sp|Q9FKP0|PSRP6_ARATH ----> Large ribosomal subunit protein cL38

Intron 1 GTGAGCATTG ... CCATGTTCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	75	2	5	7
A2	84.62	1	5	6
A3	100	0	3	1
A4	75	1	3	3
A5	33.33	2	2	0
A6	66.06	45.5	114	63
A7	71.4	23.2	85	31
A8	63.91	39.8	80	60.8
A9	60.33	49.8	97	54.6
A10	64.71	15	46	9

>TRINITY_DN40953_c0_g1_i2 from sample A6 / Example spliced isoform

CGCAATTGGCATAACCTTAATGTGAATTTTAGACGATAGGAAATTACGTCTAAATATTTAGACACTAAACACACCGCAAATTGGACGGTAGGAATTTTTATGGATACAGAGTATACATAGTTTTCATTATCTTCTTATCCGTATTGTATTGCAGAGACATGGCGATGATGTTATCAGCCGCAGGAGTCATCTCAAACAGG
CCCTCGTTCCTTGGCTCCAGAATCTGGGGCAGAAAACCCATGATAACCCCAATGCCCACTGTCTCCATCTCCATCCCGAGAGTCCCCCAACGTCCCAGAATTTCACTGACTATCGAATGCTCATCTCGCCCGAAGAAGAAGGCGACCGCCCACCATGTTAAAACGAGGCCGAAGAAGCACCAGCCTTACGACAAGAACAG
GAAAGGCCCCACCAAATACCCTCCCCTTCCTAGGCCCCCAGTCAAACTATCAGTAGCAGTAGCTTCTGCTTCATCCGACAATACAGAAGAAAAGGAAACAGTAGTAGTAGAAGAAGAAGCTGTTCCTGCAGTTGCAACTCCAACTCCTGTTGTGCCTGATGTACTCTAGAGCGGTGTGGTGATGAGATTTCGACCAGTTT

ATTTTTGTTAACAGTTTACTGACAGACACACCAGTGCTAGAATTTTAGAGGCTGGGCTAATCTAGTTATCTACATATCTCAAGCTGTACAAAGTTCTTATTGTTGAAGGGTTGAATGAAATATATGCAGTAAACCATTGTAAATGCAGGTGCCACAAGGTTTAAGTAGTAGTTATTGCCTTCATAAACTTACAAATTAAT
GGGTAACATACTAAGTTAACCCTTTCCGTGGAATGGGATAGAAGTCATATAGAGAATTTGTTTAATGTTTGCAATATTTTAAATTACTTTATAGGCTAGAAGAGAAAACTCTTTCGGGGCTAGAAATTAGAATTCATAAATTGTCTATATTCTTTGCTACTATCCTTTTATGGGATCCCACAGAAGTCCACTTCCAATAG
CCTCACTGCCAACTGCCCCACTGCCAACAAGAGCATATATGTGAGCTCTAATCTAGTGTTGTTACTGTTGTGGGCTTACCTGGCGACACTAAAGTGAGGCCTTTCTCACGTTAAGGGATTCCTGTGTGTTGCTTTATGGTTTACCTGATGCTGTTGGTTATATATTCAAGAAAAAATATAGACAATGATTT

>TRINITY_DN40953_c0_g1_i1 from sample A6 / Example unspliced isoform:

CGCAATTGGCATAACCTTAATGTGAATTTTAGACGATAGGAAATTACGTCTAAATATTTAGACACTAAACACACCGCAAATTGGACGGTAGGAATTTTTATGGATACAGAGTATACATAGTTTTCATTATCTTCTTATCCGTATCGCATTGCAGAGACATGGCGATGATGTTATCAGCCGCAGGAGTCATCTCAAACAGG
CCCTCGTTCCTTGGCTCCAGAATCTGGGGCAGAAAACCCATGATAACCCCAATGCCCACTGTCTCCATCTCCATCCCGAGAGTCCCCCAACGTCCCAGAATTTCACTGACTATCGAATGCTCATCTCGCCCGAAGAAGAAGGCGACCGCCCACCATGTTAAAACGAGGCCGAAGAAGCACCAGCCTTACGACAAGAACAG
GAAAGGCCCCACCAAATACCCTCCCCTTCCTAGGCCCCCAGTCAAACTATCAGTAGCAGTAGCTTCTGCTTCATCCGACAATACAGAAGAAAAGGAAACAGTAGTAGTAGAAGAAGAAGCTGTTCCTGCAGTTGCAACTCCAACTCCTGTTGTGCCTGATGTACTCTAGAGCGGTGTGGTGATGAGATTTCGACCAGTTT

ATTTTTgtgagcattgagttctcaaataaaaaaacgtagtagttgttcaccattgttattagttgcactgttttatgacacgaccttagggcagttgctgtaaggactccctgttctttggaaattgttttactagatgcaagtttcctgctcgtgactttagcatgaagtttaatgaaaagttctctttggttctgtct
tactcatgcactattggtcagagcttacattggatctagtattttcttcttccttacatttttttccaatttccatgttcagGTTAACAGTTTACTGACAGACACACCAGTGCTAGAATTTTAGAGGCTGGGCTAATCTAGTTATCTACATATCTCAAGCTGTACAAAGTTCTTATTGTTGAAGGGTTGAATGAAATATA
TGCAGTAAACCATTGTAAATGCAGGTGCCACAAGGTTTAAGTAGTAGTTATTGCCTTCATAAACTTACAAATTAATGGGTAACATACTAAGTTAACCCTTTCCGTGGAATGGGATAGAAGTCATATAGAGAATTTGTTTAATGTTTGCAATATTTTAAATTACTTTATAGGCTAGAAGAGAAAACTCTTTCGGGGCTAGA
AATTAGAATTCATAAATTGTCTATATTCTTTGCTACTATCCTTTTATGGGATCCCACAGAAGTCCACTTCCAATAGCCTCACTGCCAACTGCCCCACTGCCAACAAGAGCATATATGTGAGCTCTAATCTAGTGTTGTTACTGTTGTGGGCTTACCTGGCGACACTAAAGTGAGGCCTTTCTCACGTTAAGGGATTCCTG
TGTGTTGCTTTATGGTTTACCTGATGCTGTTGGTTATATATTCAAGAAAAAATATAGACAATGATTT

Intron 2 GTTGTGCCTG ... CCATGTTCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	66.67	2	1	7
A2	71.43	2	4	6
A3	100	0	4	1
A4	38.46	4	2	3
A5	71.43	1	5	0
A6	58.6	59	104	63
A7	61.01	31	66	31
A8	55.84	51	68	61
A9	55.38	58	90	54
A10	52.38	20	35	9

>TRINITY_DN39670_c0_g1_i3 from sample A9 / Example spliced isoform

TGTATTGCAGAGACATGGCGATGATGTTATCAGCCGCAGGAGTCATCTCAAACAGGCCCTCGTTCCTTGGCTCCAGAATCTGGGGCAGAAAACCCATGATAACCCCAATGCCCACTGTCTCCATCTCCATCCCGAGAGTCCCCCAACGTCCCAGAATTTCACTGACTATCGAATGCTCATCTCGCCCGAAGAAGAAGGCG
ACCGCCCACCATGTTAAAACGAGGCCGAAGAAGCACCAGCCTTACGACAAGAACAGGAAAGGCCCCACCAAATACCCTCCCCTTCCTAGGCCCCCAGTCAAACTATCAGTAGCAGTAGCTTCTGCTTCATCCGACAATACAGAAGAAAAGGAAACAGTAGTAGTAGAAGAAGAAGCTGTTCCTGCAGTTGCAACTCCAAC
TCCTGTTAACAGTTTACTGACAAACACACCAGTGCTAGAATTTTAGAGGCTGGGCTAATCTAGTTATCTACATATCTCAAGCTGTACAAAGTTCTTACTGTTGAAGGGTTGAATGAAATATATGCAGTAAACCATTGTAAATGCAGGTGCCACAAGGTTTAAGTAGTAGTTATTGCCTTCATAAACTTACAAATTAATGG
GTAACATACTAAGTTAACCCTTTCCGTGGAATGGGATAGAAGTCATATAGAGAATTTGTTTAATGTTTGCAATATTTTACTGTCCTAGGTTGGATTGAAATTACTTTATAGGCTAGAAGAGAAAACTCTTTCGGGGCTAGAAATTAGAATTCATAAATTGTCTATATTCTTATGGGATCCCACAGAAGTCCACTGCCAAT
AGCCTCACTGCCAACTGCCCGACTGCCAACAAGAGCATATCTGTGAGCTCTAATCTAGTGTTGTTACTGTTGTGGGCTTACCTGGCGACACTAAAGTGAGGCCTTTCTCACGTTAGGGGATTCCTGTGTGTTGCTTTATGGTTTACCTGATGCTGTTGGTTATATATTCAAGAAAAAATATAGACAATGATTTCATTCAA
AAAA

>TRINITY_DN39670_c0_g1_i4 from sample A9 / Example unspliced isoform:

CTTAATGTGAATTTTAGACGATAGGAAATTACGTCTAAATATTTAGACACTAAACACACCGCAAATTGGACGGTAGGAATTTTTATGGATACGGAGTATACATAGTTTTCATTATCTTCTTATCCGTATTGTATTGCAGAGACATGGCGATGATGTTATCAGCCGCAGGAGTCATCTCAAACAGGCCCTCGTTCCTTGGC
TCCAGAATCTGGGGCAGAAAACCCATGATAACCCCAATGCCCACTGTCTCCATCTCCATCCCGAGAGTCCCCCAACGTCCCAGAATTTCACTGACTATCGAATGCTCATCTCGCCCGAAGAAGAAGGCGACCGCCCACCATGTTAAAACGAGGCCGAAGAAGCACCAGCCTTACGACAAGAACAGGAAAGGCCCCACCAA
ATACCCTCCCCTTCCTAGGCCCCCAGTCAAACTATCAGTAGCAGTAGCTTCTGCTTCATCCGACAATACAGAAGAAAAGGAAACAGTAGTAGTAGAAGAAGAAGCTGTTCCTGCAGTTGCAACTCCAACTCCTgttgtgcctgatgtactctaaagcggtgtggtgatgagatttcgaccagtttatttttgtgagcatt
gagttctcaaataaaaaaacgtagtagttgttcaccattgttattagttgcactgttttatgacacgaccttagggcagttgctgtaaggactccctgttctttggaaattgttttactagatgcaagtttcctgctcgtgactttagcatgaagtttaatgaaaagttctatttgtttctgtcttactcatgcactatt
agtcagagcttagattggatctagtattttcttcttccttacatttttttccaatttccatgttcagGTTAACAGTTTACTGACAAACACACCAGTGCTAGAATTTTAGAGGCTGGGCTAATCTAGTTATCTACATATCTCAAGCTGTACAAAGTTCTTACTGTTGAAGGGTTGAATGAAATATATGCAGTAAACCATTG
TAAATGCAGGTGCCACAAGGTTTAAGTAGTAGTTATTGCCTTCATAAACTTACAAATTAATGGGTAACATACTAAGTTAACCCTTTCCGTGGAATGGGATAGAAGTCATATAGAGAATTTGTTTAATGTTTGCAATATTTTACTGTCCTAGGTTGGATTGAAATTACTTTATAGGCTAGAAGAGAAAACTCTTTCGGGGC
TAGAAATTAGAATTCATAAATTGTCTATATTCTTATGGGATCCCACAGAAGTCCACTGCCAATAGCCTCACTGCCAACTGCCCGACTGCCAACAAGAGCATATCTGTGAGCTCTAATCTAGTGTTGTTACTGTTGTGGGCTTACCTGGCGACACTAAAGTGAGGCCTTTCTCACGTTAGGGGATTCCTGTGTGTTGCTTT
ATGGTTTACCTGATGCTGTTGGTTATATATTCAAGAAAAAATATAGACAATGATTTCATTCAAAAAA