sp|Q9SZE4|VP322_ARATH ----> Vacuolar protein sorting-associated protein 32 homolog 2

Intron 1 GTGAGAGCTC ... AGAATTGCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	65.64	39.5	84.5	65
A2	68.73	38.5	104.5	64
A3	70.9	25	66.5	54
A4	58.83	32	47.5	43
A5	60.16	13.3	20	19
A6	64.25	25	33	54
A7	64.33	50.8	90	91
A8	69.91	26.5	56.5	65
A9	66.21	59.3	118	112
A10	68.14	36.3	70	83

>TRINITY_DN115557_c0_g1_i4 from sample A2 / Example spliced isoform

CTCACCCGTCCGAGATTCCCCTTTTTCTCCCCGATCTACGTTTCTTTGTTTCACGGTCTAAATATATGTTCCGAGACGGAAAAATTATTCTACATCTTCCGTCTGTCTCAGGTTTGAATAGCGCCATAGAACGAGTGACCTAGCGAGCAACGGAATCAGGAAATTCCCGTCGACGTGAGCACGGGTCTCGGAAAGCGGCA
TATGCCGGAAATCCTTCCTTTTCTTCTCTTCTGCTTGACGTCAGGAACGCTGTTTAATTCAAGATGTTTAACAAGCTTTTCAAAAAGCCAAAGGAAGAAACTTCGGCACTTGCCACTTTGGACAAGCTTAATGAGACATTAGAAATGTTGGAGAAGAAAGAGAAAGTTTTGCAGAAAAAAATCTCTGTTGAAATTGAAAA
AGCTAAGGAGTTTACACGGCGGAAAAATAAGAGGGCTGCAATTCAATGTCTGAAGAGGAAAAAGTTGTATGAAACTCAAGTAGAGCAGCTTGGTAACTTCCAGCTACGAATACATGATCAGATGATTATGTTGGAGGGTGCAAAAGCAACAACAGAAACTGTAGAAGCTCTCAGAACAGGAGCATTGGCAATGAAAACCA
TCCAAAAAGCAATGAATATAGATGATATTGATAAAACAATGGATGAAGTCAATGAGCACACAGAGAACTTGAAACAGATTCAAGAGGCCCTTGCTACTCCTATTGGTTCTGCAGCAGATATTGATGAGGATGAATTGGAGGCTGAGCTTGAAGAGCTAGAGGGAGCAGAGCTGGAAGAACAGTTATTACAACCAGCAACC
ACAGCACCTTCAACTCAGATACCTGCTGTTCCTATTTCACAACGACCTGTACCAGCTAATCCACAGAGAACCGCTCCTCAAAGTAGAACTGAAGATGATGAGCTTGCTGCTCTTCAGGCAGAGATGGCTTTGTGATCAATAATAAGGTTAAAACCACAAAAGATGACAGTGTACTACTCACTTGTAGCTATATATCCTCA
TTTTCATTTAAAATGGCCAAAATCAGGAACCATGACATTGCAGTTCCTGCTCATGTATAAAAATATCTAAAAATTCCACTTGCATTTTAACGTCACAACATTTTTAGTTTCATTTCTTAGAATTTACAACTTGCCTCTGAAGACAAACTGGGTATAACCCCCAGTTCCATATAAATTGAGAAGCCTTAGCCCCTTGCTTG
GGATGCTGCTATATCTTTATCATAACAATGGATACAAGGCTGTAGAGTGACCTAACTGGATGGGTTTCACTTTGGGGTTGCTTGATACAATATCACTGTCCAATTGGTATTTGATGCCAGGCTCAGGCTGTACTTGGTCTTGCTGAATTTTTCAATTTCGTATTTAGTAACTTTCTAGGCAATGTAAACTTTATCACCTT
GGCTTTTACTGCAAAGTTGTTGAGTTATAATCCAACCATTGACAAAAGTGGGTAGGGCATCAATTCTAGGAAAAATAGTAAAGGCCTGTATGAAGAAATCAAGTTTAAAGGCAATATTTTTATGTTTTTGATAGCTTGTTTGTAGAAACATTATAGCAAGGTGAAAGAATTACCTGCTTATGCAAAAATTGATGCATTGA
TTATACACTTTTCTGAAGAGATTTGCAAGCTTCCTGTCCTACTATAAACAATATGTCCCCCATCTCAAATGTTTGTAAAAACTTTTCTTTCAC

>TRINITY_DN115557_c0_g1_i2 from sample A2 / Example unspliced isoform:

CTCACCCGTCCGAGATTCCCCTTTTTCTCCCCGATCTACGTTTCTTTGTTTCACGGTCTAAATATATGTTCCGAGACGGAAAAATTATTCTACATCTTCCGTCTTTCTCAGGTTTGAAGAGCGCCATAGAACGACTGACCTAGCGAGCAACGGAATGAGGAAATTTCCGTCGACATGAGCACGGGTCTCGGAAAAGGGCA
TATGCCGGAAATCCTTCCTTTTCTTCTCTTCTGTTTGACGTCAGGAACGCTGTTgtgagagctcatccaccatttgtttgcattttacagagggttttatgatcggaattgcaggaattgttaaggttcagtattgatcgagagtttaaggggatctgataaatccgagaattgcagTAATTCAAGATGTTTAACAAGCT
TTTCAAAAAGCCAAAGGAAGAAACTTCGGCACTTGCCACTTTGGACAAGCTTAATGAGACATTAGAAATGTTGGAGAAGAAAGAGAAAGTTTTGCAGAAAAAAATCTCTGTTGAAATTGAAAAAGCTAAGGAGTTTACACGGCGGAAAAATAAGAGGGCTGCAATTCAATGTCTGAAGAGGAAAAAGTTGTATGAAACTC
AAGTAGAGCAGCTTGGTAACTTCCAGCTACGAATACATGATCAGATGATTATGTTGGAGGGTGCAAAAGCAACAACAGAAACTGTAGAAGCTCTCAGAACAGGAGCATTGGCAATGAAAACCATCCAAAAAGCAATGAATATAGATGATATTGATAAAACAATGGATGAAGTCAATGAGCACACAGAGAACTTGAAACAG
ATTCAAGAGGCCCTTGCTACTCCTATTGGTTCTGCAGCAGATATTGATGAGGATGAATTGGAGGCTGAGCTTGAAGAGCTAGAGGGAGCAGAGCTGGAAGAACAGTTATTACAACCAGCAACCACAGCACCTTCAACTCAGATACCTGCTGTTCCTATTTCACAACGACCTGTACCAGCTAATCCACAGAGAACCGCTCC
TCAAAGTAGAACTGAAGATGATGAGCTTGCTGCTCTTCAGGCAGAGATGGCTTTGTGATCAATAATAAGGTTAAAACCACAAAAGATGACAGTGTACTACTCACTTGTAGCTATATATCCTCATTTTCATTTAAAATGGCCAAAATCAGGAACCATGACATTGCAGTTCCTGCTCATGTATAAAAATATCTAAAAATTCC
ACTTGCATTTTAACGTCACAACATTTTTAGTTTCATTTCTTAGAATTTACAACTTGCCTCTGAAGACAAACTGGGTATAACCCCCAGTTCCATATAAATTGAGAAGCCTTAGCCCCTTGCTTGGGATGCTGCTATATCTTTATCATAACAATGGATACAAGGCTGTAGAGTGACCTAACTGGATGGGTTTCACTTTGGGG
TTGCTTGATACAATATCACTGTCCAATTGGTATTTGATGCCAGGCTCAGGCTGTACTTGGTCTTGCTGAATTTTTCAATTTCGTATTTAGTAACTTTCTAGGCAATGTAAACTTTATCACCTTGGCTTTTACTGCAAAGTTGTTGAGTTATAATCCAACCATTGACAAAAGTGGGTAGGGCATCAATTCTAGGAAAAATA
GTAAAGGCCTGTATGAAGAAATCAAGTTTAAAGGCAATATTTTTATGTTTTTGATAGCTTGTTTGTAGAAACATTATAGCAAGGTGAAAGAATTACCTGCTTATGCAAAAATTGATGCATTGATTATACACTTTTCTGAAGAGATTTGCAAGCTTCCTGTCCTACTATAAACAATATGTCCCCCATCTCAAATGTTTGTA
AAAACTTTTCTTTCAC