NA ----> NA
Intron 1 GTGGGATGAC ... GGTGTGTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 19.42 | 105 | 26.4 | 9.2 |
| A2 | 10.48 | 52 | 6.6 | 13 |
| A3 | 15.48 | 73 | 14.2 | 4.2 |
| A4 | 3.75 | 30 | 1.2 | 3.8 |
| A5 | 15 | 12 | 2.4 | 2 |
| A6 | 8.66 | 154 | 15.6 | 14.2 |
| A7 | 10.75 | 270 | 35 | 13.8 |
| A8 | 10.4 | 320 | 38.6 | 19 |
| A9 | 11.9 | 347 | 49.6 | 24.2 |
| A10 | 15.82 | 267 | 52.8 | 15 |
>TRINITY_DN125183_c3_g2_i2 from sample A1 / Example spliced isoformGAGAGGTTATCGCGGAACACAAAACAAAAGGAAGTGTGGATTGTTTACGCTTTTTTGACCACTAGGAAGAAGCAGCAGCAGGAGGAGGACCATCTCATCCCATCTCATCCCATAATCACCAATTATAATCCTCCGCAAATCCAAAATTCTGCTGGTGGCTAGATTTCCGGATAAAACCATCGACTCCTCTATTCGGCTGG
GCAAATTGTGGGCTGTATTTGGGTTGGGCAAGGAATGCATTTTTTTTTCTTGAAATAAATGTTGCAGCAAGCATAGAATAGTGGAATTATGGGTTTTCCTTCAGAATTGGAATTGGAAGAATACGTTCAAGAGTGCATAGGTTACAGAGTAGGACTTCCTGTGTGTGGGAAGGCATTGGAAGAGAGAGTAGCTCAAGCGG
AGGAAGGACAGAGAGAGCTTCATGAGAAAGTGGTGTACTTGCATCAACGCCTCCAACAAACGCAACAGAAGCTTGACCGCGCCAGGGCGGAGGCCAATTTGAATGCACAAGCAGTGAGAAAATGCGTGTGGGAGAATGAGAAAGGCGCAGAGCAGTATAGAAAGCTGTGTGACGAATGCACTCGTCTCGAGAAAGAGTGT
GCTCTTTATCTCCATGACAGAGAAGTGTTCATGGAGGCTGCTGACGAGGCAGAGGAAAGAGCCAATGATGCCGAAGAACGCGTCTTACAAGCCGAAAATAAAATACAAGAATTGGTCTCCCAAGTTCAACATCTGAAACAGGGGATGTCACACTCTACAGCGAGCAAGTCAAAGATGGCTGAAGAATTGAATTCACTGAG
ATGTAGAATTTTAGAGCTCGAGTCTGGGAATCACAGCTTGCAGAATGTATCATCCACGATGAAAAAACTTCAAGACGATTGCTTCACAAACCATCAGATTGAGCAACTCGAAAGAGCAAATAGAGAGCTACGAGCACTTTTAGATATTGCAACCTCTAGAAATGAAGAACAATTAAATGAATGCCAAACTTCTATGCAAG
ATGCTAAAGAAGACTACTGGAGGGACCAGCTGCTTGTTAGTTCCCTTGTATCCTCGGCTGTTGCCAAAGGGTTATGCAAGGCCACAGAGCAAGACAAGGAAGAAGCAATAGCCAGAATATATTTGAATCTTGAAGCTGTCATCAAGGAAATGGGATCAGAGTTGCATAGAAGGCTAGAGGCATCCGAGAAGAAAGCTCAA
TTATTGAATGCAGAGGTTCAGTCCCTGAGGCAAGAGAAAAACAATATCAAGAGCAATCTTGAGAAGGCAGAGATTGAGGTGCAATTACTAGACGAGGAGAATAAGGAGCTGAGACTACTTCTACGTGGGAAATATCAGGGGTCAGATGGCTGTGTTATATCTCCTCTTCAAACAAAAGTTAAAGTCTCTTGTAGCCTGAA
GTCACAGTTAAAGTCTCCAGACAATATTTGTGACATGAAGGGAAATGACACAATGCGGCAACCTCTTACACCTCTTGCTCAAAATCCTGCTGAATCAAGGGTGCACCATAGATAGCAGGTGCCATATTGGTTAATGGAAATGGAGCTGTCGTCAAAGCTTGTGTTGTATTCACTAATATTTACTGTCAAGGTGCATCTGT
CAGTTTATAACAGGCACAGTAAAGCTATGGAATGCCTGTTGATGGGAAGTGGCCTTGAAAATTTGAATAAGATAAAATTCATGATTGGTTGTTTTTTGCATATCGAAATTTGTGCATCTGTCAGTTTATAACAGGCACAGTAAAGCTATGGAATGCCTGTTGATGGGAAGTGGCCTTGAAAATTTGAATAAGATAAAATT
CATGATTGGTTGTTATTTGCATATCGAAATTTCATGTGCACGGAAGAATGTAAACATTTTGCACCCCTTCCCTGGCCCCAATTTTTTTGGCTGGAGTTATGTTATTGCAAGCAGTCAGTCATCCATTCTTTTAGTTTGTTATTGATGTAAGGTTATTATTGCTCATTACATGTAACATGCCAGCCACATCATTAACTTCA
GTTTTTTAATTTTGGGATTTATCAGAGACAATTGTGTTCCGTCACAAGTATAGAAGTGCTTTGAAGCCTTGTAAAATCAAACTCTGTCATTCATTGTTTGATTTGTGATATAAAATATGGATTTTTCTTTTAGAAAGCCCATCCATGTGTTGTCAATTTAGTTTGTAGGAAGTTTTGCATAGAACTAAGGTTGTCTAGTT
CTATCTTTGAGCATTGATTTTATTTGGGTTTTCTTTGGGGCCTTCAAATGACGTTGTAC
>TRINITY_DN125183_c3_g2_i4 from sample A1 / Example unspliced isoform:CTGGGGGACCTTCATCTTATCATACTTTTTCATTTTTGTCTATGCCAGGCTAGAGGCATCCGAGAAGAAAGCTCAATTATTGAATGCAGAGGTTCAGTCCCTGAGGCAAGAGAAAAACAATATCAAGAGCAATCTTGAGAAGGCAGAGATTGAGgtgggatgacaacaatgatggcaatgtttgagatgaattctttcag
agatgaaaatattctctttgaaattcttctcttttttaaaaacataggaccgatctgatgcaataataatttctgcagatattttaaatgttgacaattcgaaaatcttcactttctgcacatattttacatgccaacaatttgaaaaattcacattctgcacttattttaaatggcaacaatttgaaaaccttctcttt
ctgacactcattactagctagttaacagcttttaaggtgtgtcagGTGCAATTACTAGACGAGGAGAATAAGGAGCTGAGACTACTTCTACGTGGGAAATATCAGGGGTCAGATGGCTGTGTTATATCTCCTCTTCAAACAAAAGTTAAAGTCTCTTGTAGCCTGAAGTCACAGTTAAAGTCTCCAGACAATATTTGTGA
CATGAAGGGAAATGACACAATGCGGCAACCTCTTACACCTCTTGCTCAAAATCCTGCTGAATCAAGGGTGCACCATAGATAGCAGGTGCCATATTGGTTAATGGAAATGGAGCTGTCGTCAAAGCTTGTGTTGTATTCACTAATATTTACTGTCAAGGTGCATCTGTCAGTTTATAACAGGCACAGTAAAGCTATGGAAT
GCCTGTTGATGGGAAGTGGCCTTGAAAATTTGAATAAGATAAAATTCATGATTGGTTGTTTTTTGCATATCGAAATTTGTGCATCTGTCAGTTTATAACAGGCACAGTAAAGCTATGGAATGCCTGTTGATGGGAAGTGGCCTTGAAAATTTGAATAAGATAAAATTCATGATTGGTTGTTATTTGCATATCGAAATTTC
ATGTGCACGGAAGAATGTAAACATTTTGCACCCCTTCCCTGGCCCCAATTTTTTTGGCTGGAGTTATGTTATTGCAAGCAGTCAGTCATCCATTCTTTTAGTTTGTTATTGATGTAAGGTTATTATTGCTCATTACATGTAACATGCCAGCCACATCATTAACTTCAGTTTTTTAATTTTGGGATTTATCAGAGACAATT
GTGTTCCGTCACAAGTATAGAAGTGCTTTGAAGCCTTGTAAAATCAAACTCTGTCATTCATTGTTTGATTTGTGATATAAAATATGGATTTTTCTTTTAGAAAGCCCATCCATGTGTTGTCAATTTAGTTTGTAGGAAGTTTTGCATAGAACTAAGGTTGTCTAGTTCTATCTTTGAGCATTGATTTTATTTGGGTTTTC
TTTGGGGCCTTCAAATGACGTTGTAC
Intron 2 GTGGGATGAC ... GGTGTGTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 13.93 | 105 | 0 | 17 |
| A2 | 23.53 | 52 | 0 | 16 |
| A3 | 10.98 | 73 | 0 | 9 |
| A4 | 21.05 | 30 | 0 | 8 |
| A5 | 14.29 | 12 | 0 | 2 |
| A6 | 16.76 | 154 | 0 | 31 |
| A7 | 10.89 | 270 | 0 | 33 |
| A8 | 11.85 | 320 | 2 | 43 |
| A9 | 11.93 | 347 | 2 | 47 |
| A10 | 11 | 267 | 1 | 33 |
>TRINITY_DN38040_c0_g1_i1 from sample A10 / Example spliced isoformGTGAAAAACGAGGAAGGCGCCTCAGGTCAAGCAAAGGATCGAGAGGTTATCGCGGAACACAAAACAAAAGGAAGTGTGGATTGTTTACGCTTTTTTGACCACTAGGAAGAAGCAGCAGCAGGAGGAGGACCATCTCATCCCATCTCATCCCATAATCACCAATTATAATCCTCCGCAAATCCAAAATTCTGCTGGTGGCT
AGATTTCCGGATAAAACCATCGACTCCTCTATTCGGCTGGGCAAATTGTGGGCTGTATTTGGGTTGGGCAAGGAATGCATTTTTTTTTCTTGAAATAAATGTTGCAGCAAGCATAGAATAGTGGAATTATGGGTTTTCCTTCAGAATTGGAATTGGAAGAATACGTTCAAGAGTGCATAGGTTACAGAGTAGGACTTCCT
GTGTGTGGGAAGGCATTGGAAGAGAGAGTAGCTCAAGCGGAGGAAGGACAGAGAGAGCTTCATGAGAAAGTGGTGTACTTGCATCAACGCCTCCAACAAACGCAACAGAAGCTTGACCGCGCCAGGGCGGAGGCCAATTTGAATGCACAAGCAGTGAGAAAATGCGTGTGGGAGAATGAGAAAGGCGCAGAGCAGTATAG
AAAGCTGTGTGACGAATGCACTCGTCTCGAGAAAGAGTGTGCTCTTTATCTCCATGACAGAGAAGTGTTCATGGAGGCTGCTGACGAGGCAGAGGAAAGAGCCAATGATGCCGAAGAACGCGTCTTACAAGCCGAAAATAAAATACAAGAATTGGTCTCCCAAGTTCAACATCTGAAACAGGGGATGTCACACTCTACAG
CGAGCAAGTCAAAGATGGCTGAAGAATTGAATTCACTGAGATGTAGAATTTTAGAGCTCGAGTCTGGGAATCACAGCTTGCAGAATGTATCATCCACGATGAAAAAACTTCAAGACGATTGCTTCACAAACCATCAGATTGAGCAACTCGAAAGAGCAAATAGAGAGCTACGAGCACTTTTAGATATTGCAACCTCTAGA
AATGAAGAACAATTAAATGAATGCCAAACTTCTATGCAAGATGCTAAAGAAGACTACTGGAGGGACCAGCTGCTTGTTAGTTCCCTTGTATCCTCGGCTGTTGCCAAAGGGTTATGCAAGGCCACAGAGCAAGACAAGGAAGAAGCAATAGCCAGAATATATTTGAATCTTGAAGCTGTCATCAAGGAAATGGGATCAGA
GTTGCATAGAAGGCTAGAGGCATCCGAGAAGAAAGCTCAATTATTGAATGCAGAGGTTCAGTCCCTGAGGCAAGAGAAAAACAATATCAAGAGCAATCTTGAGAAGGCAGAGATTGAGGTGCAATTACTAGACGAGGAGAATAAGGAGCTGAGACTACTTCTACGTGGGAAATATCAGGGGTCAGATGGCTGTGTTATAT
CTCCTCTTCAAACAAAAGTTAAAGTCTCTTGTAGCCTGAAGTCACAGTTAAAGTCTCCAGACAATATTTGTGACATGAAGGGAAATGACACAATGCGGCAACCTCTTACACCTCTTGCTCAAAATCCTGCTGAATCAAGGGTGCACCATAGATAGCAGGTGCCATATTGGTTAATGGAAATGGAGCTGTCGTCAAAGCTT
GTGTTGTATTCACTAATATTTACTGTCAAGGTGCATCTGTCAGTTTATAACAGGCACAGTAAAGCTATGGAATGCCTGTTGATGGGAAGTGGCCTTGAAAATTTGAATAAGATAAAATTCATGATTGGTTGTTTTTTGCATATCGAAATTTGTGCATCTGTCAGTTTATAACAGGCACAGTAAAGCTATGGAATGCCTGT
TGATGGGAAGTGGCCTTGAAAATTTGAATAAGATAAAATTCATGATTGGTTGTTATTTGCATATCGAAATTTCATGTGCACGGAAGAATGTAAACATTTTGCACCCCTTCCCTGGCCCCAATTTTTTTGGCTGGAGTTATGTTATTGCAAGCAGTCAGTCATCCATTCTTTTAGTTTGTTATTGATGTAAGGTTATTATT
GCTCATTACATGTAACATGCCAGCCACATCATTAACTTCAGTTTTTTAATTTTGGGATTTATCAGAGACAATTGTGTTCCGTCACAAGTATAGAAGTGCTTTGAAGCCTTGTAAAATCAAACTCTGTCATTCATTGTTTGATTTGTGATATAAAATATGGATTTTTCTTTTAGAAAGCCG
>TRINITY_DN38040_c0_g1_i2 from sample A10 / Example unspliced isoform:TTGAGAAGGCAGAGATTGAGgtgggatgacaacaatgatggcaatgtttgagatgaattctttcagagatgaaaatattctctttgaaattcttctctttttttaaaaacataggaccgatctgatgcaataataatttctgcagatattttaaatgttgacaattcgaaaatcttcactttctgcacatattttacatg
ccaacaatttgaaaaattcacattctgcacttattttaaatggcaacaatttgaaaaccttctctttctgacactcattactagctagttaacagcttttaaggtgtgtcagGTGCAATTACTAGACGAGGAGAATAAGGAGCTGAGACTACTTCTACGTGGGAAATATCAGGGGTCAGATGGCTGTGTTATATCTCCTC
TTCAAACAAAAGTTAAAGTCTCTTGTAGCCTGAAGTCACAGTTAAAGTCTCCAGACAATATTTGTGACATGAAGGGAAATGACACAATGCGGCAACCTCTTACACCTCTTGCTCAAAATCCTGCTGAATCAAGGGTGCACCATAGATAGCAGGTGCCATATTGGTTAATGGAAATGGAGCTGTCGTCAAAGCTTGTGTTG
TATTCACTAATATTTACTGTCAAGGTGCATCTGTCAGTTTATAACAGGCACAGTAAAGCTATGGAATGCCTGTTGATGGGAAGTGGCCTTGAAAATTTGAATAAGATAAAATTCATGATTGGTTGTTTTTTGCATATCGAAATTTGTGCATCTGTCAGTTTATAACAGGCACAGTAAAGCTATGGAATGCCTGTTGATGG
GAAGTGGCCTTGAAAATTTGAATAAGATAAAATTCATGATTGGTTGTTATTTGCATATCGAAATTTCATGTGCACGGAAGAATGTAAACATTTTGCACCCCTTCCCTGGCCCCAATTTTTTTGGCTGGAGTTATGTTATTGCAAGCAGTCAGTCATCCATTCTTTTAGTTTGTTATTGATGTAAGGTTATTATTGCTCAT
TACATGTAACATGCCAGCCACATCATTAACTTCAGTTTTTTAATTTTGGGATTTATCAGAGACAATTGTGTTCCGTCACAAGTATAGAAGTGCTTTGAAGCCTTGTAAAATCAAACTCTGTCATTCATTGTTTGATTTGTGATATAAAATATGGATTTTTCTTTTAGAAAGCCG
Intron 3 GTAAGTAAAG ... TAATTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 20.89 | 125 | 2 | 33 |
| A2 | 17.98 | 73 | 8 | 16 |
| A3 | 27.48 | 95 | 0 | 36 |
| A4 | 21.95 | 64 | 1 | 18 |
| A5 | 26.67 | 22 | 2 | 8 |
| A6 | 25.58 | 192 | 4 | 66 |
| A7 | 23.33 | 424 | 8 | 129 |
| A8 | 22.37 | 413 | 4 | 119 |
| A9 | 24.62 | 398 | 6 | 130 |
| A10 | 19.62 | 336 | 0 | 82 |
>TRINITY_DN35837_c0_g1_i1 from sample A9 / Example spliced isoformGGCGCCTCAGGTCAAGCAAAGGATCGAGAGGTTATCGCGGAACACAAAACAAAAGGAAGTGTGGATTGTTTACGCTTTTTTGACCACTAGGAAGAAGCAGCAGCAGGAGGAGGACCATCTCATCCCATCTCATCCCATAATCACCAATTATAATCCTCCGCAAATCCAAAATTCTGCTGGTGGCTAGATTTCCGGATAAA
ACCATCGACTCCTCTATTCGGCTGGGCAAATTGTGGGCTGTATTTGGGTTGGGCAAGGAATGCATTTTTTTTTCTTGAAATAAATGTTGCAGCAAGCATAGAATAGTGGAATTATGGGTTTTCCTTCAGAATTGGAATTGGAAGAATACGTTCAAGAGTGCATAGGTTACAGAGTAGGACTTCCTGTGTGTGGGAAGGCA
TTGGAAGAGAGAGTAGCTCAAGCGGAGGAAGGACAGAGAGAGCTTCATGAGAAAGTGGTGTACTTGCATCAACGCCTCCAACAAACGCAACAGAAGCTTGACCGCGCCAGGGCGGAGGCCAATTTGAATGCACAAGCAGTGAGAAAATGCGTGTGGGAGAATGAGAAAGGCGCAGAGCAGTATAGAAAGCTGTGTGACGA
ATGCACTCGTCTCGAGAAAGAGTGTGCTCTTTATCTCCATGACAGAGAAGTGTTCATGGAGGCTGCTGACGAGGCAGAGGAAAGAGCCAATGATGCCGAAGAACGCGTCTTACAAGCCGAAAATAAAATACAAGAATTGGTCTCCCAAGTTCAACATCTGAAACAGGGGATGTCACACTCTACAGCGAGCAAGTCAAAGA
TGGCTGAAGAATTGAATTCACTGAGATGTAGAATTTTAGAGCTCGAGTCTGGGAATCACAGCTTGCAGAATGTATCATCCACGATGAAAAAACTTCAAGACGATTGCTTCACAAACCATCAGATTGAGCAACTCGAAAGAGCAAATAGAGAGCTACGAGCACTTTTAGATATTGCAACCTCTAGAAATGAAGAACAATTA
AATGAATGCCAAACTTCTATGCAAGATGCTAAAGAAGACTACTGGAGGGACCAGCTGCTTGTTAGTTCCCTTGTATCCTCGGCTGTTGCCAAAGGGTTATGCAAGGCCACAGAGCAAGACAAGGAAGAAGCAATAGCCAGAATATATTTGAATCTTGAAGCTGTCATCAAGGAAATGGGATCAGAGTTGCATAGAAGGCT
AGAGGCATCCGAGAAGAAAGCTCAATTATTGAATGCAGAGGTTCAGTCCCTGAGGCAAGAGAAAAACAATATCAAGAGCAATCTTGAGAAGGCAGAGATTGAGGTGCAATTACTAGACGAGGAGAATAAGGAGCTGAGACTACTTCTACGTGGGAAATATCAGGGGTCAGATGGCTGTGTTATATCTCCTCTTCAAACAA
AAGTTAAAGTCTCTTGTAGCCTGAAGTCACAGTTAAAGTCTCCAGACAATATTTGTGACATGAAGGGAAATGACACAATGCGGCAACCTCTTACACCTCTTGCTCAAAATCCTGCTGAATCAAGGGTGCACCATAGATAGCAGGTGCCATATTGGTTAATGGAAATGGAGCTGTCGTCAAAGCTTGTGTTGTATTCACTA
ATATTTACTGTCAAGGTGCATCTGTCAGTTTATAACAGGCACAGTAAAGCTATGGAATGCCTGTTGATGGGAAGTGGCCTTGAAAATTTGAATAAGATAAAATTCATGATTGGTTGTTTTTTGCATATCGAAATTTGTGCATCTGTCAGTTTATAACAGGCACAGTAAAGCTATGGAATGCCTGTTGATGGGAAGTGGCC
TTGAAAATTTGAATAAGATAAAATTCATGATTGGTTGTTATTTGCATATCGAAATTTCATGTGCACGGAAGAATGTAAACATTTTGCACCCCTTCCCTGGCCCCAATTTTTTTGGCTGGAGTTATGTTATTGCAAGCAGTCAGTCATCCATTCTTTTAGTTTGTTATTGATGTAAGGTTATTATTGCTCATTACATGTAA
CATGCCAGCCACATCATTAACTTCAGTTTTTTAATTTTGGGATTTATCAGAGACAATTGTGTTCCGTCACAAGTATAGAAGTGCTTTGAAGCCTTGTAAAATCAAACTCTGTCATTCATTGTTTGATTTGTGATATAAAATATGGATTTTTCTTTTAGAAAGCCCATCCATGTGTTGTCAATTTAGTTTGTAGGAAGTTT
TGCATAGAACTAAGGTTGTCTAGTTCTATCTTTGAGCATTGATTTTTTTTGGGTTTTCTTTGGGA
>TRINITY_DN35837_c0_g1_i2 from sample A9 / Example unspliced isoform:GGCGCCTCAGGTCAAGCAAAGGATCGAGAGGTTATCGCGGAACACAAAACAAAAGGAAGTGTGGATTGTTTACGCTTTTTTGACCACTAGGAAGAAGCAGCAGCAGGAGGAGGACCATCTCATCCCATCTCATCCCATAATCACCAATTATAATCCTCCGCAAATCCAAAATTCTGCTGGTGGCTAGATTTCCGGATAAA
ACCATCGACTCCTCTATTCGGCTGGGCAAATTGTGGGCTGTATTTGGGTTGGGCAAGGAATGCATTTTTTTTTCTTGAAATAAATGTTGCAGCAAGCATAGAATAGTGGAATTATGGGTTTTCCTTCAGAATTGGAATTGGAAGAATACGTTCAAGAGTGCATAGGTTACAGAGTAGGACTTCCTGTGTGTGGGAAGGCA
TTGGAAGAGAGAGTAGCTCAAGCGGAGGAAGGACAGAGAGAGCTTCATGAGAAAGTGGTGTACTTGCATCAACGCCTCCAACAAACGCAACAGAAGCTTGACCGCGCCAGGGCGGAGGCCAATTTGAATGCACAAGCAGTGAGAAAATGCGTGTGGGAGAATGAGAAAGGCGCAGAGCAGTATAGAAAGCTGTGTGACGA
ATGCACTCGTCTCGAGAAAGAGTGTGCTCTTTATCTCCATGACAGAGAAGTGTTCATGGAGGCTGCTGACGAGGCAGAGGAAAGAGCCAATGATGCCGAAGAACGCGTCTTACAAGCCGAAAATAAAATACAAGAATTGGTCTCCCAAGTTCAACATCTGAAACAGGGGATGTCACACTCTACAGCGAGCAAGTCAAAGA
TGGCTGAAGAATTGAATTCACTGAGATGTAGAATTTTAGAGCTCGAGTCTGGGAATCACAGCTTGCAGAATGTATCATCCACGATGAAAAAACTTCAAGACGATTGCTTCACAAACCATCAGATTGAGCAACTCGAAAGAGCAAATAGAGAGCTACGAGCACTTTTAGATATTGCAACCTCTAGAAATGAAGAACAATTA
AATGAATGCCAAACTTCTATGCAAGATGCTAAAGAAGACTACTGGAGGGACCAGCTGCTTGTTAGTTCCCTTGTATCCTCGGCTGTTGCCAAAGGGTTATGCAAGGCCACAGAGCAAGACAAGGAAGAAGCAATAGCCAGAATATATTTGAATCTTGAAGCTGTCATCAAGGAAATGGGATCAGAGTTGCATAGAAGGCT
AGAGGCATCCGAGAAGAAAGCTCAATTATTGAATGCAGAGGTTCAGTCCCTGAGGCAAGAGAAAAACAATATCAAGAGCAATCTTGAGAAGGCAGAGATTGAGGTGGGATGACAACAATGATGGCAATGTTTGAGATGAATTCTTTCAGAGATGAAAATATTCTCTTTGAAATTCTTCTCTTTTTTAAAAACATAGGACC
GATCTGATGCAATAATAATTTCTGCAGATATTTTAAATGTTGACAATTCGAAAATCTTCACTTTCTGCACATATTTTACATGCCAACAATTTGAAAAATTCACATTCTGCACTTATTTTAAATGGCAACAATTTGAAAACCTTCTCTTTCTGACACTCATTACTAGCTAGTTAACAGCTTTTAAGGTGTGTCAGGTGCAA
TTACTAGACGAGGAGAATAAGGAGCTGAGACTACTTCTACGTGGGAAATATCAGGGGTCAGATGGCTGTGTTATATCTCCTCTTCAAACAAAAgtaagtaaagcagtaccatttctggccatacttagtatgacccaatttgagaactaagaatatggttctatataattcaaaagtttaaatctttcaatcccttctga
aaagggttgttttaccattttactagagaatttaatttgaaatcagcagttaatttaaaatgaaagcaacaatgattgtacgctgtcaaacaacatcattccatagagtgtttcaattttatgggttacaatccttgctcagctgtagacagaccagcagaaagaatacacaaattattataatatttttcattttcctt
gtttaataatattttccttattcgccaaattttataacagcctctatagaacattcatacttgtggaccattcgccttatttatattttgttcccaaatattatttttggaaaggcttgccagcttttgatatgtctgaatgtcattgcataagttctagtggccatgttagccatccctaacatatattaagttccatc
ctccatgaatctattcatataacattttatgtatttatgaaaagtgtgatttttggaagaacttatttgacttttttgggcttggtgatgcttgggaattggattaatttgcagGTTAAAGTCTCTTGTAGCCTGAAGTCACAGTTAAAGTCTCCAGACAATATTTGTGACATGAAGGGAAATGACACAATGCGGCAACC
TCTTACACCTCTTGCTCAAAATCCTGCTGAATCAAGGGTGCACCATAGATAGCAGGTGCCATATTGGTTAATGGAAATGGAGCTGTCGTCAAAGCTTGTGTTGTATTCACTAATATTTACTGTCAAGGTGCATCTGTCAGTTTATAACAGGCACAGTAAAGCTATGGAATGCCTGTTGATGGGAAGTGGCCTTGAAAATT
TGAATAAGATAAAATTCATGATTGGTTGTTTTTTGCATATCGAAATTTGTGCATCTGTCAGTTTATAACAGGCACAGTAAAGCTATGGAATGCCTGTTGATGGGAAGTGGCCTTGAAAATTTGAATAAGATAAAATTCATGATTGGTTGTTATTTGCATATCGAAATTTCATGTGCACGGAAGAATGTAAACATTTTGCA
CCCCTTCCCTGGCCCCAATTTTTTTGGCTGGAGTTATGTTATTGCAAGCAGTCAGTCATCCATTCTTTTAGTTTGTTATTGATGTAAGGTTATTATTGCTCATTACATGTAACATGCCAGCCACATCATTAACTTCAGTTTTTTAATTTTGGGATTTATCAGAGACAATTGTGTTCCGTCACAAGTATAGAAGTGCTTTG
AAGCCTTGTAAAATCAAACTCTGTCATTCATTGTTTGATTTGTGATATAAAATATGGATTTTTCTTTTAGAAAGCCCATCCATGTGTTGTCAATTTAGTTTGTAGGAAGTTTTGCATAGAACTAAGGTTGTCTAGTTCTATCTTTGAGCATTGATTTTTTTTGGGTTTTCTTTGGGA
Intron 4 GTATCAAAGC ... TAGAAAACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 24.29 | 53 | 20 | 14 |
| A2 | 19.4 | 54 | 11 | 15 |
| A3 | 18.92 | 75 | 17 | 18 |
| A4 | 26.32 | 49 | 13 | 22 |
| A5 | 20.93 | 17 | 1 | 8 |
| A6 | 22.68 | 75 | 30 | 14 |
| A7 | 16.3 | 190 | 43 | 31 |
| A8 | 21.21 | 156 | 38 | 46 |
| A9 | 18.75 | 247 | 49 | 65 |
| A10 | 20.25 | 193 | 44 | 54 |
>TRINITY_DN125183_c3_g2_i2 from sample A1 / Example spliced isoformGAGAGGTTATCGCGGAACACAAAACAAAAGGAAGTGTGGATTGTTTACGCTTTTTTGACCACTAGGAAGAAGCAGCAGCAGGAGGAGGACCATCTCATCCCATCTCATCCCATAATCACCAATTATAATCCTCCGCAAATCCAAAATTCTGCTGGTGGCTAGATTTCCGGATAAAACCATCGACTCCTCTATTCGGCTGG
GCAAATTGTGGGCTGTATTTGGGTTGGGCAAGGAATGCATTTTTTTTTCTTGAAATAAATGTTGCAGCAAGCATAGAATAGTGGAATTATGGGTTTTCCTTCAGAATTGGAATTGGAAGAATACGTTCAAGAGTGCATAGGTTACAGAGTAGGACTTCCTGTGTGTGGGAAGGCATTGGAAGAGAGAGTAGCTCAAGCGG
AGGAAGGACAGAGAGAGCTTCATGAGAAAGTGGTGTACTTGCATCAACGCCTCCAACAAACGCAACAGAAGCTTGACCGCGCCAGGGCGGAGGCCAATTTGAATGCACAAGCAGTGAGAAAATGCGTGTGGGAGAATGAGAAAGGCGCAGAGCAGTATAGAAAGCTGTGTGACGAATGCACTCGTCTCGAGAAAGAGTGT
GCTCTTTATCTCCATGACAGAGAAGTGTTCATGGAGGCTGCTGACGAGGCAGAGGAAAGAGCCAATGATGCCGAAGAACGCGTCTTACAAGCCGAAAATAAAATACAAGAATTGGTCTCCCAAGTTCAACATCTGAAACAGGGGATGTCACACTCTACAGCGAGCAAGTCAAAGATGGCTGAAGAATTGAATTCACTGAG
ATGTAGAATTTTAGAGCTCGAGTCTGGGAATCACAGCTTGCAGAATGTATCATCCACGATGAAAAAACTTCAAGACGATTGCTTCACAAACCATCAGATTGAGCAACTCGAAAGAGCAAATAGAGAGCTACGAGCACTTTTAGATATTGCAACCTCTAGAAATGAAGAACAATTAAATGAATGCCAAACTTCTATGCAAG
ATGCTAAAGAAGACTACTGGAGGGACCAGCTGCTTGTTAGTTCCCTTGTATCCTCGGCTGTTGCCAAAGGGTTATGCAAGGCCACAGAGCAAGACAAGGAAGAAGCAATAGCCAGAATATATTTGAATCTTGAAGCTGTCATCAAGGAAATGGGATCAGAGTTGCATAGAAGGCTAGAGGCATCCGAGAAGAAAGCTCAA
TTATTGAATGCAGAGGTTCAGTCCCTGAGGCAAGAGAAAAACAATATCAAGAGCAATCTTGAGAAGGCAGAGATTGAGGTGCAATTACTAGACGAGGAGAATAAGGAGCTGAGACTACTTCTACGTGGGAAATATCAGGGGTCAGATGGCTGTGTTATATCTCCTCTTCAAACAAAAGTTAAAGTCTCTTGTAGCCTGAA
GTCACAGTTAAAGTCTCCAGACAATATTTGTGACATGAAGGGAAATGACACAATGCGGCAACCTCTTACACCTCTTGCTCAAAATCCTGCTGAATCAAGGGTGCACCATAGATAGCAGGTGCCATATTGGTTAATGGAAATGGAGCTGTCGTCAAAGCTTGTGTTGTATTCACTAATATTTACTGTCAAGGTGCATCTGT
CAGTTTATAACAGGCACAGTAAAGCTATGGAATGCCTGTTGATGGGAAGTGGCCTTGAAAATTTGAATAAGATAAAATTCATGATTGGTTGTTTTTTGCATATCGAAATTTGTGCATCTGTCAGTTTATAACAGGCACAGTAAAGCTATGGAATGCCTGTTGATGGGAAGTGGCCTTGAAAATTTGAATAAGATAAAATT
CATGATTGGTTGTTATTTGCATATCGAAATTTCATGTGCACGGAAGAATGTAAACATTTTGCACCCCTTCCCTGGCCCCAATTTTTTTGGCTGGAGTTATGTTATTGCAAGCAGTCAGTCATCCATTCTTTTAGTTTGTTATTGATGTAAGGTTATTATTGCTCATTACATGTAACATGCCAGCCACATCATTAACTTCA
GTTTTTTAATTTTGGGATTTATCAGAGACAATTGTGTTCCGTCACAAGTATAGAAGTGCTTTGAAGCCTTGTAAAATCAAACTCTGTCATTCATTGTTTGATTTGTGATATAAAATATGGATTTTTCTTTTAGAAAGCCCATCCATGTGTTGTCAATTTAGTTTGTAGGAAGTTTTGCATAGAACTAAGGTTGTCTAGTT
CTATCTTTGAGCATTGATTTTATTTGGGTTTTCTTTGGGGCCTTCAAATGACGTTGTAC
>TRINITY_DN125183_c3_g2_i3 from sample A1 / Example unspliced isoform:GAGAGGTTATCGCGGAACACAAAACAAAAGGAAGTGTGGATTGTTTACGCTTTTTTGACCACTAGGAAGAAGCAGCAGCAGGAGGAGGACCATCTCATCCCATCTCATCCCATAATCACCAATTATAATCCTCCGCAAATCCAAAATTCTGCTGGTGGCTAGATTTCCGGATAAAACCATCGACTCCTCTATTCGGCTGG
GCAAATTGTGGGCTGTATTTGGGTTGGGCAAGGAATGCATTTTTTTTTCTTGAAATAAATGTTGCAGCAAGCATAGAATAGTGGAATTATGGGTTTTCCTTCAGAATTGGAATTGGAAGAATACGTTCAAGAGTGCATAGGTTACAGAGTAGGACTTCCTGTGTGTGGGAAGGCATTGGAAGAGAGAGTAGCTCAAGCGG
AGGAAGGACAGAGAGAGCTTCATGAGAAAGTGGTGTACTTGCATCAACGCCTCCAACAAACGCAACAGAAGCTTGACCGCGCCAGGGCGGAGGCCAATTTGAATGCACAAGCAGTGAGAAAATGCGTGTGGGAGAATGAGAAAGGCGCAGAGCAGTATAGAAAGCTGTGTGACGAATGCACTCGTCTCGAGAAAGAGTGT
GCTCTTTATCTCCATGACAGAGAAGTGTTCATGGAGGCTGCTGACGAGGCAGAGGAAAGAGCCAATGATGCCGAAGAACGCGTCTTACAAGCCGAAAATAAAATACAAGAATTGGTCTCCCAAGTTCAACATCTGAAACAGGGGATGTCACACTCTACAGCGAGCAAGTCAAAGATGGCTGAAGAATTGAATTCACTGAG
ATGTAGAATTTTAGAGCTCGAGTCTGGGAATCACAGgtatcaaagccactggtttcatttcaagtgtgttggtgtgcatttgttatagaaatctactaaatcctatatgctggatatgtccatagtggagaacttgacctttagagacacctgtttctatatagcctacctatctatacaggtgaaagggtggcattttc
aaataaatggtaaaatggtgaattcacatggattcatcccattcacaaacaacatatgcctccaattcctatgccaattatagatactttagaactccacgccttctatcttctttctgtgttacctttgaagcaaaatgttacctttgaagcaaaatctagaaataaaacggaatgaacataaaatagctttttttatt
acccaagtataacagcagactttgtaatggtgctggaggttatatatgctttcctgctatgttgtatgagtttcaggacagtgtacatactttttctcaaagtgaaaccaacattacattccttttctctctggatttgattatgccattcagtctagagtttcattcttaacattttggttcagaatcatttcctggta
tctaacacctcaatagaaaacagCTTGCAGAATGTATCATCCACGATGAAAAAACTTCAAGACGATTGCTTCACAAACCATCAGATTGAGCAACTCGAAAGAGCAAATAGAGAGCTACGAGCACTTTTAGATATTGCAACCTCTGTAAGTCTTCGTTTAGGAACCTTATTTGGGAGATAGACACAAAAGATATTGTTTCA
TTTTTTTAGATAGACTCGAAATTATTTATTGAGTTTTTCTTCCATCTAAGTCCAATTTGTTTTTAATGTTGCAC
Intron 5 GTATGAATAA ... TGGCCTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 27.27 | 96 | 36 | 8 |
| A2 | 15.38 | 55 | 10 | 2 |
| A3 | 30.83 | 83 | 37 | 3 |
| A4 | 25.96 | 77 | 27 | 7 |
| A5 | 19.57 | 37 | 9 | 5 |
| A6 | 23.64 | 42 | 13 | 3 |
| A7 | 16.18 | 145 | 28 | 8 |
| A8 | 14.96 | 108 | 19 | 13 |
| A9 | 20.08 | 211 | 53 | 21 |
| A10 | 23.37 | 200 | 61 | 15 |
>TRINITY_DN125183_c3_g2_i3 from sample A1 / Example spliced isoformGAGAGGTTATCGCGGAACACAAAACAAAAGGAAGTGTGGATTGTTTACGCTTTTTTGACCACTAGGAAGAAGCAGCAGCAGGAGGAGGACCATCTCATCCCATCTCATCCCATAATCACCAATTATAATCCTCCGCAAATCCAAAATTCTGCTGGTGGCTAGATTTCCGGATAAAACCATCGACTCCTCTATTCGGCTGG
GCAAATTGTGGGCTGTATTTGGGTTGGGCAAGGAATGCATTTTTTTTTCTTGAAATAAATGTTGCAGCAAGCATAGAATAGTGGAATTATGGGTTTTCCTTCAGAATTGGAATTGGAAGAATACGTTCAAGAGTGCATAGGTTACAGAGTAGGACTTCCTGTGTGTGGGAAGGCATTGGAAGAGAGAGTAGCTCAAGCGG
AGGAAGGACAGAGAGAGCTTCATGAGAAAGTGGTGTACTTGCATCAACGCCTCCAACAAACGCAACAGAAGCTTGACCGCGCCAGGGCGGAGGCCAATTTGAATGCACAAGCAGTGAGAAAATGCGTGTGGGAGAATGAGAAAGGCGCAGAGCAGTATAGAAAGCTGTGTGACGAATGCACTCGTCTCGAGAAAGAGTGT
GCTCTTTATCTCCATGACAGAGAAGTGTTCATGGAGGCTGCTGACGAGGCAGAGGAAAGAGCCAATGATGCCGAAGAACGCGTCTTACAAGCCGAAAATAAAATACAAGAATTGGTCTCCCAAGTTCAACATCTGAAACAGGGGATGTCACACTCTACAGCGAGCAAGTCAAAGATGGCTGAAGAATTGAATTCACTGAG
ATGTAGAATTTTAGAGCTCGAGTCTGGGAATCACAGGTATCAAAGCCACTGGTTTCATTTCAAGTGTGTTGGTGTGCATTTGTTATAGAAATCTACTAAATCCTATATGCTGGATATGTCCATAGTGGAGAACTTGACCTTTAGAGACACCTGTTTCTATATAGCCTACCTATCTATACAGGTGAAAGGGTGGCATTTTC
AAATAAATGGTAAAATGGTGAATTCACATGGATTCATCCCATTCACAAACAACATATGCCTCCAATTCCTATGCCAATTATAGATACTTTAGAACTCCACGCCTTCTATCTTCTTTCTGTGTTACCTTTGAAGCAAAATGTTACCTTTGAAGCAAAATCTAGAAATAAAACGGAATGAACATAAAATAGCTTTTTTTATT
ACCCAAGTATAACAGCAGACTTTGTAATGGTGCTGGAGGTTATATATGCTTTCCTGCTATGTTGTATGAGTTTCAGGACAGTGTACATACTTTTTCTCAAAGTGAAACCAACATTACATTCCTTTTCTCTCTGGATTTGATTATGCCATTCAGTCTAGAGTTTCATTCTTAACATTTTGGTTCAGAATCATTTCCTGGTA
TCTAACACCTCAATAGAAAACAGCTTGCAGAATGTATCATCCACGATGAAAAAACTTCAAGACGATTGCTTCACAAACCATCAGATTGAGCAACTCGAAAGAGCAAATAGAGAGCTACGAGCACTTTTAGATATTGCAACCTCTGTAAGTCTTCGTTTAGGAACCTTATTTGGGAGATAGACACAAAAGATATTGTTTCA
TTTTTTTAGATAGACTCGAAATTATTTATTGAGTTTTTCTTCCATCTAAGTCCAATTTGTTTTTAATGTTGCAC
>TRINITY_DN125183_c3_g2_i5 from sample A1 / Example unspliced isoform:GAGAGGTTATCGCGGAACACAAAACAAAAGGAAGTGTGGATTGTTTACGCTTTTTTGACCACTAGGAAGAAGCAGCAGCAGGAGGAGGACCATCTCATCCCATCTCATCCCATAATCACCAATTATAATCCTCCGCAAATCCAAAATTCTGCTGGTGGCTAGATTTCCGGATAAAACCATCGACTCCTCTATTCGGCTGG
GCAAATTGTGGGCTGTATTTGGGTTGGGCAAGGAATGCATTTTTTTTTCTTGAAATAAATGTTGCAGCAAGCATAGAATAGTGGAATTATGGGTTTTCCTTCAGAATTGGAATTGGAAGAATACGTTCAAGAGTGCATAGGTTACAGAGTAGGACTTCCTGTGTGTGGGAAGGCATTGGAAGAGAGAGTAGCTCAAGCGG
AGGAAGGACAGAGAGAGCTTCATGAGAAAGTGGTGTACTTGCATCAACGCCTCCAACAAACGCAACAGAAGCTTGACCGCGCCAGGgtatgaataacgttaattatggtttagggttttaattatttacatgaataaaataattattattgttttggcctgcagGCGGAGGCCAATTTGAATGCACAAGCAGTGAGAAAA
TGCGTGTGGGAGAATGAGAAAGGCGCAGAGCAGTATAGAAAGCTGTGTGACGAATGCACTCGTCTCGAGAAAGAGTGTGCTCTTTATCTCCATGACAGAGAAGTGTTCATGGAGGCTGCTGACGAGGCAGAGGAAAGAGCCAATGATGCCGAAGAACGCGTCTTACAAGCCGAAAATAAAATACAAGAATTGGTCTCCCA
AGTTCAACATCTGAAACAGGGGATGTCACACTCTACAGCGAGCAAGTCAAAGATGGCTGAAGAATTGAATTCACTGAGATGTAGAATTTTAGAGCTCGAGTCTGGGAATCACAGCTTGCAGAATGTATCATCCACGATGAAAAAACTTCAAGACGATTGCTTCACAAACCATCAGATTGAGCAACTCGAAAGAGCAAATA
GAGAGCTACGAGCACTTTTAGATATTGCAACCTCTAGAAATGAAGAACAATTAAATGAATGCCAAACTTCTATGCAAGATGCTAAAGAAGACTACTGGAGGGACCAGCTGCTTGTTAGTTCCCTTGTATCCTCGGCTGTTGCCAAAGGGTTATGCAAGGCCACAGAGCAAGACAAGGAAGAAGCAATAGCCAGAATATAT
TTGAATCTTGAAGCTGTCATCAAGGAAATGGGATCAGAGTTGCATAGAAGGCTAGAGGCATCCGAGAAGAAAGCTCAATTATTGAATGCAGAGGTTCAGTCCCTGAGGCAAGAGAAAAACAATATCAAGAGCAATCTTGAGAAGGCAGAGATTGAGGTGCAATTACTAGACGAGGAGAATAAGGAGCTGAGACTACTTCT
ACGTGGGAAATATCAGGGGTCAGATGGCTGTGTTATATCTCCTCTTCAAACAAAAGTTAAAGTCTCTTGTAGCCTGAAGTCACAGTTAAAGTCTCCAGACAATATTTGTGACATGAAGGGAAATGACACAATGCGGCAACCTCTTACACCTCTTGCTCAAAATCCTGCTGAATCAAGGGTGCACCATAGATAGCAGGTGC
CATATTGGTTAATGGAAATGGAGCTGTCGTCAAAGCTTGTGTTGTATTCACTAATATTTACTGTCAAGGTGCATCTGTCAGTTTATAACAGGCACAGTAAAGCTATGGAATGCCTGTTGATGGGAAGTGGCCTTGAAAATTTGAATAAGATAAAATTCATGATTGGTTGTTTTTTGCATATCGAAATTTGTGCATCTGTC
AGTTTATAACAGGCACAGTAAAGCTATGGAATGCCTGTTGATGGGAAGTGGCCTTGAAAATTTGAATAAGATAAAATTCATGATTGGTTGTTATTTGCATATCGAAATTTCATGTGCACGGAAGAATGTAAACATTTTGCACCCCTTCCCTGGCCCCAATTTTTTTGGCTGGAGTTATGTTATTGCAAGCAGTCAGTCAT
CCATTCTTTTAGTTTGTTATTGATGTAAGGTTATTATTGCTCATTACATGTAACATGCCAGCCACATCATTAACTTCAGTTTTTTAATTTTGGGATTTATCAGAGACAATTGTGTTCCGTCACAAGTATAGAAGTGCTTTGAAGCCTTGTAAAATCAAACTCTGTCATTCATTGTTTGATTTGTGATATAAAATATGGAT
TTTTCTTTTAGAAAGCCCATCCATGTGTTGTCAATTTAGTTTGTAGGAAGTTTTGCATAGAACTAAGGTTGTCTAGTTCTATCTTTGAGCATTGATTTTATTTGGGTTTTCTTTGGGGCCTTCAAATGACGTTGTAC