sp|O64584|WAP_ARATH ----> WPP domain-associated protein


Intron 1 GTAGATATAG ... TATAGCGCAG

SampleRetention score (%)Exon junction reads5'ss reads3'ss reads
A113.94711013
A220.7861824
A310.646378
A414.2948412
A525.3328613
A60100
A721.3535910
A89.09501
A92028212
A1014.024669



>TRINITY_DN44623_c2_g1_i6 from sample A9 / Example spliced isoform
TTTTGTGGAAGACTATTTTGTCCGGCTTGCATGGACTGACAATTGTAACTTGGATTGACCATACTTTAATTAAACGCGTCCGCCTCGCGGGGCCATAGTTTAGCGCGCAATTTAGTGATCCGGACGAACTTGGCGGCGCCGTCGAATAATCTAGCGTTTCCCCCTTCTTTGGGTACGAATTAACGATGAACAAAGAGGCA
ACGCAAAATAAAAGTACGAAACCCAGTCCCACAGGTCCCACATCTACAGAGATTCCGAGATCGAAACCCTTGCCCCTTGCCGCTTGAGTTTCCTCGGACAATCCGGCCACAACAAGTCGTGCAGATACAAACAAAAATCGCAAAAATTAACTCCGGGTTAATTGATGCTCGGGGGGTGCCGGGAATCGGGCGTTCCGTTA
TGTAACGGTGGCTAAACATTTCCGGTCATAGTAACCTTAAGGTGAGCAAACTGATTTTCGGGCAATAAAGATTTGCGGCAGCTGCACGCAGGCTAATGAGAGGTAGCTTGATTTTTCATTTTATTCAAGGGAGCTCAACTTAACAGGGTTATTATACTGGGAGTGCTTGATGGGAATGAATAGTTGGGAAGAATGCCCAT
GCATTTGTATTTTGAATAATTCCAGTTTGGAGAGCTTAGAACTTCAAGTCTTCTTTTGAAACAATTATTGGTAGCAAGCAACTTTCCATAATAAAATACTCACGCAGGGCAAATCTGAATAGTGACTGAAATCTGTTGCATAGTCCATTAATGTAATGGAAGCTTTGAATTTCAGATTTGTCATGTTTGGATGAGATCAC
AGGACAAGGTCATCGACATATAAAAATACTGTGAAATACATTGAATGGGAGGAGAGCAGGATTGTCTTTCAGGTAAAAAAAGACATGAAAGACAGAGACATCAGTTGCTTTAAACAAAAGCTTAAATTTAACCTTACTCGAGGATTTAAATAGAATATAAATGGGAAATGAGTCAATTTGTTTCTCAATTAGCAACAAGG
TTTTGCAAGAACAGCTTGTATTGAAAGAAGGAAATGAACAGATTGAGGAATTAGAAAGAATTCATTTAGAAAAAGATGAACAAATTGCTTTGTTGGAGAGATCAATCTTCGAGAAGAACTCAGCAATGTCAGCTCTTCAGAGGCAGAATGATGAATTGCTGCAGAAGGTACATGCTTTTAGTGAGAGTACAAAGAGGGGA
GAAACCAAACAACAGGTAAGGCTTAAAGATCTGGTGGGAAGATCAGATACACAGAATTCTCTAGATTTGTCCTTGCCTTGGTCCAAATGTAATGGGAAAAGGTCAATATCAGAAAATCAGATTTCAAGTTCTCATCAAGAGCTAGAACTGTTGAAATTTGGGATGCCAGCTAAAGCTTTCAGTAAGAATTCCAATGCCAT
TTGTTTGCCATCTTTTCTCGCAGAAGGGAAGAAAGAAGACATAATCAGTGTTCAGAGAAACATTTGTGCAATGCAGGAGGAAAATTCTATGATTAATGGGACAGCAAAGATTGTTGAAGGCCATGTTACTAGAGAATCGTCTCTGTTAGACAATTTCTCTGTTGATACTGCAGATATTATTCTAGAGTCACCATTGAAAA
GCATGTCAAAGGAGCAACTAATATCCCATTATATGAGGGTGGTGGCTGCTCTGAGAAGGGATAAAGAGATACTCCTGTCTGAAAAAACAGAAGAGATTTACAGGCTTAAGAGGCAATGCTTGAGAGAAAGAGGAAATGGCAGAGAGATAGCTGCACTCAAAAGAAGGCTTGGTGATAGGACTAAAGAATTGGATGAAGTT
ATTAAGGGGAATGAACAATTGGTTGTGTCAAGAAGATTTTCAGATGAGGAGTCTGAGATTACTTCTGAGATGGAGGATGAATTGCAAGATGAGAAGAGAAGTATGCTGGAGCTCATTACAGGGGAAGAAAGGGAATCCAAAGAGCTATCTGATAGTATAGGATTAGAACAGTCATTGAGGGAAGGTTATTTGTTGGAGCA
GATAGAAGAGTTGGAAAATGATAAGGAATATATCAAAGTAACAAACAAGAATGAAATAGACATACTGAGAATTTGTTTGGAAGAGACTATCAAAGACCAAACTATCTCCTTAAATTTGGCAATTAAGAAATCTGCAGAGCTGAGGGAGCAGAAGCATATGCTTGAAGATATTATTCAGGAGAAAGATAGGAGTTTAGCTC
TGAAGGAAAAAGAGGATCAAAATCAGCAAATCATTTTGAGGGCGAAACTGCTAGAAGAGAAGGAAAATGAATATAAAAAACAGCAAGATTTGTTGCAGCAATCCCTTAAAGAATGCCAAGAGTTGAAGAAACATAATAGTTTGCTTGAAACTCTAACACTGCAAAAAGAGAGAGCCTTAAATTTAGTGACGAAGGAACAG
GAGGAGCTGAAGAAACAAGTTGTTTTTCTGGAGGGAGCTGTCCAAGAAAATAATTTTTTTACAAGTGCAACCTCAAGGGATTTGGAGGAAGCAAGGAATGAGAAAATGATGCTTGAGGAAACTATTAGAGACAGGGAAAGAACCTTGGATCGAGTTATTATGAAAGAGGAAGAAAAGAGAATGGAACTTGAGAGAATCAT
TGCAGAGAAAGATAATGCCTTGACCTTCAATCAAAAAGAGATTGAAAAACAGACAAAAGGAACAATTCTGCTCAAGGAATGCCTTGAACAGAAGGAAGCATCTCTTGAGTGGGCATTGATGCAGATAAAGGAAGAAGAGAAACATAAAGAGTTCTTTGAGGCAAAGGTACAAAAGCTTGAGGATTGCATCATAGACTTAG
AAATGAATCAAAAGCAGAGTAAAATGCAATTAGAAAGGTATTTTAGGAATGTCATGGATGCATCTCTGAAGTTTGAAGAAACGGCATTGGAAAAACTCCATCACAACTTCCTAAGGTTGAAAGAAGCTGAGCGGAAACTGGTTATGCTTTGTGGGGTAGTCAATTCGTTTGCATTAAGGGAGTCACACTACAGGAAAATA
ATTGACAGAAGATATTGCAATCTCCAGAAAGCTGAGGAAGAGGTGGATTTGTTGGGAGATGAGGTTGACAGCGTTTTAAGTTTGCTGGGGAAAGTGTATGTTGTGCTTAACCACTATGCACCAATATTGCAACATTATCCAGGGATCCCTGATGTTGTGAATTTGATCAAGAAAGAGATAGCAGGCCGTTTTGATACAGA
GCTTAAGCTTTGTGGCACCTTGTGAACTTCGGATATTTTCGGCTCTATTCATCATTCTCAGTTCCTCTGTCTCATCCAACACTTAAGTATGATTTAGTCCGAGCTGAACCAGGTGGCTTTAAGAATAAAGTGTCAGATTTTGGATGTCGTACTGAGTCATTTTTGATATGGTAGGCATTGCTGCCTTACAGTTGTCATAA
AGATTGAGATAAGTGCTAGTTTGGAGGGATTAGGATTAGTTATAGTTGAAGTCAATGATATCAACCAAAGTTCAGCTTGCTCATATGCCCCAGCTGAAACAT


>TRINITY_DN44623_c2_g1_i3 from sample A9 / Example unspliced isoform:
TTTTGTGGAAGACTATTTTGTCCGGCTTGCATGGACTGACAATTGTAACTTGGATTGACCATACTTTAATTAAACGCGTCCGCCTCGCGGGGCCATAGTTTAGCGCGCAATTTAGTGATCCGGACGAACTTGGCGGCGCCGTCGAATAATCTAGCGTTTCCCCCTTCTTTGGGTACGAATTAACGATGAACAAAGAGGCA
ACGCAAAATAAAAGTACGAAACCCAGTCCCACAGGTCCCACATCTACAGAGATTCCGAGATCGAAACCCTTGCCCCTTGCCGCTTGAGTTTCCTCGGACAATCCGGCCACAACAAGTCGTGTAGATACATACAAAAATCGCAAAAATTAACTCCGGGTTAATTGATGCTCGGGGTGCCAGGAATCAGGTGTTCCGTTATG
TAACGGTGGCTAAACATTTCCGgtagatatagttttgttgttacatattgtaaaatatgcagttcagtttcagtgaaagtataatcgtgaatttataagggaaatcatctttcgcatacctatttccttttaaatacaattatttctgtatagcgcagGTCATAGTAACCTTAAGGTGAGCAAACTGATTTTCGGGCAAT
AAAGATTTGCGGCAGCTGCACGCAGGCTAATGAGAGGTAGCTTGATTTTTCATTTTATTCAAGGGAGCTCAACTTAACAGGGTTATTATACTGGGAGTGCTTGATGGGAATGAATAGTTGGGAAGAATGCCCATGCATTTGTATTTTGAATAATTCCAGTTTGGAGAGCTTAGAACTTCAAGTCTTCTTTTGAAACAATT
ATTGGTAGCAAGCAACTTTCCATAATAAAATACTCACGCAGGGCAAATCTGAATAGTGACTGAAATCTGTTGCATAGTCCATTAATGTAATGGAAGCTTTGAATTTCAGATTTGTCATGTTTGGATGAGATCACAGGACAAGGTCATCGACATATAAAAATACTGTGAAATACATTGAATGGGAGGAGAGCAGGATTGTC
TTTCAGGTAAAAAAAGACATGAAAGACAGAGACATCAGTTGCTTTAAACAAAAGCTTAAATTTAACCTTACTCGAGGATTTAAATAGAATATAAATGGGAAATGAGTCAATTTGTTTCTCAATTAGCAACAAGGTTTTGCAAGAACAGCTTGTATTGAAAGAAGGAAATGAACAGATTGAGGAATTAGAAAGAATTCATT
TAGAAAAAGATGAACAAATTGCTTTGTTGGAGAGATCAATCTTCGAGAAGAACTCAGCAATGTCAGCTCTTCAGAGGCAGAATGATGAATTGCTGCAGAAGGTACATGCTTTTAGTGAGAGTACAAAGAGGGGAGAAACCAAACAACAGGTAAGGCTTAAAGATCTGGTGGGAAGATCAGATACACAGAATTCTCTAGAT
TTGTCCTTGCCTTGGTCCAAATGTAATGGGAAAAGGTCAATATCAGAAAATCAGATTTCAAGTTCTCATCAAGAGCTAGAACTGTTGAAATTTGGGATGCCAGCTAAAGCTTTCAGTAAGAATTCCAATGCCATTTGTTTGCCATCTTTTCTCGCAGAAGGGAAGAAAGAAGACATAATCAGTGTTCAGAGAAACATTTG
TGCAATGCAGGAGGAAAATTCTATGATTAATGGGACAGCAAAGATTGTTGAAGGCCATGTTACTAGAGAATCGTCTCTGTTAGACAATTTCTCTGTTGATACTGCAGATATTATTCTAGAGTCACCATTGAAAAGCATGTCAAAGGAGCAACTAATATCCCATTATATGAGGGTGGTGGCTGCTCTGAGAAGGGATAAAG
AGATACTCCTGTCTGAAAAAACAGAAGAGATTTACAGGCTTAAGAGGCAATGCTTGAGAGAAAGAGGAAATGGCAGAGAGATAGCTGCACTCAAAAGAAGGCTTGGTGATAGGACTAAAGAATTGGATGAAGTTATTAAGGGGAATGAACAATTGGTTGTGTCAAGAAGATTTTCAGATGAGGAGTCTGAGATTACTTCT
GAGATGGAGGATGAATTGCAAGATGAGAAGAGAAGTATGCTGGAGCTCATTACAGGGGAAGAAAGGGAATCCAAAGAGCTATCTGATAGTATAGGATTAGAACAGTCATTGAGGGAAGGTTATTTGTTGGAGCAGATAGAAGAGTTGGAAAATGATAAGGAATATATCAAAGTAACAAACAAGAATGAAATAGACATACT
GAGAATTTGTTTGGAAGAGACTATCAAAGACCAAACTATCTCCTTAAATTTGGCAATTAAGAAATCTGCAGAGCTGAGGGAGCAGAAGCATATGCTTGAAGATATTATTCAGGAGAAAGATAGGAGTTTAGCTCTGAAGGAAAAAGAGGATCAAAATCAGCAAATCATTTTGAGGGCGAAACTGCTAGAAGAGAAGGAAA
ATGAATATAAAAAACAGCAAGATTTGTTGCAGCAATCCCTTAAAGAATGCCAAGAGTTGAAGAAACATAATAGTTTGCTTGAAACTCTAACACTGCAAAAAGAGAGAGCCTTAAATTTAGTGACGAAGGAACAGGAGGAGCTGAAGAAACAAGTTGTTTTTCTGGAGGGAGCTGTCCAAGAAAATAATTTTTTTACAAGT
GCAACCTCAAGGGATTTGGAGGAAGCAAGGAATGAGAAAATGATGCTTGAGGAAACTATTAGAGACAGGGAAAGAACCTTGGATCGAGTTATTATGAAAGAGGAAGAAAAGAGAATGGAACTTGAGAGAATCATTGCAGAGAAAGATAATGCCTTGACCTTCAATCAAAAAGAGATTGAAAAACAGACAAAAGGAACAAT
TCTGCTCAAGGAATGCCTTGAACAGAAGGAAGCATCTCTTGAGTGGGCATTGATGCAGATAAAGGAAGAAGAGAAACATAAAGAGTTCTTTGAGGCAAAGGTACAAAAGCTTGAGGATTGCATCATAGACTTAGAAATGAATCAAAAGCAGAGTAAAATGCAATTAGAAAGGTATTTTAGGAATGTCATGGATGCATCTC
TGAAGTTTGAAGAAACGGCATTGGAAAAACTCCATCACAACTTCCTAAGGTTGAAAGAAGCTGAGCGGAAACTGGTTATGCTTTGTGGGGTAGTCAATTCGTTTGCATTAAGGGAGTCACACTACAGGAAAATAATTGACAGAAGATATTGCAATCTCCAGAAAGCTGAGGAAGAGGTGGATTTGTTGGGAGATGAGGTT
GACAGCGTTTTAAGTTTGCTGGGGAAAGTGTATGTTGTGCTTAACCACTATGCACCAATATTGCAACATTATCCAGGGATCCCTGATGTTGTGAATTTGATCAAGAAAGAGATAGCAGGCCGTTTTGATACAGAGCTTAAGCTTTGTGGCACCTTGTGAACTTTGGGTAGGCCCTTTGGAAAGGCATTTATTTGAAATTG
ATCGAGAGGATGAAGATACTTCGTGCCTTTGGTTTGTTCATGTCGTCGTGGGAAAGTAAAATTTATGTGCTTTGCAGATATTTTCAGCTCTATTCATCATTCTCAGTTTCTCTGTCTCATCCAACACTTAATTATGATTTAGTCCGAGCTGAACCAGGTGGCTTTAAGAATAAAGTGTCAGATTTTGGATGTCGTACTGA
GTCATTTTTGATATGGTAGGCATTGCTGCCTTACAGTTGTCATAAAGATTGAGATAAGTGCTAGTTTGGAGGGATTAGGATTAGTTATAGTTGAAGTCAATGATATCAACCAAAGTTCAGCTTGCTCATATGCCCCAGCTGAAACATATCCTTTGTCTTAGTCAAGTAATCATTCAACTTGAGTTGGATCTCTAAGCTGC
AAATTAGTCTTGTGAACAAAGCTCTGGTCCGTAGTTCACAGGCTTCTAGAATTCTTTTGTTTATACAAAGGCATTGAATGTACATAGGAAGAGGATTGCTATTTCAATAGCTCTCAATTGCAATGCAGTGGTAGTCAAGTTCTTTTGTATAATATATTCTGACTCTTTCATTATTTATTCTATTGCATGTAAAAATAAGG
TTCTAGTTATTAGAGGAAAAATTCAACAAGCCAGTATACTAGAATTTGCAACGCTATGGTGGCCAAAAGTTTTGGTGAAATTTCTTCTCTGATTTGTCATTCTTTCTGTAGCTGCATCTCAGGTAAATAAGGCCAAAACTTCTCAAAGAAACAGTTCAGGATGTATTTTGTTTGTGTTCAGATTTCCTAGGGTTTAATGA
TTATAATGCTCTGTTGATCTTGGGATATAGTTTTGTATATCACTGAAGAACCAGGTACACGCCTCAGGAGACAATTCGATATATTAAATGACATGTTCTTTAGAATTCAAGATTATGTTGTTTCTCATAGAGTGTTTGGTTATTCTTGTGGGACAAGTCAAGTCCTTACAAAGCAATTACATATGGAAGAGGGGAAAATG
CCATATTCTAATGTGATTTAATTTCATTCCATTCTTCATTTAGGTACTTTAATAGGATATAAATGCCATATTCTTCAGTGGCTTATTTTATTCCATTCTTCATTTTTTATTGGCAGGTACTTCTATAGGAATAAATGGAATATATTTTATATTATTTTCTATTTGGTAACTGGTTATACTGAAGCATTTCGTACTTGGTT
GGTAACTGGTTATACTGAAG




Intron 2 GTATTTACTC ... TTGTTTGCAG

SampleRetention score (%)Exon junction reads5'ss reads3'ss reads
A115.9821813
A213.5164128
A311.96921114
A422.9237814
A52.71801
A613.722171950
A7113523354
A811.473823564
A910.182031729
A1010.022381835



>TRINITY_DN109439_c0_g2_i5 from sample A4 / Example spliced isoform
AAAGCCTCCTTTTGTGGAAGACTATTTTGTCCGGCTTGCATGGACTGACAATTGTAACTTGGATTGACCATACTTTAATTAAACGCGTCCGCCTCGCGGGGCCATAGTTTAGCGCGCAATTTAGTGATCCGGACGAACTTGGCGGCGCCGTCGAATAATCTAGCGTTTCCCCCTTCTTTGGGTACGAATTAACGATGAAC
AAAGAGGCAACGCAAAATAAAAGTACGAAACCCAGTCCCACAAGTCCCACATCTACAGAGATTCCGGGATCGAAACCCTTGCCCCTTGCCGCTTGAGTTTCCTCGGACAATCCGGCCACAACAAGTCGTGTAGATACATACAAAAATCGCAAAAATTAACTCCGGGTTAATTGATGCTCGGGGTGCCAGGAATCAGGTGT
TCCGTTATGTAACGGTGGCTAAACATTTCCGGTCATAGTAACCTTAAGGTGAGCAAACTGATTTTCGGGCAATAAAGATTTGCGGCAGCTGCACGCAGGCTAATGAGAGGTAGCTTGATTTTTCATTTTATTCAAGGGAGCTCAACTTAACAGGGTTATTATACTGGGAGTGCTTGATGGGAATGAATAGTTGGGAAGAA
TGCCCATGCATTTGTATTTTGAATAATTCCAGTTTGGAGAGCTTAGAACTTCAAGTCTTCTTTTGAAACAATTATTGGTAGCAAGCAACTTTCCATAATAAAATACTCACGCAGGGCAAATCTGAATAGTGACTGAAATCTGTTGCATAGTCCATTAATGTAATGGAAGCTTTGAATTTCAGATTTGTCATGTTTGGATG
AGATCACAGGACAAGGTCATCGACATATAAAAATACTGTGAAATACATTGAATGGGAGGAGAGCAGGATTGTCTTTCAGGTTAAAAAAGACATGAAAGACAGAGACATCAGTTGCTTTAAACAAAAGCTTAAATTTAACCTTACTCGAGGATTTAAATAGAATATAAATGGGAAATGAGTCAATTTGTTTCTCAATTAGC
AACAAGGTTTTGCAAGAACAGCTTGTATTGAAAGAAGGAAATGAACAGATTGAGGAATTAGAAAGAATTCATTTAGAAAAAGATGAACAAATTGCTTTGTTGGAGAGATCAATCTTCGAGAAGAACTCAGCAATGTCAGCTCTTCAGAGGCAGAATGATGAATTGCTGCAGAAGGTACATGCTTTTAGTGAGAGTACAAA
GAGGGGAGAAACCAAACAACAGGTAAGGCTTAAAGATCTGGTGGGAAGATCAGATACACAGAATTCTCTAGATTTGTCCTTGCCTTGGTCCAAATGTAATGGGAAAAGGTCGATATCAGAAAATCAGATTTCAAGTTCTCATCAAGAGTTAGAACTGTTGAAATTCGGGATGCCAGCTAAAGCTTTCAGTAAGAATTCCA
ATGCCATTTGTTTGCCATCTTTTCTCGCAGAAGGGAAGAAAGAAGACATAATCAGTGTTCAGAGAAACATTTGTGCAATGCAGGAGGAAAATTCTATGATTAATGGGACAGCAAAGATTGTTGAAGGCCATGTTACTAGAGAATCGTCTCTGTTAGACAATTTCTCTGTTGATACTGCAGATATTATTCTAGAGTCACCA
TTGAAAAGCATGTCAAAGGAGCAACTAATATCCCATTATATGAGGGTGGTGGCTGCTCTGAGAAGGGATAAAGAGATACTCCTGTCTGAAAAAACAGAAGAGATTTACAGGCTTAAGAGGCAATGCTTGAGAGAAAGAGGAAATGGCAGAGAGATAGCTGCACTCAAAAGAAGGCTTGGTGATAGGACTAAAGAATTGGA
TGAAGTTATTAAGGGGAATGAACAATTGGTTGTGTCAAGAAGATTTTCAGATGAGGAGTCTGAGATTACTTCTGAGATGGAGGATGAATTGCAAGATGAGAAGAGAAGTATGCTGGAGCTCATTACAGGGGAAGAAAGGGAATCCAAAGAGCTATCTGATAGTATAGGATTAGAACAGTCATTGAGAGAAGTATGCTGGA
GCTCATTACAGGGGAAGAAAGGGAATCCAAAGAGCTATCTGATAGTATAGGATTAGAACAGTCATTGAGGGAAGGTTATTTGTTGGAGCAGATAGAAGAGTTGGAAAATGATAAGGAATATATCAAAGTAACAAACAAGAATGAAATAGACATACTGAGAATTTGTTTGGAAGAGACTATCAAAGACCAAACTATCTCCT
TAAATTTGGCAATTAAGAAATCTGCAGAGCTGAGGGAGCAGAAGCATATGCTTGAAGATATTATTCAGGAGAAAGATAGGAGTTTAGCTCTGAAGGAAAAAGAGGATCAAAATCAGCAAATCATTTTGAGGGCGAAACTGCTAGAAGAGAAGGAAAATGAATATAAAAAACAGCAAGATTTGTTGCAGCAATCCCTTAAA
GAATGCCAAGAGTTGAAGAAACATAATAGTTTGCTTGAAACTCTAACACTGCAAAAAGAGAGAGCCTTAAATTTAGTGACGAAGGAACAGGAGGAGCTGAAGAAACAAGTTGTTTTTCTGGAGGGAGCTGTCCAAGAAAATAATTTTTTTACAAGTGCAACCTCAAGGGATTTGGAGGAAGCAAGGAATGAGAAAATGAT
GCTTGAGGAAACTATTAGAGACAGGGAAAGAACCTTGGATCGAGTTATTATGAAAGAGGAAGAAAAGAGAATGGAACTTGAGAGAATCATTGCAGAGAAAGATAATGCCTTGACCTTCAATCAAAAAGAGATTGAAAAACAGACAAAAGGAACAATTCTGCTCAAGGAATGCCTTGAACAGAAGGAAGCATCTCTTGAGT
GGGCATTGATGCAGATAAAGGAAGAAGAGAAACATAAAGAGTTCTTTGAGGCAAAGGTACAAAAGCTTGAGGATTGCATCATAGACTTAGAAATGAATCAAAAGCAGAGTAAAATGCAATTAGAAAGGTATTTTAGGAATGTCATGGATGCATCTCTGAAGTTTGAAGAAACGGCATTGGAAAAACTCCATCACAACTTC
CTAAGGTTGAAAGAAGCTGAGCGGAAACTGGTTATGCTTTGTGGGGTAGTCAATTCGTTTGCATTAAGGGAGTCACACTACAGGAAAATAATTGACAGAAGATATTGCAATCTCCAGAAAGCTGAGGAAGAGGTGGATTTGTTGGGAGATGAGGTTGACAGCGTTTTAAGTTTGCTGGGGAAAGTGTATGTTGTGCTTAA
CCACTATGCACCAATATTGCAACATTATCCAGGGATCCCTGATGTTGTGAATTTGATCAAGAAAGAGATAGCAGGCCGTTTTGATACAGAGCTTAAGCTTTGTGGCACCTTGTGAACTTTGGGTAGGCCCTTTGGAAAGGCATTTATTTGAAATTGATCGAGAGGATGAAGATACTTCGTGCCTTTGGTTTGTTCATGTC
GTCGTGGGAAAGTAAAATTTATGTGCTTTGCAGATATTTTCAGCTCTATTCATCATTCTCAGTTTCTCTGTCTCATCCAACACTTAATTATGATTTAGTCCGAGCTGAACCAGGTGGCTTTAAGAATAAAGTGTCAGATTTTGGATGTCGTACTGAGTCATTTTTGATATGGTAGGCATTGCTGCCTTACAGTTGTCATA
AAGATTGAGATAAGTGCTAGTTTGGAGGGATTAGGATTAGTTATAGTTGAAGTCAATGATATCAACCAAAGTTCAGCTTGCTCATATGCCCCAGCTGAAACATATCCTTTGTCTTAGTCAAGTAATCATTCAACTTGAGTTGGATCTCTAAGCTTCAAATTAGTCTTGTGAACAAAGCTCTGGTCCGTAGTTCACAGGCT
TCTAGAATTCTTTTGTTTATACAAAGGCATTGAATGTACATAGGAAGAGGATTGCTATTTCAATAGCTCTCAATTGCAATGCAGTGGTAGTCAAGTTCTTTTGTATAATATATTCTGACTCTTTCATTATTTATTCTATTGCATGTAAAAATAAGGTTCTAGTTATTAGAGGAAAAATTCAACAAGCCAGTATACTAGAA
TTTGCAACGCTATGGTGGCCAAAAGTTTTGGTGAAATTTCTTCTCTGATTTGTCATTCTTTCTGTAGCTGCATCTCAGGTAAATAAGGCCAAAACTTCTCAAAGAAACAGTTCAGGATGTATTTTGTTTGTGTTCAGATTTCCTAGGGTTTAATGATTATAATGCTCTGTTGATCTTGGGATATAGTTTTGTATATCACT
GAAGAACCAGGTACACGCCTCAGGAGACAATTCGATATATTAAATGACATGTTCTTTAGAATTCAAGATTATGTTGTTTCTCATAGAGTGTTTGGTTATTCTTGTGGGACAAGTCAAGTCCTTACAAAGCAATTACATATGGAAGAGGGGAAAATGCCATATTCTAAAGTGATTTACTTTCATTCCATTCTTCATTTAGG
TACTTTAATAGGATATAAATGCCATATTCTTCAGTGGTTTATTTTATTCCATTCTTCATTTTTTATTGGCAGGTACTTCTATAGGAATAAATGGAATATATTTTATATTATTTTCTATTTGGTAACTGGTTATACTGAAGCATTTCGTACTTGGTTGGTTGTCTGGTGTAAAAGATATTTCGTATATGGTTGGCACATGC
CTCTTGAGCTGTTGGAATGATCCATTAGGTAGGGATAGTAGTCGTATTAATAATTAACGTGGAATATAAACCTG


>TRINITY_DN109439_c0_g2_i2 from sample A4 / Example unspliced isoform:
AAAGCCTCCTTTTGTGGAAGACTATTTTGTCCGGCTTGCATGGACTGACAATTGTAACTTGGATTGACCATACTTTAATTAAACGCGTCCGCCTCGCGGGGCCATAGTTTAGCGCGCAATTTAGTGATCCGGACGAACTTGGCGGCGCCGTCGAATAATCTAGCGTTTCCCCCTTCTTTGGGTACGAATTAACGATGAAC
AAAGAGGCAACGCAAAATAAAAGTACGAAACCCAGTCCCACAAGTCCCACATCTACAGAGATTCCGGGATCGAAACCCTTGCCCCTTGCCGCTTGAGTTTCCTCGGACAATCCGGCCACAACAAGTCGTGTAGATACATACAAAAATCGCAAAAATTAACTCCGGGTTAATTGATGCTCGGGGTGCCAGGAATCAGGTGT
TCCGTTATGTAACGGTGGCTAAACATTTCCGGTCATAGTAACCTTAAGGTGAGCAAACTGATTTTCGGGCAATAAAGATTTGCGGCAGCTGCACGCAGGCTAATGAGAGGTAGCTTGATTTTTCATTTTATTCAAGGGAGCTCAACTTAACAGGGTTATTATACTGGGAGTGCTTGATGGGAATGAATAGTTGGGAAGAA
TGCCCATGCATTTGTATTTTGAATAATTCCAGTTTGGAGAGCTTAGAACTTCAAGTCTTCTTTTGAAACAATTATTGGTAGCAAGCAACTTTCCATAATAAAATACTCACGCAGGGCAAATCTGAATAGTGACTGAAATCTGTTGCATAGTCCATTAATGTAATGGAAGCTTTGAATTTCAGATTTGTCATGTTTGGATG
AGATCACAGGACAAGGTCATCGACATATAAAAATACTGTGAAATACATTGAATGGGAGGAGAGCAGGATTGTCTTTCAGGTTAAAAAAGACATGAAAGACAGAGACATCAGTTGCTTTAAACAAAAGCTTAAATTTAACCTTACTCGAGGATTTAAATAGAATATAAATGGGAAATGAGTCAATTTGTTTCTCAATTAGC
AACAAGGTTTTGCAAGAACAGCTTGTATTGAAAGAAGGAAATGAACAGATTGAGGAATTAGAAAGAATTCATTTAGAAAAAGATGAACAAATTGCTTTGTTGGAGAGATCAATCTTCGAGAAGAACTCAGCAATGTCAGCTCTTCAGAGGCAGAATGATGAATTGCTGCAGAAGGTACATGCTTTTAGTGAGAGTACAAA
GAGGGGAGAAACCAAACAACAGGTAAGGCTTAAAGATCTGGTGGGAAGATCAGATACACAGAATTCTCTAGATTTGTCCTTGCCTTGGTCCAAATGTAATGGGAAAAGGTCGATATCAGAAAATCAGATTTCAAGTTCTCATCAAGAGTTAGAACTGTTGAAATTCGGGATGCCAGCTAAAGCTTTCAGTAAGAATTCCA
ATGCCATTTGTTTGCCATCTTTTCTCGCAGAAGGGAAGAAAGAAGACATAATCAGTGTTCAGAGAAACATTTGTGCAATGCAGGAGGAAAATTCTATGATTAATGGGACAGCAAAGATTGTTGAAGGCCATGTTACTAGAGAATCGTCTCTGTTAGACAATTTCTCTGTTGATACTGCAGATATTATTCTAGAGTCACCA
TTGAAAAGCATGTCAAAGGAGCAACTAATATCCCATTATATGAGGGTGGTGGCTGCTCTGAGAAGGGATAAAGAGATACTCCTGTCTGAAAAAACAGAAGAGATTTACAGGCTTAAGAGGCAATGCTTGAGAGAAAGAGGAAATGGCAGAGAGATAGCTGCACTCAAAAGAAGGCTTGGTGATAGGACTAAAGAATTGGA
TGAAGTTATTAAGGGGAATGAACAATTGGTTGTGTCAAGAAGATTTTCAGATGAGGAGTCTGAGATTACTTCTGAGATGGAGGATGAATTGCAAGATGAGAAGAGAAGTATGCTGGAGCTCATTACAGGGGAAGAAAGGGAATCCAAAGAGCTATCTGATAGTATAGGATTAGAACAGTCATTGAGAGAAGTATGCTGGA
GCTCATTACAGGGGAAGAAAGGGAATCCAAAGAGCTATCTGATAGTATAGGATTAGAACAGTCATTGAGGGAAGGTTATTTGTTGGAGCAGATAGAAGAGTTGGAAAATGATAAGGAATATATCAAAGTAACAAACAAGAATGAAATAGACATACTGAGAATTTGTTTGGAAGAGACTATCAAAGACCAAACTATCTCCT
TAAATTTGGCAATTAAGAAATCTGCAGAGCTGAGGGAGCAGAAGCATATGCTTGAAGATATTATTCAGGAGAAAGATAGGAGTTTAGCTCTGAAGGAAAAAGAGGATCAAAATCAGCAAATCATTTTGAGGGCGAAACTGCTAGAAGAGAAGGAAAATGAATATAAAAAACAGCAAGATTTGTTGCAGCAATCCCTTAAA
GAATGCCAAGAGTTGAAGAAACATAATAGTTTGCTTGAAACTCTAACACTGCAAAAAGAGAGAGCCTTAAATTTAGTGACGAAGGAACAGGAGGAGCTGAAGAAACAAGTTGTTTTTCTGGAGGGAGCTGTCCAAGAAAATAATTTTTTTACAAGTGCAACCTCAAGGGATTTGGAGGAAGCAAGGAATGAGAAAATGAT
GCTTGAGGAAACTATTAGAGACAGGGAAAGAACCTTGGATCGAGTTATTATGAAAGAGGAAGAAAAGAGAATGGAACTTGAGAGAATCATTGCAGAGAAAGATAATGCCTTGACCTTCAATCAAAAAGAGATTGAAAAACAGACAAAAGGAACAATTCTGCTCAAGGAATGCCTTGAACAGAAGGAAGCATCTCTTGAGT
GGGCATTGATGCAGATAAAGGAAGAAGAGAAACATAAAGAGTTCTTTGAGGCAAAGGTACAAAAGCTTGAGGATTGCATCATAGACTTAGAAATGAATCAAAAGCAGAGTAAAATGCAATTAGAAAGGTATTTTAGGAATGTCATGGATGCATCTCTGAAGTTTGAAGAAACGGCATTGGAAAAACTCCATCACAACTTC
CTAAGGTTGAAAGAAGCTGAGCGGAAACTGGTTATGCTTTGTGGGGTAGTCAATTCGTTTGCATTAAGGGAGTCACACTACAGGAAAATAATTGACAGAAGATATTGCAATCTCCAGAAAGCTGAGGAAGAGGTGGATTTGTTGGGAGATGAGGTTGACAGCGTTTTAAGTTTGCTGGGGAAAGTGTATGTTGTGCTTAA
CCACTATGCACCAATATTGCAACATTATCCAGGGATCCCTGATGTTGTGAATTTGATCAAGAAAGAGATAGCAGGCCGTTTTGATACAGAGCTTAAGCTTTGTGGCACCTTGTGAACTTTGGGTAGGCCCTTTGGAAAGGCATTTATTTGAAATTGATCGAGAGGATGAAGATACTTCGTGCCTTTGGTTTGTTCATGTC
GTCGTGGGAAAGTAAAATTTATGTGCTTTGCAGATATTTTCAGCTCTATTCATCATTCTCAGTTTCTCTGTCTCATCCAACACTTAATTATGATTTAGTCCGAGCTGAACCAGGTGGCTTTAAGAATAAAGTGTCAGATTTTGGATGTCGTACTGAGTCATTTTTGATATGGTAGGCATTGCTGCCTTACAGTTGTCATA
AAGATTGAGATAAGTGCTAGTTTGGAGGGATTAGGATTAGTTATAGTTGAAGTCAATGATATCAACCAAAGTTCAGCTTGCTCATATGCCCCAGCTGAAACATgtatttactcttcctccactaaactttggtatttccatgtttgtaattttcatgaatgattgtaagctgtactttggataataattgtggtcaaggc
atatcaatagtgatgtccaagtttttgttatatctttatttatttatttcttagaattcgttattctactgaattaaatactaatgtgacaaatctgttctttgtttgcag
ATCCTTTGTCTTAGTCAAGTAATCATTCAACTTGAGTTGGATCTCTAAGCTTCAAATTAGTCTTGTGAACAAAGCTCTGGTCCGTAGTT
CACAGGCTTCTAGAATTCTTTTGTTTATACAAAGGCATTGAATGTACATAGGAAGAGGATTGCTATTTCAATAGCTCTCAATTGCAATGCAGTGGTAGTCAAGTTCTTTTGTATAATATATTCTGACTCTTTCATTATTTATTCTATTGCATGTAAAAATAAGGTTCTAGTTATTAGAGGAAAAATTCAACAAGCCAGTA
TACTAGAATTTGCAACGCTATGGTGGCCAAAAGTTTTGGTGAAATTTCTTCTCTGATTTGTCATTCTTTCTGTAGCTGCATCTCAGGTAAATAAGGCCAAAACTTCTCAAAGAAACAGTTCAGGATGTATTTTGTTTGTGTTCAGATTTCCTAGGGTTTAATGATTATAATGCTCTGTTGATCTTGGGATATAGTTTTGT
ATATCACTGAAGAACCAGGTACACGCCTCAGGAGACAATTCGATATATTAAATGACATGTTCTTTAGAATTCAAGATTATGTTGTTTCTCATAGAGTGTTTGGTTATTCTTGTGGGACAAGTCAAGTCCTTACAAAGCAATTACATATGGAAGAGGGGAAAATGCCATATTCTAAAGTGATTTACTTTCATTCCATTCTT
CATTTAGGTACTTTAATAGGATATAAATGCCATATTCTTCAGTGGTTTATTTTATTCCATTCTTCATTTTTTATTGGCAGGTACTTCTATAGGAATAAATGGAATATATTTTATATTATTTTCTATTTGGTAACTGGTTATACTGAAGCATTTCGTACTTGGTTGGTTGTCTGGTGTAAAAGATATTTCGTATATGGTTG
GCACATGCCTCTTGAGCTGTTGGAATGATCCATTAGGTAGGGATAGTAGTCGTATTAATAATTAACGTGGAATATAAACCTG




Intron 3 GTAGATATAG ... TTCTGTATAG

SampleRetention score (%)Exon junction reads5'ss reads3'ss reads
A114.1671012
A218.854817
A39.636176
A413.2146410
A52527612
A60100
A720.993298
A89.09501
A92028212
A1012.244366



>TRINITY_DN105135_c0_g1_i1 from sample A5 / Example spliced isoform
CTTGGATTGACCATACTTTAATTAAACGCGTCCGCCTCGCGGGGCCATAGTTTAGCGCGCAATTTAGTGATCCGGACGAACTTGGCGGCGCCGTCGAATAATCTAGCGTTTCCCCCTTCTTTGGGTACGAATTAACGATGAACAAAGAGGCAACGCAAAATAAAAGTACGAAACCCAGTCCCACAGGTCCCACATCTACA
GAGATTCCGGGATCGAAACCCTTGCCCCTTGCCGCTTGAGTTTCCTCGGACAATCCGGCCACAACAAGTCGTGCAGATACAAACAAAAATCGCAAAAATTAACTCCGGGTTAATTGATGCTCGGGGGGTGCCGGGAATCGGGCGTTCCGTTATGTAACGGTGGCTAAACATTTCCGCGCAGGTCATAGTAACCTTAAGGT
GAGCAAACTGATTTTCGGGCAATAAAGATTTGCGGCAGCTGCACGCAGGCTAATGAGAGGTAGCTTGATTTTTCATTTTATTCAAGGGAGCTCAACTTAACAGGGTTATTATACTGGGAGTGCTTGATGGGAATGAATAGTTGGGAAGAATGCCCATGCATTTGTATTTTGAATAATTCCAGTTTGGAGAGCTTAGAACT
TCAAGTCTTCTTTTGAAACAATTATTGGTAGCAAGCAACTTTCCATAATAAAATACTCACGCAGGGCAAATCTGAATAGTGACTGAAATCTGTTGCATAGTCCATTAATGTAATGGAAGCTTTGAATTTCAGATTTGTCATGTTTGGATGAGATCACAGGACAAGGTCATCGACATATAAAAATACTGTGAAATACATTG
AATGGGAGGAGAGCAGGATTGTCTTTCAGGTAAAAAAAGACATGAAAGACAGAGACATCAGTTGCTTGAAACAAAAGCTTAAATTTAACCTTACTCGAGGATTTAAATAGAATATAAATGGGAAATGAGTCAATTTGTTTCTCAATTAGCAACAAGGTTTTGCAAGAACAGCTTGTATTGAAAGAAGGAAATGAACAGAT
TGAGGAATTAGAAAGAATTCATTTAGAAAAAGATGAACAAATTGCTTTGTTGGAGAGATCAATCTTCGAGAAGAACTCAGCAATGTCAGCTCTTCAGAGGCAGAATGATGAATTGCTGCAGAAGGTACATGCTTTTAGTGAGAGTACAAAGAGGGGAGAAACCAAACAACAGGTAAGGCTTAAAGATCTGGTGGGAAGAT
CAGATACACAGAATTCTCTAGATTTGTCCTTGCCTTGGTCCAAATGTAATGGGAAAAGGTCAATATCAGAAAATCAGATTTCAAGTTCTCATCAAGAGCTAGAACTGTTGAAATTTGGGATGCCAGCTAAAGCTTTCAGTAAGAATTCCAATGCCATTTGTTTGCCATCTTTTCTCGCAGAAGGGAAGAAAGAAGACATA
ATCAGTGTTCAGAGAAACATTTGTGCAATGCAGGAGGAAAATTCTATGATTAATGGGACAGCAAAGATTGTTGAAGGCCATGTTACTAGAGAATCGTCTCTGTTAGACAATTTCTCTGTTGATACTGCAGATATTATTCTAGAGTCACCATTGAAAAGCATGTCAAAGGAGCAACTAATATCCCATTATATGAGGGTGGT
GGCTGCTCTGAGAAGGGATAAAGAGATACTCCTGTCTGAAAAAACAGAAGAGATTTACAGGCTTAAGAGGCAATGCTTGAGAGAAAGAGGCAATGGCAGAGAGATAGCTGCACTCAAAAGAAGGCTTGGTGATAGGACTAAAGAATTGGATGAAGTTATTAAGGGGAATGAACAATTGGTTGTGTCAAGAAGATTTTCAG
ATGAGGAGTCTGAGATTACTTCTGAGATGGAGGATGAATTGCAAGATGAGAAGAGAAGTATGCTGGAGCTCATTACAGGGGAAGAAAGGGAATCCAAAGAGCTATCTGATAGTATAGGATTAGAACAGTCATTGAGGGAAGGTTATTTGTTGGAGCAGATAGAAGAGTTGGAAAATGATAAGGAATATATCAAAGTAACA
AACAAGAATGAAATAGACATACTGAGAATTTGTTTGGAAGAGACTATCAAAGACCAAACTATCTCCTTAAATTTGGCAATTAAGAAATCTGCAGAGCTGAGGGAGCAGAAGCATATGCTTGAAGATATTATTCAGGAGAAAGATAGGAGTTTAGCTCTGAAGGAAAAAGAGGATCAAAATCAGCAAATCATTTTGAGGGC
GAAACTGCTAGAAGAGAAGGAAAATGAATATAAAA


>TRINITY_DN105135_c0_g1_i2 from sample A5 / Example unspliced isoform:
CTTGGATTGACCATACTTTAATTAAACGCGTCCGCCTCGCGGGGCCATAGTTTAGCGCGCAATTTAGTGATCCGGACGAACTTGGCGGCGCCGTCGAATAATCTAGCGTTTCCCCCTTCTTTGGGTACGAATTAACGATGAACAAAGAGGCAACGCAAAATAAAAGTACGAAACCCAGTCCCACAGGTCCCACATCTACA
GAGATTCCGGGATCGAAACCCTTGCCCCTTGCCGCTTGAGTTTCCTCGGACAATCCGGCCACAACAAGTCGTGTAGATACATACAAAAATCGCAAAAATTAACTCCGGGTTAATTGATGCTCGGGGTGCCAGGAATCAGGTGTTCCGTTATGTAACGGTGGCTAAACATTTCCGgtagatatagttttgttgttacatat
tgtaaaatatgcagttcagtttcagtgaaagtataatcgtgaatttataagggaaatcatctttcgcatacctatttccttttaaatacaattatttctgtatag
CGCAGGTCATAGTAACCTTAAGGTGAGCAAACTGATTTTCGGGCAATAAAGATTTGCGGCAGCTGCACGCAGGCTAATGAGAGGTAGCTTGATTT
TTCATTTTATTCAAGGGAGCTCAACTTAACAGGGTTATTATACTGGGAGTGCTTGATGGGAATGAATAGTTGGGAAGAATGCCCATGCATTTGTATTTTGAATAATTCCAGTTTGGAGAGCTTAGAACTTCAAGTCTTCTTTTGAAACAATTATTGGTAGCAAGCAACTTTCCATAATAAAATACTCACGCAGGGCAAAT
CTGAATAGTGACTGAAATCTGTTGCATAGTCCATTAATGTAATGGAAGCTTTGAATTTCAGATTTGTCATGTTTGGATGAGATCACAGGACAAGGTCATCGACATATAAAAATACTGTGAAATACATTGAATGGGAGGAGAGCAGGATTGTCTTTCAGGTAAAAAAAGACATGAAAGACAGAGACATCAGTTGCTTGAAA
CAAAAGCTTAAATTTAACCTTACTCGAGGATTTAAATAGAATATAAATGGGAAATGAGTCAATTTGTTTCTCAATTAGCAACAAGGTTTTGCAAGAACAGCTTGTATTGAAAGAAGGAAATGAACAGATTGAGGAATTAGAAAGAATTCATTTAGAAAAAGATGAACAAATTGCTTTGTTGGAGAGATCAATCTTCGAGA
AGAACTCAGCAATGTCAGCTCTTCAGAGGCAGAATGATGAATTGCTGCAGAAGGTACATGCTTTTAGTGAGAGTACAAAGAGGGGAGAAACCAAACAACAGGTAAGGCTTAAAGATCTGGTGGGAAGATCAGATACACAGAATTCTCTAGATTTGTCCTTGCCTTGGTCCAAATGTAATGGGAAAAGGTCAATATCAGAA
AATCAGATTTCAAGTTCTCATCAAGAGCTAGAACTGTTGAAATTTGGGATGCCAGCTAAAGCTTTCAGTAAGAATTCCAATGCCATTTGTTTGCCATCTTTTCTCGCAGAAGGGAAGAAAGAAGACATAATCAGTGTTCAGAGAAACATTTGTGCAATGCAGGAGGAAAATTCTATGATTAATGGGACAGCAAAGATTGT
TGAAGGCCATGTTACTAGAGAATCGTCTCTGTTAGACAATTTCTCTGTTGATACTGCAGATATTATTCTAGAGTCACCATTGAAAAGCATGTCAAAGGAGCAACTAATATCCCATTATATGAGGGTGGTGGCTGCTCTGAGAAGGGATAAAGAGATACTCCTGTCTGAAAAAACAGAAGAGATTTACAGGCTTAAGAGGC
AATGCTTGAGAGAAAGAGGCAATGGCAGAGAGATAGCTGCACTCAAAAGAAGGCTTGGTGATAGGACTAAAGAATTGGATGAAGTTATTAAGGGGAATGAACAATTGGTTGTGTCAAGAAGATTTTCAGATGAGGAGTCTGAGATTACTTCTGAGATGGAGGATGAATTGCAAGATGAGAAGAGAAGTATGCTGGAGCTC
ATTACAGGGGAAGAAAGGGAATCCAAAGAGCTATCTGATAGTATAGGATTAGAACAGTCATTGAGGGAAGGTTATTTGTTGGAGCAGATAGAAGAGTTGGAAAATGATAAGGAATATATCAAAGTAACAAACAAGAATGAAATAGACATACTGAGAATTTGTTTGGAAGAGACTATCAAAGACCAAACTATCTCCTTAAA
TTTGGCAATTAAGAAATCTGCAGAGCTGAGGGAGCAGAAGCATATGCTTGAAGATATTATTCAGGAGAAAGATAGGAGTTTAGCTCTGAAGGAAAAAGAGGATCAAAATCAGCAAATCATTTTGAGGGCGAAACTGCTAGAAGAGAAGGAAAATGAATATAAAA