sp|F4JNX3|CMKMT_ARATH ----> Calmodulin-lysine N-methyltransferase

Intron 1 GTAAGCCTGA ... GAATTTTCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	77.78	1	3	4
A2	100	0	0	2
A3	100	0	1	0
A4	66.67	1	3	1
A5	77.78	1	4	3
A6	60.71	11	12	22
A7	69.23	8	13	23
A8	51.02	12	8	17
A9	62.79	8	13	14
A10	72.22	5	11	15

>TRINITY_DN45597_c1_g1_i1 from sample A8 / Example spliced isoform

GCAAATGATAAACACACCAAACATGGGCAAAATGCATGTGACAGACACACCAAGCCGCAAACTATACAGGCGTGGTTGGAATGCAATTGGGAGAAATTCAGGTCAAAAATAGGGAAAATTCTGTAGGGAAAATTTTAAAAATCCCTTTTACTTGGTGAATAATTCTTTAGACCTGTGAAAATTTTAAAATTTCCTTTTAC
TCGGTCAATTTCTTTTAGACCACTGAAAGGACGTTTGAAAATTTTATGAATTCCTTTCACTCGGTCAATTATTTTTAGGCCTCTGAAAATTTAACGTAATCCCTTTTGCACGGTTTTTCTGAAAATTTAAAAATTCCCCGACACACAGGATCAACTTGACTCTGGAGAAACAGAAAACTTTTTTTATTATAATACAGTAT
GGCGGCAGGATTAGGGCTAACGTTTCTCATAGCATCTATTCTATGCGAAGAAGCGGGCTTATTAGAAGATGCATCCACACTTGGAAACAAGTCCAAAGGCGACGCTTATGCTTCGCAAGGGTCTCCATGACTGACTGTACAGACGACTGCGGGGACGAAGGCGATGGAGAAACGGCTATAAATCCTGATATTACCAGCAG
AAGCAAAGATGAAGATGCGGCGGAGCAGATGCAGAATGATATTATAAGGATGGAAGAGTATGAGTATACACTTCACAGAAGCCATCACAAAGTGTTGGTGAGGCAGCTTCCCTCAAGAGGCATCTCGTTTCAGATCGATGACCATACACTGGAGATGGGGGTGGAGGACATCTACTTCCTTACAGGACTATGCCAACAAT
GTTAGCTGCAATTCTACCATCGTTCATGGGCTGTACTTGGAGTTAACACTTCATCAATCTCAGCAGTGGACTGATGTCTCTTTGGCTTGAACACAACCTTTGATTTCAATGCCCATCCTATTTTTTATAATTGGCATTGAGGAACTTTAATATGTATTACAGATTACTATCACGAGAAAGTGGGGAGTGGATTTTACAGC
CCAAGTGGGAGTGGGGATCGTCCATTAACTCTGTGTATGTGTTTGTTTACAATGTGCACACATCTGTATCCTTTGTGTTTAAAAATGCATTGAATCTAGAAGGTACATTGAATATGGACACTAACACAGAACCAACAAAACACAATTTGATATGCACTATTGAAGATGCATTTCTTGAGTTTACACAAATTTCCATCTTA
TCAAATATTGGACCGCAGAGCCTTTCAACTCTGAGCTGCATATTATATCTGGATTTAGATGGGTCAGCTAGTTTATCGGTTATCATGCTAACTTTGTCTTGAAATAAATGTTTCCCTTTAGTGGGAACTTGTGAATTCCCCATTGATAACCCCCAAGTAGCATTCCGGTCAAATTGTTTTCATTATGCAAAATGCAGTTA
TACCTCAGTAATTGAATACTGG

>TRINITY_DN45597_c1_g1_i4 from sample A8 / Example unspliced isoform:

ATCAACTTGACTCTGGAGAAACAGAAAACTTTTTTTATTATAATACAGTATGGCGGCAGGATTAGGGCTAACGTTTCTCATAGCATCTATTCTATGCGAAGAAGCGGGCTTATTAGAAGATGCATCCACACTTGGAAACAAGTCCAAAGGCGACGCTTATGCTTCGCAAGGGTCTCCATGACTGACTGTACAGACGACTG
CGGGGACGAAGGCGATGGAGAAACGGCTATAAATCCTGATATTACCAGCAGAAGCAAAGATGAAGATGCGGCGGAGCAGATGCAGAATGATATTATAAGGATGGAAGAGTATGAGTATACACTTCACAGAAGCCATCACAAAGTGTTGGTGAGGCAGCTTCCCTCAAGAGGCATCTCGTTTCAGATCGATGACCATACAC
TGGAGATGGGGGTGGAGGACATCTACTTCCTTACAGGACTATGCCAACAATGTTAGCTGgtaagcctgaagggaggaggccacaacgaggctacacaggatgcaatagctgtatcttcatcttagttttgtttttggatatctcactgacatgagaacatacactagtgtcttgatgtttcaaacctcgtatcttggttg
ttgacgttctcgtgccattattgaattttcagCAATTCTACCATCGTTCATGGGCTGTACTTGGAGTTAACACTTCATCAATCTCAGCAGTGGACTGATGTCTCTTTGGCTTGAACACAACCTTTGATTTCAATGCCCATCCTATTTTTTATAATTGGCATTGAGGAACTTTAATATGTATTACAGATTACTATCACGAG
AAAGTGGGGAGTGGATTTTACAGCCCAAGTGGGAGTGGGGATCGTCCATTAACTCTGTGTATGTGTTTGTTTACAATGTGCACACATCTGTATCCTTTGTGTTTAAAAATGCATTGAATCTAGAAGGTACATTGAATATGGACACTAACACAGAACCAACAAAACACAATTTGATATGCACTATTGAAGATGCATTTCTT
GAGTTTACACAAATTTCCATCTTATCAAATATTGGACCGCAGAGCCTTTCAACTCTGAGCTGCATATTATATCTGGATTTAGATGGGTCAGCTAGTTTATCGGTTATCATGCTAACTTTGTCTTGAAATAAATGTTTCCCTTTAGTGGGAACTTGTGAATTCCCCATTGATAACCCCCAAGTAGCATTCCGGTCAAATTG
TTTTCATTATGCAAAATGCAGTTATACCTCAGTAATTGAATACTGG

Intron 2 GTCAAAAATA ... CGACACACAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	100	0	1	3
A2	100	0	0	2
A3	66.67	2	2	6
A4	100	0	4	2
A5	100	0	2	2
A6	65.76	3.7	4	10
A7	64.71	9	8	25
A8	49.25	17	7	26
A9	87.5	2	7	21
A10	66.71	6.7	7.7	19

>TRINITY_DN36208_c0_g1_i4 from sample A7 / Example spliced isoform

AGATACCAAAAAAATCGCTGCAAATGATAAACACACCAAACATGGGCAAAATGCATGTGACAGACACACCAAGCCGCAAACTATACAGGCGTGGTTGGAATGCAATTGGGAGAAATTCAGGATCAACTTGACTCTGGAGAAACAGAAAACTTTTTTTATTATAATACAGTATGGCGGCAGGATTAGGGCTAACGTTTCTC
ATAGCATCTATTCTATGCGAAGAAGCGGGCTTATTAGAAGATGCATCCACACTTGGAAACAAGTCCAAAGGCGACGCTTATGCTTCGCAAGGGTCTCCATGACTGACTGTACAGACGACTGCGGGGACGAAGGCGATGGAGAAACGGCTATAAATCCTGATATTACCAGCAGAAGCAAAGATGAAGATGCGGCGGAGCAG
ATGCAGAATGATATTATAAGGATGGAAGAGTATGAGTATACACTTCACAGAAGCCATCACAAAGTGTTGGTGAGGCAGCTTCCCTCAAGAGGCATCTCGTTTCAGATCGATGACCATACACTGGAGATGGGGGTGGAGGACATCTACTTCCTTACAGGACTATGCCAACAATGTTAGCTGGTAAGCCTGAAGGGAGGAGG
CCACAACGAGGCTACACAGGATGCAATAGCTGTATCTTCATCTTAGTTTTGTTTTTGGATATCTCACTGACATGAGAACATACACTAGTGTCTTGATGTTTCAAACCTCGTATCTTGGTTGTTGACGTTCTCGTGCCATTATTGAATTTTCAGCAATTCTACCATCGTTCATGGGCTGTACTTGGAGTTAACACTTCATC
AATCTCAGCAGTGGACTGATGTCTCTTTGGCTTGAACACAACCTTTGATTTCAATGCCCATCCTATTTTTTATAATTGGCATTGAGGAACTTTAATATGTATTACAGATTACTATCACGAGAAAGTGGGGAGTGGATTTTACAGCCCAAGTGGGAGTGGGGATCGTCCATTAACTCTGTGTATGTGTTTGTTTACAATGT
GCACACATCTGTATCCTTTGTGTTTAAAAATGCATTGAATCTAGAAGGTACATTGAATATGGACACTAACACAGAACCAACAAAACACAGAACCAACAAAACACAATTTGATATGCACTATTGAAGATGCATTTCTTGAGTTTACACAAATTTCCATCTTATCAAATATTGGACCGCAGAGCCTTTCAACTCTGAGCTGC
ATATTATATCTGG

>TRINITY_DN36208_c0_g1_i2 from sample A7 / Example unspliced isoform:

AGATACCAAAAAAATCGCTGCAAATGATAAACACACCAAACATGGGCAAAATGCATGTGACAGACACACCAAGCCGCAAACTATACAGGCGTGGTTGGAATGCAATTGGGAGAAATTCAGgtcaaaaatagggaaaattctgtagggaaaattttaaaaatcccttttacttggtgaataattctttagacctgtgaaaa
ttttaaaatttccttttactcggtcaatttcttttagaccactgaaaggacgtttgaaaattttatgaattcctttcactcggtcaattatttttaggcctctgaaaatttaacgtaatcccttttgcacggtttttctgaaaatttaaaaattccccgacacacagGATCAACTTGACTCTGGAGAAACAGAAAACTTT
TTTTATTATAATACAGTATGGCGGCAGGATTAGGGCTAACGTTTCTCATAGCATCTATTCTATGCGAAGAAGCGGGCTTATTAGAAGATGCATCCACACTTGGAAACAAGTCCAAAGGCGACGCTTATGCTTCGCAAGGGTCTCCATGACTGACTGTACAGACGACTGCGGGGACGAAGGCGATGGAGAAACGGCTATAA
ATCCTGATATTACCAGCAGAAGCAAAGATGAAGATGCGGCGGAGCAGATGCAGAATGATATTATAAGGATGGAAGAGTATGAGTATACACTTCACAGAAGCCATCACAAAGTGTTGGTGAGGCAGCTTCCCTCAAGAGGCATCTCGTTTCAGATCGATGACCATACACTGGAGATGGGGGTGGAGGACATCTACTTCCTT
ACAGGACTATGCCAACAATGTTAGCTGGTAAGCCTGAAGGGAGGAGGCCACAACGAGGCTACACAGGATGCAATAGCTGTATCTTCATCTTAGTTTTGTTTTTGGATATCTCACTGACATGAGAACATACACTAGTGTCTTGATGTTTCAAACCTCGTATCTTGGTTGTTGACGTTCTCGTGCCATTATTGAATTTTCAG
CAATTCTACCATCGTTCATGGGCTGTACTTGGAGTTAACACTTCATCAATCTCAGCAGTGGACTGATGTCTCTTTGGCTTGAACACAACCTTTGATTTCAATGCCCATCCTATTTTTTATAATTGGCATTGAGGAACTTTAATATGTATTACAGATTACTATCACGAGAAAGTGGGGAGTGGATTTTACAGCCCAAGTGG
GAGTGGGGATCGTCCATTAACTCTGTGTATGTGTTTGTTTACAATGTGCACACATCTGTATCCTTTGTGTTTAAAAATGCATTGAATCTAGAAGGTACATTGAATATGGACACTAACACAGAACCAACAAAACACAGAACCAACAAAACACAATTTGATATGCACTATTGAAGATGCATTTCTTGAGTTTACACAAATTT
CCATCTTATCAAATATTGGACCGCAGAGCCTTTCAACTCTGAGCTGCATATTATATCTGG