NA ----> NA

Intron 1 GTTCTTTTTC ... GAGGTGAAAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	38.46	16	4	10
A2	10.53	17	4.7	2
A3	11.76	15	5.3	2
A4	17.65	28	9.3	6
A5	18.75	13	4.7	3
A6	25	54	6.7	18
A7	24.73	70	6.7	23
A8	26.92	57	12.7	21
A9	24.73	70	10.7	23
A10	20.55	58	6	15

>TRINITY_DN41665_c6_g1_i2 from sample A6 / Example spliced isoform

CGATTTGATCCCAAGTCATGAATGCAATGATGGCTCCACCTCAACCACTACACCGTAAGAAAGACCAAAGCTCCGAGCAAGCAGTCTGGTTTAGTTTCCACTCGGAGTAGGACATATTCAGAATTGGACTGGAGGATATGAAAGAATGAATAGTGAATTTGACAGAAGAATACCGAGTGGAAGAAGAATGGGATTCAAAC
GTTTCCTCTGATAGCTGGGTTTTCTTTACGGACATCGATGAAAGATAGAGGAACGAAAGCTGCCATGTTATCCGACTGATATGAACGAATAACATCGGGGTAAAGTGAATGGAGGACTCCGTGGTCATATGGGAAATATGGTTGTCGGTGTTGATGTTAGGAATGCCTCTGTTGCACACAATTTTAGAGTGCAGAAGAAG
AGGCAGAATTCGTGTGATGCGCTGGTGGATGATGTGTTTTCTAATTGTATTGATTTCTCTGGGCGCCGTATTCTTGTGTGGGATAGCGGGATTCTTCATCGCTCATTTCTCTATAATAAAGCCTTCTCCCATCTCAACACAATGCAAAATTCTCACCAATAGTGTAGATCTTCGGTCCTCCAAGATTTGTCAGCTTGGCT
TAATGAATTATAATGCCAAGAATGTTTTGATAGCTTCCGACCGAACCAGATATCCGTGCCATTATGATTATTATTGGGCTTCTGTGTTTCAGGTAGAATACATCCCGTATGCATCAAGTCGACCAATACAAGCAGCAGCTGAGGCCCCAAAGGAGGCTCTCCCACTTGATTGTAGGCCCAGTTTCAGCTCTGCCTGGAGA
ACCAAAGATGAATTCAAGGTGAACGAGACATATCATTGCAAGTATACTCCTGGAAAATCCAAGGTGGATATTGTTGGGGATAATTTTTTCAATTGCTTTGCAAAAGAACCCTCTATTTATGAGTTGATACGTCGAGTAACATTACTGTGAGTATCTTGAATCTTCTAGATGTTTGAAAAAAGATACACTCTTGAGGGTGT
TCATAATTGCTGAAGCTGGACCTGATTCTTTGACAAGATTATTTGGACCAATCTCTTGGTTGCTATATTTAGACTTGTTTTAGTTTTTGTACTGGTGGAAAACACACATCTTATCTCACATTTCTAATCCATAAGTTTATATTGCA

>TRINITY_DN41665_c6_g1_i3 from sample A6 / Example unspliced isoform:

GGAGAACCAAAGATGAATTCAAgttctttttctgaaccgtgacatgcaatgttgctaagggtcagaatctcagcaaagattcaatttgaggtggcactcctctgaactagggattttgacagttcctgttcactattaaattgacagaagaatcctgcaatgtatataagaatctatggaataatgataattgataaact
ttgagatgcttacaaagagctttgtgaccgaatgcttatatgcattaactagtcatgaggtgaaagGGTGAACGAGACATATCATTGCAAGTATACTCCTGGAAAATCCAAGGTGGATATTGTTGGGGATAATTTTTTCAATTGCTTTGCAAAAGAACCCTCTATTTATGAGTTGATACGTCGAGTAACATTACTATTTT
GGCACTGGGATCAGTTCTCATTCTCTAAAAAGAGCAGTGCTGCAAATTTATTGTGGAAACTAGTGGCATCTATATTTGTTGGCATGTCTTTATCCATATTAGTGGCGTGCTTTGCCAAGAACATAAGGGGGTTGAGATTTATGCATCTTGGTGACCCAGACTTTAGGAAAGCTGACGCTGCATCCTTTGAAGCAAAGCTG
CAATTCTTTTGCATTTTTACTGCATCGTTGTTTGTTGTTATCTGGCTAGGTGGTCAGCGTGAAGAGTTTTCACGTCTTTACCAGGTTTTTCTCAGAGGTTATTTAGAAGGATAGCTGCAATTCTTTTGCATTTTTACTGCATCGTTGTTTGTTGTTATCTGGCTAGGTGGTCAGCGTGAAGAGTTTTCACGTCTTTACCA
GGTTTTTCTCAGAGGTTATTTAGAAGGATCACGTTCTAAAAAGTAGTGGGACAATTTGCAAAAAGGCCTCGAGACTAGATGAAAAAAGAGTTGAGAACAACTTCGCTGTGCAACACTTACAAAGATTTTCCAGCTGAGTCTGCTATTGAGTTTATGATATACCCTGTGTATATAGCTTTCCGTGATTTGTAGTTGCATTC
ATTGTATCCGACGGTGCTTACTGTCTTGATACTTACTATTGAATGAGCAAATGTACACAACTAAGGATTTTTGAAATAATTAGGTTATGTGCAATGCGTTTGACATGACCAAAATCTTGGATTTTTGAAGTTATGAGGTTATGTGGAATTCATTTGACATGACCAAATTCTTGGTTTGAATTTCTCAGAGCAAATGTGCA
CAGCTAATAATGCATTTGACATGACCAAAATCTTGGTTTGAATTTATCTGTAAGCCAATTTTATTGCACCAACAAAAGTGAAGTGCTTTATAGCCCCAATTGGGGGGTTGGTGGATCCATCAACTTTGTGCATGTGACGGTGCATTGGATCTAGAAGATGGATCGGGTGTATTGAATAAGAGAACAGATGTGTTTGATAT
GCAGTTGGAAGTTGCATATTAGTTAGTTCACACAAATGGCAAATATATTAACTACTGTAATATACCAAGTATTTGGTTTTTCCTCTTGTAAAAAAAAAA