sp|O48780|KCS11_ARATH ----> 3-ketoacyl-CoA synthase 11

Intron 1 GTTGGGAAAA ... ATGCTTTCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	18.75	13	3	0
A2	23.08	20	6	0
A3	9.09	20	2	0
A4	20	4	1	0
A5	28.95	27	11	2
A6	2.41	81	2	0
A7	4	72	3	0
A8	6.56	57	4	0
A9	7.14	91	7	0
A10	5.33	71	4	1

>TRINITY_DN109251_c0_g1_i2 from sample A5 / Example spliced isoform

CCCAAACGTTCTTCCTACTTGAGTCAAAAAAATGAGCCTATAGCAAAAACAATTTGTTCAATTATTGTCTCTCTTTCAATTTGTATTAGAATAACAGAGGAGGATTCAATAACCCAATGGCCTAATTGGGCTAATTCAGTATAACAATCTAGAAATCCTCTCTTGCGATAGGTTAGATGCTGTCAGATTTTGGAGTCCAT
TGGATCATATGAAGGTGGAAATTAATTAAATTGGTGGACTCCTAGTACCCATCATCATGCAGGTGAAGGAACAATCACTTCTCTCAACTGAGATTGTGGCACAAGGAGTGAAGATATCTGGACCCAATGCTGGATTCCTCACATATTCAGTCAGAGTCCATAGACATTTGCCTGATCTCATGCAGTCTGTGAGTTTGAAA
TATGTGAAGCTGGGTTACCGTTATTTGATTGCCTATGCCATTTATATAATCTCCAGAGTCATTGCACTTGCCTTGTTGTTGATCATTTCGAGGGGCATCCAGCTGGGGTCATGGAGTAATAAGCTGCTACACCCAGGTAGCAGCATTGATATGGTGAGCTTCCTGACCTTATTAATGATATTAACTCTTCTGTATATCTA
CTACATGTCTAGGCCCCGGGTTGTGTACCTGGTTGACTTTGCCTGTTTCAGGCCATCTTATGTATCCAAGGTCTCCAGAGAATTCTTCTTGAAAATGTCCAAGAATACTGGGAAATTTGAGGAGTCAAGTTTGGCCTTCCAGAGAAGAATAGTGGAGAGATCAGGGCTTGGAGATGAAACCCACTTGCCCAAGGCTATCA
CTTCTTTTCCTCCATGTCCCACCTTGAATGAAGCTAGAGCAGAAGCACAAGCTGTGATGTTTGGTGCTCTAGATGAGCTATTCATGAAGTCTAAGGTTAGAGCCAAGGACATAGGCATTCTAGTGGTCAATTGTAGCCTGTTTAACCCCACTCCATCCCTTTCCTCCATGATCATAAACCACTACAAGATGAAAGGCGAT
ATTCTGAGCTTCAACCTGGGAGGAATGGGGTGCAGTGCAGGGATTATTGCAGTGGATTTAGCCAGAGACCTCTTGCAGGTCCATTCCAATACATATGCAATTGTATTGAGCACTGAGAACATAACATTGAATTGGTATACAGGTAATGACAGGTCTATGTTAATGCCCAATTGCCTGTTTCGCATGGGAGGCTCTGCAAT
TCTTCTCTGCAACATAAGAACCGAGAGAAGAAGATCGAGGTACCAACTGAAACACATTGTGAGAACCCATAAAGGAGCCGAGGACGAGAGCTTCCAGTGTATTTCTCAGGGAGAAGATGACACTAACAGCAGGGGTTTATCGATTTCGCGAGATCTGATGGCAGTAGCAGGCCATGCACTGAAGGCCAATATAACAACTC
TGGGCCCCTTGGTTCTTCCATTGCCAGAACAGCTCCTGTTCCTCTGGGCTCTCTTCTGTCGAAAGGTATTGAAGCTGAGGGATGTCAGGCATTATATTCCCAACTTCAAGCTTGCATTCGAACACTTCTGCATTCATGCTGGAGGCAGAGGTGTGCTGGACGAGGTGGAGAAGAATTTGAGGTTGACAAAGTATCATATG
GAGCCTTCCAGGATGACTCTGCATAGATTTGGGAATACTTCCAGTAGCAGCCTATGGTACGAGCTCGCATACTCAGAAGCAAAAGGCAGAGTGAAAAAGGGTGACAGGGTATGGCAGATTGCCTTCGGGTCGGGCTTCAAGTGCAACAGTGCGGTATGGAAGGCCTTGAGAAATGTGGAAGTGCCATTGTACAATCCATG
GCTAGACTGTATTCACAAGTATCCAGTTGAATTGCCATAAATTAATGTCCAACATGCACAGAAGACTGAGGTTTAGATTGAATTTCTGTACAGTTTTTACGTGCATTATATCCTGTTGAAAGTTGAAACAATGAATGGGGATTGTTGGCTGACAACATCACTGGTTATAATTGTAGGAAACACAATAGTCGTGGCCCATG
TCATGAGTCTGTACTGTATATCTCAAGTCCTTTGTTTTGTTTGGTGTTTGTTCTCTTTTTCTGCAATCTTTCTTAAAATTATTGATACGTACAGCATAACAATTTCATTGTTAGTTACCTGTTCACGCATAGAGCATGG

>TRINITY_DN109251_c0_g1_i3 from sample A5 / Example unspliced isoform:

CCCAAACGTTCTTCCTACTTGAGTCAAAAAAATGAGCCTATAGCAAAAACAATTTGTTCAATTATTGTCTCTCTTTCAATTTGTATTAGAATAACAGAGGAGGATTCAATAACCCAATGGCCTAATTGGGCTAATTCAGTATAACAATCTAGAAATCCTCTCTTGCGATAGGTTAGATGCTGTCAGATTTTGGAGTCCAT
TGGATCATATGAAGGTGGAAATTAATTAAATTGGTGGACTCCTAGTACCCATCATCATGCAGGTGAAGGAACAATCACTTCTCTCAACTGAGATTGTGGCACAAGGAGTGAAGATATCTGGACCCAATGCTGGATTCCTCACATATTCAGTCAGAGTCCATAGACATTTGCCTGATCTCATGCAGTCTGTGAGTTTGAAA
TATGTGAAGCTGGGTTACCGTTATTTGATTGCCTATGCCATTTATATAATCTCCAGAGTCATTGCACTTGCCTTGTTGTTGATCATTTCGAGGGGCATCCAGCTGGGGTCATGGAGTAATAAGCTGCTACACCCAGGTAGCAGCATTGATATGGTGAGCTTCCTGACCTTATTAATGATATTAACTCTTCTGTATATCTA
CTACATGTCTAGGCCCCGGGTTGTGTACCTGGTTGACTTTGCCTGTTTCAGGCCATCTTATGTATCCAAGGTCTCCAGAGAATTCTTCTTGAAAATGTCCAAGAATACTGGGAAATTTGAGGAGTCAAGTTTGGCCTTCCAGAGAAGAATAGTGGAGAGATCAGGGCTTGGAGATGAAACCCACTTGCCCAAGGCTATCA
CTTCTTTTCCTCCATGTCCCACCTTGAATGAAGCTAGAGCAGAAGCACAAGCTGTGATGTTTGGTGCTCTAGATGAGCTATTCATGAAGTCTAAGGTTAGAGCCAAGGACATAGGCATTCTAGTGGTCAATTGTAGCCTGTTTAACCCCACTCCATCCCTTTCCTCCATGATCATAAACCACTACAAGATGAAAGGCGAT
ATTCTGAGCTTCAACCTGGGAGGAATGGGGTGCAGTGCAGGGATTATTGCAGTGGATTTAGCCAGAGACCTCTTGCAGGTCCATTCCAATACATATGCAATTGTATTGAGCACTGAGAACATAACATTGAATTGGTATACAGGTAATGACAGGTCTATGTTAATGCCCAATTGCCTGTTTCGCATGGGAGGCTCTGCAAT
TCTTCTCTGCAACATAAGAACCGAGAGAAGAAGATCGAGGTACCAACTGAAACACATTGTGAGAACCCATAAAGGAGCCGAGGACGAGAGCTTCCAGTGTATTTCTCAGGGAGAAGATGACACTAACAGCAGGGGTTTATCGATTTCGCGAGATCTGATGGCAGTAGCAGGCCATGCACTGAAGGCCAATATAACAACTC
TGGGCCCCTTGGTTCTTCCATTGCCAGAACAGCTCCTGTTCCTCTGGGCTCTCTTCTGTCGAAAGGTATTGAAGCTGAGGGATGTCAGGCATTATATTCCCAACTTCAAGCTTGCATTCGAACACTTCTGCATTCATGCTGGAGGCAGAGGTGTGCTGGACGAGGTGGAGAAGAATTTGAGGTTGACAAAGTATCATATG
GAGCCTTCCAGgttgggaaaattctaccataagttttcttcacaaacaaaattctcagaatttttcttttttgcataaacatattgtcaaacattcatacttgatgtacaagattggccaaaacttttagaacggacccttgaaattttccatgcatgctttcagGATGACTCTGCATAGATTTGGGAATACTTCCAGTA
GCAGCCTATGGTACGAGCTCGCATACTCAGAAGCAAAAGG