sp|P0DO03|DJA8_ORYSJ ----> Chaperone protein dnaJ A8, chloroplastic
Intron 1 GTGCAGACTG ... AAAATCTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 62.96 | 5 | 14 | 3 |
| A2 | 62.5 | 9 | 15 | 15 |
| A3 | 80 | 1 | 5 | 3 |
| A4 | 88.89 | 1 | 6 | 10 |
| A5 | 83.33 | 1 | 3 | 7 |
| A6 | 85.71 | 3 | 16 | 20 |
| A7 | 68.63 | 16 | 42 | 28 |
| A8 | 87.5 | 6 | 40 | 44 |
| A9 | 79.31 | 9 | 36 | 33 |
| A10 | 88.46 | 3 | 25 | 21 |
>TRINITY_DN46271_c0_g1_i6 from sample A7 / Example spliced isoformAAAAGGGTGATGACATAAGGTTTCTATTTGTGCAAGATGTAGAGGTGAAGGTAAGGTGATTACTAATCCATGCAATAGATGTGGTGGGGATAGTAGAGTTCGGTCCAAGAAAACTATCAATCTCAACATTCCACCAGGAGTGAGTGGTGGCATTACTTTACAAGTTTCTGGCGAAGGACATTCTGGGCCAAAAGGGGGCC
CAGCTGGTGATCTGTATGTGTTTCTTGATGTCAAGGAGATGCCTGGAATTGAAAGAGATGGTGTCAACCTCCGCTCTAAAATTACTATCAACTATACTGAAGCAATTCTTGGAACAGTGGTAAAGTGATTTGGAGCGCAAACTTGT
>TRINITY_DN46271_c0_g1_i2 from sample A7 / Example unspliced isoform:ACACAATGGTTTTGTATTTGAGAAACATCGGCTCTCTTTATCCTAAAATGCTCCTGACTCTATTCTTAAATTTCAGACGAAGTTACGCCTCCTTGTAGTCACCCCATTCTCAAATTGCTGTCCAATGCATTGTTATTACAATCCCTGGCATCAAGAAATCGAATAACAATGGAGTTTACAAAGATTTTGGGTACCCTTGT
CGATATCTGAATGCTCTATGAAAATCCAACTCTACCGGCCACTATCATACGTATTAGATTATTTTAATCATGCAAAGTGTGTCATATGCTCATTCATGGCCGGTCATTTCACGTACACTTAATGGGAGCCATTGCGAACAGACTGGGGCTGCGGTTTCAAATTTACAGTGGGTTTCAAGCTTAAGAACAAAAAACGCATT
GTTTGCTGTTAGTCATGGCTGCCATTTTTTCAGTGGAGATGAAGGGTTTTTCAGACGTGGTTATTTGTTGGATTTTAAGTTGGGCAGAGCTAAACGGGGGAAAATGGTAATTACAATGGCGGCCACTGATTATTATAGTACACTGCAGGTATACAAAACGGCCACCAAACGAGATATTACGGTTTCTTACAGAAAACTTG
CACGTCAGTATCATCCAGATATCAATAAGAGTCCTGGAGCTGAAGAAAAGTTCAAGAAGATTGCTGCTGCATATGAGGTTTTATCTGACGATGAAAAGAGATCTTTGTATGACCAGTTTGGAGAGGCAGGTGTAAGAGGCGCATCTGGAGATTCCTCTGCCAGTCCAAATAGGGTTGATCCCTTTGATCTCTTTGAGTCA
ATGTTTTCTGGAAGGAAAGGAGTTTTTGATGATTTTAGAGATATTGGAGGTACTAGCTTTAAAGTTCGACATGGTGGGCGTCAAAAGGGTGATGACATAAGGTTTGACTTGTCTCTGAACTTTAAGGAAGCAATTTTTGGAGTTGTGAAGGACATTGAAATAAATCGCCTGGAGACTTGTGGAATTTGCATGGGGAGCGG
GGCAAGATCTGGCACAAATGTTAAGATTTGTCAAGATTGTGGAGGCAAGGGCAATGTGACGGAATCCCAGAGGACGCCATATGGAATATATTCACAGGTTTCTATTTGTGCAAGATGTAGAGGTGAAGGTAAGGTGATTACTAATCCATGCAATAGATGTGGTGGGGATAGTAGAGTTCGGTCCAAGAAAACTATCAATC
TCAACATTCCACCAGGAGTGAGTGGTGGCATTACTTTACAAGTTTCTGGCGAAGGACATTCTGGGCCAAAAGGGGGCCCAGCTGGTGATCTGTATGTGTTTCTTGATGTCAAGGAGATGCCTGGAATTGAAAGAGATGGTGTCAACCTCCGCTCTAAAATTACTATCAACTATACTGAAGCAATTCTTGGAACAGTGGTA
AAGgtgcagactgtggaaggattcaagaatcttgaaattcctgcagggacacaaccaggtgaagagttagccatgcgaaacatgggtgttcctaagcttagaaatccttcagcacgtggtgatcacttgatcgtagtgaatgtttccatccccaaaaatctcagTGATTTGGAGCGCAAACTTGTTGAAGAACTTGCACA
ACTCAATAGCTCTAGCAGATTTTTCTCAAACTTTTCCCATGGTGGTGACCAATCAATTAAGGGGCAACAAAAGAATAAACTAAGGACAAATAGTAAAGTTAGTGCACAACAAAATGGTAAAGAGTCATCCTTTTGGGATTCAATCAAGAATATGGCAAGGTGGAAAAGATCCAGAAACAAATTTGGTTCCATGAGTTTAC
AAGCAACGGTTTTGGAGTATCCATTTGTTGCGAGTCCCAACTCAACTCTCACTTATCATTTTTTTTCTCCTCCAATGGCATTGTTGGTACTATTTATTTGTATTGTATTTTTGTCTAGAGATATTCAGAAAAGATCCAAACGTTGGAAATCTTCATGTACATTTGATAATCCTGAAAGGAATGCATCGACTTGAAATATG
GAATCTGCATTCATATTGTAGCTTTTATGCATCTTGAGATTAAAATAACTGCAATCCCAAATGAATAATATAATATCATACAAGAGATTTTATAGAGGAATGATATCCTTTCAAGCTAAGAATCTTTTTTCTTTGGTTTTTATGTTTGTGGGCACCTGCCTTTGTAGTTGGAGGATGTGAATTGAGATGCATAAACATAG
TGGACGCAGCTTCATTTTACTTTTTAGAATAAGCATGTATTAACGAGTTAGGTTAGGTTATGACTTAGATTACAGAATATGGCAGTTGTGTTTATTATCCAAGTGCAGCCATACTTTCCTTGGCTTGTAATGCCCAAGCCATGAGGCAATATGTACCGATTTTTCAAGAGATGCGCCTTGAAGTTATCTGGCCAGGGTAC
ATGGAAGTCATTTCTTTGATTTATTATTTCTTGCTCTACCAATATTTATTTCCAGATGTCTTGTAGATGAGACATTCAAGTTCATTGAATGGTGTCATGAGATCTATAGTTTCAAACTCGTGAATAGTTATTTGTTGTTTTGTTTTAATAATGTAATTTGATTTCAG
Intron 2 GTTTGACTTG ... ATATTCACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 78.57 | 6 | 21 | 23 |
| A2 | 100 | 0 | 21 | 12 |
| A3 | 100 | 0 | 28 | 29 |
| A4 | 95.56 | 1 | 25 | 18 |
| A5 | 76 | 3 | 6 | 13 |
| A6 | 72.73 | 3 | 11 | 5 |
| A7 | 83.78 | 9 | 47 | 46 |
| A8 | 78.95 | 10 | 37 | 38 |
| A9 | 94.39 | 3 | 60 | 41 |
| A10 | 97.01 | 1 | 44 | 21 |
>TRINITY_DN46271_c0_g1_i6 from sample A7 / Example spliced isoformAAAAGGGTGATGACATAAGGTTTCTATTTGTGCAAGATGTAGAGGTGAAGGTAAGGTGATTACTAATCCATGCAATAGATGTGGTGGGGATAGTAGAGTTCGGTCCAAGAAAACTATCAATCTCAACATTCCACCAGGAGTGAGTGGTGGCATTACTTTACAAGTTTCTGGCGAAGGACATTCTGGGCCAAAAGGGGGCC
CAGCTGGTGATCTGTATGTGTTTCTTGATGTCAAGGAGATGCCTGGAATTGAAAGAGATGGTGTCAACCTCCGCTCTAAAATTACTATCAACTATACTGAAGCAATTCTTGGAACAGTGGTAAAGTGATTTGGAGCGCAAACTTGT
>TRINITY_DN46271_c0_g1_i2 from sample A7 / Example unspliced isoform:ACACAATGGTTTTGTATTTGAGAAACATCGGCTCTCTTTATCCTAAAATGCTCCTGACTCTATTCTTAAATTTCAGACGAAGTTACGCCTCCTTGTAGTCACCCCATTCTCAAATTGCTGTCCAATGCATTGTTATTACAATCCCTGGCATCAAGAAATCGAATAACAATGGAGTTTACAAAGATTTTGGGTACCCTTGT
CGATATCTGAATGCTCTATGAAAATCCAACTCTACCGGCCACTATCATACGTATTAGATTATTTTAATCATGCAAAGTGTGTCATATGCTCATTCATGGCCGGTCATTTCACGTACACTTAATGGGAGCCATTGCGAACAGACTGGGGCTGCGGTTTCAAATTTACAGTGGGTTTCAAGCTTAAGAACAAAAAACGCATT
GTTTGCTGTTAGTCATGGCTGCCATTTTTTCAGTGGAGATGAAGGGTTTTTCAGACGTGGTTATTTGTTGGATTTTAAGTTGGGCAGAGCTAAACGGGGGAAAATGGTAATTACAATGGCGGCCACTGATTATTATAGTACACTGCAGGTATACAAAACGGCCACCAAACGAGATATTACGGTTTCTTACAGAAAACTTG
CACGTCAGTATCATCCAGATATCAATAAGAGTCCTGGAGCTGAAGAAAAGTTCAAGAAGATTGCTGCTGCATATGAGGTTTTATCTGACGATGAAAAGAGATCTTTGTATGACCAGTTTGGAGAGGCAGGTGTAAGAGGCGCATCTGGAGATTCCTCTGCCAGTCCAAATAGGGTTGATCCCTTTGATCTCTTTGAGTCA
ATGTTTTCTGGAAGGAAAGGAGTTTTTGATGATTTTAGAGATATTGGAGGTACTAGCTTTAAAGTTCGACATGGTGGGCGTCAAAAGGGTGATGACATAAGgtttgacttgtctctgaactttaaggaagcaatttttggagttgtgaaggacattgaaataaatcgcctggagacttgtggaatttgcatggggagcgg
ggcaagatctggcacaaatgttaagatttgtcaagattgtggaggcaagggcaatgtgacggaatcccagaggacgccatatggaatatattcacagGTTTCTATTTGTGCAAGATGTAGAGGTGAAGGTAAGGTGATTACTAATCCATGCAATAGATGTGGTGGGGATAGTAGAGTTCGGTCCAAGAAAACTATCAATC
TCAACATTCCACCAGGAGTGAGTGGTGGCATTACTTTACAAGTTTCTGGCGAAGGACATTCTGGGCCAAAAGGGGGCCCAGCTGGTGATCTGTATGTGTTTCTTGATGTCAAGGAGATGCCTGGAATTGAAAGAGATGGTGTCAACCTCCGCTCTAAAATTACTATCAACTATACTGAAGCAATTCTTGGAACAGTGGTA
AAGGTGCAGACTGTGGAAGGATTCAAGAATCTTGAAATTCCTGCAGGGACACAACCAGGTGAAGAGTTAGCCATGCGAAACATGGGTGTTCCTAAGCTTAGAAATCCTTCAGCACGTGGTGATCACTTGATCGTAGTGAATGTTTCCATCCCCAAAAATCTCAGTGATTTGGAGCGCAAACTTGTTGAAGAACTTGCACA
ACTCAATAGCTCTAGCAGATTTTTCTCAAACTTTTCCCATGGTGGTGACCAATCAATTAAGGGGCAACAAAAGAATAAACTAAGGACAAATAGTAAAGTTAGTGCACAACAAAATGGTAAAGAGTCATCCTTTTGGGATTCAATCAAGAATATGGCAAGGTGGAAAAGATCCAGAAACAAATTTGGTTCCATGAGTTTAC
AAGCAACGGTTTTGGAGTATCCATTTGTTGCGAGTCCCAACTCAACTCTCACTTATCATTTTTTTTCTCCTCCAATGGCATTGTTGGTACTATTTATTTGTATTGTATTTTTGTCTAGAGATATTCAGAAAAGATCCAAACGTTGGAAATCTTCATGTACATTTGATAATCCTGAAAGGAATGCATCGACTTGAAATATG
GAATCTGCATTCATATTGTAGCTTTTATGCATCTTGAGATTAAAATAACTGCAATCCCAAATGAATAATATAATATCATACAAGAGATTTTATAGAGGAATGATATCCTTTCAAGCTAAGAATCTTTTTTCTTTGGTTTTTATGTTTGTGGGCACCTGCCTTTGTAGTTGGAGGATGTGAATTGAGATGCATAAACATAG
TGGACGCAGCTTCATTTTACTTTTTAGAATAAGCATGTATTAACGAGTTAGGTTAGGTTATGACTTAGATTACAGAATATGGCAGTTGTGTTTATTATCCAAGTGCAGCCATACTTTCCTTGGCTTGTAATGCCCAAGCCATGAGGCAATATGTACCGATTTTTCAAGAGATGCGCCTTGAAGTTATCTGGCCAGGGTAC
ATGGAAGTCATTTCTTTGATTTATTATTTCTTGCTCTACCAATATTTATTTCCAGATGTCTTGTAGATGAGACATTCAAGTTCATTGAATGGTGTCATGAGATCTATAGTTTCAAACTCGTGAATAGTTATTTGTTGTTTTGTTTTAATAATGTAATTTGATTTCAG
Intron 3 GTGCAGACTG ... ATTCCTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 66.29 | 5.3 | 13.5 | 7.3 |
| A2 | 48.72 | 10 | 15 | 4 |
| A3 | 81.82 | 1 | 5 | 4 |
| A4 | 47.92 | 6 | 5.3 | 7 |
| A5 | 39.09 | 6 | 2.8 | 5.5 |
| A6 | 81.4 | 3.3 | 15.5 | 13 |
| A7 | 60.28 | 22.5 | 40.8 | 28.5 |
| A8 | 66.63 | 18 | 38.3 | 34.8 |
| A9 | 69.07 | 14.5 | 34.3 | 32.3 |
| A10 | 87.23 | 3 | 22.8 | 19.8 |
>TRINITY_DN105141_c0_g1_i2 from sample A2 / Example spliced isoformCCTTCGACACAATGGTTTTGTATTTGAGAAACATCGGCTCTCTTTATCCTAAAATGCTCCTGACTCTATTCTTAAATTGCAGACGAAGTTACGCCTCCTTGTAGTCACCCCATTCTCAAATTGCTGTCCAATGCATTGTTATTACAATCCCTGGCATCAAGAAATCGAATAACAATGGAGTTTACAAAGATTTTGGGTAC
CCTTGTCGATATCTGAATGCTCTATGAAAATCCAACTCTACCGGCCACTATCATACGTATTAGATTATTTTAATCATGCAAAGTGTGTCATATGCTCATTCATGGCCGGTCATTTCACGTACACTTAATGGGAGCCATTGCGAACAGACTGGGGCTGCGGTTTCAAATTTACAGTGGGTTTCAAGCTTAAGAACAAAAAA
CGCATTGTTTGCTGTTAGTCATGGCTGCCATTTTTTCAGTGGAGATGAAGGGTTTTTCAGACGTGGTTATTTGTTGGATTTTAAGTTGGGCAGAGCTAAACGGGGGAAAATGGTAATTACAATGGCGGCCACTGATTATTATAGTACACTGCAGGTATACAAAACGGCCACCAAACGAGATATTACGGTTTCTTACAGAA
AACTTGCACGTCAGTATCATCCAGATATCAATAAGAGTCCTGGAGCTGAAGAAAAGTTCAAGAAGATTGCTGCTGCATATGAGGTTTTATCTGACGATGAAAAGAGATCTTTGTATGACCAGTTTGGAGAGGCAGGTGTAAGAGGCGCATCTGGAGATTCCTCTGCCAGTCCAAATAGGGTTGATCCCTTTGATCTCTTT
GAGTCAATGTTTTCTGGAAGGAAAGGAGTTTTTGATGATTTTAGAGATATTGGAGGTACTAGCTTTAAAGTTCGACATGGTGGGCGTCAAAAGGGTGATGACATAAGGTTTGACTTGTCTCTGAACTTTAAGGAAGCAATTTTTGGAGTTGTGAAGGACATTGAAATAAATCGCCTGGAGACTTGTGGAATTTGCATGGG
GAGCGGGGCAAGATCTGGCACAAATGTTAAGATTTGTCAAGATTGTGGAGGCAAGGGCAATGTGACGGAATCCCAGAGGACGCCATATGGAATATATTCACAGGTTTCTATTTGTGCAAGATGTAGAGGTGAAGGTAAGGTGATTACTAATCCATGCAATAGATGTGGTGGGGATAGTAGAGTTCGGTCCAAGAAAACTA
TCAATCTCAACATTCCACCAGGAGTGAGTGGTGGCATTACTTTACAAGTTTCTGGCGAAGGACATTCTGGGCCAAAAGGGGGCCCAGCTGGTGATCTGTATGTGTTTCTTGATGTCAAGGAGATGCCTGGAATTGAAAGAGATGGTGTCAACCTCCGCTCTAAAATTACTATCAACTATACTGAAGCAATTCTTGGAACA
GTGGTAAAGGGACACAACCAGGTGCAGAGTTAGCCATGCGAAACATGGGTGTTCCTAAGCTTAGAAATCCTTCAGCACGTGGTGATCACTTGATCGTAGTGAATGTTTCCATCCCCAAAAATCTCAGTGATTTGGAGCGCAAACTTGTCGAAGAACTTGCACAACTCAATAGCTCTAGCAGATTTTTCTCAAACTTTTCC
CATGGTGGTGACCAATCAATTAAGGGGGAACAAAAGAATAAACTAAGGACAAATAGTAAAGTTAGTGCACAACAAAATGGTAAAGAGTCATCCTTTTGGGATTCAATCAAGAATATGGCAAGGTGGAAAAGATCCAGAAACAAATTTGGTTCCATGAGTTTACAAGCAACGGTTTTGGAGTATCCATTTGTTGCGAGTCC
CAACTCAACTCTCACTTATCATTTTTTTTCTCCTCCAATGGCATTGTTGGTACTATTTATTTGTATTGTATTTTTGTCTAGAGATATTCAGAAAAGATCCAAACGTTGGAAATCTTCATGTACATTTGATAATCCTGAAAGGAATGCATCGACTTGAAATATGGAATCTGCATTCATATTGTAGCTTTTATGCATCTTGA
GATTAAAATAACTGCAATCCCAAATGAATAATATAATATCATACAAGAG
>TRINITY_DN105141_c0_g1_i4 from sample A2 / Example unspliced isoform:CCTTCGACACAATGGTTTTGTATTTGAGAAACATCGGCTCTCTTTATCCTAAAATGCTCCTGACTCTATTCTTAAATTGCAGACGAAGTTACGCCTCCTTGTAGTCACCCCATTCTCAAATTGCTGTCCAATGCATTGTTATTACAATCCCTGGCATCAAGAAATCGAATAACAATGGAGTTTACAAAGATTTTGGGTAC
CCTTGTCGATATCTGAATGCTCTATGAAAATCCAACTCTACCGGCCACTATCATACGTATTAGATTATTTTAATCATGCAAAGTGTGTCATATGCTCATTCATGGCCGGTCATTTCACGTACACTTAATGGGAGCCATTGCGAACAGACTGGGGCTGCGGTTTCAAATTTACAGTGGGTTTCAAGCTTAAGAACAAAAAA
CGCATTGTTTGCTGTTAGTCATGGCTGCCATTTTTTCAGTGGAGATGAAGGGTTTTTCAGACGTGGTTATTTGTTGGATTTTAAGTTGGGCAGAGCTAAACGGGGGAAAATGGTAATTACAATGGCGGCCACTGATTATTATAGTACACTGCAGGTATACAAAACGGCCACCAAACGAGATATTACGGTTTCTTACAGAA
AACTTGCACGTCAGTATCATCCAGATATCAATAAGAGTCCTGGAGCTGAAGAAAAGTTCAAGAAGATTGCTGCTGCATATGAGGTTTTATCTGACGATGAAAAGAGATCTTTGTATGACCAGTTTGGAGAGGCAGGTGTAAGAGGCGCATCTGGAGATTCCTCTGCCAGTCCAAATAGGGTTGATCCCTTTGATCTCTTT
GAGTCAATGTTTTCTGGAAGGAAAGGAGTTTTTGATGATTTTAGAGATATTGGAGGTACTAGCTTTAAAGTTCGACATGGTGGGCGTCAAAAGGGTGATGACATAAGGTTTGACTTGTCTCTGAACTTTAAGGAAGCAATTTTTGGAGTTGTGAAGGACATTGAAATAAATCGCCTGGAGACTTGTGGAATTTGCATGGG
GAGCGGGGCAAGATCTGGCACAAATGTTAAGATTTGTCAAGATTGTGGAGGCAAGGGCAATGTGACGGAATCCCAGAGGACGCCATATGGAATATATTCACAGGTTTCTATTTGTGCAAGATGTAGAGGTGAAGGTAAGGTGATTACTAATCCATGCAATAGATGTGGTGGGGATAGTAGAGTTCGGTCCAAGAAAACTA
TCAATCTCAACATTCCACCAGGAGTGAGTGGTGGCATTACTTTACAAGTTTCTGGCGAAGGACATTCTGGGCCAAAAGGGGGCCCAGCTGGTGATCTGTATGTGTTTCTTGATGTCAAGGAGATGCCTGGAATTGAAAGAGATGGTGTCAACCTCCGCTCTAAAATTACTATCAACTATACTGAAGCAATTCTCGGAACA
GTGGTAAAGgtgcagactgtggaaggattcaagaatcttgaaattcctgcagGGACACAACCAGGTGAAGAGTTAGC