAGAATTCTTTTAAGTGCGCTACTGATGATGTGTGGGGAAACATAAATGAATGGACGGAGAATTTTGAGCCGGCACTATGGGAAAAACTACTAGAGAAAGATGTCAAGGAAGCAATAAATCAGGAGACATACCAAGAACTGGGAAATGCTGGAACTTCACCTGTGAACCCATTCATTCAGCAATATAGGC
TTTCTAACAAAGTGGAACCTCAAATATTTTCTGTCGAGGGACAACATGTGCAGACATCTGAGCAGCTGAACAATGGCTCTACAGAAGTAGAGAGAAAACATCCTTCAAGCACTAAAGGAGTTGAGGAAGATCCTCTTGTTTCACAGGTTGGCTGGTTCGCTTCTTTTCCTGAAGTCACAAATGAATCTCATGAAAGAAAA
GTTGATAATGAGTTAAGAACAGATGCGTCAGAGATGATTCCTGGGGCACTTGAATTGCCTCACACACATTTGAGCAACTCTCCACCAAGATCATCAAATCCTAAGCCCGAAGAGAAAAAGAAAGGCAGCATCAAATCAATTTGGAATTTATGTGTATGCTGTTCTGGTGCTAGTTGATCTTTCTCTTGTCAATATGGTCC
AGTGCAAGATAGCTTGATCAGTAGCTAAAGTTGTGGCAAGAGATGACAAAATGTCAATTTTTTTACATCTCTCTTCCAAGGAAATTGAGGCTTGTTGGTGCATTTTATTTAATCAAACTCAACATGGATTTAGTCATCCTGTGTTATCTGTGGTGGCATATACCATGTTTGTAATGGTGAGTCTAGCGGTGTGTATTCTT
GTAGCTTGAGATATTCCATTTTTTGAGTCCATAATAGCAGCTATTTTTATTCTGTTTAACATAGCGAGCTTATAATGTGATTCCTTATGTTTTCCTTACTCTAAACTGAGTAAACTTCTCAGATATTTGAATATAGAGGCTACAAGAAAAGCTTTCAATATTCTAGAATCTAAATCCATATTCAGTGACGTCTGCTGTAC
AAATCAT
>TRINITY_DN42175_c0_g4_i4 from sample A9 / Example unspliced isoform:CGCCTTTATTGTACGTATATAAGGTAGATATTCCTCCCCGGATCTGGAGCGTCTCTCCAGTTCTGCAAACGGGTCCCCTATTTTCAGCTCAAAACTGCCAGTCAGATAAATCCAAATGCGAACAATGCCCGTGGAGCTTCCAACTGGCTCATAAAGgtttctcacagactttatatagccttaattatcctcatatgtca
aacaatgatatagtaatggtaccagctacaattccaatctgtgaaaacaagttcttcctctctgagactgattaataagaaaaaccagtgatcaaccttactttgttaaagctggcattgttactctaagggccctacgtgatttgaagtataccagatccgcttgacaattgagttatcgggtacctttccaaccctca
ttattttcaccaactgtttttggagtttcatggattgtgattttgtaacgcttctggttacatctgcttgatttcttatccttttccaccaattgggagagtaatttttctcattctttatccttttctatcaattgggttagacttggtctatacattttgtccaagctttcacttgtttttgaaatgccggaagaaac
ttgccatcaggtagtggtcatcctttgcattaagaaggtatctattccgtccaaatagctttagcgcctcatccctttgaacttcatgctatgaaggtgggccagatcatagcgagaattaagcctgaaagGCAGGATCTGCCATGAAACTCTGATCTAGTGAACACTCGGCATTTGGATTCTGAAGAACATACCGAGAT
GGAAGAAAAACACATCAGCAGCGATCATCGTCATAACCACCACCATGATCATCATAAGCAGCAGCAAGCTCCATCAGGGACTGAGAACCATCATGCAAAACAGCCTCATGGTGTATGGGTTTGTCACCGGTGTGGGTGGACGTATCCTAATCCACATCCAAGTGCTAAGCACCGGAGGAACCACAGGAAGCATTGTGGCA
AAATAGAGGGCTTTACGTTGATTGCTTCAGAGGACAGAGAAACTCATGGAGGTTCATCAGACGAAGAGTTGACAGATGATGAACATAATCCAACAGATTACCAGAAGCCTATGTCATCCGAAGAAAAGATTATTTTGCCTCAAACACAGGCATTGGCACCAACACCCGAGTTTAATGCAAGCAATCTTAATATAAATTCA
AGTGAAGCTGATCCTGCAAAAGCTGGTCTGAAAAGGGGGGCTCCTGATAATGCGATTTTAAATATATCTCAGAGCACTGTTCTTGAAGCAAAAGAAAGCAATTTCGGTCAAATTGATCAAAATCGTAAGGAGGCTACTAAATCAATTTTGGGTGATGAGGTACATGGCTTGAATTTATCTGGTACTATAGAACCGTCAGA
TAATTTTGAAGGACACGATTTGGTCAGTTTTGAACAAAAGTCAAACATATTTCTCAAGGAGGTGCCAGATATGGACAGCAGCCACCTCATCATTCGAGACATTGGGCCTCAAGAATTTCCAGTTAAAGAGTCTCATACAATGTCAGATTATCCTGAGCTGAAAAACCAGAATAACCAAACAGCTAGATTTCTGCATGTGC
CAGAAGACTCTATTCCACCCAGTGTTCAAGTCCATCCAGAATCTGGTGATATAGTTGATGGACTTGGTTTCCAAATCATGAATGACAGGGATAAACAGCACATTGGAATTGCTGGGGAGTGGCAAAATATTTTTGAGGAAGTTAAAAGACCACTTGTGAAATCACAGGATACAGGTCATACTGAACACCCGAGGACTTTC
AGCATGGCAGGTACAACTCCAATGCATGTGACACAGGAGTATAACTTGGGAATTAGTCCGAAGAAAGTAGGAATTGCATCAATTTTGGAACAAATTTCATTCAAGGGAGAAAATTCAGTTGAGTCAAAGATCAAAGTTCCTTTAGCTGAGAAAACTCTGCTGTCTGCTGACCAGAAAACCTATGAGCTATTTCAGACAAG
TTGTCAAGTTTCTGGCGATACGAAACAAAATGTCTCTATTTCTGAACAAGATATGGTACATGATGTGGCATACCCTTCTGTTTGTGGCAAAGGGTCCCTTGCAGAAAAATCTCAAGGATGTATTCTCAGTCAGAAAGAAGACCCTCAATCTTTGGCATTTGAACCTGAAACAGGGAAGTTGCTTGAACAGCCATCTTCTG
CAGCCTTAATTGAGTCAATTTTTGTAGATAATGTTCATCCTGAAGTGACAAAATGCATGATCTCTTCTCAAGATAAGAGCAGTGTAGAACAAGTGAAACTTGAAGATTCTGACTTTTCTCCTCCAATCAGTGAAGTTTCTGAAATTCATAAAAATGGGAAATTCGAAAACGAAAGAAAGAACCCAAGTTCTGAAGGCCTT
GACAAAACCTCATGTCAGAAGTTAGATTTACAGGTTTCAAGTGAACTGTTTATTTCTGATCAAGACCCAAGTTGTGCAGATAGCTTGACATCAGGATTTACAAAAGCAGGGGAATTGCAGTGGGTAGAAAATAATGGCATTACAAACCCGGGTATAACTGAACATGGAATAGGGTTTTTGGATACAGAGAGCAGAAAAGA
TGAATCCTCAAAAGGAAATATTATAATTACAGATGAGGACAATGACAGAAATACCAAAGCTACTGTAATGGCACTGGAAAAGTTTCCTAAAACATCCCTTGAGGATGTGGTTGAGCAGAAGTCTGTAGTATCAGAATTTCTAGTACCAGATGCAAGAGATTCTGACTTGAGCTTCCAAGGTATTAATGATACAGAATCAC
GGGCTCCACTTTCAAGGGAAGAATCAAAACATGACAGCAATGGACAGAGTCTGGAGCAATCAGTAGTGGATAAAAGACATCAATTTAAAGAAGAAGTTGTCCTTGACACATCCTTAGCAGTTCATCCCGCAACAACAGTAACAGTGGACAATTCTTTGCACTTGGATGTCAGCAAGAATAATCATGAGAATTCTTTTAAG
TGCGCTACTGATGATGTGTGGGGAAACATAAATGAATGGACGGAGAATTTTGAGCCGGCACTATGGGAAAAACTACTAGAGAAAGATGTCAAGGAAGCAATAAATCAGGAGACATACCAAGAACTGGGAAATGCTGGAACTTCACCTGTGAACCCATTCATTCAGCAATATAGGCTTTCTAACAAAGTGGAACCTCAAAT
ATTTTCTGTCGAGGGACAACATGTGCAGACATCTGAGCAGCTGAACAATGGCTCTACAGAAGTAGAGAGAAAACATCCTTCAAGCACTAAAGGAGTTGAGGAAGATCCTCTTGTTTCACAGGTTGGCTGGTTCGCTTCTTTTCCTGAAGTCACAAATGAATCTCATGAAAGAAAAGTTGATAATGAGTTAAGAACAGATG
CGTCAGAGATGATTCCTGGGGCACTTGAATTGCCTCACACACATTTGAGCAACTCTCCACCAAGATCATCAAATCCTAAGCCCGAAGAGAAAAAGAAAGGCAGCATCAAATCAATTTGGAATTTATGTGTATGCTGTTCTGGTGCTAGTTGATCTTTCTCTTGTCAATATGGTCCAGTGCAAGATAGCTTGATCAGTAGC
TAAAGTTGTGGCAAGAGATGACAAAATGTCAATTTTTTTACATCTCTCTTCCAAGGAAATTGAGGCTTGTTGGTGCATTTTATTTAATCAAACTCAACATGGATTTAGTCATCCTGTGTTATCTGTGGTGGCATATACCATGTTTGTAATGGTGAGTCTAGCGGTGTGTATTCTTGTAGCTTGAGATATTCCATTTTTTG
AGTCCATAATAGCAGCTATTTTTATTCTGTTTAACATAGCGAGCTTATAATGTGATTCCTTATGTTTTCCTTACTCTAAACTGAGTAAACTTCTCAGATATTTGAATATAGAGGCTACAAGAAAAGCTTTCAATATTCTAGAATCTAAATCCATATTCAGTGACGTCTGCTGTACAAATCAT
Intron 7 GTAATCAGTT ... GTCTAGAAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 47.54 | 16 | 11 | 18 |
| A2 | 52.68 | 11 | 9.5 | 15 |
| A3 | 64.44 | 8 | 17 | 12 |
| A4 | 73.33 | 2 | 4 | 7 |
| A5 | 51.64 | 11 | 5.5 | 18 |
| A6 | -1 | 0 | 0 | 0 |
| A7 | 36.84 | 6 | 3 | 4 |
| A8 | 75 | 1 | 4 | 2 |
| A9 | 52.94 | 4 | 3 | 6 |
| A10 | 61.9 | 4 | 7 | 6 |
>TRINITY_DN45360_c0_g1_i4 from sample A7 / Example spliced isoformCATAATTAAAATTACTGGACGACAATGACACTACAGCTAAACGGCCGGTCCGGGGCAGGGAAGCTTCGCCTTTATTGTACGTATATAAGGTAGATATTCCTCCCCGGATCCGGAGCGTCTCTCCAGTTCTGCAAACGGGTCCACCTATTTTCAGCTCAAAACTGCCAGTCAGATAAATCCAAATGCGAACAATGCCCGTG
GAGCTTCCAACTGGCTCATAAAGGTTTCTCACAGACTTTATATAGCCTTAATTATCCTCATATGTCAAACAATGATATAGTAATGGTACCAGCTACAATTCCAATCTGTGAAAACAAGTTCTTCCTCTCTGAGACTGATTAATAAGAAAAACCAGTGATCAACCTTGCTTTGTTAAAGCTGGCATTGTTACTCTAAGGGC
CCTACGTGATTTGAAGTATACCAGATCCGCTTGACAATTGAGTTATCGGGTACCTTTCCAACCCTCATTATTTTCACCAACTGTTTTTGGAGTTTCATGGATTGTGATTTTGTAACGCTTCTGGTTACATCTGCTTGATTTCTTATCCTTTTCCACCAATTGGGAGAGTAATTTTTCTCATTCTTTATCCTTTTCTATCA
ATTGGGTTAGACTTGGTCTATACATTTTGTCCAAGCTTTCACTTGTTTTTGAAATGCCGGAAGAAACTTGCCATCAGGTAGTGGTCATCCTTTGCATTAAGAAGGTATCTATTCCGTCCAAATAGCTTTAGCGCCTCATCCCTTTGAACTTCATGCTATGAAGGTGGGCCAGATCATAGCGAGAATTAAGCCTGGCAGGA
TCTGCCATGAAACTCTGATCTAGTGAACACTCGGCATTTGGATTCTGAAGAACATACCGAGATGGAAGAAAAACACATCAGCAGCGATCATCGTCATAACCACCACCATGATCATCATAAGCAGCAGCAAGCTCCATCAGGGACTGAGAACCATCATGCAAAACAGCCTCATGGTGTATGGGTTTGTCACCGGTGTGGGT
GGACGTATCCTAATCCACATCCAAGTGCTAAGCACCGGAGGAACCACAGGAAGCATTGTGGCAAAATAGAGGGCTTTACGTTGATTGCTTCAGGGGACAGAGAAACTCATGGAGGTTCATCAGACGAAGAGTTGACAGATGATGAACATAATCCAACAGATTACCAGAAGCCTATGTCATCCGAAGAAAAGATTATTTTG
CCTCAAACACAGGCATTGGCACCAACACCCGAGTTTAATGCAAGCAATCTTAATATAAATTCAAGTGAAGCTGATCCTGCAAAAGCTGGTCTGAAAAGGGGGGCTCCTGATAATGCGATTTTAAATATATCTCAGAGCACTGTTCTTGAAGCAAAAGAAAGCAATTTCGGTCAAATTGATCAAAATCGTAAGGAGGCTAC
TAAATCAATTTTGGGTGATGAGGTACATGGCTTGAATTTATCTGGTACTATAGAACCGTCAGATAATTTTGAAGGACACGATTTGGTCAGTTTTGAACAAAAGTCAAACATATTTCTCAAGGAGGTGCCAGATATGGACAGCAGCCACCTCATCATTCGAGACATTGGGCCTCAAGAATTTCCAGTTAAAGAGTCTCATA
CAATGTCAGATTATCCTGAGCTGAAAAACCAGAATAACCAAACAGCTAGATTTCTGCATGTGCCAGAAGACTCTATTCCACCCAGTGTTCAAGTCCATCCAGAATCTGGTGATATAGTTGATGGACTTGGTTTCCAAATCATGAATGACAGGGATAAACAGCACATTGGAATTGCTGGGGAGTGGCAAAATATTTTTGAG
GAAGTTAAAAGACCACTTGTGAAATCACAGGATACAGGTCATACTGAACACCCGAGGACTTTCAGCATGGCAGGTACAACTCCAATGCATGTGACACAGGAGTATAACTTGGGAATTAGTCCGAAGAAAGTAGGAATTGCATCAATTTTGGAACAAATTTCATTCAAGGGAGAAAATTCAGTTGAGTCAAAGATCAAAGT
TCCTTTAGCTGAGAAAACTCTGCTGTCTGCTGACCAGAAAACCTATGAGCTATTTCAGACAAGTTGTCAAGTTTCTGGCGATACGAAACAAAATGTCTCTATTTCTGAACAAGATATGGTACATGATGTGGCATACCCTTCTGTTTGTGGCAAAGGGTCCCTTGCAGAAAAATCTCAAGGATGTATTCTCAGTCAGAAAG
AAGACCCTCAATCTTTGGCATTTGAACCTGAAACAGGGAAGTTGCTTGAACAGCCATCTTCTGCAGCCTTAATTGAGTCAATTTTTGTAGATAATGTTCATCCTGAAGTGACAAAATGCATGATCTCTTCTCAAGATAAGAGCAGTGTAGAACAAGTGAAACTTGAAGATTCTGACTTTTCTCCTCCAATCAGTGAAGTT
TCTGAAATTCATAAAAATGGGAAATTCGAAAACGAAAGAAAGAACCCAAGTTCTGAAGGCCTTGACAAAACCTCATGTCAGAAGTTAGATTTACAGGTTTCAAGTGAACTGTTTATTTCTGATCAAGACCCAAGTTGTGCAGATAGCTTGACATCAGGATTTACAAAAGCAGGGGAATTGCAGTGGGTAGAAAATAATGG
CATTACAAACCCGGGTATAACTGAACATGGAATAGGGTTTTTGGATACAGAGAGCAGAAAAGATGAATCCTCAAAAGGAAATATTATAATTACAGATGAGGACAATGACAGAAATACCAAAGCTACTGTAATGGCACTGGAAAAGTTTCCTAAAACATCCCTTGAGGATGTGGTTGAGCAGAAGTCTGTAGTATCAGAAT
TTCTAGTACCAGATGCAAGAGATTCTGACTTGAGCTTCCAAGGTATTAATGATACAGAATCACGGGCTCCACTTTCAAGGGAAGAATCAAAACATGACAGCAATGGACAGAGTCTGGAGCAATCAGTAGTGGATAAAAGACATCAATTTAAAGAAGAAGTTGTCCTTGACACATCCTTAGCAGTTCATCCCGCAACAACA
GTAACAGTGGACAATTCTTTGCACTTGGATGTCAGCAAGAATAATCATGAGAATTCTTTTAAGTGCGCTACTGATGATGTGTGGGGAAACATAAATGAATGGACGGAGAATTTTGAGCCGGCACTATGGGAAAAACTACTAGAGAAAGATGTCAAGGAAGCAATAAATCAGGAGACATACCAAGAACTGGGAAATGCTGG
AACTTCACCTGTGAACCCATTCATTCAGCAATATAGGCTTTCTAACAAAGTGGAACCTCAAATATTTTCTGTCGAGGGACAACATGTGCAGACATCTGAGCAGCTGAACAATGGCTCTACAGAAGTAGAGAGAAAACATCCTTCAAGCACTAAAGGAGTTGAGGAAGATCCTCTTGTTTCACAGGTTGGCTGGTTCGCTT
CTTTTCCTGAAGTCACAAATGAATCTCATGAAAGAAAAGTTGATAATGAGTTAAGAACAGATGCGTCAGAGATGATTCCTGGGGCACTTGAATTGCCTCACACACATTTGAGCAACTCTCCACCAAGATCATCAAATCCTAAGCCCGAAGAGAAAAAGAAAGGCAGCATCAAATCAATTTGGAATTTATGTGTATGCTGT
TCTGGTGCTAGTTGATCTTTCTCTTGTCAATATGGTCCAGTGCAAGATAGCTTGATCAGTAGCTAAAGTTGTGGCAAGAGATGACAAAATGTCAATTTTTTTACATCTCTCTTCCAAGGAAATTGAGGCTTGTTGGTGCATTTTATTTAATCAAACTCAACATGGATTTAGTCATCCTGTGTTATCTGTGGTGGCATATA
CCATGTTTGTAATGGTGAGTCTAGCGGTGTGTATTCTTGTAGCTTGAGATATTCCATTTTTTGAGTCCATAATAGCAGCTATTTTTATTCTGTTTAACATAGCGAGCTTATAATGTGATTCCTTATGTTTTCCTTACTCTAAACTGAGTAAACTTCTCAGATATTTGAATATAGAGGCTACAAGAAAAGCTTTCAATATT
CTAGAATCTAAATCCATATTCAGTGACGTCTGCTGTACAAATCATAAG
>TRINITY_DN45360_c0_g1_i8 from sample A7 / Example unspliced isoform:CATAATTAAAATTACTGGACGACAATGACACTACAGCTAAACGGCCGGTCCGGGGCAGGGAAGCTTCGCCTTTATTGTACGTATATAAGGTAGATATTCCTCCCCGGATCCGGAGCGTCTCTCCAGTTCTGCAAACGGGTCCACCTATTTTCAGCTCAAAACTGCCAGTCAGATAAATCCAAATGCGAACAATGCCCGTG
GAGCTTCCAACTGGCTCATAAAGGTTTCTCACAGACTTTATATAGCCTTAATTATCCTCATATGTCAAACAATGATATAGTAATGGTACCAGCTACAATTCCAATCTGTGAAAACAAGTTCTTCCTCTCTGAGACTGATTAATAAGAAAAACCAGTGATCAACCTTGCTTTGTTAAAGCTGGCATTGTTACTCTAAGGGC
CCTACGTGATTTGAAGTATACCAGATCCGCTTGACAATTGAGTTATCGGGTACCTTTCCAACCCTCATTATTTTCACCAACTGTTTTTGGAGTTTCATGGATTGTGATTTTGTAACGCTTCTGGTTACATCTGCTTGATTTCTTATCCTTTTCCACCAATTGGGAGAGTAATTTTTCTCATTCTTTATCCTTTTCTATCA
ATTGGGTTAGACTTGGTCTATACATTTTGTCCAAGCTTTCACTTGTTTTTGAAATGCCGGAAGAAACTTGCCATCAGGTAGTGGTCATCCTTTGCATTAAGAAGGTATCTATTCCGTCCAAATAGCTTTAGCGCCTCATCCCTTTGAACTTCATGCTATGAAGGTGGGCCAGATCATAGCGAGAATTAAGCCTGgtaatc
agttttcctaattaaattcatttattattatccttttatatcctttcggttagattcggtccataaaatctttcaaatgataaaaatagggaccataagttaatttttattttttgagggccaattgagttagaaagcataatagaagaatttcttctagcattgcctgctttgtcgatctagtattgatataagtcaaa
ttgacctaagttagattggcagcgcttgtctagaaagGCAGGATCTGCCATGAAACTCTGATCTAGTGAACACTCGGCATTTGGATTCTGAAGAACATACCGAGATGGAAGAAAAACACATCAGCAGCGATCATCGTCATAACCACCACCATGATCATCATAAGCAGCAGCAAGCTCCATCAGGGACTGAGAACCATCAT
GCAAAACAGCCTCATGGTGTATGGGTTTGTCACCGGTGTGGGTGGACGTATCCTAATCCACATCCAAGTGCTAAGCACCGGAGGAACCACAGGAAGCATTGTGGCAAAATAGAGGGCTTTACGTTGATTGCTTCAGGGGACAGAGAAACTCATGGAGGTTCATCAGACGAAGAGTTGACAGATGATGAACATAATCCAAC
AGATTACCAGAAGCCTATGTCATCCGAAGAAAAGATTATTTTGCCTCAAACACAGGCATTGGCACCAACACCCGAGTTTAATGCAAGCAATCTTAATATAAATTCAAGTGAAGCTGATCCTGCAAAAGCTGGTCTGAAAAGGGGGGCTCCTGATAATGCGATTTTAAATATATCTCAGAGCACTGTTCTTGAAGCAAAAG
AAAGCAATTTCGGTCAAATTGATCAAAATCGTAAGGAGGCTACTAAATCAATTTTGGGTGATGAGGTACATGGCTTGAATTTATCTGGTACTATAGAACCGTCAGATAATTTTGAAGGACACGATTTGGTCAGTTTTGAACAAAAGTCAAACATATTTCTCAAGGAGGTGCCAGATATGGACAGCAGCCACCTCATCATT
CGAGACATTGGGCCTCAAGAATTTCCAGTTAAAGAGTCTCATACAATGTCAGATTATCCTGAGCTGAAAAACCAGAATAACCAAACAGCTAGATTTCTGCATGTGCCAGAAGACTCTATTCCACCCAGTGTTCAAGTCCATCCAGAATCTGGTGATATAGTTGATGGACTTGGTTTCCAAATCATGAATGACAGGGATAA
ACAGCACATTGGAATTGCTGGGGAGTGGCAAAATATTTTTGAGGAAGTTAAAAGACCACTTGTGAAATCACAGGATACAGGTCATACTGAACACCCGAGGACTTTCAGCATGGCAGGTACAACTCCAATGCATGTGACACAGGAGTATAACTTGGGAATTAGTCCGAAGAAAGTAGGAATTGCATCAATTTTGGAACAAA
TTTCATTCAAGGGAGAAAATTCAGTTGAGTCAAAGATCAAAGTTCCTTTAGCTGAGAAAACTCTGCTGTCTGCTGACCAGAAAACCTATGAGCTATTTCAGACAAGTTGTCAAGTTTCTGGCGATACGAAACAAAATGTCTCTATTTCTGAACAAGATATGGTACATGATGTGGCATACCCTTCTGTTTGTGGCAAAGGG
TCCCTTGCAGAAAAATCTCAAGGATGTATTCTCAGTCAGAAAGAAGACCCTCAATCTTTGGCATTTGAACCTGAAACAGGGAAGTTGCTTGAACAGCCATCTTCTGCAGCCTTAATTGAGTCAATTTTTGTAGATAATGTTCATCCTGAAGTGACAAAATGCATGATCTCTTCTCAAGATAAGAGCAGTGTAGAACAAGT
GAAACTTGAAGATTCTGACTTTTCTCCTCCAATCAGTGAAGTTTCTGAAATTCATAAAAATGGGAAATTCGAAAACGAAAGAAAGAACCCAAGTTCTGAAGGCCTTGACAAAACCTCATGTCAGAAGTTAGATTTACAGGTTTCAAGTGAACTGTTTATTTCTGATCAAGACCCAAGTTGTGCAGATAGCTTGACATCAG
GATTTACAAAAGCAGGGGAATTGCAGTGGGTAGAAAATAATGGCATTACAAACCCGGGTATAACTGAACATGGAATAGGGTTTTTGGATACAGAGAGCAGAAAAGATGAATCCTCAAAAGGAAATATTATAATTACAGATGAGGACAATGACAGAAATACCAAAGCTACTGTAATGGCACTGGAAAAGTTTCCTAAAACA
TCCCTTGAGGATGTGGTTGAGCAGAAGTCTGTAGTATCAGAATTTCTAGTACCAGATGCAAGAGATTCTGACTTGAGCTTCCAAGGTATTAATGATACAGAATCACGGGCTCCACTTTCAAGGGAAGAATCAAAACATGACAGCAATGGACAGAGTCTGGAGCAATCAGTAGTGGATAAAAGACATCAATTTAAAGAAGA
AGTTGTCCTTGACACATCCTTAGCAGTTCATCCCGCAACAACAGTAACAGTGGACAATTCTTTGCACTTGGATGTCAGCAAGAATAATCATGAGAATTCTTTTAAGTGCGCTACTGATGATGTGTGGGGAAACATAAATGAATGGACGGAGAATTTTGAGCCGGCACTATGGGAAAAACTACTAGAGAAAGATGTCAAGG
AAGCAATAAATCAGGAGACATACCAAGAACTGGGAAATGCTGGAACTTCACCTGTGAACCCATTCATTCAGCAATATAGGCTTTCTAACAAAGTGGAACCTCAAATATTTTCTGTCGAGGGACAACATGTGCAGACATCTGAGCAGCTGAACAATGGCTCTACAGAAGTAGAGAGAAAACATCCTTCAAGCACTAAAGGA
GTTGAGGAAGATCCTCTTGTTTCACAGGTTGGCTGGTTCGCTTCTTTTCCTGAAGTCACAAATGAATCTCATGAAAGAAAAGTTGATAATGAGTTAAGAACAGATGCGTCAGAGATGATTCCTGGGGCACTTGAATTGCCTCACACACATTTGAGCAACTCTCCACCAAGATCATCAAATCCTAAGCCCGAAGAGAAAAA
GAAAGGCAGCATCAAATCAATTTGGAATTTATGTGTATGCTGTTCTGGTGCTAGTTGATCTTTCTCTTGTCAATATGGTCCAGTGCAAGATAGCTTGATCAGTAGCTAAAGTTGTGGCAAGAGATGACAAAATGTCAATTTTTTTACATCTCTCTTCCAAGGAAATTGAGGCTTGTTGGTGCATTTTATTTAATCAAACT
CAACATGGATTTAGTCATCCTGTGTTATCTGTGGTGGCATATACCATGTTTGTAATGGTGAGTCTAGCGGTGTGTATTCTTGTAGCTTGAGATATTCCATTTTTTGAGTCCATAATAGCAGCTATTTTTATTCTGTTTAACATAGCGAGCTTATAATGTGATTCCTTATGTTTTCCTTACTCTAAACTGAGTAAACTTCT
CAGATATTTGAATATAGAGGCTACAAGAAAAGCTTTCAATATTCTAGAATCTAAATCCATATTCAGTGACGTCTGCTGTACAAATCATAAG
Intron 8 GTTTCTCACA ... CCTAAGTTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 68 | 8 | 20 | 14 |
| A2 | 72.22 | 5 | 12 | 14 |
| A3 | 58.97 | 8 | 14 | 9 |
| A4 | 78.57 | 3 | 14 | 8 |
| A5 | 70 | 6 | 14 | 14 |
| A6 | -1 | 0 | 0 | 0 |
| A7 | 61.54 | 5 | 13 | 3 |
| A8 | 50 | 2 | 2 | 2 |
| A9 | 84.62 | 1 | 5 | 6 |
| A10 | 75.76 | 4 | 21 | 4 |
>TRINITY_DN46758_c0_g1_i1 from sample A10 / Example spliced isoformCGCCGGGTATATAAGGTAGATATTCCTCCCCGGATCCGGAGCGTCTCTCCAGTTCTGCAAACGGGTCCCCTATTTTCAGCTCAAAACTGCCAGTCAGATAAATCCAAATGCGAACACGGCCCGTGGAGCTTCCAACTGGCTCATAAAGATTGGCAGCGCTTGTCTAGAAAGGCAGGATCTGCCATGAAACTCTGATCTAG
TGAACACTCGGCATTTGGATTCTGAAGAACATACCGAGATGGAAGAAAAACACATCAGCAGCGATCATCGTCATAACCACCACCATGATCATCATAAGCAGCAGCAAGCTCCATCAGGGACTGAGAACCATCATGCAAAACAGCCTCATGGTGTATGGGTTTGTCACCGGTGTGGGTGGACGTATCCTAATCCACATCCA
AGTGCTAAGCACCGGAGGAACCACAGGAAGCATTGTGGCAAAATAGAGGGCTTTACGTTGATTGCTTCAGGGGACAGAGAAACTCATGGAGGTTCATCAGACGAAGAGTTGACAGATGATGAACATAATCCAACAGATTACCAGAAGCCTATGTCATCCGAAGAAAAGATTATTTTGCCTCAAACACAGGCATTGGCACC
AACACCCGAGTTTAATGCAAGCAATCTTAATATAAATTCAAGTGAAGCTGATCCTGCAAAAGCTGGTCTGAAAAGGGGGGCTCCTGATAATGCGATTTTAAATATATCTCAGAGCACTGTTCTTGAAGCAAAAGAAAGCAATTTCGGTCAAATTGATCAAAATCGTAAGGAGGCTACTAAATCAATTTTGGGTGATGAGG
TACATGGCTTGAATTTATCTGGTACTATAGAACCGTCAGATAATTTTGAAGGACACGATTTGGTCAGTTTTGAACAAAAGTCAAACATATTTCTCAAGGAGGTGCCAGATATGGACAGCAGCCACCTCATCATTCGAGACATTGGGCCTCAAGAATTTCCAGTTAAAGAGTCTCATACAATGTCAGATTATCCTGAGCTG
AAAAACCAGAATAACCAAACAGCTAGATTTCTGCATGTGCCAGAAGACTCTATTCCACCCAGTGTTCAAGTCCATCCAGAATCTGGTGATATAGTTGATGGACTTGGTTTCCAAATCATGAATGACAGGGATAAACAGCACATTGGAATTGCTGGGGAGTGGCAAAATATTTTTGAGGAAGTTAAAAGACCACTTGTGAA
ATCACAGGATACAGGTCATACTGAACACCCGAGGACTTTCAGCATGGCAGGTACAACTCCAATGCATGTGACACAGGAGTATAACTTGGGAATTAGTCCGAAGAAAGTAGGAATTGCATCAATTTTGGAACAAATTTCATTCAAGGGAGAAAATTCAGTTGAGTCAAAGATCAAAGTTCCTTTAGCTGAGAAAACTCTGC
TGTCTGCTGACCAGAAAACCTATGAGCTATTTCAGACAAGTTGTCAAGTTTCTGGCGATACGAAACAAAATGTCTCTATTTCTGAACAAGATATGGTACATGATGTGGCATACCCTTCTGTTTGTGGCAAAGGGTCCCTTGCAGAAAAATCTCAAGGATGTATTCTCAGTCAGAAAGAAGACCCTCAATCTTTGGCATTT
GAACCTGAAACAGGGAAGTTGCTTGAACAGCCATCTTCTGCAGCCTTAATTGAGTCAATTTTTGTAGATAATGTTCATCCTGAAGTGACAAAATGCATGATCTCTTCTCAAGATAAGAGCAGTGTAGAACAAGTGAAACTTGAAGATTCTGACTTTTCTCCTCCAATCAGTGAAGTTTCTGAAATTCATAAAAATGGGAA
ATTTGAAAACGAAAGAAAGAACCCAAGTTCTGAAGGCCTTGACAAAACCTCATGTCAGAAGTTAGATTTACAGGTTTCAAGTGAACTGTTTATTTCTGATCAAGACCCAAGTTGTGCAGATAGCTTGACATCAGGATTTACAAAAGCAGGGGAACTGCAGTGGGTAGAAAATAATGGCATTACAAACCCGGGTATAACTG
AACATGGAATAGGGTTTTTGGATACAGAGAGCAGAAAAGATGAATCCTCAAAAGGAAATATTATAATTACAGATGAGGACAATGACAGAAATACCAAAGCTACTGTAATGGCACTGGAAAAGTTTCCTAAAACATCCCTTGAGGATGTGGTTGAGCAGAAGTCTGTAGTATCAGAATTTCTAGTACCAGATGCAAGAGAT
TCTGACTTGAGCTTCCAAGGTATTAATGATACAGAATCACGGGCTCCACTTTCAAGGGAAGAATCAAAACATGACAGCAATGGACAGAGTCTGGAGCAATCAGTAGTGGATAAAAGACATCAATTTAAAGAAGAAGTTGTCCTTGACACATCCTTAGCAGTTCATCCCGCAACAACAGTAACAGTGGACAATTCTTTGCA
CTTGGATGTCAGCAAGAATAATCATGAGAATTCTTTTAAGTGCGCTACTGATGATGTGTGGGGAAACATAAATGAATGGACGGAGAATTTTGAGCCGGCACTATGGGAAAAACTACTAGAGAAAGATGTCAAGGAAGCAATAAATCAGGAGACATACCAAGAACTGGGAAATGCTGGAACTTCACCTGTGAACCCATTCA
TTCAGCAATATAGGCTTTCTAACAAAGTGGAACCTCAAATATTTTCTGTCGAGGGACAACATGTGCAGACATCTGAGCAGCTGAACAATGGCTCTACAGAAGTAGAGAGAAAACATCCTTCAAGCACTAAAGGAGTTGAGGAAGATCCTCTTGTTTCACAGGTTGGCTGGTTCGCTTCTTTTCCTGAAGTCACAAATGAA
TCTCATGAAAGAAAAGTTGATAATGAGTTAAGAACAGATGCGTCAGAGATGATTCCTGGGGCACTTGAATTGCCTCACACACATTTGAGCAACTCTCCACCAAGATCATCAAATCCTAAGCCCGAAGAGAAAAAGAAAGGCAGCATCAAATCAATTTGGAATTTATGTGTATGCTGTTCTGGTGCTAGTTGATCTTTCTC
TTGTCAATATGGTCCAGTGCAAGATAGCTTGATCAGTAGCTAAAGTTGTGGCAAGAGATGACAAAATGCCAATTTTTTTACATCTCTCTTCCAAGGAAATTGAGGCTTGTTGGTGCATTTTATTTAATCAAACTCAACATGGATTTAGTCATCCTGTGTTATCTGTGGTGGCATATACCATGTTTGTAATGGTGAGTCTA
GCGGTGTGTATTCTTGTAGCTTGAGATATTCCATTTTTTGAGTCCATAATAGCAGCTATTTTTATTCTGTTTAACATAGCGAGCTTATAATGTGATTCCTTATGTTTTCCTTACTCTAAACTGAGTAAACTTCTCAGATATTTGAATATAGAGGCTACAAGAAAAGCTTTCAATATTCTAGAATCTAAATCCATATTCAG
TGACGTCTGCTGTACAAATCATAATGCAAT
>TRINITY_DN46758_c0_g1_i3 from sample A10 / Example unspliced isoform:CGCCGGGTATATAAGGTAGATATTCCTCCCCGGATCCGGAGCGTCTCTCCAGTTCTGCAAACGGGTCCCCTATTTTCAGCTCAAAACTGCCAGTCAGATAAATCCAAATGCGAACAATGCCCGTGGAGCTTCCAACTGGCTCATAAAGgtttctcacagactttatatagccttaattatcctcatatgtcaaacaatga
tatagtaatggtaccagctacaattccaatctgtgaaaacaagttcttcctctctgagactgattaataagaaaaaccagtgatcaaccttactttgttaaagctggcattgttactctaagggccctacgtgatttgaagtataccagatccgcttgacaattgagttatcggacttggtctatacattttgtccaagc
tttcacttgtttttgaaatgccggaagaaacttgccatcaggtagtggtcatcctttgcattaagaagggtatctattccgtccaaatagctttagcgcctcatccctttgaacttcatgctatgaaggtgggccagatcatagcgagaattaagcctggtaatcagttttcctaattaaattcatttattattatcctt
ttatatcctttcggttagattcggtccataaaatctttcaaatgataaaaatagggaccataagttaatttttattttttgagggccaattgagttagaaagcataatagaagaatttcttctagcattgcctgctttgtcgatctagtattgatataagtcaaattgacctaagttagATTGGCAGCGCTTGTCTAGAA
AGGCAGGATCTGCCATGAAACTCTGATCTAGTGAACACTCGGCATTTGGATTCTGAAGAACATACCGAGATGGAAGAAAAACACATCAGCAGCGATCATCGTCATAACCACCACCATGATCATCATAAGCAGCAGCAAGCTCCATCAGGGACTGAGAACCATCATGCAAAACAGCCTCATGGTGTATGGGTTTGTCACCG
GTGTGGGTGGACGTATCCTAATCCACATCCAAGTGCTAAGCACCGGAGGAACCACAGGAAGCATTGTGGCAAAATAGAGGGCTTTACGTTGATTGCTTCAGGGGACAGAGAAACTCATGGAGGTTCATCAGACGAAGAGTTGACAGATGATGAACATAATCCAACAGATTACCAGAAGCCTATGTCATCCGAAGAAAAGA
TTATTTTGCCTCAAACACAGGCATTGGCACCAACACCCGAGTTTAATGCAAGCAATCTTAATATAAATTCAAGTGAAGCTGATCCTGCAAAAGCTGGTCTGAAAAGGGGGGCTCCTGATAATGCGATTTTAAATATATCTCAGAGCACTGTTCTTGAAGCAAAAGAAAGCAATTTCGGTCAAATTGATCAAAATCGTAAG
GAGGCTACTAAATCAATTTTGGGTGATGAGGTACATGGCTTGAATTTATCTGGTACTATAGAACCGTCAGATAATTTTGAAGGACACGATTTGGTCAGTTTTGAACAAAAGTCAAACATATTTCTCAAGGAGGTGCCAGATATGGACAGCAGCCACCTCATCATTCGAGACATTGGGCCTCAAGAATTTCCAGTTAAAGA
GTCTCATACAATGTCAGATTATCCTGAGCTGAAAAACCAGAATAACCAAACAGCTAGATTTCTGCATGTGCCAGAAGACTCTATTCCACCCAGTGTTCAAGTCCATCCAGAATCTGGTGATATAGTTGATGGACTTGGTTTCCAAATCATGAATGACAGGGATAAACAGCACATTGGAATTGCTGGGGAGTGGCAAAATA
TTTTTGAGGAAGTTAAAAGACCACTTGTGAAATCACAGGATACAGGTCATACTGAACACCCGAGGACTTTCAGCATGGCAGGTACAACTCCAATGCATGTGACACAGGAGTATAACTTGGGAATTAGTCCGAAGAAAGTAGGAATTGCATCAATTTTGGAACAAATTTCATTCAAGGGAGAAAATTCAGTTGAGTCAAAG
ATCAAAGTTCCTTTAGCTGAGAAAACTCTGCTGTCTGCTGACCAGAAAACCTATGAGCTATTTCAGACAAGTTGTCAAGTTTCTGGCGATACGAAACAAAATGTCTCTATTTCTGAACAAGATATGGTACATGATGTGGCATACCCTTCTGTTTGTGGCAAAGGGTCCCTTGCAGAAAAATCTCAAGGATGTATTCTCAG
TCAGAAAGAAGACCCTCAATCTTTGGCATTTGAACCTGAAACAGGGAAGTTGCTTGAACAGCCATCTTCTGCAGCCTTAATTGAGTCAATTTTTGTAGATAATGTTCATCCTGAAGTGACAAAATGCATGATCTCTTCTCAAGATAAGAGCAGTGTAGAACAAGTGAAACTTGAAGATTCTGACTTTTCTCCTCCAATCA
GTGAAGTTTCTGAAATTCATAAAAATGGGAAATTTGAAAACGAAAGAAAGAACCCAAGTTCTGAAGGCCTTGACAAAACCTCATGTCAGAAGTTAGATTTACAGGTTTCAAGTGAACTGTTTATTTCTGATCAAGACCCAAGTTGTGCAGATAGCTTGACATCAGGATTTACAAAAGCAGGGGAACTGCAGTGGGTAGAA
AATAATGGCATTACAAACCCGGGTATAACTGAACATGGAATAGGGTTTTTGGATACAGAGAGCAGAAAAGATGAATCCTCAAAAGGAAATATTATAATTACAGATGAGGACAATGACAGAAATACCAAAGCTACTGTAATGGCACTGGAAAAGTTTCCTAAAACATCCCTTGAGGATGTGGTTGAGCAGAAGTCTGTAGT
ATCAGAATTTCTAGTACCAGATGCAAGAGATTCTGACTTGAGCTTCCAAGGTATTAATGATACAGAATCACGGGCTCCACTTTCAAGGGAAGAATCAAAACATGACAGCAATGGACAGAGTCTGGAGCAATCAGTAGTGGATAAAAGACATCAATTTAAAGAAGAAGTTGTCCTTGACACATCCTTAGCAGTTCATCCCG
CAACAACAGTAACAGTGGACAATTCTTTGCACTTGGATGTCAGCAAGAATAATCATGAGAATTCTTTTAAGTGCGCTACTGATGATGTGTGGGGAAACATAAATGAATGGACGGAGAATTTTGAGCCGGCACTATGGGAAAAACTACTAGAGAAAGATGTCAAGGAAGCAATAAATCAGGAGACATACCAAGAACTGGGA
AATGCTGGAACTTCACCTGTGAACCCATTCATTCAGCAATATAGGCTTTCTAACAAAGTGGAACCTCAAATATTTTCTGTCGAGGGACAACATGTGCAGACATCTGAGCAGCTGAACAATGGCTCTACAGAAGTAGAGAGAAAACATCCTTCAAGCACTAAAGGAGTTGAGGAAGATCCTCTTGTTTCACAGGTTGGCTG
GTTCGCTTCTTTTCCTGAAGTCACAAATGAATCTCATGAAAGAAAAGTTGATAATGAGTTAAGAACAGATGCGTCAGAGATGATTCCTGGGGCACTTGAATTGCCTCACACACATTTGAGCAACTCTCCACCAAGATCATCAAATCCTAAGCCCGAAGAGAAAAAGAAAGGCAGCATCAAATCAATTTGGAATTTATGTG
TATGCTGTTCTGGTGCTAGTTGATCTTTCTCTTGTCAATATGGTCCAGTGCAAGATAGCTTGATCAGTAGCTAAAGTTGTGGCAAGAGATGACAAAATGCCAATTTTTTTACATCTCTCTTCCAAGGAAATTGAGGCTTGTTGGTGCATTTTATTTAATCAAACTCAACATGGATTTAGTCATCCTGTGTTATCTGTGGT
GGCATATACCATGTTTGTAATGGTGAGTCTAGCGGTGTGTATTCTTGTAGCTTGAGATATTCCATTTTTTGAGTCCATAATAGCAGCTATTTTTATTCTGTTTAACATAGCGAGCTTATAATGTGATTCCTTATGTTTTCCTTACTCTAAACTGAGTAAACTTCTCAGATATTTGAATATAGAGGCTACAAGAAAAGCTT
TCAATATTCTAGAATCTAAATCCATATTCAGTGACGTCTGCTGTACAAATCATAATGCAAT