NA ----> NA

Intron 1 GTGATTTGAC ... ATATTGGCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	43.96	417.7	314	345.3
A2	42.06	343	225.3	275
A3	44.03	318.7	240.3	264.3
A4	43.08	310	210.7	259
A5	49.7	182.3	180.7	176
A6	29.86	237.3	104.3	96
A7	29.93	454.3	173.7	208
A8	28.43	370.3	126.7	162
A9	34.33	321.3	128	207
A10	28.87	454.7	178.3	184

>TRINITY_DN124571_c1_g1_i2 from sample A2 / Example spliced isoform

CAGAGGAGTATGAAAGCTCATCCATTACAGAAATCATACAAGGGAGAAGTCATCCAGGGGGTTTGTGGTTAGGACAGGACAACACAGGACAGGACAACAGTGTCTCCTTAAGCTTATTATCTTGCAGGAGAAGATTACATTTGTTGTTTATCTGGAGCAGATCTGAAAGAGGGATTATAAGAGCCCATCCATTACAGAAT
TCATACAGGGGGTAAAGAATTATATTTGTCTGAGCCTTTGGGCTGTCCACAATCTGCAGCCATATCGGCCGTCCTCAATCTGCAGCAGACAAACATGCTTTTGAAGCGTTGTTTTGAAAGCAATATTCTGCGAGTGGAGTAATTTTCGATTCCAAAGGTCAAAG

>TRINITY_DN124571_c1_g1_i3 from sample A2 / Example unspliced isoform:

GTGGTTAGGTATCTGTTGCGGCAGTTTCATTTAGTGGCCCTACCTTCATCTGCTTGGACATTTTCTCAAGTTATTATCAGGCTGAAGGGATTTAGATTATGTTTTATAATTGTATTAGATTGACTTTAATCCCGATGACAGGACAGGACAACACAGGACAGGACAACAGTGTCTCCTTAAGCTTATTATCTTGCAGGAGA
AGATTACATTTGTTGTTTATCTGGAGCAGATCTGAAAGAGgtgatttgacaagtttgcaagcacccccataccaaagtggctattatcctaggaagtattaattgaatcatggagtctcatcaatatcggtttatgtttttttattttatttaggtggttaaacttgtcctatattggcagGGATTATAAGAGCCCATCC
ATTACAGAATTCATACAGGGGGTAAAGAATTATATTTGTCTGAGCCTTTGGGCTGTCCACAATCTGCAGCCATATCGGCCGTCCTCAATCTGCAGCAGACAAACATGCTTTTGAAGCGTTGTTTTGAAAGCAATATTCTGCGAGTGGAGTAATTTTCGATTCCAAAGGTCAAAG

Intron 2 GTATGTTCTA ... TTATCTGCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	57.95	222	275	337
A2	62.16	165	258	284
A3	62.96	140	256	220
A4	60.49	161	238	255
A5	59.2	92	150	117
A6	65.36	124	231	237
A7	61.33	221	352	349
A8	60.95	172	245	292
A9	58.89	177	241	266
A10	55.05	198	250	235

>TRINITY_DN112870_c2_g2_i5 from sample A5 / Example spliced isoform

ATAGTGGAAGCCTTACCTTCATCTGGTTTGCATTTTCTCAAGTTGTTATCAGGCGGAAGGGATTTGGATTATGCTTTTATAATTATATGAGGTTGTCTTTTTAATCCCGATAATAGGATAGTACCGCGGCTCCTTAAGCTTCTTGTCTTGCAGGAGAAGATTACATTTGTTGTTTATCTGGAGCAGATCTGAAAGAGGGA
TTATAAGAGCCCATCCATTACAGAATTCATACAGGGGGTAAAGAATTATATTTGTCTGAGCCTTTGGGCTGTCCACAATCTGCAGCCATATCGGCCGTCCTCAATCTGCAGCAGACAAACATGCTTTTGAAGCGTTGTTTTGAAAGCAATATTCTGCGAGTGGAGTAATTTTCGATTCCAAAGGTCAAAGATACCACCCT
TTTGTTCTTGTACACAGTTGTATGAATCAATCCTGTAAGCTTAGGAACAAGAGGACGGACAAGGGTGGACTATATATAAGTTGAATATATATGAAGTTGAGCATTGCCAATTAGCTATATGGAACCTAATGTTGAGAGGAAACGGAATTTAGGGTGTATGTAATATAGTCAACAGGGAGAGAATCGGAATTTAGGGTTGT
AAGTGAATCTGATCAAATTTCTGTAAGTAATATGTAATTTTAGGTTTCGAGGCAGCAACGCAAATATAATCTCTCTTTTCAATATCTTCAGTATGTGAAAAAGCGTATGCTGTGGAGAAGTAGTATCAATTTGAAGCGGCAAAGC

>TRINITY_DN112870_c2_g2_i7 from sample A5 / Example unspliced isoform:

ATAGTGGAAGCCTTACCTTCATCTGGTTTGCATTTTCTCAAGTTGTTATCAGGCGGAAGGGATTTGGATTATGCTTTTATAATTATATGAGGTTGTCTTTTTAATCCCGATAATAGGATAGTACCGCGGCTCCTTAAGCTTCTTGTCTTGCAGGAGAAGATTACATTTGTTGTTTATCTGGAGCAGATCTGAAAGAGGTG
ATTTGACAAGTTTGCAAGCACCCCCATACCAAAGTGGCTATTATCCTAGGAAGTATTAATTGAATCATGGAGTCTCATCAATATCGGTTTATGTTTTTTTATTTTATTTAGGTGGTTAAACTTGTCCTATATTGGCAGGGATTATAAGAGCCCATCCATTACAGAATTCATACAGGGGGTAAAGAATTATATTTGTCTGA
GCCTTTGGGCTGTCCACAATCTGCAGCCATATCGGCCGTCCTCAATCTGCAGCAGACAAACATGCTTTTGAAGCGTTGTTTTGAAAGCAATATTCTGCGAGTGGAGTAATTTTCGATTCCAAAGGTCAAAGATACCACCCTTTTGTTCTTGTACACAGTTGTATGAATCAATCCTGTAAGCTTAGGAACAAGAGGACGGA
CAAGGGTGGACTATATgtatgttctaatcttgtagtatttttctaggaagctagtgctttgtattaaatgtctctcccaggcttgagtaattggttacaacagctattggaaacatagtctttggaattaggggatgacatctattctttatctgcagATAAGTTGAATATATATGAAGTTGAGCATTGCCAATTAGCTA
TATGGAACCTAATGTTGAGAGGAAACGGAATTTAGGGTGTATGTAATATAGTCAACAGGGAGAGAATCGGAATTTAGGGTTGTAAGTGAATCTGATCAAATTTCTGTAAGTAATATGTAATTTTAGGTTTCGAGGCAGCAACGCAAATATAATCTCTCTTTTCAATATCTTCAGTATGTGAAAAAGCGTATGCTGTGGAG
AAGTAGTATCAATTTGAAGCGGCAAAGC