sp|Q8VYZ0|ORTH2_ARATH ----> E3 ubiquitin-protein ligase ORTHRUS 2

Intron 1 GTAAGGATGA ... CTGTTTCTAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	31.2	57.5	0	26
A2	21.29	52	0	14
A3	21.86	46.5	0	13
A4	20.23	56.5	1	14
A5	13.75	19	0	3
A6	18.8	52.5	0	12
A7	17.34	86.5	0	18
A8	21.24	71	0	19
A9	12.91	108.5	0	16
A10	18.87	74	0	17

>TRINITY_DN105826_c0_g1_i2 from sample A2 / Example spliced isoform

CGAAGAGATTTTGAATTTATCAAACAAAACTCTATATTTAAAAAGGGATCGAGGTCCACGAAGGAACGAAAACTTTTAAAAAATTGCAAGGAATTCGTCATAGACAAGCTACCCACAGCACTTCAGAATAAGATTTCAATCAGCCCCGGAATGAGTTTGCGGTAATTCTGGTTCCAATTCTGCAATCAATGTACACTCAT
TCCTCTTCAGAATCTGCACATATCTGATTGTTCGATCAAGAGCATTCATTCATTGGCTGAAAACGGGGATTAATTTGATGGGTAGCAAAGGGGAGTCTTTAGGAAGGAAAATAGAATGGAGCCCCTCTATCGGAGACGAACAGAAGCCCAGTTCTTCACGGGCTAGGCATGTTTCCGCTGACTCGATTCATTCGGATATG
GAGATCCAAGCAGATGAAATGGCAATAAATTCATCGATCACAGGGTCTAGCAGTCCTATTACTCACGATATTTTCAAAGTATATAGAAATGTGGACGCAGGGATTGTAAAACTTCAGAATCTAAGTTCTCATGAGATTCTTATTAATGGACAATTATTGGAAGAAAAGGAACACATTGCCATTGAAAGTGGAAATGAATT
TGTTCTTGGCCCTGAAAGAAAAGGGTATCCAACTTATTGTGTCCATTTCATACATGGAGAGCAGCGCAGTGAATGCAGTGAAAAGGTATCTTCACTTGTAGATAACTTGAAATGTGGTATTTGCCTGAATATATGGCATGATGTTGTGTCTGTCACACCTTGCCTACATAATTTCTGCAATGCATGCTTTTCACAATGGT
ACAGAAGATTGGAAAGAAAAGGAGACATTTGCATTTGCCCTCAATGCCGATCTGATGTTTATTCTGTCAGTCGAAACCATTCTCTACGGAATATCGTTGAGGATATGATGAAAAACAATCCATCATTGCAGCATTCAGATGAAGACATTATACGGTTGGATAAAGATGCTGTGGTGCAATCAGATGTCGGTATCCAACTT
ATTGTGTCCATTTCATACATGGAGAGCAGCGCAGTGAATGCAGTGAAAAGGTATCTTCACTTGTAGATAACTTGAAATGTGGTATTTGCCTGAATATATGGCATGATGTTGTGTCTGTCACACCTTGCCTACATAATTTCTGCAATGCATGCTTTTCACAATGG

>TRINITY_DN105826_c0_g1_i3 from sample A2 / Example unspliced isoform:

ACACCTTGCCTACATAATTTCTGgtaaggatgacttgaaatattttctatgtaattattggctactgtgtcatgacaaagcattgagactgattcttgaagtcactgtttctagCAATGCATGCTTTTCACAATGGTACAGAAGATTGGAAAGAAAAGGAGACATTTGCATTTGCCCTCAATGCCGATCTGATGTTTATT
CTGTCAGTCGAAACCATTCTCTACGGAATATCGTTGAGGATATGATGAAAAACAATCCATCATTGCAGCATTCAGATGAAGACATTATACGGTTGGATAAAGATGCTGTGGTGCAATCAGATGTTATGATAATAGGCAGTAATATTGCCACTCAAAAATCTACTTTCAGTTCAAGTAGTGTAAGTACTGACGAGAGTTCA
GATGAAGAGATAGAACCTCAATGTCCTCAGTGTCAAGATATTCAAGGTTCAGGTGGGCATTTTCATTGTGAGGAGAATACTGTTCATTTGCAGTGCCGATCGTGCTGGGGGCTGATGCCATTAAGAACTGATATAGCTGTTCCTCAAATGTGTGGAGGATGCAGAAAGATACTCTGCAGTGCATATTGGGATTCACAAAA
TGCCATACATCCGAACTCTTTTTATGTTCCTTGCACTAATGATGCATTAATACCGATGTTGGGACGTTCCTTCCTAACTTTTCCTGAGCAAACTCATGCGGGGAACCATATTGAACAAGATATCACAAAGGAATATATATCTGAGCGAGGCAGGACAGTGCGTGAGATTGTTCATGGATGCACTTCAAAACTTGACAGTG
GCGAAATTGATCAACCAAAGCTGTCTGTAGCTCCAATTGAGCCAATTACTTCTGCAACACATTTTTGCAATGCTTGTTCACAAACCGTGGCTGCCCATTTCCTGCATTGGTTTCGGCTTTCAATTCCAAAAAGTGAGCTGCCACTGGATGTAGCTAGAAGAGAGGATTGTTGGTGGGGACATGATTGTCGAACTCAACAT
CATAATTTGGACCATGCTCGAAAGCTGAATCATGTCTGCGAGGCAACTCGAAGGGCTCGTAGATAAACAAGCCTATAAGATCGGAGCTGGTGTTAAAAAGCTTGTTCAATGATCTTGTATTTTTGTAATGTGATTAATTTTAAGAACACACCATATATACTGTATATTGATATTCGCATCATGGTATATATCGTATATAT
TGGTATTCATATCACGGTCAAGCGCGTGCTGATTGTTTTTGTCATTGGTAAGTAGTTGTGCAATCTCAAGATTATATCCCCTCTTGTCAAGGTTGGGGTTGCTTTTCTTGTTTACTATGTTTAAAGGCCTGAGATTATGCATATCACGCTGGGACTTCGGTACACTGGTTTATTTGATTCAACAGCAAATTCGTTTACGA