sp|Q9ZPR1|CD48B_ARATH ----> Cell division control protein 48 homolog B
Intron 1 GTACTTTATG ... TGGAAGGAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 71.43 | 4 | 8.8 | 11.3 |
| A2 | 49.13 | 3.5 | 3.3 | 3 |
| A3 | 53.66 | 13.5 | 8.3 | 23 |
| A4 | 51.73 | 5.5 | 4.8 | 7 |
| A5 | 50 | 2 | 1 | 3 |
| A6 | 68.3 | 22.5 | 44.3 | 51 |
| A7 | 65.02 | 21.5 | 33.3 | 46 |
| A8 | 58.52 | 36 | 41.8 | 58.8 |
| A9 | 60.39 | 25.5 | 26.8 | 51 |
| A10 | 61.12 | 21.5 | 29.3 | 38 |
>TRINITY_DN44568_c0_g1_i7 from sample A10 / Example spliced isoformGCTGTTTCGATCTCTGGGTAGATAGTACGAGGGACGTTGGTGTTGTAATTTGTTCAGTGTGTTTTTCATGGCAGTGACAGAAGAAGCAGAAGGGGATGGTTGGAAGGCAGAAGAAGCCATTGCAGGCAATAAAAAAGCACTGCAAGGGCTGAGGGAGCTTTTGTTATGGCCGCTTATTTATTCAAGAGAAGCAAACATTC
TGGGGTTAAGGTGGCCCAAAGGTTTACTGTTATATGGGCCTCCAGGCACTGGCAAGACAAGCTTGATCTATGCGATTGTTCGAGAATGTGGTGCCCATCTCACTCTGATAAGTGCAGGTCTAGTTCATAGGGCATATGCTGGAGAAAGTGAACGGATTTTGCGGGAGGCTTTTGCCGAAGCATCATCGCAAACTGCAGCA
GGTAGACCAGCCATCATTTTCATCGATGAAATTGATGCACTTTGTCCACGTCGTGACTCCAGACGGGAGCAAGAATCTCGTATAGTTGCCCAACTTCTTACGCTTATGGATGGCACCAAAAGTTCATTGGGATCTCTGGAGAGAGTGGTTGTGGTAGCATCAACAAACAGAGTTAATGCAATTGATCCAGCATTGCGAAG
ACCAGGGCGTTTTGATGCTGAAATTGAAGTTAGTGCACCTAATGAGGAAGAGCGTTTGGAGATTCTTCAGCTCCATGCAAGAAATCTTCCACTTGATCGAAGTGTCAATCTTCACGCTGTAGCTGCATCTTGTAATGGATATGTTGGTGCTGATTTAGCAGCTTTATGTCGTGAGGCTGCAATGTCAACAATTCGAAAAT
CTTCTGGTTTTCAGGAAGAAGAGTTGCCTAGTATAATGATGGAAGACTGGGAGGTTGCACGTTCAAAGGTTGGCCCCAGCATAGTCAGAGGTGTCATTGCTGAAGTGCCAAAAGTCTCCTGGGAAGACATTGGAGGCCTGCATGATGTTAAGAAGAAGCTTCAGCAGGCTGTGGAATGGCCTATAAAACATGCTGCTGCA
TTTGCAAGACTGGGGATTTCCCCTGCTCGTGGAGTTCTCTTACATGGTCCACCAGGTTGCTCTAAAACTACTCTTGTTAATGCTGCAGCTCATGCTTCCCAAGCAAACCTGTTCTCATTAAGTGGGGCAGAGCTTTACTCAATGTATGTTGGAGAAGGTGAAGCTTTACTACGTGAGACATTTCAAAGAGCACGCTTAGC
GGCTCCCAGTATAATATTTTTTGATGAAGCTGATGCTATTGCAGCAAAGCGGGATGGAAGAGAAGAGGAAAATTCCAGTGGTAATGGTGCAGTTGGAGAAAGGCTGTTGTCTACCTTACTAACTGAGATTGATGGGCTTGAGATCACAAAAGGAGTTCTAGTGTTGGGAGCTACAAATCGTCCTGAAGCAATTGATGCTG
CACTTATGCGTCCTGGTCGCTTTGATTTGAATTGAAGTACTACGTGTACATACTCGTAATATGAAGCTGGAAAAAAATGTTGATCTGTCACAAATTGCTAAACAGACGCAGTTTTTCACTGGAGCAGAGCTAGCAGGTCTATGCAGGGAAGCGGCTATAGTAGCTCTCAGGGAAGACATCTGTGCCGATACTGTTTGTAG
TCGGCATTTTGAACTTGCAAGAAACTCTTTGCGACCATCATTGTCAGAAGTTCAGATTGCTAGCTATTCTTCTTTTATGAAGCATAGAAGAAAAACTCTTCTAAACACATTAACTTGAATGACATACTGTTAACACAAGCTTGGCAGTGATTATTGGTGTTGGAAGTATTTGGTTAGAAAGCCCAAAAATACTGGGAAGA
AGCAAGAAGTAATTACTTGAAAACATTACATACTTGGCATCAGTGACTTTAGAATTCTGGTGGTCTGGATGATCGTGATGCAGACGCGATCCTTTGTGATGCTTAGCTGTATTCAAAATCTGATGTCTTAGCAGTGCAGAGTTGAAGAAGATTGACATATTGTTGTACCCTTCAAGTTTTTCATCTGCATATTTATACTA
GGAAAAATTCCTTTTGCTGTTTAGTTGCAAATAGTTATATAAAATTACGTGGTTTAGCTATTTGATGGCTGCAAAGGTACCAGATGTTAATCCTACGTTTACAATATTTATATTAGCTGC
>TRINITY_DN44568_c0_g1_i1 from sample A10 / Example unspliced isoform:GCTGTTTCGATCTCTGGGTAGATAGTACGAGGGACGTTGGTGTTGTAATTTGTTCAGTGTGTTTTTCATGGCAGTGACAGAAGAAGCAGAAGGGGATGGTTGGAAGGCAGAAGAAGCCATTGCAGGCAATAAAAAAGCACTGCAAGGGCTGAGGGAGCTTTTGTTATGGCCGCTTATTTATTCAAGAGAAGCAAACATTC
TGGGGTTAAGGTGGCCCAAAGGTTTACTGTTATATGGGCCTCCAGGCACTGGCAAGACAAGCTTGATCTATGCGATTGTTCGAGAATGTGGTGCCCATCTCACTCTGATAAGTGCAGGTCTAGTTCATAGGGCATATGCTGGAGAAAGTGAACGGATTTTGCGGGAGGCTTTTGCCGAAGCATCATCGCAAACTGCAGCA
GGTAGACCAGCCATCATTTTCATCGATGAAATTGATGCACTTTGTCCACGTCGTGACTCCAGACGGGAGCAAGAATCTCGTATAGTTGCCCAACTTCTTACGCTTATGGATGGCACCAAAAGTTCATTGGGATCTCTGGAGAGAGTGGTTGTGGTAGCATCAACAAACAGAGTTAATGCAATTGATCCAGCATTGCGAAG
ACCAGGGCGTTTTGATGCTGAAATTGAAGTTAGTGCACCTAATGAGGAAGAGCGTTTGGAGATTCTTCAGCTCCATGCAAGAAATCTTCCACTTGATCGAAGTGTCAATCTTCACGCTGTAGCTGCATCTTGTAATGGATATGTTGGTGCTGATTTAGCAGCTTTATGTCGTGAGGCTGCAATGTCAACAATTCGAAAAT
CTTCTGGTTTTCAGGAAGAAGAGTTGCCTAGTATAATGATGGAAGACTGGGAGGTTGCACGTTCAAAGGTTGGCCCCAGCATAGTCAGAGGTGTCATTGCTGAAGTGCCAAAAGTCTCCTGGGAAGACATTGGAGGCCTGCATGATGTTAAGAAGAAGCTTCAGCAGGCTGTGGAATGGCCTATAAAACATGCTGCTGCA
TTTGCAAGACTGGGGATTTCCCCTGCTCGTGGAGTTCTCTTACATGGTCCACCAGGTTGCTCTAAAACTACTCTTGTTAATGCTGCAGCTCATGCTTCCCAAGCAAACCTGTTCTCATTAAGTGGGGCAGAGCTTTACTCAATGTATGTTGGAGAAGGTGAAGCTTTACTACGTGAGACATTTCAAAGAGCACGCTTAGC
GGCTCCCAGTATAATATTTTTTGATGAAGCTGATGCTATTGCAGCAAAGCGGGATGGAAGAGAAGAGGAAAATTCCAGTGGTAATGGTGCAGTTGGAGAAAGGCTGTTGTCTACCTTACTAACTGAGATTGATGGGCTTGAGATCACAAAAGGAGTTCTAGTGTTGGGAGCTACAAATCGTCCTGAAGCAATTGATGCTG
CACTTATGCGTCCTGGTCGCTTTGATTTGgtactttatgtgccaccacctgatttggaaggaagAATTGAAGTACTACGTGTACATACTCGTAATATGAAGCTGGAAAAAAATGTTGATCTGTCACAAATTGCTAAACAGACGCAGTTTTTCACTGGAGCAGAGCTAGCAGGTCTATGCAGGGAAGCGGCTATAGTAGCT
CTCAGGGAAGACATCTGTGCCGATACTGTTTGTAGTCGGCATTTTGAACTTGCAAGAAACTCTTTGCGACCATCATTGTCAGAAGTTCAGATTGCTAGCTATTCTTCTTTTATGAAGCATAGAAGAAAAACTCTTCTAAACACATTAACTTGAATGACATACTGTTAACACAAGCTTGGCAGTGATTATTGGTGTTGGAA
GTATTTGGTTAGAAAGCCCAAAAATACTGGGAAGAAGCAAGAAGTAATTACTTGAAAACATTACATACTTGGCATCAGTGACTTTAGAATTCTGGTGGTCTGGATGATCGTGATGCAGACGCGATCCTTTGTGATGCTTAGCTGTATTCAAAATCTGATGTCTTAGCAGTGCAGAGTTGAAGAAGATTGACATATTGTTG
TACCCTTCAAGTTTTTCATCTGCATATTTATACTAGGAAAAATTCCTTTTGCTGTTTAGTTGCAAATAGTTATATAAAATTACGTGGTTTAGCTATTTGATGGCTGCAAAGGTACCAGATGTTAATCCTACGTTTACAATATTTATATTAGCTGC
Intron 2 GTAAGAGTTA ... CCAAACGTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 10.55 | 8.5 | 0 | 1 |
| A2 | 35 | 2.5 | 0 | 1 |
| A3 | 19.09 | 8.5 | 1 | 2 |
| A4 | 18.34 | 4.5 | 1 | 1 |
| A5 | 50 | 1 | 0 | 1 |
| A6 | 14.62 | 41.5 | 1 | 7 |
| A7 | 30.95 | 31.5 | 3 | 14 |
| A8 | 11.35 | 39.5 | 1 | 5 |
| A9 | 23.2 | 26.5 | 0 | 8 |
| A10 | 21.34 | 29.5 | 6 | 8 |
>TRINITY_DN41505_c0_g1_i3 from sample A7 / Example spliced isoformCTCTGGGTAGATAGTACGAGGGACGTTGGTGTTGTAATTTGTTCAGTGTGTTTTTCATGGCAGTGACAGAAGAAGCAGAAGGGGATGGTTGGAAGGCAGAAGAAGCCATTGCAGGCAATAAAAAAGCACTGCAAGGGCTGAGGGAGCTTTTGTTATGGCCGCTTATTTATTCAAGAGAAGCAAACATTCTGGGGTTAAGG
TGGCCCAAAGGTTTACTGTTATATGGGCCTCCAGGCACTGGCAAGACAAGCTTGATCTATGCGATTGTTCGAGAATGTGGTGCCCATCTCACTCTGATAAGTGCAGGTCTAGTTCATAGGGCATATGCTGGAGAAAGTGAACGGATTTTGCGGGAGGCTTTTGCCGAAGCATCATCGCAAACTGCAGCAGGTAGACCAGC
CATCATTTTCATCGATGAAATTGATGCACTTTGTCCACGTCGTGACTCCAGACGGGAGCAAGAATCTCGTATAGTTGCCCAACTTCTTACGCTTATGGATGGCACCAAAAGTTCATTGGGATCTCTGGAGAGAGTGGTTGTGGTAGCATCAACAAACAGAGTTAATGCAATTGATCCAGCATTGCGAAGACCAGGGCGTT
TTGATGCTGAAATTGAAGTTAGTGCACCTAATGAGGAAGAGCGTTTGGAGATTCTTCAGCTCCATGCAAGAAATCTTCCACTTGATCGAAGTGTCAATCTTCACGCTGTAGCTGCATCTTGTAATGGATATGTTGGTGCTGATTTAGCAGCTTTATGTCGTGAGGCTGCAATGTCAACAATTCGAAAATCTTCTGGTTTT
CAGGAAGAAGAGTTGCCTAGTATAATGATGGAAGACTGGGAGGTTGCACGTTCAAAGGTTGGCCCCAGCATAGTCAGAGGTGTCATTGCTGAAGTGCCAAAAGTCTCCTGGGAAGACATTGGAGGCCTGCATGATGTTAAGAAGAAGCTTCAGCAGGCTGTGGAATGGCCTATAAAACATGCTGCTGCATTTGCAAGACT
GGGGATTTCCCCTGCTCGTGGAGTTCTCTTACATGGTCCACCAGGTTGCTCTAAAACTACTCTTGTTAATGCTGCAGCTCATGCTTCCCAAGCAAACCTGTTCTCATTAAGTGGGGCAGAGCTTTACTCAATGTATGTTGGAGAAGGTGAAGCTTTACTACGTGAGACATTTCAAAGAGCACGCTTAGCGGCTCCCAGTA
TAATATTTTTTGATGAAGCTGATGCTATTGCAGCAAAGCGGGATGGAAGAGAAGAGGAAAATTCCAGTGGTAATGGTGCAGTTGGAGAAAGGCTGTTGTCTACCTTACTAACTGAGATTGATGGGCTTGAGATCACAAAAGGAGTTCTAGTGTTGGGAGCTACAAATCGTCCTGAAGCAATTGATGCTGCACTTATGCGT
CCTGGTCGCTTTGATTTGGTACTTTATGTGCCACCACCTGATTTGGAAGGAAGAATTGAAGTACTACGTGTACATACTCGTAATATGAAGCTGGAAAAAAATGTTGATCTGTCACAAATTGCTAAACAGACGCAGTTTTTCACTGGAGCAGAGCTAGCAGGTCTATGCAGGGAAGCGGCTATAGTAGCTCTCAGGGAAGA
CATCTGTGCCGATACTGTTTGTAGTCGGCATTTTGAACTTGCAAGAAACTCTTTGCGACCATCATTGTCAGAAGTTCAGATTGCTAGCTATTCTTCTTTTATGAAGCATAGAAGAAAAACTCTTCTAAACACATTAACTTGAATGACATACTGTTAACACAAGCTTGGCAGTGATTATTGGTGTTGGAAGTATTTGGTTA
GAAAGCCCAAAAATACTGGGAAGAAGCAAGAAGTAATTACTTGAAAACATTACATACTTGGCATCAGTGACTTTAGAATTCTGGTGGTCTGGATGATCGTGATGCAGACGCGATCCTTTGTGATGCTTAGCTGTATTCAAAATCTGATGTCTTAGCAGTGCAGAGTTGAAGAAGATTGACATATTGTTGTACCCTTCAAG
TTTTTCATCTGCATATTTATACTAGGAAAAATTCCTTTTGCTGTTTAGTTGCAAATAGTTATATAAAATTACGTGGTTTAGCT
>TRINITY_DN41505_c0_g1_i2 from sample A7 / Example unspliced isoform:CTCTGGGTAGATAGTACGAGGGACGTTGGTGTTGTAATTTGTTCAGTGTGTTTTTCATGGCAGTGACAGAAGAAGCAGAAGGGGATGGTTGGAAGGCAGAAGAAGCCATTGCAGGCAATAAAAAAGCACTGCAAGGGCTGAGGGAGCTTTTGTTATGGCCGCTTATTTATTCAAGAGAAGCAAACATTCTGGGGTTAAGG
TGGCCCAAAGGTTTACTGTTATATGGGCCTCCAGGCACTGGCAAGACAAGCTTGATCTATGCGATTGTTCGAGAATGTGGTGCCCATCTCACTCTGATAAGTGCAGGTCTAGTTCATAGGGCATATGCTGGAGAAAGTGAACGGATTTTGCGGGAGGCTTTTGCCGAAGCATCATCGCAAACTGCAGCAGGTAGACCAGC
CATCATTTTCATCGATGAAATTGATGCACTTTGTCCACGTCGTGACTCCAGACGGGAGCAAGAATCTCGTATAGTTGCCCAACTTCTTACGCTTATGGATGGCACCAAAAGTTCATTGGGATCTCTGGAGAGAGTGGTTGTGGTAGCATCAACAAACAGAGTTAATGCAATTGATCCAGCATTGCGAAGACCAGGGCGTT
TTGATGCTGAAATTGAAGTTAGTGCACCTAATGAGGAAGAGCGTTTGGAGATTCTTCAGCTCCATGCAAGAAATCTTCCACTTGATCGAAGTGTCAATCTTCACGCTGTAGCTGCATCTTGTAATGGATATGTTGGTGCTGATTTAGCAGCTTTATGTCGTGAGGCTGCAATGTCAACAATTCGAAAATCTTCTGGTTTT
CAGGAAGAAGAGTTGCCTAGTATAATGATGGAAGACTGGGAGGTTGCACGTTCAAAGGTTGGCCCCAGCATAGTCAGAGGTGTCATTGCTGAAGTGCCAAAAGTCTCCTGGGAAGACATTGGAGGCCTGCATGATGTTAAGAAGAAGCTTCAGCAGGCTGTGGAATGGCCTATAAAACATGCTGCTGCATTTGCAAGACT
GGGGATTTCCCCTGCTCGTGGAGTTCTCTTACATGGTCCACCAGGTTGCTCTAAAACTACTCTTGTTAATGCTGCAGCTCATGCTTCCCAAGCAAACCTGTTCTCATTAAGTGGGGCAGAGCTTTACTCAATGTATGTTGGAGAAGGTGAAGCTTTACTACGTGAGACATTTCAAAGAGCACGCTTAGCGGCTCCCAGTA
TAATATTTTTTGATGAAGCTGATGCTATTGCAGCAAAGCGGGATGGAAGAGAAGAGGAAAATTCCAGTGGTAATGGTGCAGTTGGAGAAAGGCTGTTGTCTACCTTACTAACTGAGATTGATGGGCTTGAGATCACAAAAGTATACGTGACACATGCAACCTTCTATCTTCATGTCTATATTTGCAAGAAGAGAAGGAAG
GATTTTCTTACACAGCATATTTTATCAGGACCTTTTTTAGTCTCTGATATGTCATGCTTGTATTTCCACTTATTACACCTCATATGCCTTTTTTTATGGTCTTTTATTGTTCTCTCATATTCAAAGATAGATAGCAGTTCTGGTCAAGTATTTAATTTTTACTGCTAGAAGTATTTTATGATTTTGGTATTTTGGTAATT
AATTTATCTCAATTTCTTAGGATAGTAAGAAAACAGTTATGTAGTGTGTGCACTTTTTGGTTTGCATACAGGGAGTTCTAGTGTTGGGAGCTACAAATCGTCCTGAAGCAATTGATGCTGCACTTATGCGTCCTGGTCGCTTTGATTTGgtaagagttacattttctacaaacatgtaaccttttgatggatttgctgcc
cttggaacattctatttgcattgttcagtttcatttgcaatctggttgagacatgctgtaacttggggccttacaaaatccaaacgtagGTACTTTATGTGCCACCACCTGATTTGGAAGGAAGAATTGAAGTACTACGTGTACATACTCGTAATATGAAGCTGGAAAAAAATGTTGATCTGTCACAAATTGCTAAACAG
ACGCAGTTTTTCACTGGAGCAGAGCTAGCAGGTCTATGCAGGGAAGCGGCTATAGTAGCTCTCAGGGAAGACATCTGTGCCGATACTGTTTGTAGTCGGCATTTTGAACTTGCAAGAAACTCTTTGCGACCATCATTGTCAGAAGTTCAGATTGCTAGCTATTCTTCTTTTATGAAGCATAGAAGAAAAACTCTTCTAAA
CACATTAACTTGAATGACATACTGTTAACACAAGCTTGGCAGTGATTATTGGTGTTGGAAGTATTTGGTTAGAAAGCCCAAAAATACTGGGAAGAAGCAAGAAGTAATTACTTGAAAACATTACATACTTGGCATCAGTGACTTTAGAATTCTGGTGGTCTGGATGATCGTGATGCAGACGCGATCCTTTGTGATGCTTA
GCTGTATTCAAAATCTGATGTCTTAGCAGTGCAGAGTTGAAGAAGATTGACATATTGTTGTACCCTTCAAGTTTTTCATCTGCATATTTATACTAGGAAAAATTCCTTTTGCTGTTTAGTTGCAAATAGTTATATAAAATTACGTGGTTTAGCT
Intron 3 GTATACGTGA ... TTGCATACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 29.67 | 11.9 | 5 | 5.1 |
| A2 | 44.44 | 5 | 4 | 1 |
| A3 | 63.78 | 8.6 | 15 | 3.9 |
| A4 | 32.09 | 8.6 | 4 | 1 |
| A5 | 100 | 0 | 1 | 1 |
| A6 | 34.06 | 38.9 | 20 | 7.4 |
| A7 | 34.71 | 30.1 | 16 | 5.6 |
| A8 | 29.03 | 44 | 18 | 13 |
| A9 | 40.64 | 38.3 | 26 | 10.7 |
| A10 | 27.2 | 36.6 | 13.6 | 9.9 |
>TRINITY_DN115782_c7_g2_i3 from sample A1 / Example spliced isoformCTCTGGGTAGATAGTACGAGGGACGTTGGTGTTGTAATTTGTTCAGTGTGTTTTTCATGGCAGTGACAGAAGAAGCAGAAGGGGATGGTTGGAAGGCAGAAGAAGCCATTGCAGGCAATAAAAAAGCACTGCAAGGGCTGAGGGAGCTTTTGTTATGGCCGCTTATTTATTCAAGAGAAGCAAACATTCTGGGGTTAAGG
TGGCCCAAAGGTTTACTGTTATATGGGCCTCCAGGCACTGGCAAGACAAGCTTGATCTATGCGATTGTTCGAGAATGTGGTGCCCATCTCACTCTGATAAGGTCTAGTTCATAGGGCATATGCTGGAGAAAGTGAACGGATTTTGCGGGAGGCTTTTGCCGAAGCATCATCGCAAACTGCAGCAGGTAGACCAGCCATCA
TTTTCATCGATGAAATTGATGCACTTTGTCCACGTCGTGACTCCAGACGGGAGCAAGAATCTCGTATAGTTGCCCAACTTCTTACGCTTATGGATGGCACCAAAAGTTCATTGGGATCTCTGGAGAGAGTGGTTGTGGTAGCATCAACAAACAGAGTTAATGCAATTGATCCAGCATTGCGAAGACCAGGGCGTTTTGAT
GCTGAAATTGAAGTTAGTGCACCTAATGAGGAAGAGCGTTTGGAGATTCTTCAGCTCCATGCAAGAAATCTTCCACTTGATCGAAGTGTCAATCTTCACGCTGTAGCTGCATCTTGTAATGGATATGTTGGTGCTGATTTAGCAGCTTTATGTCGTGAGGCTGCAATGTCAACAATTCGAAAATCTTCTGGTTTTCAGGA
AGAAGAGTTGCCTAGTATAATGATGGAAGACTGGGAGGTTGCACGTTCAAAGGTTGGCCCCAGCATAGTCAGAGGTGTCATTGCTGAAGTGCCAAAAGTCTCCTGGGAAGACATTGGAGGCCTGCATGATGTTAAGAAGAAGCTTCAGCAGGCTGTGGAATGGCCTATAAAACATGCTGCTGCATTTGCAAGACTGGGGA
TTTCCCCTGCTCGTGGAGTTCTCTTACATGGTCCACCAGGTTGCTCTAAAACTACTCTTGTTAATGCTGCAGCTCATGCTTCCCAAGCAAACCTGTTCTCATTAAGTGGGGCAGAGCTTTACTCAATGTATGTTGGAGAAGGTGAAGCTTTACTACGTGAGACATTTCAAAGAGCACGCTTAGCGGCTCCCAGTATAATA
TTTTTTGATGAAGCTGATGCTATTGCAGCAAAGCGGGATGGAAGAGAAGAGGAAAATTCCAGTGGTAATGGTGCAGTTGGAGAAAGGCTGTTGTCTACCTTACTAACTGAGATTGATGGGCTTGAGATCACAAAAGGAGTTCTAGTGTTGGGAGCTACAAATCGTCCTGAAGCAATTGATGCTGCACTTATGCGTCCTGG
TCGCTTTGATTTGGTACTTTATGTGCCACCACCTGATTTGGAAGGAAGAATTGAAGTACTACGTGTACATACTCATAATATGAAGCTGGAAAAAAATGTTGATCTGTCACAAATTGCTAAACAGACGCAGTTTTTCACTGGAGCAGAGCTAGCAGGTCTATGCAGGGAAGCGGCTATAGTAGCTCTCAGGGAAGACATCT
GTGCCGATACTGTTTGTAGTCGGCATTTTGAACTTGCAAGAAACTCTTTGCGACCATCATTGTCAGAAGTTCAGATTGCTAGCTATTCTTCTTTTATGAAGCATAGAAGAAAAACTCTTCTAAACACATTAACTTGAATGACATACTGTTAACACAAGCTTGGCAGTGATTATTGGTGTTGGAAGTATTTGGTTAGAAAG
CCCAAAAATACTGGGAAGAAGCAAGAAGTAATTACTTGAAAACATTACATACTTGGCATCAGTGACTTTAGAATTCTGGTGGTCTGGATGATCGTGATGCAGACGCGATCCTTTGTGATGCTTAGCTGTATTCAAAATCTGATGTCTTAGCAGTGC
>TRINITY_DN115782_c7_g2_i2 from sample A1 / Example unspliced isoform:CTCTGGGTAGATAGTACGAGGGACGTTGGTGTTGTAATTTGTTCAGTGTGTTTTTCATGGCAGTGACAGAAGAAGCAGAAGGGGATGGTTGGAAGGCAGAAGAAGCCATTGCAGGCAATAAAAAAGCACTGCAAGGGCTGAGGGAGCTTTTGTTATGGCCGCTTATTTATTCAAGAGAAGCAAACATTCTGGGGTTAAGG
TGGCCCAAAGGTTTACTGTTATATGGGCCTCCAGGCACTGGCAAGACAAGCTTGATCTATGCGATTGTTCGAGAATGTGGTGCCCATCTCACTCTGATAAGTGCAGGTCTAGTTCATAGGGCATATGCTGGAGAAAGTGAACGGATTTTGCGGGAGGCTTTTGCCGAAGCATCATCGCAAACTGCAGCAGGTAGACCAGC
CATCATTTTCATCGATGAAATTGATGCACTTTGTCCACGTCGTGACTCCAGACGGGAGCAAGAATCTCGTATAGTTGCCCAACTTCTTACGCTTATGGATGGCACCAAAAGTTCATTGGGATCTCTGGAGAGAGTGGTTGTGGTAGCATCAACAAACAGAGTTAATGCAATTGATCCAGCATTGCGAAGACCAGGGCGTT
TTGATGCTGAAATTGAAGTTAGTGCACCTAATGAGGAAGAGCGTTTGGAGATTCTTCAGCTCCATGCAAGAAATCTTCCACTTGATCGAAGTGTCAATCTTCACGCTGTAGCTGCATCTTGTAATGGATATGTTGGTGCTGATTTAGCAGCTTTATGTCGTGAGGCTGCAATGTCAACAATTCGAAAATCTTCTGGTTTT
CAGGAAGAAGAGTTGCCTAGTATAATGATGGAAGACTGGGAGGTTGCACGTTCAAAGGTTGGCCCCAGCATAGTCAGAGGTGTCATTGCTGAAGTGCCAAAAGTCTCCTGGGAAGACATTGGAGGCCTGCATGATGTTAAGAAGAAGCTTCAGCAGGCTGTGGAATGGCCTATAAAACATGCTGCTGCATTTGCAAGACT
GGGGATTTCCCCTGCTCGTGGAGTTCTCTTACATGGTCCACCAGGTTGCTCTAAAACTACTCTTGTTAATGCTGCAGCTCATGCTTCCCAAGCAAACCTGTTCTCATTAAGTGGGGCAGAGCTTTACTCAATGTATGTTGGAGAAGGTGAAGCTTTACTACGTGAGACATTTCAAAGAGCACGCTTAGCGGCTCCCAGTA
TAATATTTTTTGATGAAGCTGATGCTATTGCAGCAAAGCGGGATGGAAGAGAAGAGGAAAATTCCAGTGGTAATGGTGCAGTTGGAGAAAGGCTGTTGTCTACCTTACTAACTGAGATTGATGGGCTTGAGATCACAAAAgtatacgtgacacatgcaaccttctatcttcatgtctatatttgcaagaagagaaggaag
gattttcttacacagcatattttatcaggaccttttttagtctctgatatgtcatgcttgtatttccacttattacacctcatatgcctttttttatggtcttttattgttctctcatattcaaagatagatagcagttctggtcaagtatttaatttttactgctagaagtattttatgattttggtattttggtaatt
aatttatctcaatttcttaggatagtaagaaaacagttatgtagtgtgtgcactttttggtttgcatacagGGAGTTCTAGTGTTGGGAGCTACAAATCGTCCTGAAGCAATTGATGCTGCACTTATGCGTCCTGGTCGCTTTGATTTGGTACTTTATGTGCCACCACCTGATTTGGAAGGAAGAATTGAAGTACTACGT
GTACATACTCATAATATGAAGCTGGAAAAAAATGTTGATCTGTCACAAATTGCTAAACAGACGCAGTTTTTCACTGGAGCAGAGCTAGCAGGTCTATGCAGGGAAGCGGCTATAGTAGCTCTCAGGGAAGACATCTGTGCCGATACTGTTTGTAGTCGGCATTTTGAACTTGCAAGAAACTCTTTGCGACCATCATTGTC
AGAAGTTCAGATTGCTAGCTATTCTTCTTTTATGAAGCATAGAAGAAAAACTCTTCTAAACACATTAACTTGAATGACATACTGTTAACACAAGCTTGGCAGTGATTATTGGTGTTGGAAGTATTTGGTTAGAAAGCCCAAAAATACTGGGAAGAAGCAAGAAGTAATTACTTGAAAACATTACATACTTGGCATCAGTG
ACTTTAGAATTCTGGTGGTCTGGATGATCGTGATGCAGACGCGATCCTTTGTGATGCTTAGCTGTATTCAAAATCTGATGTCTTAGCAGTGC
Intron 4 GTATTTCCAC ... TTGCATACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 35.71 | 9 | 4 | 6 |
| A2 | 60 | 1 | 2 | 1 |
| A3 | 42.86 | 6 | 5 | 4 |
| A4 | 50 | 1 | 1 | 1 |
| A5 | 100 | 0 | 0 | 1 |
| A6 | 38.46 | 12 | 7 | 8 |
| A7 | 46.15 | 7 | 6 | 6 |
| A8 | 44.12 | 19 | 15 | 15 |
| A9 | 43.86 | 16 | 13 | 12 |
| A10 | 71.43 | 2 | 0 | 10 |
>TRINITY_DN37979_c0_g1_i3 from sample A6 / Example spliced isoformCGGCAGCATTTTGACATTCTCAGCTGTTTCGATCTCTGGGTAGATAGTACGAGGGACGTTGGTGTTGTAATTTGTTCAGTGTGTTTTTCATGGCAGTGACAGAAGAAGCAGAAGGGGATGGTTGGAAGGCAGAAGAAGCCATTGCAGGCAATAAAAAAGCACTGCAAGGGCTGAGGGAGCTTTTGTTATGGCCGCTTATT
TATTCAAGAGAAGCAAACATTCTGGGGTTAAGGTGGCCCAAAGGTTTACTGTTATATGGGCCTCCAGGCACTGGCAAGACAAGCTTGATCTATGCGATTGTTCGAGAATGTGGTGCCCATCTCACTCTGATAAGTGCAGGTCTAGTTCATAGGGCATATGCTGGAGAAAGTGAACGGATTTTGCGGGAGGCTTTTGCCGA
AGCATCATCGCAAACTGCAGCAGGTAGACCAGCCATCATTTTCATCGATGAAATTGATGCACTTTGTCCACGTCGTGACTCCAGACGGGAGCAAGAATCTCGTATAGTTGCCCAACTTCTTACGCTTATGGATGGCACCAAAAGTTCATTGGGATCTCTGGAGAGAGTGGTTGTGGTAGCATCAACAAACAGAGTTAATG
CAATTGATCCAGCATTGCGAAGACCAGGGCGTTTTGATGCTGAAATTGAAGTTAGTGCACCTAATGAGGAAGAGCGTTTGGAGATTCTTCAGCTCCATGCAAGAAATCTTCCACTTGATCGAAGTGTCAATCTTCACGCTGTAGCTGCATCTTGTAATGGATATGTTGGTGCTGATTTAGCAGCTTTATGTCGTGAGGCT
GCAATGTCAACAATTCGAAAATCTTCTGGTTTTCAGGAAGAAGAGTTGCCTAGTATAATGATGGAAGACTGGGAGGTTGCACGTTCAAAGGTTGGCCCCAGCATAGTCAGAGGTGTCATTGCTGAAGTGCCAAAAGTCTCCTGGGAAGACATTGGAGGCCTGCATGATGTTAAGAAGAAGCTTCAGCAGGCTGTGGAATG
GCCTATAAAACATGCTGCTGCATTTGCAAGACTGGGGATTTCCCCTGCTCGTGGAGTTCTCTTACATGGTCCACCAGGTTGCTCTAAAACTACTCTTGTTAATGCTGCAGCTCATGCTTCCCAAGCAAACCTGTTCTCATTAAGTGGGGCAGAGCTTTACTCAATGTATGTTGGAGAAGGTGAAGCTTTACTACGTGAGA
CATTTCAAAGAGCACGCTTAGCGGCTCCCAGTATAATATTTTTTGATGAAGCTGATGCTATTGCAGCAAAGCGGGATGGAAGAGAAGAGGAAATTTCCAGTGGTAATGGTGCAGTTGGAGAAAGGCTGTTGTCTACCTTACTAACTGAGATTGATGGGCTTGAGATCACAAAAGTATACGTGACACATGCAACCTTCTAT
CTTCATGTCTATATTTGCAAGAAGAGAAGGAAGGATTTTCTTACACAGCATATTTTATCAGGACCTTTTTTAGTCTCTGATATGTCATGCTTGGAGTTCTAGTGTTGGGAGCTACAAATCGTCCTGAAGCAATTGATGCTGCACTTATGCGTCCTGGTCGCTTTGATTTGGTACTTTATGTGCCACCACCTGATTTGGAA
GGAAGAATTGAAGTACTACGTGTACATACTCGTAATATGAAGCTGGAAAAAAATGTTGATCTGTCACAAATTGCTAAACAGACGCAGTTTTTCACTGGAGCAGAGCTAGCAGGTCTATGCAGGGAAGCGGCTATAGTAGCTCTCAGGGAAGACATCTGTGCCGATACTGTTTGTAGTCGGCATTTTGAACTTGCAAGAAA
CTCTTTGCGACCATCATTGTCAGAAGTTCAGATTGCTAGCTATTCTTCTTTTATGAAGCATAGAAGAAAAACTCTTCTAAACACATTAACTTGAATGACATACTGTTAACACAAGCTTGGCAGTGATTATTGGTGTTGGAAGTATTTGGTTAGAAAGCCCAAAAATACTGGGAAGAAGCAAGAAGTAATTACTTGAAAAC
ATTACATACTTGGCATCAGTGACTTTAGAATTCTGGTGGTCTGGATGATCGTGATGCAGACGCGATCCTTTGTGATGCTTAGCTGTATTCAAAATCTGATGTCTTAGCAGTGCAGAGTTGAAGAAGATTGACATATTGTTGTACCCTTCAAGTTTTTCATCTGCATATTTATACTAGGAAAATTTCCTTTTGCTGTTTAG
TTGCAAATAGTTATATAAAATTACGTGGTTTAGCTATTTGATGGCTGCAAAGGTACCAGATGTTAATCCTACGTTTACAATATTTATATTAGCTTCATTTTTTTGCTT
>TRINITY_DN37979_c0_g1_i1 from sample A6 / Example unspliced isoform:CGGCAGCATTTTGACATTCTCAGCTGTTTCGATCTCTGGGTAGATAGTACGAGGGACGTTGGTGTTGTAATTTGTTCAGTGTGTTTTTCATGGCAGTGACAGAAGAAGCAGAAGGGGATGGTTGGAAGGCAGAAGAAGCCATTGCAGGCAATAAAAAAGCACTGCAAGGGCTGAGGGAGCTTTTGTTATGGCCGCTTATT
TATTCAAGAGAAGCAAACATTCTGGGGTTAAGGTGGCCCAAAGGTTTACTGTTATATGGGCCTCCAGGCACTGGCAAGACAAGCTTGATCTATGCGATTGTTCGAGAATGTGGTGCCCATCTCACTCTGATAAGTGCAGGTCTAGTTCATAGGGCATATGCTGGAGAAAGTGAACGGATTTTGCGGGAGGCTTTTGCCGA
AGCATCATCGCAAACTGCAGCAGGTAGACCAGCCATCATTTTCATCGATGAAATTGATGCACTTTGTCCACGTCGTGACTCCAGACGGGAGCAAGAATCTCGTATAGTTGCCCAACTTCTTACGCTTATGGATGGCACCAAAAGTTCATTGGGATCTCTGGAGAGAGTGGTTGTGGTAGCATCAACAAACAGAGTTAATG
CAATTGATCCAGCATTGCGAAGACCAGGGCGTTTTGATGCTGAAATTGAAGTTAGTGCACCTAATGAGGAAGAGCGTTTGGAGATTCTTCAGCTCCATGCAAGAAATCTTCCACTTGATCGAAGTGTCAATCTTCACGCTGTAGCTGCATCTTGTAATGGATATGTTGGTGCTGATTTAGCAGCTTTATGTCGTGAGGCT
GCAATGTCAACAATTCGAAAATCTTCTGGTTTTCAGGAAGAAGAGTTGCCTAGTATAATGATGGAAGACTGGGAGGTTGCACGTTCAAAGGTTGGCCCCAGCATAGTCAGAGGTGTCATTGCTGAAGTGCCAAAAGTCTCCTGGGAAGACATTGGAGGCCTGCATGATGTTAAGAAGAAGCTTCAGCAGGCTGTGGAATG
GCCTATAAAACATGCTGCTGCATTTGCAAGACTGGGGATTTCCCCTGCTCGTGGAGTTCTCTTACATGGTCCACCAGGTTGCTCTAAAACTACTCTTGTTAATGCTGCAGCTCATGCTTCCCAAGCAAACCTGTTCTCATTAAGTGGGGCAGAGCTTTACTCAATGTATGTTGGAGAAGGTGAAGCTTTACTACGTGAGA
CATTTCAAAGAGCACGCTTAGCGGCTCCCAGTATAATATTTTTTGATGAAGCTGATGCTATTGCAGCAAAGCGGGATGGAAGAGAAGAGGAAATTTCCAGTGGTAATGGTGCAGTTGGAGAAAGGCTGTTGTCTACCTTACTAACTGAGATTGATGGGCTTGAGATCACAAAAGTATACGTGACACATGCAACCTTCTAT
CTTCATGTCTATATTTGCAAGAAGAGAAGGAAGGATTTTCTTACACAGCATATTTTATCAGGACCTTTTTTAGTCTCTGATATGTCATGCTTgtatttccacttattacacctcatatgcctttttttatggtcttttattgttctctcatattcaaagatagatagcagttctggtcaagtatttaatttttactgcta
gaagtattttatgattttggtattttggtaattaatttatctcaatttcttaggatagtaagaaaacagttatgtagtgtgtgcactttttggtttgcatacagGGAGTTCTAGTGTTGGGAGCTACAAATCGTCCTGAAGCAATTGATGCTGCACTTATGCGTCCTGGTCGCTTTGATTTGGTACTTTATGTGCCACCA
CCTGATTTGGAAGGAAGAATTGAAGTACTACGTGTACATACTCGTAATATGAAGCTGGAAAAAAATGTTGATCTGTCACAAATTGCTAAACAGACGCAGTTTTTCACTGGAGCAGAGCTAGCAGGTCTATGCAGGGAAGCGGCTATAGTAGCTCTCAGGGAAGACATCTGTGCCGATACTGTTTGTAGTCGGCATTTTGA
ACTTGCAAGAAACTCTTTGCGACCATCATTGTCAGAAGTTCAGATTGCTAGCTATTCTTCTTTTATGAAGCATAGAAGAAAAACTCTTCTAAACACATTAACTTGAATGACATACTGTTAACACAAGCTTGGCAGTGATTATTGGTGTTGGAAGTATTTGGTTAGAAAGCCCAAAAATACTGGGAAGAAGCAAGAAGTAA
TTACTTGAAAACATTACATACTTGGCATCAGTGACTTTAGAATTCTGGTGGTCTGGATGATCGTGATGCAGACGCGATCCTTTGTGATGCTTAGCTGTATTCAAAATCTGATGTCTTAGCAGTGCAGAGTTGAAGAAGATTGACATATTGTTGTACCCTTCAAGTTTTTCATCTGCATATTTATACTAGGAAAATTTCCT
TTTGCTGTTTAGTTGCAAATAGTTATATAAAATTACGTGGTTTAGCTATTTGATGGCTGCAAAGGTACCAGATGTTAATCCTACGTTTACAATATTTATATTAGCTTCATTTTTTTGCTT