NA ----> NA
Intron 1 GTAATTGTAA ... ACAGTCACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 77.78 | 1 | 3 | 4 |
| A2 | 37.5 | 5 | 3 | 3 |
| A3 | 51.72 | 7 | 6 | 9 |
| A4 | 45.45 | 3 | 1 | 4 |
| A5 | 71.43 | 1 | 3 | 2 |
| A6 | 46.41 | 9.3 | 4 | 12 |
| A7 | 45.83 | 13 | 12 | 10 |
| A8 | 42.11 | 11 | 2 | 14 |
| A9 | 33.33 | 10 | 5 | 5 |
| A10 | 42.86 | 12 | 5 | 13 |
>TRINITY_DN31888_c0_g1_i3 from sample A6 / Example spliced isoformATTTCAAGAGGAGTCCTAGTTGGAGAACTGATATCAATTGCAAGAGCTGAAACAAAGTAAAAGCCCATTAGTCAGCCAGAGAGGAAGCTCATTGCTCTGCGTGTGAGTGGATGGGTACCAAACTCATAAACCTCTATTCAATACCCCTGCTATGGCTATACTTCAGTCTCTGCATTATGATTATACTCCAGTCTCTGCCC
ACAACACATCTATCATGTTTTTAATGGAATTTCTCAGTAGGGTTTTGAAAAAACAAACTAACCAAGAGACGAAGCACGATCTTCTACAACATTTTCTCTATTCCTCTCACCCACCATTTTCCGTTTCCCAATCGCGATGCATCGCCTTTCTATATATATACATCCGCACAAGGTATAAGGTGGTGTATCTCAAATTTCAA
TGGCTAAGGAAGAAAGTACTCGGTTAATGCTACTTAGACAATCTAGAGCATCAGCGCCTTACCCTGCCACCAGGGGGCTACAAGTAAATTCTTGTGATGCAGGAAGGGATTGGGAAGATGCTATCTGCCCCATATGTAAGAATCCTCCGCATAAGGCTGTTCTTCTCTTATGTTCTTCCTGTGAGGATGGTTGTCGTCCT
TATATCTGCGATACGAGCTATAGGCACTCAAATTGCCTAGATCAATTCATGAAAATGGGTGCAAGGGTGGAACTGAATAGACATGAAAGACCAAACTTGGCTTGTCCACTTTGCAGAGGAGAGGTCAAAGGTTTGACGGTTGTTCAAGGCTCACGAATACATTTGGATACAAAGACAAGGAGTTGTGCACATGAATCCTG
TCCATTTTCCGGGACTTATGCACAGTTGAAAAAGCATGCAAGACTCAATCATCCATTTGCTCGACCAACAGAAGTAGATCCTATTCGGCAGAGAAATTGGCAGAGGTTAGAAGAAGAGAGCAATATTGGTGATGTGCTTAGCAGTATTCAATCAACAATGCCTGGTGCCTTTGTATTTGGGGACTATGTCATTGAGGATG
ACGATATTACTGATGGATTTGATGATAGTGATTTTTCTGCTGATGAAGGTTAACTGAGCTAGCATCAGCACTGAAAATGCTATGCCCATTTGGTCTTACTCAAACACTAATGGGGAGGGGCAATATGTGTAATTGTGATTTCCACAGCAATCAAGAGTCAAGACCCTGGAAAAGCTTTTGTAGAACCTATAAAATCCATG
CTTATATCTGAAATTGGATCAGTGATAAGTGTTTCTCCTAAAATATAACCTGCATTGTTCATATTTTCCTTTCCACCTTTACAGTCATTTTAATGTTGAT
>TRINITY_DN31888_c0_g1_i2 from sample A6 / Example unspliced isoform:ATTTCAAGAGGAGTCCTAGTTGGAGAACTGATATCAATTGCAAGAGCTGAAACAAAGTAAAAGCCCATTAGTCAGCCAGAGAGGAAGCTCATTGCTCTGCGTGTGAGTGGATGGGTACCAAACTCATAAACCTCTATTCAATACCCCTGCTATGGCTATACTTCAGTCTCTGCATTATGATTATACTCCAGTCTCTGCCC
ACAACACATCTATCATGTTTTTAATGGAATTTCTCAGTAGGGTTTTGAAAAAACAAACTAACCAAGAGACGAAGCACGATCTTCTACAACATTTTCTCTATTCCTCTCACCCACCATTTTCCGTTTCCCAATCGCGATGCATCGCCTTTCTATATATATACATCCGCACAAGGTATAAGgtaattgtaacgcctttacaa
cttctgttctgttctagggttacaaggaacaacatacaaggcggaaaggaagaagaacagtcacagGTGGTGTATCTCAAATTTCAATGGCTAAGGAAGAAAGTACTCGGTTAATGCTACTTAGACAATCTAGAGCATCAGCGCCTTACCCTGCCACCAGGGGGCTACAAGTAAATTCTTGTGATGCAGGAAGGGATTGG
GAAGATGCTATCTGCCCCATATGTAAGAATCCTCCGCATAAGGCTGTTCTTCTCTTATGTTCTTCCTGTGAGGATGGTTGTCGTCCTTATATCTGCGATACGAGCTATAGGCACTCAAATTGCCTAGATCAATTCATGAAAATGGGTGCAAGGGTGGAACTGAATAGACATGAAAGACCAAACTTGGCTTGTCCACTTTG
CAGAGGAGAGGTCAAAGGTTTGACGGTTGTTCAAGGCTCACGAATACATTTGGATACAAAGACAAGGAGTTGTGCACATGAATCCTGTCCATTTTCCGGGACTTATGCACAGTTGAAAAAGCATGCAAGACTCAATCATCCATTTGCTCGACCAACAGAAGTAGATCCTATTCGGCAGAGAAATTGGCAGAGGTTAGAAG
AAGAGAGCAATATTGGTGATGTGCTTAGCAGTATTCAATCAACAATGCCTGGTGCCTTTGTATTTGGGGACTATGTCATTGAGGATGACGATATTACTGATGGATTTGATGATAGTGATTTTTCTGCTGATGAAGGTTAACTGAGCTAGCATCAGCACTGAAAATGCTATGCCCATTTGGTCTTACTCAAACACTAATGG
GGAGGGGCAATATGTGTAATTGTGATTTCCACAGCAATCAAGAGTCAAGACCCTGGAAAAGCTTTTGTAGAACCTATAAAATCCATGCTTATATCTGAAATTGGATCAGTGATAAGTGTTTCTCCTAAAATATAACCTGCATTGTTCATATTTTCCTTTCCACCTTTACAGTCATTTTAATGTTGAT