NA ----> NA
Intron 1 GTAAGAAGAA ... GTCTTCACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 93.33 | 3 | 2 | 42 |
| A2 | 88.89 | 2 | 4 | 16 |
| A3 | 81.82 | 10 | 10 | 45 |
| A4 | 95.65 | 1 | 2 | 22 |
| A5 | 59.09 | 9 | 0 | 13 |
| A6 | -1 | 0 | 0 | 0 |
| A7 | 83.33 | 2 | 0 | 10 |
| A8 | 80 | 1 | 0 | 4 |
| A9 | 78.57 | 6 | 2 | 22 |
| A10 | 100 | 0 | 2 | 10 |
>TRINITY_DN42070_c0_g1_i1 from sample A9 / Example spliced isoformTTTGTCTCGTGCCCTTGGAGATTCCAGTCCGAAGACAAGCACGCTATCTTAAAAATCTACGACCACTAAATTGCCTATGGGAATCCCATTTTGGCAGAGGAACTGCGCTTCGTCTCCAATCTCAGATGGGTTTTTCGCTCGTTATCTCTGGAGGCTTCAAACTGCCACGAAGACTTGGAAACCCACCTCAGCATCACAGG
TGTGTTTTCAAAATTTCCAAGGTAAATATCACTTCAACCCTATCTACAAATTCTGCGATTTTTGCTGAATATAGGCATACTGGAGCTATCAGGCGAAGAAATGCATTGCGTCCAAAACTACTAAAAAGATTGCAGAAACCCAAAATTATCATTGAAACCAATGACAATTCAAAGGTAGATGCAGGGAACTCCGAACCCAT
TGTGGGTAATAATTCCGAGGGGGAAATTGGCGACTCGGAAGCCATTGTAAATGGAGTTGGGGGACCAGAGGCAATTATAAATGGTATCCGGAATACTAGTGATGATTACTTGGAGGTGGTTAATGGGGTTGAAAGTTTCAGGTTTGGTAATACAGAGGTAGAAATTATGAGCGCAGAACGCAGTGCTAATGCGATTCCGG
TTGAGTTCTCACCTGATGGCAGTGCAGAAATGCATATCGGCAGTTCAGAATACAACATTATTGAAACTAAAATGACCACCAATCCAGATCCAGAGTCTGTCACAGGGAAGGATATCGGCCAGAATAGTGCGATAGAAAGCCAAAAAATGGCCATGGAGATTGGCAATTCAAGATTCATAGCTCAAGCAGGAAAAATGTGG
GGTTCATGGAAGAATTGGCATGCACAATACCAGAAGGATATACGGGCTTGGGGTGTTGGGCAGACACCAATTTTTCTGGTTTTTGAAAGTGGTAATGGAGAGGTAAAAGTCTCAATTAATGAAGCTGAGATTTGCAACCGATGCGTGCCCCAGCCTTTCCTTGCATACCGTCCAGATGAAGTGAAGATCTCGAACTCGCG
TACAAAAATAGCACAAGCCAAGCAACTGGCTGAGGATATAGAGGCTGGGTTATTCAAGCCACCAAGAAACAGTACCTTATTTGAGTTTGTAAATACAGAAAAAAATAATTTCGAAAAGTGGGGGGTGTTAGGATCTTTCTTCTCTCAAGCTAGTTCCGTGATTGATCATCCTTCTCCTGTATTTAAAATTTCTAAAATTG
GATTTGTTGTACTGATTAGTTCTGTGCTTGTTTGGGGCGCTTGGAAATATATATTTTACGATGTCCAAGAAGAAATTTACAAGGAAAAACAGAAGATAACAAACACCACAACCAAAAACACAAAGAATGCTGGTGATATTTCTGCTTTGAATTCACAAAACAAAAGAGCTGTCAGCAAAGAAGCTGAAGTTAGGAATACA
GCATTAGTTATGAACTCTTCTTCTGATGGGAAGCCTCAACTCGACGAGACTGAATTCAGCAAGAAGATTCAGGAGATTCAGGCCATGGCAAGGCAGGCTCGTATGATAGAACAACAAAGTTCCGAGGACTTTTCAGAACAGCAGGATGGAGACTACCCCTCAAATTCCAGAACAATGGGAAGAAACACAGATGGTATCAG
AGGTTCTCCTTCAAATTTAAATTTAACGATAAGAGAAACGCATGACGATAGAAACACAGATGAATCAAATTTAAATACTCTAGGAAACGGTGCCAAAATAAATACCAAAAAGGAAGTAATTAACCACCTCGAGAGTGCCCTCTTGTTTCAGCAAACAGGTCTGAAGAAGTTTTCACAGGGCACTGTAGGAAATGATTCGA
CTCATTTCAGAGAAGACCAGAATAGTGATACAACTTTAAGGGAAACTAGGAAGCCAAAGGTTGATACATTACAATATGGGCAAAGTTCTACAGAAAAGGCTGCTGGAAATGAAATGAAGGAATCAGTGGATGGAAGACGGGTAAAGAAAGGCTTAGGCAAGAAAATTGGGTTTGGTGCAAACAGGTCTTCTCTGAAAAGT
TCGAAGAGAATTAAGCCACGAGTGATTAAATCTGTAAATGAAGCCAGGGAAATAATTGCCCATAGGCGTGGTAAACACGGTGATACATCTAGTGACACTTCAAATCCATATGACAAAAAATATATTTCTGCTGAATCAGTGGATACAATAAAGAGTACTGCTATAACTGAAGAGGAAATAAGGTCCGACATAAGGGTTGA
GAGAGAAAGTAATGACAAACTCAAGCCGACTTTTAGAGAAGCTGAAAATGAATCAGAAGAGAAGGTTACAAGTGGAAAAGCTTTAGAAGATGTGTCATCGAAGCACTTGGAAACTGCTCAAGGTAAGGCAAAGATGGATGGTGCAAATAAAAGGGGTACAGGATTGGAGACTCGGCTGGAAATTGATATTCAGGATGGAA
ACAATGCTTTGTCACAGGAGGCAGAAGAGTTGGAATGGATGAGGGATGAGGTTTTGAGGAAAATCATTTTCAAGGTTCAGGATAATGAAAATGCTGGAAGAGAGCCATTGCACGGTTTAGTCTCCGAGGAAGAACTTCTCTTTTTCAGAGGTATGGAGAGGAAATTTGAGCGAGAAGGGGAGAGTGTCAAAATTTGGATC
AAGGAGAGAGTGGAGAATTTAATGAACGGAAAAGATGGCTCTGGAGTTGATGATCCACCCAAGTCTTCTACAACTGCCCGGAAGGATTCTGATAAAGCAGGCAGGTCCATTTTGTCTGATATAAACAACAATGGGAAGATGTTCACGACAGAGAATATGGGGTTTGATAAAGAAGAAAACCAATCTTTCACTGCAGAGAG
GACACCTGTTTTAGCATCTTCATCCATTATTTCAGAGTATTCTTCAATAACGGCAAGAGATGCAAGCTACAAGTCTGATAAAAACCTAGATAGATCAGTTTCAGAAGAAAAAGCAGAGGATGCTTTATTGTTTCCAGAAAGAAACCTTGGAAATTGTGAAACAAGGAAGGCCAAGATAATCGAGGAGCATGAAATGGGTG
ACTGGAAAACAACAGTTAGTAAAAAAAATGAGAGCCAGCAAGAGTTGCAGAACCTTTTATGGTGGATGGATCTTCCATATGTGCTGTGCATTGGTCTTTATAGAAATAACAAAGGCGAGGTGTTGAGAGGCTTATATTCTCTGGAGATGGTTCCAGGCATTGAATCAGCTAGTAAGCCTGGCCCTTACCACACCATTGCT
TTCCAGGACCATGCAGATGCTAGAAACTTCTGCTATATCCTTCAATCACATTATAGGGAACTTGGAGATGCCAGTGTCAGTGTTATTCCCCTCTCTAGTAAGGAATTTTATGAAGAAGCCATGTCAACAGCCTTCAGGGTTACCGTTATAAAAAAGGGTGAGCTTCAACTTCATATTGGGCAGCCTGTCGAGGAAATAGA
AAGCAGAATAATCAAGATTGGGAGTGCTGTATATAGTGAGAAAAATGTTGACAACCAAGCACCTGACATTGATTCCTTTCGTGGCTTTGGCAATAGAACTTTCAATCCTGCATAGCATAGGAAACAGTCAGATTGAAGCTTTATTATGAATTCGATCATGCCAAAGTAATGCTGTTTTTTTTCTTACTATCAACTTTCAT
TCTTTATGTTCCATTTTTATGTATTCTAAATCTACATCCAGGCAAGTATTTTTTTCCCAGATTCTTTCTCACAGGAATGCCAAGAAAGAAAAGCCTTCAAATATATTTTGAAAGGACAGCATGTTCGGCCCATTTTTGCACCATTAAATGGAGTTGCATTCTCTCAAAATAATTTTTGAACTGGGGTTCATGGTCTGAAC
CTCAGTTTTTTAAAGAATACAACTATCTTCTACAATGGAAACCATCGGCAAGTGAGTAGCTCAAAGCCATGAAATAAAGAATGTGTAGCATAACGCATTCATCTATGGACCTTTTCATTTGCACAATAGAATAACTATTCAGAATGGGTAATCTTGTCTCGAATCTGGATAGTACTTGCTTGAGAGTACTGTCTGCTGAG
GCCTTTTAGATCTATAGGATTTTTTTTAAAGCTTAGCATATTTTTTTGAAATTGTCAATATAAGTGCAACTATATGCTGGCCATTCAATCCAGTTTCAATCATCTTGCACAATTTTGGCCAGTTACGGTTAAT
>TRINITY_DN42070_c0_g1_i6 from sample A9 / Example unspliced isoform:TTTGTCTCGTGCCCTTGGAGATTCCAGTCCGAAGACAAGCACGCTATCTTAAAAATCTACGACCACTAAATTGCCTATGGGgtaagaagaacacgtggttatacgtaatcgccattatccttgaggtaatagataagcaattgtttttgaaccttaaaccctagcaaaacctccgtcatctatgttgcatcctgatatca
aataagatttctcccatcactcgcaaactaagtcctaaaattctacctaatcatccttctccacccgcttcagatacaatatataaaatccattccaaatgcattttccaaaatgaattcatggccatggttgtcttcacagAATCCCATTTTGGCAGAGGAACTGCGCTTCGTCTCCAATCTCAGATGGGTTTTTCGCT
CGTTATCTCTGGAGGCTTCAAACTGCCACGAAGACTTGGAAACCCACCTCAGCATCACAGGTGTGTTTTCAAAATTTCCAAGGTAAATATCACTTCAACCCTATCTACAAATTCTGCGATTTTTGCTGAATATAGGCATACTGGAGCTATCAGGCGAAGAAATGCATTGCGTCCAAAACTACTAAAAAGATTGCAGAAAC
CCAAAATTATCATTGAAACCAATGACAATTCAAAGGTAGATGCAGGGAACTCCGAACCCATTGTGGGTAATAATTCCGAGGGGGAAATTGGCGACTCGGAAGCCATTGTAAATGGAGTTGGGGGACCAGAGGCAATTATAAATGGTATCCGGAATACTAGTGATGATTACTTGGAGGTGGTTAATGGGGTTGAAAGTTTC
AGGTTTGGTAATACAGAGGTAGAAATTATGAGCGCAGAACGCAGTGCTAATGCGATTCCGGTTGAGTTCTCACCTGATGGCAGTGCAGAAATGCATATCGGCAGTTCAGAATACAACATTATTGAAACTAAAATGACCACCAATCCAGATCCAGAGTCTGTCACAGGGAAGGATATCGGCCAGAATAGTGCGATAGAAAG
CCAAAAAATGGCCATGGAGATTGGCAATTCAAGATTCATAGCTCAAGCAGGAAAAATGTGGGGTTCATGGAAGAATTGGCATGCACAATACCAGAAGGATATACGGGCTTGGGGTGTTGGGCAGACACCAATTTTTCTGGTTTTTGAAAGTGGTAATGGAGAGGTAAAAGTCTCAATTAATGAAGCTGAGATTTGCAACC
GATGCGTGCCCCAGCCTTTCCTTGCATACCGTCCAGATGAAGTGAAGATCTCGAACTCGCGTACAAAAATAGCACAAGCCAAGCAACTGGCTGAGGATATAGAGGCTGGGTTATTCAAGCCACCAAGAAACAGTACCTTATTTGAGTTTGTAAATACAGAAAAAAATAATTTCGAAAAGTGGGGGGTGTTAGGATCTTTC
TTCTCTCAAGCTAGTTCCGTGATTGATCATCCTTCTCCTGTATTTAAAATTTCTAAAATTGGATTTGTTGTACTGATTAGTTCTGTGCTTGTTTGGGGCGCTTGGAAATATATATTTTACGATGTCCAAGAAGAAATTTACAAGGAAAAACAGAAGATAACAAACACCACAACCAAAAACACAAAGAATGCTGGTGATAT
TTCTGCTTTGAATTCACAAAACAAAAGAGCTGTCAGCAAAGAAGCTGAAGTTAGGAATACAGCATTAGTTATGAACTCTTCTTCTGATGGGAAGCCTCAACTCGACGAGACTGAATTCAGCAAGAAGATTCAGGAGATTCAGGCCATGGCAAGGCAGGCTCGTATGATAGAACAACAAAGTTCCGAGGACTTTTCAGAAC
AGCAGGATGGAGACTACCCCTCAAATTCCAGAACAATGGGAAGAAACACAGATGGTATCAGAGGTTCTCCTTCAAATTTAAATTTAACGATAAGAGAAACGCATGACGATAGAAACACAGATGAATCAAATTTAAATACTCTAGGAAACGGTGCCAAAATAAATACCAAAAAGGAAGTAATTAACCACCTCGAGAGTGCC
CTCTTGTTTCAGCAAACAGGTCTGAAGAAGTTTTCACAGGGCACTGTAGGAAATGATTCGACTCATTTCAGAGAAGACCAGAATAGTGATACAACTTTAAGGGAAACTAGGAAGCCAAAGGTTGATACATTACAATATGGGCAAAGTTCTACAGAAAAGGCTGCTGGAAATGAAATGAAGGAATCAGTGGATGGAAGACG
GGTAAAGAAAGGCTTAGGCAAGAAAATTGGGTTTGGTGCAAACAGGTCTTCTCTGAAAAGTTCGAAGAGAATTAAGCCACGAGTGATTAAATCTGTAAATGAAGCCAGGGAAATAATTGCCCATAGGCGTGGTAAACACGGTGATACATCTAGTGACACTTCAAATCCATATGACAAAAAATATATTTCTGCTGAATCAG
TGGATACAATAAAGAGTACTGCTATAACTGAAGAGGAAATAAGGTCCGACATAAGGGTTGAGAGAGAAAGTAATGACAAACTCAAGCCGACTTTTAGAGAAGCTGAAAATGAATCAGAAGAGAAGGTTACAAGTGGAAAAGCTTTAGAAGATGTGTCATCGAAGCACTTGGAAACTGCTCAAGGTAAGGCAAAGATGGAT
GGTGCAAATAAAAGGGGTACAGGATTGGAGACTCGGCTGGAAATTGATATTCAGGATGGAAACAATGCTTTGTCACAGGAGGCAGAAGAGTTGGAATGGATGAGGGATGAGGTTTTGAGGAAAATCATTTTCAAGGTTCAGGATAATGAAAATGCTGGAAGAGAGCCATTGCACGGTTTAGTCTCCGAGGAAGAACTTCT
CTTTTTCAGAGGTATGGAGAGGAAATTTGAGCGAGAAGGGGAGAGTGTCAAAATTTGGATCAAGGAGAGAGTGGAGAATTTAATGAACGGAAAAGGTAAACCATCTACCTCCCTAAGAGACATATAGTTCCATGTTGAACATGTACCTAACCCAGAGACGTAGAACAATCCACCTATCTGCATATATATTCCCTAAGTAG
CTATCTAGTTTTGGAATACAGTTCTCCCTGTAGCAAATCTGGAAGCTATGAACATGCATTGAGAGATGGGATCTCCCTGAAAACATCAGAAGAATAACACAGGGGGCTTTGACTTTCCTCACAGAGTCACAGTGTTGTGCAGAGAGCTGTTGAAAACCACTGTACTTATTCTAAAAATACTTGCAAGTTGCAATGTCAGC
CATCAGTTTCTAGATTGATAGAACACATGTTAAGATGAATGAAGGAAATCATGCCAAATGCTCGAGCTGCATTTCATAAGTGGTACCTGAGTCTGCATTTATAACTTATCTTTTACTACTGATTTGGTCACTGATGGTCGTTGGTTTAAAATTGTATCAGTGATGACAAACTGAAGCCCTCTTCAATAATGGAACTGAAC
TATTAGCATATTGCTAAGAAACAGTTCATTATGGTATTTCATCCTTTAGAAGATGGATCCAGCTGCTAACAACTTAATGTGGTGAAGGCAGCTAGCTTCAAGAATTGTTACATTTTTTATACCTGCATTTCATTACAGTCAATTCCTGTACCATCATGTCACAAGGGTGCTAATTTGCAGCCAAGTGAGTGTTTTTGTGT
TATAACTATTGTTCATGCCTTCAATCCTAATTGACTTATTAGTTATTTCAGTTCCATATATTGCCTCCAGTACTGGGGAAGTATAGAAAATTGGGGCCATCATTCACGTTTGCAGTAGCTGAAATCATCAGTCGGGTCAAATTTTGCTTAGATTGTGGTTTGAATCTTTCTGTTCCTGAAAGTTGAAAAAGAACAGATCA
GTTTGAGCTGGTTCAAGACGATTTTGTTCAGTAATGGAGATGATCCAAGAACGTTGTAGATATTGTTGACATTCTGGCGGTAGTAACGGCCTCATTACATGTTTATTATTTCCAGTAAGGGGAAAGTAGTTTAAGTGGAAATTGATGTTTTTTGTCCATAATTTCTAAATATACATAACGAC