NA ----> NA

Intron 1 GTTTGCTGGG ... TTGATTGCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	100	0	0	1
A2	100	0	8	4
A3	100	0	2	1
A4	-1	0	0	0
A5	-1	0	0	0
A6	97.3	1	47	25
A7	80	5	28	12
A8	83.33	4	16	24
A9	84.91	4	25	20
A10	89.47	1	10	7

>TRINITY_DN43292_c3_g4_i1 from sample A9 / Example spliced isoform

CCCCACATAAACCCCTCTCAATCACTTCCGATTTCTTCGTCGATGAGGTGCTCGATCCATGAAAGAAAGGCAATCAATTCGTGTTGCAGGGTTTTCGACGAGGAGATAATCTCTGAGTCCAGGTGTGCTTAGTGTGCAGAACGAGCAAAGTCGATGGATTACACTGATTCCAGTTGTTTTCTTATTTTAGAATAGAAATT
AATTTAGGTTATCGATTGTACTACTTTGATGTCGCC

>TRINITY_DN43292_c3_g4_i2 from sample A9 / Example unspliced isoform:

CCCCACATAAACCCCTCTCAATCACTTCCGATTTCTTCGTCGATGAGGTGCTCGATCCATGAAAGAAAGGCAATCAATTCGTGTTGCAGGGTTTTCGACGAGGAGATAATCTCTGAGTCCAGgtttgctgggatattgatgctcagggttcctcagagtttgttttcgtcgattttcctcttcatgtgttgagtagcatc
aacttcttccatttggtgcttgaccaatgtgttgcaatcctgtcaaagatcgtaattcttgtcaatgtgacaataaaatgcttattcttgattgcagGTGTGCTTAGTGTGCAGAACGAGCAAAGTCGATGGATTACACTGATTCCAGTTGTTTTCTTATTTTAGAATAGAAATTAATTTAGGTTATCGATTGTACTACT
TTGATGTCGCC

Intron 2 GTTGAGTAGC ... TTGATTGCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	28.89	1.3	0	1
A2	88.89	1	12	4
A3	50	2	3	1
A4	6.67	2	0	0.3
A5	-1	0	0	0
A6	49.49	43.7	59	26
A7	34.5	37.7	25	14.7
A8	55.65	21.7	29	24.7
A9	59.72	22.3	45	20.7
A10	47.1	17	21	9.3

>TRINITY_DN46153_c1_g3_i2 from sample A8 / Example spliced isoform

CCCACATAAACCCCTCTCAATCACTTCCGATTTCTTCGTCGATGAGGTGCTCGATCCATGAAAGAAAGGCAATCAATTCGTGTTGCAGGGTTTTCGACGAGGAGATAATCTCTGAGTCCAGGTTTGCTGGGATATTGATGCTCAGGGTTCCTCAGAGTTTGTTTTCGTCGATTTTCCTCTTCATGTGTGTGCTTAGTGTG
CAGAACGAGCAAAGTCGATGGATTACACTGATTCCAGTTGTTTTCTTATTTTAGAATAGAAATTAATTTAGGTTATCGATTGTACTACTTTGATGTCGCTTGT

>TRINITY_DN46153_c1_g3_i1 from sample A8 / Example unspliced isoform:

CCCACATAAACCCCTCTCAATCACTTCCGATTTCTTCGTCGATGAGGTGCTCGATCCATGAAAGAAAGGCAATCAATTCGTGTTGCAGGGTTTTCGACGAGGAGATAATCTCTGAGTCCAGGTTTGCTGGGATATTGATGCTCAGGGTTCCTCAGAGTTTGTTTTCGTCGATTTTCCTCTTCATGTgttgagtagcatca
acttcttccatttggtgcttgaccaatgtgttgcaatcctgtcaaagatcgtaattcttgtcaatgtgacaataaaatgcttattcttgattgcagGTGTGCTTAGTGTGCAGAACGAGCAAAGTCGATGGATTACACTGATTCCAGTTGTTTTCTTATTTTAGAATAGAAATTAATTTAGGTTATCGATTGTACTACTT
TGATGTCGCTTGT