sp|Q9ZUZ2|CAMK3_ARATH ----> CDPK-related kinase 3
Intron 1 GTAATATTCA ... ATGCTGGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 25 | 12 | 6 | 2 |
| A2 | 30.56 | 25 | 13 | 9 |
| A3 | 30.43 | 16 | 6 | 8 |
| A4 | 19.35 | 25 | 11 | 1 |
| A5 | 28.57 | 20 | 11 | 5 |
| A6 | 36.84 | 18 | 12 | 9 |
| A7 | 26.67 | 11 | 4 | 4 |
| A8 | 14.29 | 9 | 2 | 1 |
| A9 | 25 | 12 | 6 | 2 |
| A10 | 40 | 12 | 10 | 6 |
>TRINITY_DN41641_c0_g1_i1 from sample A6 / Example spliced isoformCGCGGTCTACAAATTCCTTACTTGTCGTATGCGATTTAAATGCTTTTTTGCTACTCGCTTTTTGTTTTTCTCCGCCGTCCGTCCAACCAGGGAAAGAGAAACCCGAGGGAAAATATAGCAGAAGAAGAGAGAGGGGAGATTTAAGTCTTATCAATGGAGCCATCTATTCCCCTTTTTATCTTCTTATGATCCTTCTATTC
GTTGTGTTTTGCTGCTGCCTGCTTCTCTTCTCTGTCTCTTTCTCCCGCGTCTCGCACAATCTTAATTGCCCGTCAATTGACAGTACTATCGCCCCTTCTTTTCTTCTGTCGCCGCCTTGGAATCATCTGACCGCTTCTTCTCTTCAGCTCGGATCGGCCTGGCCACACGGATTCCTCCGATCCGCAGCTCCAGAGCCGAG
GAGACACAGAGCGCAAGAGAATACAAGAACCGAGGGGGGGGTGGGTGCAGCGTTCTGGAAGTCGTGTTATTCCAAACGTCGCGTGTTCAAGATCAAGTAACATGCCCCTGGCTCTATGAGGTGAAACCCGGGGGCTCTGAGACAGCATGGGGCAGTGCTATGGAAAGAATATCGCAGTCGAGGACGCGATCGATGGATCG
CGGGATCGAAACAGGGTCGCCAGCAATCAGAATGGAGTGACGTCGTCGTCGGTAAAGAACACCCCGACGCACCCGTCGTCAAGCCCGTGGCGGAGCCCTTACCCACACGCACCGAGTCCCCTGCCCAGCAATTCCAGCCCCTTGCCCCCGGGCGTATCGCCTTCCCCCGCGAGGTCGACTCCCAGGAGGTTCTTCCGCAG
GCCATTCCCTCCTCCGTCCCCAGCCAAGCACATAAAGTCTTCGCTCGCCAAGAGACAGGGTGTCCCCAAGCCCAAGGACGGTCCTATACCTGAGGAAGGCGTCGAGAATGAGAGGCCGCTCGATAAAAGCTTCGGTTACAGCAAGAATTTTGCTTCCAAGTATGAATTGGGGCATGAGGTCGGCCGAGGCCATTTCGGCC
ACACCTGCTTTGCCAAGTCTCGCAAAGGTGAACTCAAGGGCCAGCCTGTTGCAGTCAAAATCATCTCCAAAGCCAAGATGACAACTGCCATAGCAATTGAAGATGTGCGGAGAGAGGTCAAAATTTTAAGAGCATTGTCGGGGCATCACAACTTGGTCAAATTCTATGATGCTTGCGAGGATGCCAACAATGTCTACATA
ATAATGGAACTGTGTGAAGGTGGTGAGTTGCTAGACAGAATTTTGTCGCGAGGTGGCAAATATTCAGAAGAAGATGCAAAAGTTATTGTGAGACAAATCTTGAACATAGTGTCCTTTTGTCACATTCAAGGTGTTGTGCACCGTGATTTGAAGCCAGAGAATTTCCTATTCACGACTAAGGATGAACATGCACCTATGAA
GGCTATTGATTTTGGGCTCTCAGATTTCATCAGACCAGATGAGAGACTAAATGATATAGTAGGCAGCGCATATTATGTTGCGCCAGAAGTTCTTCACCGATCATATAGTATGGAAGCCGATGTATGGAGTGTTGGTGTCATAACGTACATTTTATTATGTGGAAGTCGACCTTTTTGGGCAAGGACCGAATCAGGAATTT
TCCGTGCAGTTTTAAGAGCTGATCCTAATTTTGATGATGCACCATGGCCGTCGGTGTCTCCTGATGCAAAGGATTTTGTGAAAAGGCTTCTTAACAAAGATTTGCGCAAAAGAATGACAGCTGCCCAGGCCCTTACACATCCGTGGCTTCGAGGGCAACATGCAATTCCATTGGATATTTTGATTTTCAGATTAGTCAAA
GCATATATTCGAGCTTCTCCATTGAAACGGGCAGCTCTGAAGGCACTGTCAAGATCATTGACAGAAAATGAATTATTTTACCTCAGATCACAGTTTAAACTTCTTGAACCCAACAAGGATGGAAAGATTTCCCTTGAAAACTTCAGATCGGCATTAATGAGGAATTCAACTGAGGCTATGAAGGAGTCTAAGGTTCTCGA
TATTCTCAATTCGATGGAAAATCTTGCTTCAAGAAAGATGGACTTTGAAGAGTTCTGTGCTGCTGCAATTAGTATATATCAGCTAGAAGCCCTAGACCGGTGGGAGCAGATTGCAAGCACTGCATATGAATTCTTTGAACAGGAGGGGAATAAAGTTATTTCAGTTGAGGAACTAGCTCGGGAAATGAATCTTGCACCTA
CTGCACATACAGTTCTGCATGATTGGATAAGAAGCACAGATGGGAAACTAAGTTTTCATGGGTTTACAAAGTTTCTTCACGGTGTAACAGTGCGCTCAAGTACCAGGCCTCAATAAATGCTCCACAGGTTGTGTTTAATATTGTCATTTATTTAATGTCATTGTCAGGGAGCGCTTAGTTCTGTTAGTTAGCTGTATCTA
TCAGTAAATTTGGTGCCAGTTGAGCAATTCTGTTGAACTTTATCTTGAAGAGCAGCCATGATAGCTTCCTTGTAGACATACTTCCAGGATCTTTGTGTCATTGCACAGCCTCTCCATGAAAGTTTGATCACCCTGGCAAGCTTCCTGGAATTGTCTTTTTTTTTCCGAATCATTCCTTCCAGTGTATCTACTGATGTATG
TATAGGCCTGTTTTCCATGATTGTCCAAGAAAACTGTGCCAAAGAGAGGCATTGAAGATTTAAGAAAATACTACAAATGCAATCAGATGGCTCAGATTCTTTCATTTTCCCCTGTGATGCCAATTTTAAATGCGGATGCATGTTCATACCCAGTGATCTGCTAGCAGAGCAGATTTCTGCATAGCACCTGAATTTGGGAT
AAAATTAATGATCTCTATATGTCTCTAAGCTGAACTGGGAATGCCGTGCTTTAGAATGTCATTCCCCGAGTCATTGTTATATTTATTGTGCAGCTTATTTGTCTTGTTAGCTTGCCTTTTAGTTATATTACTTCGCCATCAGTGGCAGTTTTCATAGTGCAATATTTTTGCATAATAGCCTTGGTTGATGGATATTTATA
ACTGAAGACAGAACACTGTTGTTTATGATTGAGGGAAACAGCGTGTAAAATCTATTTGATCATCCAGATTGGTGTATTGTTCTTCATGGGGATTGCATAAAGGGTATGCAATTTCTCTCTGGATCTGACGGTAAGTTGTTCTGTGCAAATAAACTTTTTCTGCCTTGCGGTTCTTGTTTACATGTCTTTTGCTTGTGTTA
AAATCTCAATATTGTTGATATTACTGGAGACTTGATGCTGGACTGTATTACTGGGGTCTTAGTGGCGGACTGTTAAAACTGGGATCATTGTTCAGGTGTCTCAGTTATTAGACATGCCTGATTTTTTATAAGAATATTATATGCTAGCA
>TRINITY_DN41641_c0_g1_i3 from sample A6 / Example unspliced isoform:CGCGGTCTACAAATTCCTTACTTGTCGTATGCGATTTAAATGCTTTTTTGCTACTCGCTTTTTGTTTTTCTCCGCCGTCCGTCCAACCAGGGAAAGAGAAACCCGAGGGAAAATATAGCAGAAGAAGAGAGAGGGGAGATTTAAGTCTTATCAATGGAGCCATCTATTCCCCTTTTTATCTTCTTATGATCCTTCTATTC
GTTGTGTTTTGCTGCTGCCTGCTTCTCTTCTCTGTCTCTTTCTCCCGCGTCTCGCACAATCTTAATTGCCCGTCAATTGACAGTACTATCGCCCCTTCTTTTCTTCTGTCGCCGCCTTGGAATCATCTGACCGCTTCTTCTCTTCAGCTCGGATCGGCCTGGCCACACGGATTCCTCCGATCCGCAGCTCCAGAGCCGAG
GAGACACAGAGCGCAAGAGAATACAAGAACCGAGGGGGGGGTGGGTGCAGCGTTCTGGAAGTCGTGTTATTCCAAACGTCGCGTGTTCAAGATCAAGTAACATGCCCCTGGCTCTATGAGGTGAAACCCGGGGGCTCTGAGACAGCATGGGGCAGTGCTATGGAAAGAATATCGCAGTCGAGGACGCGATCGATGGATCG
CGGGATCGAAACAGGGTCGCCAGCAATCAGAATGGAGTGACGTCGTCGTCGGTAAAGAACACCCCGACGCACCCGTCGTCAAGCCCGTGGCGGAGCCCTTACCCACACGCACCGAGTCCCCTGCCCAGCAATTCCAGCCCCTTGCCCCCGGGCGTATCGCCTTCCCCCGCGAGGTCGACTCCCAGGAGGTTCTTCCGCAG
GCCATTCCCTCCTCCGTCCCCAGCCAAGCACATAAAGTCTTCGCTCGCCAAGAGACAGGGTGTCCCCAAGCCCAAGGACGGTCCTATACCTGAGGAAGGCGTCGAGAATGAGAGGCCGCTCGATAAAAGCTTCGGTTACAGCAAGAATTTTGCTTCCAAGTATGAATTGGGGCATGAGGTCGGCCGAGGCCATTTCGGCC
ACACCTGCTTTGCCAAGTCTCGCAAAGGTGAACTCAAGGGCCAGCCTGTTGCAGTCAAAATCATCTCCAAAGCCAAGATGACAACTGCCATAGCAATTGAAGATGTGCGGAGAGAGGTCAAAATTTTAAGAGCATTGTCGGGGCATCACAACTTGGTCAAATTCTATGATGCTTGCGAGGATGCCAACAATGTCTACATA
ATAATGGAACTGTGTGAAGGTGGTGAGTTGCTAGACAGAATTTTGTCGCGAGGTGGCAAATATTCAGAAGAAGATGCAAAAGTTATTGTGAGACAAATCTTGAACATAGTGTCCTTTTGTCACATTCAAGGTGTTGTGCACCGTGATTTGAAGCCAGAGAATTTCCTATTCACGACTAAGGATGAACATGCACCTATGAA
GGCTATTGATTTTGGGCTCTCAGATTTCATCAGACCAGATGAGAGACTAAATGATATAGTAGGCAGCGCATATTATGTTGCGCCAGAAGTTCTTCACCGATCATATAGTATGGAAGCCGATGTATGGAGTGTTGGTGTCATAACGTACATTTTATTATGTGGAAGTCGACCTTTTTGGGCAAGGACCGAATCAGGAATTT
TCCGTGCAGTTTTAAGAGCTGATCCTAATTTTGATGATGCACCATGGCCGTCGGTGTCTCCTGATGCAAAGGATTTTGTGAAAAGGCTTCTTAACAAAGATTTGCGCAAAAGAATGACAGCTGCCCAGGCCCTTAgtaatattcaattcccgttatgctggcagCACATCCGTGGCTTCGAGGGCAACATGCAATTCCAT
TGGATATTTTGATTTTCAGATTAGTCAAAGCATATATTCGAGCTTCTCCATTGAAACGGGCAGCTCTGAAGGCACTGTCAAGATCATTGACAGAAAATGAATTATTTTACCTCAGATCACAGTTTAAACTTCTTGAACCCAACAAGGATGGAAAGATTTCCCTTGAAAACTTCAGATCGGCATTAATGAGGAATTCAACT
GAGGCTATGAAGGAGTCTAAGGTTCTCGATATTCTCAATTCGATGGAAAATCTTGCTTCAAGAAAGATGGACTTTGAAGAGTTCTGTGCTGCTGCAATTAGTATATATCAGCTAGAAGCCCTAGACCGGTGGGAGCAGATTGCAAGCACTGCATATGAATTCTTTGAACAGGAGGGGAATAAAGTTATTTCAGTTGAGGA
ACTAGCTCGGGAAATGAATCTTGCACCTACTGCACATACAGTTCTGCATGATTGGATAAGAAGCACAGATGGGAAACTAAGTTTTCATGGGTTTACAAAGTTTCTTCACGGTGTAACAGTGCGCTCAAGTACCAGGCCTCAATAAATGCTCCACAGGTTGTGTTTAATATTGTCATTTATTTAATGTCATTGTCAGGGAG
CGCTTAGTTCTGTTAGTTAGCTGTATCTATCAGTAAATTTGGTGCCAGTTGAGCAATTCTGTTGAACTTTATCTTGAAGAGCAGCCATGATAGCTTCCTTGTAGACATACTTCCAGGATCTTTGTGTCATTGCACAGCCTCTCCATGAAAGTTTGATCACCCTGGCAAGCTTCCTGGAATTGTCTTTTTTTTTCCGAATC
ATTCCTTCCAGTGTATCTACTGATGTATGTATAGGCCTGTTTTCCATGATTGTCCAAGAAAACTGTGCCAAAGAGAGGCATTGAAGATTTAAGAAAATACTACAAATGCAATCAGATGGCTCAGATTCTTTCATTTTCCCCTGTGATGCCAATTTTAAATGCGGATGCATGTTCATACCCAGTGATCTGCTAGCAGAGCA
GATTTCTGCATAGCACCTGAATTTGGGATAAAATTAATGATCTCTATATGTCTCTAAGCTGAACTGGGAATGCCGTGCTTTAGAATGTCATTCCCCGAGTCATTGTTATATTTATTGTGCAGCTTATTTGTCTTGTTAGCTTGCCTTTTAGTTATATTACTTCGCCATCAGTGGCAGTTTTCATAGTGCAATATTTTTGC
ATAATAGCCTTGGTTGATGGATATTTATAACTGAAGACAGAACACTGTTGTTTATGATTGAGGGAAACAGCGTGTAAAATCTATTTGATCATCCAGATTGGTGTATTGTTCTTCATGGGGATTGCATAAAGGGTATGCAATTTCTCTCTGGATCTGACGGTAAGTTGTTCTGTGCAAATAAACTTTTTCTGCCTTGCGGT
TCTTGTTTACATGTCTTTTGCTTGTGTTAAAATCTCAATATTGTTGATATTACTGGAGACTTGATGCTGGACTGTATTACTGGGGTCTTAGTGGCGGACTGTTAAAACTGGGATCATTGTTCAGGTGTCTCAGTTATTAGACATGCCTGATTTTTTATAAGAATATTATATGCTAGCA
Intron 2 GTATATTTAA ... ATCTTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 4.55 | 42 | 2 | 0 |
| A2 | 12.07 | 51 | 7 | 0 |
| A3 | 9.76 | 37 | 4 | 2 |
| A4 | 8.16 | 45 | 4 | 0 |
| A5 | 27.59 | 21 | 8 | 2 |
| A6 | 0.88 | 112 | 1 | 0 |
| A7 | 3.7 | 52 | 2 | 0 |
| A8 | 4.55 | 63 | 3 | 0 |
| A9 | 5.17 | 55 | 3 | 0 |
| A10 | 0 | 36 | 0 | 0 |
>TRINITY_DN107143_c4_g2_i9 from sample A3 / Example spliced isoformGTTAGTTTATGCTTTATTCTAGTAAAACATAGCTGTCCTTCAGTTATTTTCTTTTACTGCACAGATAGGCCCCTGCCTATATTAGACTTTGAAGGTTGTTCATAGGTCACAATTAACAACCTTTAAATATCTTGGGTGATTTTGGCATACATTGTTTAGGACTACAGATTGTTGGTTTGAATTTGAGGTGGCATGTTTTT
GCTTAAAGTTAATAATTGAATTATTAGGTAATATTCAATTCCCGTTATGCTGGCAGCACATCCGTGGCTTCGAGGGCAACATGCAATTCCATTGGATATTTTGATTTTCAGATTAGTCAAAGCATATATTCGAGCTTCTCCATTGAAACGGGCAGCTCTGAAGTACAAAGAATAAGTATAGGGAAGTGCACAGTGTGAAC
AATAGTATGGCCACTGGTTTTTTGATACTGGAAACAAGGCACTGTCAAGATCATTGACAGAAAATGAATTATTTTACCTCAGATCACAGTTTAAACTTCTTGAACCCAACAAGGATGGAAAGATTTCCCTTGAAAACTTCAGATCGGCATTAATGAGGAATTCAACTGAGGCTATGAAGGAGTCTAAGGTTCTCGATATT
CTCAATTCGATGGAAAATCTTGCTTCAAGAAAGATGGACTTTGAAGAGTTCTGTGCTGCTGCAATTAGTATATATCAGCTAGAAGCCCTAGACCGGTGGGAGCAGATTGCAAGCACTGCATATGAATTCTTTGAACAGGAGGGGAATAAAGTTATTTCAGTTGAGGAACTAGCTCGGGAAATGAATCTTGCACCTACTGC
ACATACAGTTCTGCATGATTGGATAAGAAGCACAGATGGGAAACTAAGTTTTCATGGGTTTACAAAGTTTCTTCACGGTGTAACAGTGCGCTCAAGTACCAGGCCTCAATAAATGCTCCACAGGTTGTGTTTAATATTGTCATTTATTTAATGTCATTGTCAGGGAGCGCTTAGTTCTGTTAGTTAGCTGTATCTATCAG
TAAATTTGGTGCCAGTTGAGCAATTCTGTTGAACTTTATCTTGAAGAGCAGCCATGATAGCTTCCTTGTAGACATACTTCCAGGATCTTTGTGTCATTGCACAGCCTCTCCATGAAAGTTTGATCACCCTGGCAAGCTTCCTGGAATTGTCTTTTTTTTTCCGAATCATTCCTTCCAGTGTATCTACTGATGTATGTATA
GGCCTGTTTTCCATGATTGTCCAAGAAAACTGTGCCAAAGAGAGGCATTGAAGATTTAAGAAAATACTACAAATGCAATCAGATGGCTCAGATTCTTTCATTTTCCCCTGTGATGCCAATTTTAAATGCGGATGCATGTTCATACCCAGTGATCTGCTAGCAGAGCAGATTTCTGCA
>TRINITY_DN107143_c4_g2_i4 from sample A3 / Example unspliced isoform:CCCACACGCACCGAGTCCCCTGACCAGCAATTCCAGCCCCTTGCCCCCGGGCGTATCGCCTTCCCCCGCGAGGTCGACTCCCAGGAGGTTCTTCCGCAGGCCATTCCCTCCTCCGTCCCCAGCCAAGCACATAAAGTCTTCGCTCGCCAAGAGACAGGGTGTCCCCAAGCCCAAGGACGGTCCTATACCTGAGGAAGGCG
TCGAGAATGAGAGGCCGCTCGATAAAAGCTTCGGTTACAGCAAGAATTTTGCTTCCAAGTATGAATTGGGGCATGAGGTCGGCCGAGGCCATTTCGGCCACACCTGCTTTGCCAAGTCTCGCAAAGGTGAACTCAAGGGCCAGCCTGTTGCAGTCAAAATCATCTCCAAAGCCAAGATGACAACTGCCATAGCAATTGAA
GATGTGCGGAGAGAGGTCAAAATTTTAAGAGCATTGTCGGGGCATCACAACTTGGTCAAATTCTATGATGCTTGCGAGGATGCCAACAATGTCTACATAATAATGGAACTGTGTGAAGGTGGTGAGTTGCTAGACAGAATTTTGTCGCGAGGTGGCAAATATTCAGAAGAAGATGCAAAAGTTATTGTGAGACAAATCTT
GAACATAGTGTCCTTTTGTCACATTCAAGGTGTTGTGCACCGTGATTTGAAGCCAGAGAATTTCCTATTCACGACTAAGGATGAACATGCACCTATGAAGGCTATTGATTTTGGGCTCTCAGATTTCATCAGACCAGATGAGAGACTAAATGATATAGTAGGCAGCGCATATTATGTTGCGCCAGAAGTTCTTCACCGAT
CATATAGTATGGAAGCCGATGTATGGAGTGTTGGTGTCATAACGTACATTTTATTATGTGGAAGTCGACCTTTTTGGGCAAGGACCGAATCAGGAATTTTCCGTGCAGTTTTAAGAGCTGATCCTAATTTTGATGATGCACCATGGCCGTCGGTGTCTCCTGATGCAAAGGATTTTGTGAAAAGGCTTCTTAACAAAGAT
TTGCGCAAAAGAATGACAGCTGCCCAGGCCCTTACACATCCGTGGCTTCGAGGGCAACATGCAATTCCATTGGATATTTTGATTTTCAGATTAGTCAAAGCATATATTCGAGCTTCTCCATTGAAACGGGCAGCTCTGAAGGCACTGTCAAGATCATTGACAGAAAATGAATTATTTTACCTCAGATCACAGTTTAAACT
TCTTGAACCCAACAAGGATGGAAAGATTTCCCTTGAAAACTTCAGATCGGCATTAATGAGGAATTCAACTGAGGCTATGAAGGAGTCTAAGGTTCTCGATATTCTCAATTCGATGGAAAATCTTGCTTCAAGAAAGATGGACTTTGAAGAGTTCTGTGCTGCTGCAATTAGTATATATCAGCTAGAAGCCCTAGACCGGT
GGGAGCAGATTGCAAGCACTGCATATGAATTCTTTGAACAGGAGGGGAATAAAGTTATTTCAGTTGAGGAACTAGCTCGGgtatatttaactaacctgcagctaaagtggcaactttgctaactatttgaaagaaattgatcatgaaataagtttatcctcttatctttgcagGAAATGAATCTTGC