sp|Q9LUS3|PP237_ARATH ----> Pentatricopeptide repeat-containing protein At3g16610

Intron 1 GTATGAACCC ... CATAAATCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	68.5	20	51	36
A2	66.67	17	31	37
A3	64.44	16	37	21
A4	73.13	9	19	30
A5	60.66	12	15	22
A6	60.37	172	222	302
A7	62.61	186	309	314
A8	56.85	249	260	396
A9	57.53	230	247	376
A10	68.77	119	247	277

>TRINITY_DN41175_c0_g1_i1 from sample A6 / Example spliced isoform

GATCAATGCTCTTTGTTAATAATGTTCATTGTTTTTTGGGGGACATCCATGATCGGAGGGTATTGCATGCATGGCAATGGCAAGGAAGACCTCAAACTCTTTGAACTGATGCAGCATTCTGGAAAAGCAAAATGCCACTATTGTTTGCTATAGGAGAAAAGGTGAGCAATAGCATATGGCTTGCAGACGTCTACAACAAA
ACAGTCATCTAGGTAATTCAGGAAGATTGAATTGTTATTAGATCTTGTTGTCCTATAATAAAGCACTATAGTTCTTGCTATATTTTACGTCTTCTTATCTACTTTGGTTCACTATGTTCTTTTATTTGAATTTTGGACATTGGAAGGATATATTCTCAAGTAAAAGAAGTTCCAGGGATATAGTTCTTGCTATATTTTAT
GTCTTCTTATCTACTTTGGTTCCCTATGTTCTTTTATTTGAATTTTGGACATTGGAAGGATATATTCTCAAGTAAAAGAAGTTCCAGGGATGAAAATTTCACTGACAATTAGCATATTATTCACAATGCCTTCACAAGTTTCTTATGGTTGTAATCAAACTTTAATGGCACTTATCCATCATTGGTTGAACCACATAAGA
GATGCCG

>TRINITY_DN41175_c0_g1_i2 from sample A6 / Example unspliced isoform:

GATCAATGCTCTTTGTTAATAATGTTCATTGTTTTTTGGGGGACATCCATGATCGGAGGGTATTGCATGCATGGCAATGGCAAGGAAGACCTCAAACTCTTTGAACTGATGCAGCATTCTGgtatgaacccagatcatgtcactttactttgtgtcttatcagtatgttgccattctggtctactggatgagggcagtca
atactttgattccatggtagaaattcgatttatgtgaatttctgcttgaattcacataaataggaaaaaacataatttgtgcatgcaacataaatcagGAAAAGCAAAATGCCACTATTGTTTGCTATAGGAGAAAAGGTGAGCAATAGCATATGGCTTGCAGACGTCTACAACAAAACAGTCATCTAGGTAATTCAGGA
AGATTGAATTGTTATTAGATCTTGTTGTCCTATAATAAAGCACTATAGTTCTTGCTATATTTTACGTCTTCTTATCTACTTTGGTTCACTATGTTCTTTTATTTGAATTTTGGACATTGGAAGGATATATTCTCAAGTAAAAGAAGTTCCAGGGATATAGTTCTTGCTATATTTTATGTCTTCTTATCTACTTTGGTTCC
CTATGTTCTTTTATTTGAATTTTGGACATTGGAAGGATATATTCTCAAGTAAAAGAAGTTCCAGGGATGAAAATTTCACTGACAATTAGCATATTATTCACAATGCCTTCACAAGTTTCTTATGGTTGTAATCAAACTTTAATGGCACTTATCCATCATTGGTTGAACCACATAAGAGATGCCG