NA ----> NA
Intron 1 GTAAGTGTTT ... AATGTTGAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 89 | 70.5 | 620.5 | 207 |
| A2 | 87.97 | 54.5 | 446.5 | 128 |
| A3 | 91.3 | 49 | 591 | 159 |
| A4 | 91.79 | 29.5 | 367.5 | 120 |
| A5 | 85.72 | 40.5 | 262 | 85 |
| A6 | 74.96 | 195 | 646.5 | 206 |
| A7 | 80.62 | 270.5 | 1268.5 | 364 |
| A8 | 81.2 | 228.5 | 1101.5 | 417 |
| A9 | 80.11 | 172.5 | 766 | 323 |
| A10 | 81.16 | 261.5 | 1261 | 365 |
>TRINITY_DN43327_c3_g2_i11 from sample A8 / Example spliced isoformGTTTGCGTCGCTTGTGACAAAAGAGGAGGTCATATTTTGAAATACAATTTGAATTTCGTATATCAAGGATGCGGTGGAGCCAAGGCCATTACATCAAGGATGCGGTGGAGCCACGGCCAGGATGCGATTCAATTTTGTGTGAATCGAGAATGGATTGATGAGTGGCTCATCAGATGAGATGGGTGAATTAGAGAAAACAT
TCGAAGATCCCATCTACCAGGGATACGGGACCATTTTAGATTCTAAAGCTACCGAGTCTTTGGTGGGTTAATGCAATCTTCTAAATCTCTTCAAAATAGTGTTAGACATTTTTTGATGCGATCTTTTCTATATCTCTTCAAATTCGATGTTGAAATTTTTTGGTCTATTGAGATGGGTGAATCAGAGAAAACATTGGAAG
ATCCCATCTACCAGGGATACAGGACCATTTTAGATTCTAAAGCTACCGAGTCTTTGGTGGGTTAATGCAATCTTCTAAATCTCTTCAAAATAGTGTTAGAAATTTTTTGATGTGATCTTTTCTATATCTCTTCAAATTCGGTGTGGAAATTTTTTGGTCTTTTGAGGATTTTTCCAGGTCGTTTAGTGTTTTCAAGTTTT
TCAGTTTTTTTAATACAGTAGCTTTATAGTTGCCTGGTTTGCCCATGAATTCTTTGGATTTCCAGATTTAACTTACAAGTTTTAGATTTAACGATTTATATCCTGGCAAAACAGTATCTATAAACTTGGGTTTATATGCATCTATGTGTTGAAGCGATACGTGAATTTTAAAATTCAATCTGACGATCTGTTTTACATGG
ATTGAATGTTCACATAGCTGTGGGAAATCTGACTTGACCTGGCATAGGGTATTATGCTCCTCTGATCTGATCTGACCTGAAGTCTCTATGCTGCATAAATGAATATGATCTGACCTGAAGTCTCTATGCTGCATAAATGAATATGATCTGACCTGAAGTCTCTATGCTGCATAAATGAATCTGATCTATGCTCCTGTCTC
TGTCTCATATGAATGCATCTCTATGAATCTCACTGGCTGTTGTTTTACAAAGAAGAGCAAAGCTTTGACAAATTGACAAAGCGGTTCTTGTTACACCTTTTTTATTTTATTTTTTTGGCAGTCGGCATGCTTCTTTTGTTTCTACTAGTACTAGAGTTTTCCTTACATTGAGAATCACTATTGTATTAGAGATACTTGGA
TTCTATCATTTACACATCTGAGTTCAACGAAAATTATATTCAAATGCCAACGTAAAGTGACAAAGCAAACAGATCAATGGCCGGTGGATTTTTTGTGGGTTTATTTGGAAAGTAAAAAAGATTGCAATGCAATGCATCTTGCATCGACAGCTGCTTCCATTTCATCAAGTATTTAGGAGAAAGTCACTGTTGTATACACT
GAGAATGCTCTGTCTTATATGATTCAACCTTCATTCCAATTGTGTGTTTTCCCAATCTCTTCTTCAAGAAGAGTCATGTCAAAAATTGTGTAGCTGTATATGTATGAATGTCTAAGGCATAATCTACCAGCCTAGCATAGTTGATGCACAAGTCATGCTTGTGTAACTTATGTGGGAAATGTTGTGGATGAGGTATATGC
CCTTCACTTATTTGAACTCTGAAAACCTGTGATGAAATTGGAGTCATTTATACATCTGAGTTCAGAGGAAATCATAGTTAAATGACAATGTAAATTATAAAGCAAACATATCAGTGACCAGTGGATCTTTTTTGTGGCTTTATTTGGAAAATAAAAAATATTGCAATGCTTCTTGCATTGACAGCTTCTTCCATTTCATC
AAGTATTTAGGACAAAGTTACTATTGTATAAACTGAGAATGCTCCCTCTTACACGAGTCAACCTTCATTCCTA
>TRINITY_DN43327_c3_g2_i9 from sample A8 / Example unspliced isoform:GTTCGGTCTGTGTGGTGTTCTGTCTGTGTGTGGTGGTCGGTCGGTGTGTGTTTTGGGTAGCTTGTGACAAAAGAGGAGGTCATATTTTGAAATACAATTTGAATTTCGTATATCAAGGATGCGGTGGAGCCAAGGCCATTACATCAAGGATGCGGTGGAGCCACGGCCAGgtaagtgtttcttgtttctagtagcttctg
tcttattagcttatgcttctctgttctgacctgacccgaattctctatgctcctgtctctttctcatatgaagtgcctctttatgcataaatgaatcctgaagtctctgtgctcctgtctctgtctaaattttcttaaaaatatatagatataccattttgattattgaaagattttaacattttgaaaatcttagtaaa
cacaacaaaaaaaggttggttcaaaaaatcctcgcatgattcaatgttgaagGATGCGATTCAATTTTGTGTGAATCGAGAATGGATTGATGAGTGGCTCATCAGATGAGATGGGTGAATTAGAGAAAACATTCGAAGATCCCATCTACCAGGGATACGGGACCATTTTAGATTCTAAAGCTACCGAGTCTTTGGTGGGT
TAATGCAATCTTCTAAATCTCTTCAAAATAGTGTTAGACATTTTTTGATGCGATCTTTTCTATATCTCTTCAAATTCGATGTTGAAATTTTTTGGTCTATTGAGATGGGTGAATCAGAGAAAACATTGGAAGATCCCATCTACCAGGGATACAGGACCATTTTAGATTCTAAAGCTACCGAGTCTTTGGTGGGTTAATGC
AATCTTCTAAATCTCTTCAAAATAGTGTTAGAAATTTTTTGATGTGATCTTTTCTATATCTCTTCAAATTCGGTGTGGAAATTTTTTGGTCTTTTGAGGATTTTTCCAGGTCGTTTAGTGTTTTCAAGTTTTTCAGTTTTTTTAATACAGTAGCTTTATAGTTGCCTGGTTTGCCCATGAATTCTTTGGATTTCCAGATT
TAACTTACAAGTTTTAGATTTAACGATTTATATCCTGGCAAAACAGTATCTATAAACTTGGGTTTATATGCATCTATGTGTTGAAGCGATACGTGAATTTTAAAATTCAATCTGACGATCTGTTTTACATGGATTGAATGTTCACATAGCTGTGGGAAATCTGACTTGACCTGGCATAGGGTATTATGCTCCTCTGATCT
GATCTGACCTGAAGTCTCTATGCTGCATAAATGAATATGATCTGACCTGAAGTCTCTATGCTGCATAAATGAATATGATCTGACCTGAAGTCTCTATGCTGCATAAATGAATCTGATCTATGCTCCTGTCTCTGTCTCATATGAATGCATCTCTATGAATCTCACTGGCTGTTGTTTTACAAAGAAGAGCAAAGCTTTGA
CAAATTGACAAAGCGGTTCTTGTTACACCTTTTTTATTTTATTTTTTTGGCAGTCGGCATGCTTCTTTTGTTTCTACTAGTACTAGAGTTTTCCTTACATTGAGAATCACTATTGTATTAGAGATACTTGGATTCTATCATTTACACATCTGAGTTCAACGAAAATTATATTCAAATGCCAACGTAAAGTGACAAAGCAA
ACAGATCAATGGCCGGTGGATTTTTTGTGGGTTTATTTGGAAAGTAAAAAAGATTGCAATGCAATGCATCTTGCATCGACAGCTGCTTCCATTTCATCAAGTATTTAGGAGAAAGTCACTGTTGTATACACTGAGAATGCTCTGTCTTATATGATTCAACCTTCATTCCAATTGTGTGTTTTCCCAATCTCTTCTTCAAG
AAGAGTCATGTCAAAAATTGTGTAGCTGTATATGTATGAATGTCTAAGGCATAATCTACCAGCCTAGCATAGTTGATGCACAAGTCATGCTTGTGTAACTTATGTGGGAAATGTTGTGGATGAGGTATATGCCCTTCACTTATTTGAACTCTGAAAACCTGTGATGAAATTGGAGTCATTTATACATCTGAGTTCAGAGG
AAATCATAGTTAAATGACAATGTAAATTATAAAGCAAACATATCAGTGACCAGTGGATCTTTTTTGTGGCTTTATTTGGAAAATAAAAAATATTGCAATGCTTCTTGCATTGACAGCTTCTTCCATTTCATCAAGTATTTAGGACAAAGTTACTATTGTATAAACTGAGAATGCTCCCTCTTACACGAGTCAACCTTCAT
TCCTA
Intron 2 GTAAGTGTTT ... AATGTTGAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 90.42 | 86 | 812 | 207 |
| A2 | 90.42 | 64 | 604 | 130 |
| A3 | 92.95 | 62 | 818 | 159 |
| A4 | 92.38 | 41 | 497 | 117 |
| A5 | 87.44 | 49 | 341 | 77 |
| A6 | 78.49 | 245 | 894 | 194 |
| A7 | 83.49 | 350 | 1770 | 337 |
| A8 | 83.74 | 295 | 1519 | 397 |
| A9 | 83.51 | 204 | 1033 | 308 |
| A10 | 83.41 | 349 | 1755 | 348 |
>TRINITY_DN43327_c3_g2_i11 from sample A8 / Example spliced isoformGTTTGCGTCGCTTGTGACAAAAGAGGAGGTCATATTTTGAAATACAATTTGAATTTCGTATATCAAGGATGCGGTGGAGCCAAGGCCATTACATCAAGGATGCGGTGGAGCCACGGCCAGGATGCGATTCAATTTTGTGTGAATCGAGAATGGATTGATGAGTGGCTCATCAGATGAGATGGGTGAATTAGAGAAAACAT
TCGAAGATCCCATCTACCAGGGATACGGGACCATTTTAGATTCTAAAGCTACCGAGTCTTTGGTGGGTTAATGCAATCTTCTAAATCTCTTCAAAATAGTGTTAGACATTTTTTGATGCGATCTTTTCTATATCTCTTCAAATTCGATGTTGAAATTTTTTGGTCTATTGAGATGGGTGAATCAGAGAAAACATTGGAAG
ATCCCATCTACCAGGGATACAGGACCATTTTAGATTCTAAAGCTACCGAGTCTTTGGTGGGTTAATGCAATCTTCTAAATCTCTTCAAAATAGTGTTAGAAATTTTTTGATGTGATCTTTTCTATATCTCTTCAAATTCGGTGTGGAAATTTTTTGGTCTTTTGAGGATTTTTCCAGGTCGTTTAGTGTTTTCAAGTTTT
TCAGTTTTTTTAATACAGTAGCTTTATAGTTGCCTGGTTTGCCCATGAATTCTTTGGATTTCCAGATTTAACTTACAAGTTTTAGATTTAACGATTTATATCCTGGCAAAACAGTATCTATAAACTTGGGTTTATATGCATCTATGTGTTGAAGCGATACGTGAATTTTAAAATTCAATCTGACGATCTGTTTTACATGG
ATTGAATGTTCACATAGCTGTGGGAAATCTGACTTGACCTGGCATAGGGTATTATGCTCCTCTGATCTGATCTGACCTGAAGTCTCTATGCTGCATAAATGAATATGATCTGACCTGAAGTCTCTATGCTGCATAAATGAATATGATCTGACCTGAAGTCTCTATGCTGCATAAATGAATCTGATCTATGCTCCTGTCTC
TGTCTCATATGAATGCATCTCTATGAATCTCACTGGCTGTTGTTTTACAAAGAAGAGCAAAGCTTTGACAAATTGACAAAGCGGTTCTTGTTACACCTTTTTTATTTTATTTTTTTGGCAGTCGGCATGCTTCTTTTGTTTCTACTAGTACTAGAGTTTTCCTTACATTGAGAATCACTATTGTATTAGAGATACTTGGA
TTCTATCATTTACACATCTGAGTTCAACGAAAATTATATTCAAATGCCAACGTAAAGTGACAAAGCAAACAGATCAATGGCCGGTGGATTTTTTGTGGGTTTATTTGGAAAGTAAAAAAGATTGCAATGCAATGCATCTTGCATCGACAGCTGCTTCCATTTCATCAAGTATTTAGGAGAAAGTCACTGTTGTATACACT
GAGAATGCTCTGTCTTATATGATTCAACCTTCATTCCAATTGTGTGTTTTCCCAATCTCTTCTTCAAGAAGAGTCATGTCAAAAATTGTGTAGCTGTATATGTATGAATGTCTAAGGCATAATCTACCAGCCTAGCATAGTTGATGCACAAGTCATGCTTGTGTAACTTATGTGGGAAATGTTGTGGATGAGGTATATGC
CCTTCACTTATTTGAACTCTGAAAACCTGTGATGAAATTGGAGTCATTTATACATCTGAGTTCAGAGGAAATCATAGTTAAATGACAATGTAAATTATAAAGCAAACATATCAGTGACCAGTGGATCTTTTTTGTGGCTTTATTTGGAAAATAAAAAATATTGCAATGCTTCTTGCATTGACAGCTTCTTCCATTTCATC
AAGTATTTAGGACAAAGTTACTATTGTATAAACTGAGAATGCTCCCTCTTACACGAGTCAACCTTCATTCCTA
>TRINITY_DN43327_c3_g2_i2 from sample A8 / Example unspliced isoform:GTTCGGTCTGTGTGGTGTTCTGTCTGTGTGTGGTGGTCGGTCGGTGTGTGTTTTGGGTAGCTTGTGACAAAAGAGGAGGTCATATTTTGAAATACAATTTGAATTTCGTATATCAAGGATGCGGTGGAGCCAAGGCCATTACATCAAGGATGCGGTGGAGCCACGGCCAGgtaagtgtttcttgtttctagtagcttctg
tcttattagcttatgcttctctgttctgacctgacccgaattctctatgctcctgtctctttctcatatgaagtgcctctttatgcataaatgaatcctgaagtctctgtgctcctgtctctgtctaaattttcttaaaaatatatagatataccattttgattattgaaagattttaacattttgaaaatcttagtaaa
cacaacaaaaaaaggttggttcaaaaaatcctcgcatgattcaattttgtgtgattcaatgttgaagGATGCGATTCAATTTTGTGTGAATCGAGAATGGATTGATGAGTGGCTCATCAGATGAGATGGGTGAATTAGAGAAAACATTCGAAGATCCCATCTACCAGGGATACGGGACCATTTTAGATTCTAAAGCTACC
GAGTCTTTGGTGGGTTAATGCAATCTTCTAAATCTCTTCAAAATAGTGTTAGACATTTTTTGATGCGATCTTTTCTATATCTCTTCAAATTCGATGTTGAAATTTTTTGGTCTATTGAGATGGGTGAATCAGAGAAAACATTGGAAGATCCCATCTACCAGGGATACAGGACCATTTTAGATTCTAAAGCTACCGAGTCT
TTGGTGGGTTAATGCAATCTTCTAAATCTCTTCAAAATAGTGTTAGAAATTTTTTGATGTGATCTTTTCTATATCTCTTCAAATTCGGTGTGGAAATTTTTTGGTCTTTTGAGGATTTTTCCAGGTCGTTTAGTGTTTTCAAGTTTTTCAGTTTTTTTAATACAGTAGCTTTATAGTTGCCTGGTTTGCCCATGAATTCT
TTGGATTTCCAGATTTAACTTACAAGTTTTAGATTTAACGATTTATATCCTGGCAAAACAGTATCTATAAACTTGGGTTTATATGCATCTATGTGTTGAAGCGATACGTGAATTTTAAAATTCAATCTGACGATCTGTTTTACATGGATTGAATGTTCACATAGCTGTGGGAAATCTGACTTGACCTGGCATAGGGTATT
ATGCTCCTCTGATCTGATCTGACCTGAAGTCTCTATG