sp|P94078|MANA1_ARATH ----> Alpha-mannosidase At3g26720
Intron 1 GTAAGAAGAA ... TTTTCAAAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 24.32 | 42 | 8 | 19 |
| A2 | 20.83 | 38 | 6 | 14 |
| A3 | 22.52 | 43 | 3 | 22 |
| A4 | 24.21 | 36 | 7 | 16 |
| A5 | 21.35 | 35 | 6 | 13 |
| A6 | 33.33 | 2 | 0 | 2 |
| A7 | 19.54 | 35 | 7 | 10 |
| A8 | 0 | 3 | 0 | 0 |
| A9 | 18.37 | 20 | 5 | 4 |
| A10 | 26.98 | 23 | 5 | 12 |
>TRINITY_DN102106_c0_g1_i1 from sample A4 / Example spliced isoformAATTGCACCATCATTAGAGAAAGGCCGCTTAAATCCTACACAACTGCACCATCATAAGAGTAAGGCCAGCGACCCTACCTTATGGGACCAACTCTCACGAGACCAACTCTCCAAGTTGCATAATGGAGCACACTACTGTAGCTTTCAATGCCGTGAACATTCTTGTTAATTTTTATTACTCAGGAAGTGATTTAGCTCTG
TCAAGTGAACATCTTTATTAATTTTTTTTACTCAAAGCTGATTTAAGTATTGACAACAACCATGACCAAATCTCTTATTTGTCCCAACATCTGCACAGAAACCCCAATAGAGCAACCTTAACAGGGTACACATCAAATTATACGGACTATTAACTTCTGCTGCTGAGGTCTTCTCTACCTACTTCGTTGAGGAAAAGACT
ATAAATGTTGCAGGATCCATGAAAGCAGCCGCAGCATACATTGGCGACATGGGCGGGTCAAAGCTTCAATGGCTTTGCATTTGCAGCTTACTGATCAATCTATGTTTCTGGCAATCCCTGGCAATTGAGTATAACACCAAAGCAGGGCCAGTGGAAGGAAAATTGAATGTTCATTTAGTTCCTCACACGCATGACGATGT
GGGATGGCTCAAAACAGTCGATCAATACTATGTTGGCTCTAACAGTTCCATACAGGCGGCAGCAGTAGAATACATCCTGGATTCATTTATCAATGCTTTGCAAGAAGACCCAAATCGCAAGTTTATTTATGTTGAAATGGTGGTGGAGGCAACAAAGTAAGGAGAAAAGGGAAATTGTTAGAAAGCTTGTTGAATCTGGC
CAACTTGAATTTATAAATGGGGGATGGTGCATGCATGATGAAGCATCTACTTATTATGTGGACATGATAGATCAAACAACCCTTGGGCACCGATTTATCAAGAAAGAGTTTGGAAAAGTTCCTCGCATTGGATGGCAGATTGATCCCTTTGGACATTCCGCTATTCAGGGTTATCTTCTAAGTGCAGAGGTTGGATTTGA
AGCATTGTTCTTTGCGAGGGCTGATTATCAAGACATTGCCAAAAGAAGAGAAGATCGTACTATGGAGATGATTTGGCGTGGTTCTAAGTCACTTGGGTCTTCTGCACAGGTTTTCACTGGAATTCTTGCACACCATTATGATCCTCCTCCTGAATTTCGATATGACATTAAAACTACAGAAACAACCATCCAGGATGATC
CCTTTCTTTATGATTATAATGTTGAGCAACAGATCGATCGTTTTGTTCAGCTTGCTGAAGAGCAGGCCAAAGAATTTCGAACAAATCATATCATGTGGACAATGGGTGAAGACTTTGCATATGAAAATGCAAATACGTGGTTCAAGCAGATGGATAAACTTATACATTATGCAAATAAGGATGGGCGTGTGAATGCATTT
TATTCAACTCCAACGATCTACACTACTGAAAAAAATGCTGCCAATGAGAGCTGGCCTTTGAAGACAGACGACTTTTTCCCGTACGCAGATTGTGAACATTGTTACTGGACAGGGTACTTCACCAGTCGACCTGCTCTAAAAGGTTATGTGAGGAAACTCTCTGGGGTTTTGCAGGCAACAAGACAGTTGGAGTTTCTTGT
AGGCAGAAATGAGGGAAAGCCTAACACCGATTCTTTGGAAGAAGCCATGGCTATTTTGCAGCACCATGATGGAGTAAGTGGTACTGAGAGACAACACGTGGCTGATGACTATGCTGTACGCCTGTCACATGCTTCTGAAGAGGCTGCGGATGTAATGAAGTCAGCATTAACATACCTAATGAGTGGTAGCCCGAATTGTG
AAGATAACATTTCCACTGTTGTCAAAACACATGTGAAGCCACATAAGGGATATTTATTGGAAGAGATGGACTCTCCAAGTACTTCACAATATATAAGAAAGGGAATTGAGCTTGAACAGTGCCCTCTAATGAATATCAGCTACTGCCCCAAATCTGAAAGCGAGCTGGGAGTTGGAAAGAGTCTGGTGGTTGTTATATAT
AACCCTTTGGGATGGATACGCAAAGAATTTGTTAAGATCCCGGTAACAAGTTTATCTTTGGAAGTTCTCGATTCAGATGGAGGGAAAGTACAGGTGCAATTTGTCCCAATCGATCCTGCATCCCAAAGAGTTCGTGATTACTATGCAGCAGCATTTAGAGAAACTTCAGTTCAAGCTGGACCTTTG
>TRINITY_DN102106_c0_g1_i4 from sample A4 / Example unspliced isoform:AATTGCACCATCATTAGAGAAAGGCCGCTTAAATCCTACACAACTGCACCATCATAAGAGTAAGGCCAGCGACCCTACCTTATGGGACCAACTCTCACGAGACCAACTCTCCAAGTTGCATAATGGAGCACACTACTGTAGCTTTCAATGCCGTGAACATTCTTGTTAATTTTTATTACTCAGGAAGTGATTTAGCTCTG
TCAAGTGAACATCTTTATTAATTTTTTTTACTCAAAGCTGATTTAAGTATTGACAACAACCATGACCAAATCTCTTATTTGTCCCAACATCTGCACAGAAACCCCAATAGAGCAACCTTAACAGGGTACACATCAAATTATACGGACTATTAACTTCTGCTGCTGAGGTCTTCTCTACCTACTTCGTTGAGGAAAAGACT
ATAAATGTTGCAGGATCCATGAAAGCAGCCGCAGCATACATTGGCGACATGGGCGGGTCAAAGCTTCAATGGCTTTGCATTTGCAGCTTACTGATCAATCTATGTTTCTGGCAATCCCTGGCAATTGAGTATAACACCAAAGCAGGGCCAGTGGAAGGAAAATTGAATGTTCATTTAGTTCCTCACACGCATGACGATGT
GGGATGGCTCAAAACAGTCGATCAATACTATGTTGGCTCTAACAGTTCCATACAGGCGGCAGCAGTAGAATACATCCTGGATTCATTTATCAATGCTTTGCAAGAAGACCCAAATCGCAAGTTTATTTATGTTGAAATGgtaagaagaataccaaataggcttacttcttaaggtgctttccatttccttagttcattta
tttgtttaaataacatgctttttcttcttctaaggcttttttcaaaagGTGGTGGAGGCAACAAAGTAAGGAGAAAAGGGAAATTGTTAGAAAGCTTGTTGAATCTGGCCAACTTGAATTTATAAATGGGGGATGGTGCATGCATGATGAAGCATCTACTTATTATGTGGACATGATAGATCAAACAACCCTTGGGCACC
GATTTATCAAGAAAGAGTTTGGAAAAGTTCCTCGCATTGGATGGCAGATTGATCCCTTTGGACATTCCGCTATTCAGGGTTATCTTCTAAGTGCAGAGGTTGGATTTGAAGCATTGTTCTTTGCGAGGGCTGATTATCAAGACATTGCCAAAAGAAGAGAAGATCGTACTATGGAGATGATTTGGCGTGGTTCTAAGTCA
CTTGGGTCTTCTGCACAGGTTTTCACTGGAATTCTTGCACACCATTATGATCCTCCTCCTGAATTTCGATATGACATTAAAACTACAGAAACAACCATCCAGGATGATCCCTTTCTTTATGATTATAATGTTGAGCAACAGATCGATCGTTTTGTTCAGCTTGCTGAAGAGCAGGCCAAAGAATTTCGAACAAATCATAT
CATGTGGACAATGGGTGAAGACTTTGCATATGAAAATGCAAATACGTGGTTCAAGCAGATGGATAAACTTATACATTATGCAAATAAGGATGGGCGTGTGAATGCATTTTATTCAACTCCAACGATCTACACTACTGAAAAAAATGCTGCCAATGAGAGCTGGCCTTTGAAGACAGACGACTTTTTCCCGTACGCAGATT
GTGAACATTGTTACTGGACAGGGTACTTCACCAGTCGACCTGCTCTAAAAGGTTATGTGAGGAAACTCTCTGGGGTTTTGCAGGCAACAAGACAGTTGGAGTTTCTTGTAGGCAGAAATGAGGGAAAGCCTAACACCGATTCTTTGGAAGAAGCCATGGCTATTTTGCAGCACCATGATGGAGTAAGTGGTACTGAGAGA
CAACACGTGGCTGATGACTATGCTGTACGCCTGTCACATGCTTCTGAAGAGGCTGCGGATGTAATGAAGTCAGCATTAACATACCTAATGAGTGGTAGCCCGAATTGTGAAGATAACATTTCCACTGTTGTCAAAACACATGTGAAGCCACATAAGGGATATTTATTGGAAGAGATGGACTCTCCAAGTACTTCACAATA
TATAAGAAAGGGAATTGAGCTTGAACAGTGCCCTCTAATGAATATCAGCTACTGCCCCAAATCTGAAAGCGAGCTGGGAGTTGGAAAGAGTCTGGTGGTTGTTATATATAACCCTTTGGGATGGATACGCAAAGAATTTGTTAAGATCCCGGTAACAAGTTTATCTTTGGAAGTTCTCGATTCAGATGGAGGGAAAGTAC
AGGTGCAATTTGTCCCAATCGATCCTGCATCCCAAAGAGTTCGTGATTACTATGCAGCAGCATTTAGAGAAACTTCAGTTCAAGCTGGACCTTTG
Intron 2 GTAAGGCCAG ... ATCTGCACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 68.97 | 9 | 17 | 23 |
| A2 | 44 | 28 | 8 | 36 |
| A3 | 56.67 | 13 | 6 | 28 |
| A4 | 70.21 | 7 | 10 | 23 |
| A5 | 63.64 | 6 | 6 | 15 |
| A6 | 100 | 0 | 2 | 0 |
| A7 | 50 | 10 | 6 | 14 |
| A8 | 85.71 | 1 | 3 | 9 |
| A9 | 69.23 | 6 | 11 | 16 |
| A10 | 48.15 | 7 | 3 | 10 |
>TRINITY_DN115593_c0_g1_i1 from sample A2 / Example spliced isoformAATTGCACCATCATTAGAGAAAGGCCGCTTAAATCCTACACAACTGCACCATCATAAGAAAACCCCAATAGAGCAACCTTAACAGGGTACACATCAAATTATACGGACTATTAACTTCTGCTGCTGAGGTCTTCTCTACCTACTTCGTTGAGGAAAAGACTATAAATGTTGCAGGATCCATGAAAGCAGCCGCAGCATAC
ATTGGCGACATGGGCGGGTCAAAGCTTCAATGGCTTTGCATTTGCAGCTTACTGATCAATCTATGTTTCTGGCAATCCCTGGCAATTGAGTATAACACCAAAGCAGGGCCAGTGGAAGGAAAATTGAATGTTCATTTAGTTCCTCACACGCATGACGATGTGGGATGGCTCAAAACAGTCGATCAATACTATGTTGGCTC
TAACAGTTCCATACAGGCGGCAGCAGTAGAATACATCCTGGATTCATTTATCAATGCTTTGCAAGAAGACCCAAATCGCAAGTTTATTTATGTTGAAATGGCTTTTTTCAAAAGGTGGTGGAGGCAACAAAGTAAGGAGAAAAGGGAAATTGTTAGAAAGCTTGTTGAATCTGGCCAACTTGAATTTATAAATGGGGGAT
GGTGCATGCATGATGAAGCATCTACTTATTATGTGGACATGATAGATCAAACAACCCTTGGGCACCGATTTATCAAGAAAGAGTTTGGAAAAGTTCCTCGCATTGGATGGCAGATTGATCCCTTTGGACATTCCGCTATTCAGGGTTATCTTCTAAGTGCAGAGGTTGGATTTGAAGCATTGTTCTTTGCGAGGGCTGAT
TATCAAGACATTGCCAAAAGAAGAGAAGATCGTACTATGGAGATGATTTGGCGTGGTTCTAAGTCACTTGGGTCTTCTGCACAGGTTTTCACTGGAATTCTTGCACACCATTATGATCCTCCTCCTGAATTTCGATATGACATTAAAACTACAGAAACAACCATCCAGGATGATCCCTTTCTTTATGATTATAATGTTGA
GCAACAGATCGATCGTTTTGTTCAGCTTGCTGAAGAGCAGGCCAAAGAATTTCGAACAAATCATATCATGTGGACAATGGGTGAAGACTTTGCATATGAAAATGCAAATACGTGGTTCAAGCAGATGGATAAACTTATACATTATGCAAATAAGGATGGGCGTGTGAATGCATTTTATTCAACTCCAACGATCTACACTA
CTGAAAAAAATGCTGCCAATGAGAGCTGGCCTTTGAAGACAGACGACTTTTTCCCGTACGCAGATTGTGAACATTGTTACTGGACAGGGTACTTCACCAGTCGACCTGCTCTAAAAGGTTATGTGAGGAAACTCTCTGGGGTTTTGCAGGCAACAAGACAGTTGGAGTTTCTTGTAGGCAGAAATGAGGGAAAGCCTAAC
ACCGATTCTTTGGAAGAAGCCATGGCTATTTTGCAGCACCATGATGGAGTAAGTGGTACTGAGAGACAACACGTGGCTGATGACTATGCTGTACGCCTGTCACATGCTTCTGAAGAGGCTGCGGATGTAATGAAGTCAGCATTAACATACCTAATGAGTGGTAGCCCGAATTGTGAAGATAACATTTCCACTGTTGTCAA
AACACATGTGAAGCCACATAAGGGATATTTATTGGAAGAGATGGACTCTCCAAGTACTTCACAATATATAAGAAAGGGAATTGAGCTTGAACAGTGCCCTCTAATGAATATCAGCTACTGCCCCAAATCTGAAAGCGAGCTGGGAGTTGGAAAGAGTCTGGTGGTTGTTATATATAACCCTTTGGGATGGATACGCAAAG
AATTTGTTAAGATCCCGGTAACAAGTTTATCTTTGGAAGTTCTCGATTCAGATGGAGGGAAAGTACAGGTGCAATTTGTCCCAATCGATCCTGCATCCCAAAGAGTTCGTGATTACTATGCAGCAGCATTTAGAGAAACTTCAGTTCAAGCTGGACCTTTGTTCAATCTGTATTTTGAAGTTTCAGTTCCTGCTCTTGGT
TATGCTGTCTATTTCATAAAAGCTACAAAAAGTGAAGCTTCATGGACATCAAAGAGGCCACAAGATTTCAATGGAGATATAATTCTTGATTCAACTGGGATACAGATGGTATTCTCCAATTCTACAGGGTTGTTGAAGCAGATTAGATATCATGAACATGGAGTATCCCTTCCTGTTGAGCAGTCATTTTGCTGGTATAA
TGGAAGTGATGGCAACACTGGCGAGAAAAAGATCCAGGCTTCTGGTGCTTATGTATTTCGCCCCAACAGTTCCAGCTGCTTTCCTCTTGGGGAATCAAGTGATCAGGCTATACAGTCAGTTGTACAAGGAGATATTGTGAGTGAAGTGCATCAACAGTTTTCTCCCTGGGTGTCACAGGTAGTTAGGTTGTACAAGAATG
CAGAGGATGCTGAAATTGATTTCCTGGTTGGGCCAATTCCAGTTGATGACAATCTAGGGAGAGAGGTAATAGCACGATTCACGACAAACATTTCATCAAATGGAGAATTTTTCACAGATTCCAATGGTCGGGATTTTCTAAAGAGAGTCAGAAATTACAGGAAGGATTGGGATTTGGATGTACATGAAGATATTGCTGGA
AATTATTACCCGCTGAATCTGGGTATCTACTTGAAAGACAACAAGACAGACTTTTCTTTACTCGTTGATCGTTCTCTGGGGGGTTCAAGCATTTTTGATGGAGAGCTAGAGTTGATGCTTCATAGGCGACTGCTCCATGATGATGGTAGGGGTGTTGGTGAAGCCCTTAATGAAACTGTGTGTATAAATGGAACAAATTC
CTGTGAAGGTTTAACTGTTCAAGGTAAATTATATTTGAGTGTCAAGCCTGTAGAAGAAGCTCCAGAATGGAGGAGGACAAAGGGATTAAAAGCTGCACTTCCTCTCCAGATTTTATTTGCCACAGTAGAAGAAGAAGAACTGAATCAGATCAACACACCTCAATATTCAGCAATGGCCTCAGGCTACGAGTTACCACCAA
ATATTGCAATCATTACACTTCAGGAATTGGAGGATCAGCATACATTGTTGCGTCTGGCACATCTTTACGAGGTTGGAGAAAGTGACAAATTTTCAAGCATTGCAAGAGTTGATCTTCAAAGTCTATTTTCAAGACGCAAGATTAAGGAAATTGTGGAGCTCAACCTCTCAGCAGTTCAAAATAAGTCAGAAATGAAGTCA
CTGGATTGGCGAGTTGAAGGAGAAGAGAATATTTTCATCGAGCCCTCTAAGAGAAACAAATTAAAAGATGAAGAGAATATTTTCATCGAGCCCTCTAAGAGAAACAAATTAAAAGATGAAGAGTACATTATAGAACTAGCACCCATGGAAATAAGGACCTTTCAACTTGAGTTCGATGACTAGGCAGTTGTGGTATATGT
GTAATAATAATCACAGAACCCATGTTATGGACTCAATTGGTGGATTGTTGTTGGAATGTGTTGTAACTAGATAATAGTTTTCTTTTATAAGCAATTGTTGGTGCATTAAATAAATGTGTTGCATTATGGAAGCATGTGACCTTCTAAAAGTTTGTCCAAAAAGCACTACCATGAATTTACTTAGAAAACAAAAAGATATA
TGCAGAGAGATTGGTCG
>TRINITY_DN115593_c0_g1_i8 from sample A2 / Example unspliced isoform:AATTGCACCATCATTAGAGAAAGGCCGCTTAAATCCTACACAACTGCACCATCATAAGAgtaaggccagcgaccctaccttatgggaccaactctcacgagaccaactctccaagttgcataatggagcacactactgtagctttcaatgccgtgaacattcttgttaatttttattactcaggaagtgatttagctctg
tcaagtgaacatctttattaattttttttactcaaagctgatttaagtattgacaacaaccatgaccaaatctcttatttgtcccaacatctgcacagAAACCCCAATAGAGCAACCTTAACAGGGTACACATCAAATTATACGGACTATTAACTTCTGCTGCTGAGGTCTTCTCTACCTACTTCGTTGAGGAAAAGACT
ATAAATGTTGCAGGATCCATGAAAGCAGCCGCAGCATACATTGGCGACATGGGCGGGTCAAAGCTTCAATGGCTTTGCATTTGCAGCTTACTGATCAATCTATGTTTCTGGCAATCCCTGGCAATTGAGTATAACACCAAAGCAGGGCCAGTGGAAGGAAAATTGAATGTTCATTTAGTTCCTCACACGCATGACGATGT
GGGATGGCTCAAAACAGTCGATCAATACTATGTTGGCTCTAACAGTTCCATACAGGCGGCAGCAGTAGAATACATCCTGGATTCATTTATCAATGCTTTGCAAGAAGACCCAAATCGCAAGTTTATTTATGTTGAAATGGCTTTTTTCAAAAGGTGGTGGAGGCAACAAAGTAAGGAGAAAAGGGAAATTGTTAGAAAGC
TTGTTGAATCTGGCCAACTTGAATTTATAAATGGGGGATGGTGCATGCATGATGAAGCATCTACTTATTATGTGGACATGATAGATCAAACAACCCTTGGGCACCGATTTATCAAGAAAGAGTTTGGAAAAGTTCCTCGCATTGGATGGCAGATTGATCCCTTTGGACATTCCGCTATTCAGGGTTATCTTCTAAGTGCA
GAGGTTGGATTTGAAGCATTGTTCTTTGCGAGGGCTGATTATCAAGACATTGCCAAAAGAAGAGAAGATCGTACTATGGAGATGATTTGGCGTGGTTCTAAGTCACTTGGGTCTTCTGCACAGGTTTTCACTGGAATTCTTGCACACCATTATGATCCTCCTCCTGAATTTCGATATGACATTAAAACTACAGAAACAAC
CATCCAGGATGATCCCTTTCTTTATGATTATAATGTTGAGCAACAGATCGATCGTTTTGTTCAGCTTGCTGAAGAGCAGGCCAAAGAATTTCGAACAAATCATATCATGTGGACAATGGGTGAAGACTTTGCATATGAAAATGCAAATACGTGGTTCAAGCAGATGGATAAACTTATACATTATGCAAATAAGGATGGGC
GTGTGAATGCATTTTATTCAACTCCAACGATCTACACTACTGAAAAAAATGCTGCCAATGAGAGCTGGCCTTTGAAGACAGACGACTTTTTCCCGTAAGAATTTCTACTGAGATTTGAAAATAAATAATTACATTTTTGATTGTTTCAATTTTCTGTCAATTTATCCTATTATAGATTATATAGAGTTATGGCCCATGGG
AGCTGGTGCATTACATGATCAACACAGATTATAATTATCATTGCTTTAGCACATAGACAATGCGTTCTTGCTT
Intron 3 GTAGCTTTCA ... ATCTGCACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 59.62 | 19.3 | 33.4 | 23 |
| A2 | 47.44 | 29.3 | 16.7 | 36 |
| A3 | 53.9 | 20.7 | 20.4 | 28 |
| A4 | 59.93 | 13.9 | 18.1 | 23 |
| A5 | 56.1 | 9 | 8 | 15 |
| A6 | 24.28 | 4.7 | 3 | 0 |
| A7 | 44.58 | 17.4 | 14 | 14 |
| A8 | 76.23 | 2.4 | 6 | 9 |
| A9 | 64.74 | 10.1 | 21 | 16 |
| A10 | 37.88 | 11.6 | 4 | 10 |
>TRINITY_DN124570_c0_g2_i10 from sample A1 / Example spliced isoformATTAGAGAAAGGCCGCTTAAATCCTACACAACTGCACCATCATAAGAGTAAGGCCAGCGACCCTACCTTATGGGACCAACTCTCACGAGACCAACTCTCCAAGTTGCATAATGGAGCACACTACTAAACCCCAATAGAGCAACCTTAACAGGGTACACATCAAATTATACGGACTATTAACTTCTGCTGCTGAGGTCTTC
TCTACCTACTTCGTTGAGGAAAAGACTATAAATGTTGCAGGATCCATGAAAGCAGCCGCAGCATACATTGGCGACATGGGCGGGTCAAAGCTTCAATGGCTTTGCATTTGCAGCTTACTGATCAATCTATGTTTCTGGCAATCCCTGGCAATTGAGTATAACACCAAAGCAGGGCCAGTGGAAGGAAAATTGAATGTTCA
TTTAGTTCCTCACACGCATGACGATGTGGGATGGCTCAAAACAGTCGATCAATACTATGTTGGCTCTAACAGTTCCATACAGGCGGCAGCAGTAGAATACATCCTGGATTCATTTATCAATGCTTTGCAAGAAGACCCAAATCGCAAGTTTATTTATGTTGAAATGGCTTTTTTCAAAAGGTGGTGGAGGCAACAAAGTA
AGGAGAAAAGGGAAATTGTTAGAAAGCTTGTTGAATCTGGCCAACTTGAATTTATAAATGGGGGATGGTGCATGCATGATGAAGCATCTACTTATTATGTGGACATGATAGATCAAACAACCCTTGGGCACCGATTTATCAAGAAAGAGTTTGGAAAAGTTCCTCGCATTGGATGGCAGATTGATCCCTTTGGACATTCC
GCTATTCAGGGTTATCTTCTAAGTGCAGAGGTTGGATTTGAAGCATTGTTCTTTGCGAGGGCTGATTATCAAGACATTGCCAAAAGAAGAGAAGATCGTACTATGGAGATGATTTGGCGTGGTTCTAAGTCACTTGGGTCTTCTGCACAGGTTTTCACTGGAATTCTTGCACACCATTATGATCCTCCTCCTGAATTTCG
ATATGACATTAAAACTACAGAAACAACCATCCAGGATGATCCCTTTCTTTATGATTATAATGTTGAGCAACAGATCGATCGTTTTGTTCAGCTTGCTGAAGAGCAGGCCAAAGAATTTCGAACAAATCATATCATGTGGACAATGGGTGAAGACTTTGCATATGAAAATGCAAATACGTGGTTCAAGCAGATGGATAAAC
TTATACATTATGCAAATAAGGATGGGCGTGTGAATGCATTTTATTCAACTCCAACGATCTACACTACTGAAAAAAATGCTGCCAATGAGAGCTGGCCTTTGAAGACAGACGACTTTTTCCCGTACGCAGATTGTGAACATTGTTACTGGACAGGGTACTTCACCAGTCGACCTGCTCTAAAAGGTTATGTGAGGAAACTC
TCTGGGGTTTTGCAGGCAACAAGACAGTTGGAGTTTCTTGTAGGCAGAAATGAGGGAAAGCCTAACACCGATTCTTTGGAAGAAGCCATGGCTATTTTGCAGCACCATGATGGAGTAAGTGGTACTGAGAGACAACACGTGGCTGATGACTATGCTGTACGCCTGTCACATGCTTCTGAAGAGGCTGCGGATGTAATGAA
GTCAGCATTAACATACCTAATGAGTGGTAGCCCGAATTGTGAAGATAACATTTCCACTGTTGTCAAAACACATGTGAAGCCACATAAGGGATATTTATTGGAAGAGATGGACTCTCCAAGTACTTCACAATATATAAGAAAGGGAATTGAGCTTGAACAGTGCCCTCTAATGAATATCAGCTACTGCCCCAAATCTGAAA
GCGAGCTGGGAGTTGGAAAGAGTCTGGTGGTTGTTATATATAACCCTTTGGGATGGATACGCAAAGAATTTGTTAAGATCCCGGTAACAAGTTTATCTTTGGAAGTTCTCGATTCAGATGGAGGGAAAGTACAGGTGCAATTTGTCCCAATCGATCCTGCATCCCAAAGAGTTCGTGATTACTATGCAGCAGCATTTAGA
GAAACTTCAGTTCAAGCTGGACCTTTGTTCAATCTGTATTTTGAAGTTTCAGTTCCTGCTCTTGGTTATGCTGTCTATTTCATAAAAGCTACAAAAAGTGAAGCTTCATGGACATCAAAGAGGCCACAAGATTTCAATGGAGATATAATTCTTGATTCAACTGGGATACAGATGGTATTCTCCAATTCTACAGGGTTGTT
GAAGCAGATTAGATATCATGAACATGGAGTATCCCTTCCTGTTGAGCAGTCATTTTGCTGGTATAATGGAAGTGATGGCAACACTGGCGAGAAAAAGATCCAGGCTTCTGGTGCTTATGTATTTCGCCCCAACAGTTCCAGCTGCTTTCCTCTTGGGGAATCAAGTGATCAGGCTATACAGTCAGTTGTACAAGGAGATA
TTGTGAGTGAAGTGCATCAACAGTTTTCTCCCTGGGTGTCACAGGTAGTTAGGTTGTACAAGAATGCAGAGGATGCTGAAATTGATTTCCTGGTTGGGCCAATTCCAGTTGATGACAATCTAGGGAGAGAGGTAATAGCACGATTCACGACAAACATTTCATCAAATGGAGAATTTTTCACAGATTCCAATGGTCGGGAT
TTTCTAAAGAGAGTCAGAAATTACAGGAAGGATTGGGATTTGGATGTACATGAAGATATTGCTGGAAATTATTACCCGCTGAATCTGGGTATCTACTTGAAAGACAACAAGACAGACTTTTCTTTACTCGTTGATCGTTCTCTGGGGGGTTCAAGCATTTTTGATGGAGAGCTAGAGTTGATGCTTCATAGGCGACTGCT
CCATGATGATGGTAGGGGTGTTGGTGAAGCCCTTAATGAAACTGTGTGTATAAATGGAACAAATTCCTGTGAAGGTTTAACTGTTCAAGGTAAATTATATTTGAGTGTCAAGCCTGTAGAAGAAGCTCCAGAATGGAGGAGGACAAAGGGATTAAAAGCTGCACTTCCTCTCCAGATTTTATTTGCCACAGTAGAAGAAG
AAGAACTGAATCAGATCAACACACCTCAATATTCAGCAATGGCCTCAGGCTACGAGTTACCACCAAATATTGCAATCATTACACTTCAGGAATTGGAGGATCAGCATACATTGTTGCGTCTGGCACATCTTTACGAGGTTGGAGAAAGTGACAAATTTTCAAGCATTGCAAGAGTTGATCTTCAAAGTCTATTTTCAAGA
CGCAAGATTAAGGAAATTGTGGAGCTCAACCTCTCAGCAGTTCAAAATAAGTCAGAAATGAAGTCACTGGATTGGCGAGTTGAAGGAGAAGAGAATATTTTCATCGAGCCCTCTAAGAGAAACAAATTAAAAGATGAAGAGTACATTATAGAACTAGCACCCATGGAAATAAGGACCTTTCAACTTGAGTTCGATGACTA
GGCAGTTGTGGTATATGTGTAATAATAATCACAGAACCCATGTTATGGACTCAATTGGTGGATTGTTGTTGGAATGTGTTGTAACTAGATAATAGTTTTCTTTTATAAGCAATTGTTGGTGCATTAAATAAATGTGTTGCATTATGGAAGCATGTGACCTTCTAAAAGTTTGTCCAAAAAGCACTACCATGAATTTACTT
AGAAAACAAAAAGATATATGCAGAG
>TRINITY_DN124570_c0_g2_i1 from sample A1 / Example unspliced isoform:ATTAGAGAAAGGCCGCTTAAATCCTACACAACTGCACCATCATAAGAGTAAGGCCAGCGACCCTACCTTATGGGACCAACTCTCACGAGACCAACTCTCCAAGTTGCATAATGGAGCACACTACTgtagctttcaatgccgtgaacattcttgttaatttttattactcaggaagtgatttagctctgtcaagtgaacat
ctttattaattttttttactcaaagctgatttaagtattgacaacaaccatgaccaaatctcttatttgtcccaacatctgcacagAAACCCCAATAGAGCAACCTTAACAGGGTACACATCAAATTATACGGACTATTAACTTCTGCTGCTGAGGTCTTCTCTACCTACTTCGTTGAGGAAAAGACTATAAATGTTGCA
GGATCCATGAAAGCAGCCGCAGCATACATTGGCGACATGGGCGGGTCAAAGCTTCAATGGCTTTGCATTTGCAGCTTACTGATCAATCTATGTTTCTGGCAATCCCTGGCAATTGAGTATAACACCAAAGCAGGGCCAGTGGAAGGAAAATTGAATGTTCATTTAGTTCCTCACACGCATGACGATGTGGGATGGCTCAA
AACAGTCGATCAATACTATGTTGGCTCTAACAGTTCCATACAGGCGGCAGCAGTAGAATACATCCTGGATTCATTTATCAATGCTTTGCAAGAAGACCCAAATCGCAAGTTTATTTATGTTGAAATGGCTTTTTTCAAAAGGTGGTGGAGGCAACAAAGTAAGGAGAAAAGGGAAATTGTTAGAAAGCTTGTTGAATCTG
GCCAACTTGAATTTATAAATGGGGGATGGTGCATGCATGATGAAGCATCTACTTATTATGTGGACATGATAGATCAAACAACCCTTGGGCACCGATTTATCAAGAAAGAGTTTGGAAAAGTTCCTCGCATTGGATGGCAGATTGATCCCTTTGGACATTCCGCTATTCAGGGTTATCTTCTAAGTGCAGAGGTTGGATTT
GAAGCATTGTTCTTTGCGAGGGCTGATTATCAAGACATTGCCAAAAGAAGAGAAGATCGTACTATGGAGATGATTTGGCGTGGTTCTAAGTCACTTGGGTCTTCTGCACAGGTTTTCACTGGAATTCTTGCACACCATTATGATCCTCCTCCTGAATTTCGATATGACATTAAAACTACAGAAACAACCATCCAGGATGA
TCCCTTTCTTTATGATTATAATGTTGAGCAACAGATCGATCGTTTTGTTCAGCTTGCTGAAGAGCAGGCCAAAGAATTTCGAACAAATCATATCATGTGGACAATGGGTGAAGACTTTGCATATGAAAATGCAAATACGTGGTTCAAGCAGATGGATAAACTTATACATTATGCAAATAAGGATGGGCGTGTGAATGCAT
TTTATTCAACTCCAACGATCTACACTACTGAAAAAAATGCTGCCAATGAGAGCTGGCCTTTGAAGACAGACGACTTTTTCCCGTACGCAGATTGTGAACATTGTTACTGGACAGGGTACTTCACCAGTCGACCTGCTCTAAAAGGTTATGTGAGGAAACTCTCTGGGGTTTTGCAGGCAACAAGACAGTTGGAGTTTCTT
GTAGGCAGAAATGAGGGAAAGCCTAACACCGATTCTTTGGAAGAAGCCATGGCTATTTTGCAGCACCATGATGGAGTAAGTGGTACTGAGAGACAACACGTGGCTGATGACTATGCTGTACGCCTGTCACATGCTTCTGAAGAGGCTGCGGATGTAATGAAGTCAGCATTAACATACCTAATGAGTGGTAGCCCGAATTG
TGAAGATAACATTTCCACTGTTGTCAAAACACATGTGAAGCCACATAAGGGATATTTATTGGAAGAGATGGACTCTCCAAGTACTTCACAATATATAAGAAAGGGAATTGAGCTTGAACAGTGCCCTCTAATGAATATCAGCTACTGCCCCAAATCTGAAAGCGAGCTGGGAGTTGGAAAGAGTCTGGTGGTTGTTATAT
ATAACCCTTTGGGATGGATACGCAAAGAATTTGTTAAGATCCCGGTAACAAGTTTATCTTTGGAAGTTCTCGATTCAGATGGAGGGAAAGTACAGGTGCAATTTGTCCCAATCGATCCTGCATCCCAAAGAGTTCGTGATTACTATGCAGCAGCATTTAGAGAAACTTCAGTTCAAGCTGGACCTTTGTTCAATCTGTAT
TTTGAAGTTTCAGTTCCTGCTCTTGGTTATGCTGTCTATTTCATAAAAGCTACAAAAAGTGAAGCTTCATGGACATCAAAGAGGCCACAAGATTTCAATGGAGATATAATTCTTGATTCAACTGGGATACAGATGGTATTCTCCAATTCTACAGGGTTGTTGAAGCAGATTAGATATCATGAACATGGAGTATCCCTTCC
TGTTGAGCAGTCATTTTGCTGGTATAATGGAAGTGATGGCAACACTGGCGAGAAAAAGATCCAGGCTTCTGGTGCTTATGTATTTCGCCCCAACAGTTCCAGCTGCTTTCCTCTTGGGGAATCAAGTGATCAGGCTATACAGTCAGTTGTACAAGGAGATATTGTGAGTGAAGTGCATCAACAGTTTTCTCCCTGGGTGT
CACAGGTAGTTAGGTTGTACAAGAATGCAGAGGATGCTGAAATTGATTTCCTGGTTGGGCCAATTCCAGTTGATGACAATCTAGGGAGAGAGGTAATAGCACGATTCACGACAAACATTTCATCAAATGGAGAATTTTTCACAGATTCCAATGGTCGGGATTTTCTAAAGAGAGTCAGAAATTACAGGAAGGATTGGGAT
TTGGATGTACATGAAGATATTGCTGGAAATTATTACCCGCTGAATCTGGGTATCTACTTGAAAGACAACAAGACAGACTTTTCTTTACTCGTTGATCGTTCTCTGGGGGGTTCAAGCATTTTTGATGGAGAGCTAGAGTTGATGCTTCATAGGCGACTGCTCCATGATGATGGTAGGGGTGTTGGTGAAGCCCTTAATGA
AACTGTGTGTATAAATGGAACAAATTCCTGTGAAGGTTTAACTGTTCAAGGTAAATTATATTTGAGTGTCAAGCCTGTAGAAGAAGCTCCAGAATGGAGGAGGACAAAGGGATTAAAAGCTGCACTTCCTCTCCAGATTTTATTTGCCACAGTAGAAGAAGAAGAACTGAATCAGATCAACACACCTCAATATTCAGCAA
TGGCCTCAGGCTACGAGTTACCACCAAATATTGCAATCATTACACTTCAGGAATTGGAGGATCAGCATACATTGTTGCGTCTGGCACATCTTTACGAGGTTGGAGAAAGTGACAAATTTTCAAGCATTGCAAGAGTTGATCTTCAAAGTCTATTTTCAAGACGCAAGATTAAGGAAATTGTGGAGCTCAACCTCTCAGCA
GTTCAAAATAAGTCAGAAATGAAGTCACTGGATTGGCGAGTTGAAGGAGAAGAGAATATTTTCATCGAGCCCTCTAAGAGAAACAAATTAAAAGATGAAGAGTACATTATAGAACTAGCACCCATGGAAATAAGGACCTTTCAACTTGAGTTCGATGACTAGGCAGTTGTGGTATATGTGTAATAATAATCACAGAACCC
ATGTTATGGACTCAATTGGTGGATTGTTGTTGGAATGTGTTGTAACTAGATAATAGTTTTCTTTTATAAGCAATTGTTGGTGCATTAAATAAATGTGTTGCATTATGGAAGCATGTGACCTTCTAAAAGTTTGTCCAAAAAGCACTACCATGAATTTACTTAGAAAACAAAAAGATATATGCAGAG
Intron 4 GTAAGAAGAA ... TTCTTCTAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 23.81 | 40 | 8 | 17 |
| A2 | 17.95 | 32 | 6 | 8 |
| A3 | 21.57 | 40 | 3 | 19 |
| A4 | 24.21 | 36 | 7 | 16 |
| A5 | 17.65 | 28 | 6 | 6 |
| A6 | 33.33 | 2 | 0 | 2 |
| A7 | 18.52 | 33 | 7 | 8 |
| A8 | 0 | 3 | 0 | 0 |
| A9 | 18.37 | 20 | 5 | 4 |
| A10 | 23.81 | 16 | 5 | 5 |
>TRINITY_DN102106_c0_g1_i3 from sample A4 / Example spliced isoformAATTGCACCATCATTAGAGAAAGGCCGCTTAAATCCTACACAACTGCACCATCATAAGAGTAAGGCCAGCGACCCTACCTTATGGGACCAACTCTCACGAGACCAACTCTCCAAGTTGCATAATGGAGCACACTACTGTAGCTTTCAATGCCGTGAACATTCTTGTTAATTTTTATTACTCAGGAAGTGATTTAGCTCTG
TCAAGTGAACATCTTTATTAATTTTTTTTACTCAAAGCTGATTTAAGTATTGACAACAACCATGACCAAATCTCTTATTTGTCCCAACATCTGCACAGAAACCCCAATAGAGCAACCTTAACAGGGTACACATCAAATTATACGGACTATTAACTTCTGCTGCTGAGGTCTTCTCTACCTACTTCGTTGAGGAAAAGACT
ATAAATGTTGCAGGATCCATGAAAGCAGCCGCAGCATACATTGGCGACATGGGCGGGTCAAAGCTTCAATGGCTTTGCATTTGCAGCTTACTGATCAATCTATGTTTCTGGCAATCCCTGGCAATTGAGTATAACACCAAAGCAGGGCCAGTGGAAGGAAAATTGAATGTTCATTTAGTTCCTCACACGCATGACGATGT
GGGATGGCTCAAAACAGTCGATCAATACTATGTTGGCTCTAACAGTTCCATACAGGCGGCAGCAGTAGAATACATCCTGGATTCATTTATCAATGCTTTGCAAGAAGACCCAAATCGCAAGTTTATTTATGTTGAAATGGCTTTTTTCAAAAGGTGGTGGAGGCAACAAAGTAAGGAGAAAAGGGAAATTGTTAGAAAGC
TTGTTGAATCTGGCCAACTTGAATTTATAAATGGGGGATGGTGCATGCATGATGAAGCATCTACTTATTATGTGGACATGATAGATCAAACAACCCTTGGGCACCGATTTATCAAGAAAGAGTTTGGAAAAGTTCCTCGCATTGGATGGCAGATTGATCCCTTTGGACATTCCGCTATTCAGGGTTATCTTCTAAGTGCA
GAGGTTGGATTTGAAGCATTGTTCTTTGCGAGGGCTGATTATCAAGACATTGCCAAAAGAAGAGAAGATCGTACTATGGAGATGATTTGGCGTGGTTCTAAGTCACTTGGGTCTTCTGCACAGGTTTTCACTGGAATTCTTGCACACCATTATGATCCTCCTCCTGAATTTCGATATGACATTAAAACTACAGAAACAAC
CATCCAGGATGATCCCTTTCTTTATGATTATAATGTTGAGCAACAGATCGATCGTTTTGTTCAGCTTGCTGAAGAGCAGGCCAAAGAATTTCGAACAAATCATATCATGTGGACAATGGGTGAAGACTTTGCATATGAAAATGCAAATACGTGGTTCAAGCAGATGGATAAACTTATACATTATGCAAATAAGGATGGGC
GTGTGAATGCATTTTATTCAACTCCAACGATCTACACTACTGAAAAAAATGCTGCCAATGAGAGCTGGCCTTTGAAGACAGACGACTTTTTCCCGTACGCAGATTGTGAACATTGTTACTGGACAGGGTACTTCACCAGTCGACCTGCTCTAAAAGGTTATGTGAGGAAACTCTCTGGGGTTTTGCAGGCAACAAGACAG
TTGGAGTTTCTTGTAGGCAGAAATGAGGGAAAGCCTAACACCGATTCTTTGGAAGAAGCCATGGCTATTTTGCAGCACCATGATGGAGTAAGTGGTACTGAGAGACAACACGTGGCTGATGACTATGCTGTACGCCTGTCACATGCTTCTGAAGAGGCTGCGGATGTAATGAAGTCAGCATTAACATACCTAATGAGTGG
TAGCCCGAATTGTGAAGATAACATTTCCACTGTTGTCAAAACACATGTGAAGCCACATAAGGGATATTTATTGGAAGAGATGGACTCTCCAAGTACTTCACAATATATAAGAAAGGGAATTGAGCTTGAACAGTGCCCTCTAATGAATATCAGCTACTGCCCCAAATCTGAAAGCGAGCTGGGAGTTGGAAAGAGTCTGG
TGGTTGTTATATATAACCCTTTGGGATGGATACGCAAAGAATTTGTTAAGATCCCGGTAACAAGTTTATCTTTGGAAGTTCTCGATTCAGATGGAGGGAAAGTACAGGTGCAATTTGTCCCAATCGATCCTGCATCCCAAAGAGTTCGTGATTACTATGCAGCAGCATTTAGAGAAACTTCAGTTCAAGCTGGACCTTTG
>TRINITY_DN102106_c0_g1_i4 from sample A4 / Example unspliced isoform:AATTGCACCATCATTAGAGAAAGGCCGCTTAAATCCTACACAACTGCACCATCATAAGAGTAAGGCCAGCGACCCTACCTTATGGGACCAACTCTCACGAGACCAACTCTCCAAGTTGCATAATGGAGCACACTACTGTAGCTTTCAATGCCGTGAACATTCTTGTTAATTTTTATTACTCAGGAAGTGATTTAGCTCTG
TCAAGTGAACATCTTTATTAATTTTTTTTACTCAAAGCTGATTTAAGTATTGACAACAACCATGACCAAATCTCTTATTTGTCCCAACATCTGCACAGAAACCCCAATAGAGCAACCTTAACAGGGTACACATCAAATTATACGGACTATTAACTTCTGCTGCTGAGGTCTTCTCTACCTACTTCGTTGAGGAAAAGACT
ATAAATGTTGCAGGATCCATGAAAGCAGCCGCAGCATACATTGGCGACATGGGCGGGTCAAAGCTTCAATGGCTTTGCATTTGCAGCTTACTGATCAATCTATGTTTCTGGCAATCCCTGGCAATTGAGTATAACACCAAAGCAGGGCCAGTGGAAGGAAAATTGAATGTTCATTTAGTTCCTCACACGCATGACGATGT
GGGATGGCTCAAAACAGTCGATCAATACTATGTTGGCTCTAACAGTTCCATACAGGCGGCAGCAGTAGAATACATCCTGGATTCATTTATCAATGCTTTGCAAGAAGACCCAAATCGCAAGTTTATTTATGTTGAAATGgtaagaagaataccaaataggcttacttcttaaggtgctttccatttccttagttcattta
tttgtttaaataacatgctttttcttcttctaagGCTTTTTTCAAAAGGTGGTGGAGGCAACAAAGTAAGGAGAAAAGGGAAATTGTTAGAAAGCTTGTTGAATCTGGCCAACTTGAATTTATAAATGGGGGATGGTGCATGCATGATGAAGCATCTACTTATTATGTGGACATGATAGATCAAACAACCCTTGGGCACC
GATTTATCAAGAAAGAGTTTGGAAAAGTTCCTCGCATTGGATGGCAGATTGATCCCTTTGGACATTCCGCTATTCAGGGTTATCTTCTAAGTGCAGAGGTTGGATTTGAAGCATTGTTCTTTGCGAGGGCTGATTATCAAGACATTGCCAAAAGAAGAGAAGATCGTACTATGGAGATGATTTGGCGTGGTTCTAAGTCA
CTTGGGTCTTCTGCACAGGTTTTCACTGGAATTCTTGCACACCATTATGATCCTCCTCCTGAATTTCGATATGACATTAAAACTACAGAAACAACCATCCAGGATGATCCCTTTCTTTATGATTATAATGTTGAGCAACAGATCGATCGTTTTGTTCAGCTTGCTGAAGAGCAGGCCAAAGAATTTCGAACAAATCATAT
CATGTGGACAATGGGTGAAGACTTTGCATATGAAAATGCAAATACGTGGTTCAAGCAGATGGATAAACTTATACATTATGCAAATAAGGATGGGCGTGTGAATGCATTTTATTCAACTCCAACGATCTACACTACTGAAAAAAATGCTGCCAATGAGAGCTGGCCTTTGAAGACAGACGACTTTTTCCCGTACGCAGATT
GTGAACATTGTTACTGGACAGGGTACTTCACCAGTCGACCTGCTCTAAAAGGTTATGTGAGGAAACTCTCTGGGGTTTTGCAGGCAACAAGACAGTTGGAGTTTCTTGTAGGCAGAAATGAGGGAAAGCCTAACACCGATTCTTTGGAAGAAGCCATGGCTATTTTGCAGCACCATGATGGAGTAAGTGGTACTGAGAGA
CAACACGTGGCTGATGACTATGCTGTACGCCTGTCACATGCTTCTGAAGAGGCTGCGGATGTAATGAAGTCAGCATTAACATACCTAATGAGTGGTAGCCCGAATTGTGAAGATAACATTTCCACTGTTGTCAAAACACATGTGAAGCCACATAAGGGATATTTATTGGAAGAGATGGACTCTCCAAGTACTTCACAATA
TATAAGAAAGGGAATTGAGCTTGAACAGTGCCCTCTAATGAATATCAGCTACTGCCCCAAATCTGAAAGCGAGCTGGGAGTTGGAAAGAGTCTGGTGGTTGTTATATATAACCCTTTGGGATGGATACGCAAAGAATTTGTTAAGATCCCGGTAACAAGTTTATCTTTGGAAGTTCTCGATTCAGATGGAGGGAAAGTAC
AGGTGCAATTTGTCCCAATCGATCCTGCATCCCAAAGAGTTCGTGATTACTATGCAGCAGCATTTAGAGAAACTTCAGTTCAAGCTGGACCTTTG