NA ----> NA
Intron 1 GTAATAACCT ... TCTTTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 35.29 | 22 | 2 | 12 |
| A2 | 9.09 | 20 | 0 | 2 |
| A3 | 17.24 | 24 | 0 | 5 |
| A4 | 41.18 | 10 | 1 | 7 |
| A5 | 40 | 9 | 0 | 6 |
| A6 | 0 | 35 | 0 | 0 |
| A7 | 0 | 60 | 0 | 0 |
| A8 | 0 | 23 | 0 | 0 |
| A9 | 0 | 26 | 0 | 0 |
| A10 | 0 | 18 | 0 | 0 |
>TRINITY_DN117292_c1_g1_i1 from sample A1 / Example spliced isoformAGTGCTTTTCGTCATAATGTTGAGTCTGTTTCTATAGGTATGCAGGCTCACATGCTTGCTTTTATGGCCATTTTGGGGTGGCATTCTCCTGGGACTCCTTTTGTGCATGTGCTGGAACTTTTCTGTCCCTTGATGGACTGATTTGATCATTAAGTAATAAATGCAACTATTAAAAAAGTGATCAAGTTTCTCTCTAAGGA
AACAGGACCGATTCATTTCTGGGAATTCTCACATTCTCATATATTGACCGTCCTCCTTCGAGGGAGGTAGGAGTAATCTAGCAAGGAATTACAATAATTGCACAGAAAGCACTATGCTATTTTGTTTACAATAAAAAGCTTTATGAAAAGATCCAGTAGGAAGGAATCTAGGCCTCTATAATATTGGTGGCAAGGGTTAC
TTTGATTCCCTTATACATTGCTTTAAACTTTTAAAGTATTTTCTTTATGGATGTTTTCTCATCTTTTCAACTACTTGGCAGGCATTGCGGAGAGCATTGACAGACAAGACTTCTGGGGATATAAAATCTACTGCATACCCCATGACACCAATTGGAATAATACAATCTTGTTTTTGGACAAGAAATGGAACACCACGACA
ACCATTACTTGTTCCTCATGCTAGGGCATGCTTGATTTTGCATTCTGGTGGAATTCCTCAAGCTACACTGGAAGGGCTTGCAGAATACTCTCATTGTTGGATTCTATATGTTTTCCATAAGAATACAGATTTACCGAGGTTGTGGGAGCAACAAGGACATACGAACTTCAAAGCAAAGGTGAGAGTGCCAAGGCTACAAG
GTGGTAAGATGGGAGTACTTGCAACACGATCTCCTCATCGACCTTGCCCCATTGGCCTTTCTGTTGCAAAGGTGGAAGCTGTACATGGGCGTATGCTGCTTCTGTCAGGTGTTGATCTAGTTGATGGGACGCCTGTACTTGATATCAAACCATACTTACCATATTGTGATAATGTCCAAGGAGCCAAAGTTCCGGATTGG
ATCATGACAGATGGTGTCGATGATCCATTAGCTGTGGCATCTGTTATCTTCTCCCCAGACTTCTCAATTAGTCTTGCAAGTTGCTGGGAGGCACAGGGAAATCAATCCTTGTACTCATCTCCAAATGAATTTCAAATTTTGATTGAGCAAATACTTTCAAGGGATGTACGATCTCTTTCCCAACGGTTGCGGCCTCACAA
AACAACGTTTGGTTACTCCAATATGGATATATATGAACACAGTGGCAATTGGACCTATATATCACAGGAGGATAACTGCATGGATGAAGACGGTTATTCTACAGCAATCACATCAGTGGCGACAACTGACAGGGAGAGCTTTTCATATTCTGACAAAGATATAGTTGAATATCACATAATTGTGGAGGGGTTAGATGTGT
CATATACAATTGATGATTATGCTAATGTTGTGATCCACCAAGCTGCATTGACCAATGATGTTAGAAACGATAGTGTTCATGAATGCAATCATACTATTTGGTCAAATGTAGTAGGTAAACTCCCTAATCATGTAGCATAAGAAAGTTCCATTGGTATCAATAGGTCAAAAGTACTATGGGTGCATGCCTATGTGAAGGTG
CCTTTAGCATATAGGATTAGTTATGCAATTTATGCATGAGCTACCTTTCACACATTACCCAGTGTTTTATGCTCACAGGAGGAGGTGGAATTCAGATGAATAGTATTTTTTCAAGAGCCGTTTTCCATTAATAGTTTTTGTGAAACCGAGTAAAGAGAAGGGGAATGATTTGCCTATCCTATTCTTGTTGGCTGCATGTT
TTTCAGTCAATGTTCAGCCTATTGATCAAGGTGACAGCTTTTGTAAGTGATCACTTTGGCAAGGCGTAACTTCCATTTGAAATAGATCCACTGTACTTTCCTGTAGATGATGAGGAAATGAGATAAAGTTTCATATAGTATGGAAAACTTTCTTGGTTGGAAACGCCACTTAATGTGAAATTTTGTTGGTTGAAAATACC
ATTTTGTAAGAAGTGGATAAAATTTGTCAGTGCAAGAAATGTATGGAATACAACTACAAATCTATGGCATACTACCGTGATAAGTTGCCAGCTGCACACCTGTATCTACCAGATATGCCTGTACCCATCGTCTGGCAGGTCAGAGAGTTTGTTTTTCCTTCTTTCCCTTTTCAATGCTTAACAAAATAGATACCGATTAT
ATTCATACCCAAAGACAGGT
>TRINITY_DN117292_c1_g1_i8 from sample A1 / Example unspliced isoform:ATCTAGTTGATGGGACGgtaataaccttttacattttatattcggcagtggatcaattagggaattctgaattttgttcagcaatggattttaattttgttatgtaactattttttagataaacaggtaatgataggtacatcaatggacttttatacaagttgattaactgtattatcttttgcagCCTGTACTTGATA
TCAAACCATACTTACCATATTGTGATAATGTCCAAGGAGCCAAAGTTCCGGATTGGATCATGGTGCATTCTCTGTTGCCCTCATTCCCAGCAACCTTTTATATTTATAACATTCACACATTATCTTTTGTGTTCTTGTTTGGAAGAATGCCAGACTTTTTGTCAATGAAAAAAGTAGTTATGAAAGGTTGTTACAACTTC
AAGCAAAACCCAATATCCAGGATGAATGTAATGTACAAAAAATTTCTTCATCAAGCAACATTAAGGGACTGAAGTGAAGCCCTAAGAAACACTACTTTAGATACTTGCTTTGACAATCATATAGAATAAGTAAACAAATTAATATCAGATTCTCTGCGGTATCTGGCATTAGCTGCCTTTGCAGTTGAGAGTTTGTGTTT
AATAGGTCGAATTCTCTTGGATGGCACTTCTCTTGGCTTCCTTTCCTAGACATTTTAGCCATGAATCACACCTGAGATGGGTCATTGGTCCTGCAGCTTTGGTTATTTATGGGTTGTTTGCATAAAGTAGTTTAACCTTCCATTTTAGAATTTCCTACATTTTTTCCTAATAGTACAAAATGGAACATATCATATTTTGT
ATGAAGTGCTTGTAGCCACAACTTTTCTCACCTGGGATCCTGCAATCATGAACAGGATTAATTATATAAATTTCTTTTGCTCAAACAAGCATGAAAAACAATTCTCTAACCTCTTCTTAAATTATTGTAGTATGTGTTTTTATTCC