sp|O64644|SAP18_ARATH ----> Histone deacetylase complex subunit SAP18

Intron 1 GTATGAAGGA ... AATTTTTTAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	84	2	8	13
A2	100	0	1	2
A3	78.57	3	5	17
A4	61.11	7	6	16
A5	77.78	1	7	0
A6	59.69	26	36	41
A7	54.55	35	37	47
A8	63.36	24	32	51
A9	55.69	37	30	63
A10	58.49	22	27	35

>TRINITY_DN44877_c0_g2_i2 from sample A6 / Example spliced isoform

TGACTGTTGAAAAATATTTGTATCCAAAAAAATTCAAAATTTATAAAAGAGTAGATTTTCGCGGTATTGTCCTTAGCACTTTGGGGAAGGCATTTCTGTAATATCATTTTCAGAGATCCAAGGGATTTGGATTTTATGGAGTGCGTGCAACTGGTTATGAGAGTCAGAAATTTGAGAGCCGTGACTACCCTGGTCCCCAA
CAAAATGCATGAAATCTAATGCGAAACCCATGAAAACCCTAAACAATAGAGCAAAAAAATGGGATCAATTGAAGCAGAGTTGGAGGACAAACTGGAAATGAGGGTATAAGGCAAGGTTATAGTCTCCGTGAAAAGAAATTGATGCAACTCAAGAAGCTCAATGTTGCAATCTTCCCAGTCAGATACAATGACTAATATTA
TTCGGATTCCCTCTCTTCCGAAGACTTCACCGAGATCGATAAAACTAAATCTCTTCATCATTTCATTTATGTCTTTTAAATGAGAAATGAGCAATATTCCTCTTCCAATGGGAATGGAAGCTCAGACTCGCAGTATCCATGGTACACTGATGATTCCGATCTGATGATACCGATCTTTCTAGACACTATTCTGGATACCC
ATCTGGCCCTCTCGGCATCTCCCTCAGAGACTATTGATGATCTTAGAGGAAGTCATCATATTGCAGAGGAATTTGCAGTTAGAGGCAAGGAACCAAAAGATGAGGTGCAAATTTACACTTGGAAGGATGCTACACTTCGAGAGCTAACAATCCCGTAGGAATTCTCAAGCCTAGGGGATTTGTAGTAAAATTCAGAGACA
AAGCATTGCCAAAATATCTTGGAGCATGATTGGCGCTAAAGATCATTTTTAGAAGCTGTTCTTAGAGAATTATCCTTTATTGGCACTCTCAAGCC

>TRINITY_DN44877_c0_g2_i13 from sample A6 / Example unspliced isoform:

TGACTGTTGAAAAATATTTGTATCCAAAAAAATTCAAAATTTATAAAAGAGTAGATTTTCGCGGTATTGTCCTTAGCACTTTGGGGAAGGCATTTCTGTAATATCATTTTCAGAGATCCAAGGGATTTGGATTTTATGGAGTGCGTGCAACTGGTTATGAGAGTCAGAAATTTGAGAGCCGTGACTACCCTGGTCCCCAA
CAAAATGCATGAAATCTAATGCGAAACCCATGAAAACCCTAAACAATAGAGCAAAAAAAATGGGATCAATTGAAGCAGAGTTGGAGGACAAACTGGAAATGAGGGTATAAGGCAAGGTTATAGTCTCCGTGAAAAGAAATTGATGCAACTCAAGAAGCTCACCGAGATGTCTAATATTATTCTGACTCCCTCTCTTCCGA
AGACTTCACCGAGATCGATAAAACTAAATCTCTTCATCATTTCATTTATGTCTTTTAAATGAGAAATGAGCAATATTCCTCTTCCAATGGGAATGGAAGCTCAGACTCGCAGTATCCATGGTACACTGATGATTCCGATCTGATGATACCGATCTTTCTAGACACTATTCTGGATACCCATCTGGCCCTCTCGGCATCTC
CCTCAGAGACTATTGATGATCTTAGAGGAAGTCATCATATTGCAGAGGAATTTGCAGTTAGAGGCAAGGAACCAAAAGATGAGGTGCAAATTTACACTTGGAAGGATGCTACACTTCGAGAGCTAACAATCCCGgtatgaaggatttaattcgttctcatttttactacatcggctttcctatgttcatgcgattgtttg
tcacagtcaaagctacaagcattttatgatgcttgtgcaatgatagatgcgtaacatttgatatttaatagcctacttaatggcgtatgccttgatgattgtcatttgacaaaagagtttcaatacatgaaaaatctatgaaagagaaggtggactaaccaaataaaaaaatgctaattttttagTAGGAATTCTCAAGC
CTAGGGGATTTGTAGTAAAATTCAGAGACAAAGCATTGCCAAAATATCTTGGAGCATGATTGGCGCTAAAGATCATTTTTAGAAGCTGTTCTTAGAGAATTATCCTTTATTGGCACTCTCAAGCCTGAGGGCTTTGTAGTAAAGTTAATGGTAAAGAATTACCATACTAAATCCATTGG

Intron 2 GTATGAAGGA ... AATTTTTTAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	83.33	2	7	13
A2	100	0	3	6
A3	78.57	3	5	17
A4	61.11	7	6	16
A5	80	1	8	0
A6	58.73	26	33	41
A7	56.52	35	41	50
A8	65.22	24	38	52
A9	57.23	37	34	65
A10	61.74	22	32	39

>TRINITY_DN44877_c0_g2_i2 from sample A6 / Example spliced isoform

TGACTGTTGAAAAATATTTGTATCCAAAAAAATTCAAAATTTATAAAAGAGTAGATTTTCGCGGTATTGTCCTTAGCACTTTGGGGAAGGCATTTCTGTAATATCATTTTCAGAGATCCAAGGGATTTGGATTTTATGGAGTGCGTGCAACTGGTTATGAGAGTCAGAAATTTGAGAGCCGTGACTACCCTGGTCCCCAA
CAAAATGCATGAAATCTAATGCGAAACCCATGAAAACCCTAAACAATAGAGCAAAAAAATGGGATCAATTGAAGCAGAGTTGGAGGACAAACTGGAAATGAGGGTATAAGGCAAGGTTATAGTCTCCGTGAAAAGAAATTGATGCAACTCAAGAAGCTCAATGTTGCAATCTTCCCAGTCAGATACAATGACTAATATTA
TTCGGATTCCCTCTCTTCCGAAGACTTCACCGAGATCGATAAAACTAAATCTCTTCATCATTTCATTTATGTCTTTTAAATGAGAAATGAGCAATATTCCTCTTCCAATGGGAATGGAAGCTCAGACTCGCAGTATCCATGGTACACTGATGATTCCGATCTGATGATACCGATCTTTCTAGACACTATTCTGGATACCC
ATCTGGCCCTCTCGGCATCTCCCTCAGAGACTATTGATGATCTTAGAGGAAGTCATCATATTGCAGAGGAATTTGCAGTTAGAGGCAAGGAACCAAAAGATGAGGTGCAAATTTACACTTGGAAGGATGCTACACTTCGAGAGCTAACAATCCCGTAGGAATTCTCAAGCCTAGGGGATTTGTAGTAAAATTCAGAGACA
AAGCATTGCCAAAATATCTTGGAGCATGATTGGCGCTAAAGATCATTTTTAGAAGCTGTTCTTAGAGAATTATCCTTTATTGGCACTCTCAAGCC

>TRINITY_DN44877_c0_g2_i5 from sample A6 / Example unspliced isoform:

TGACTGTTGAAAAATATTTGTATCCAAAAAAATTCAAAATTTATAAAAGAGTAGATTTTCGCGGTATTGTCCTTAGCACTTTGGGGAAGGCATTTCTGTAATATCATTTTCAGAGATCCAAGGGATTTGGATTTTATGGAGTGCGTGCAACTGGTTATGAGAGTCAGAAATTTGAGAGCCGTGACTACCCTGGTCCCCAA
CAAAATGCATGAAATCTAATGCGAAACCCATGAAAACCCTAAACAATAGAGCAAAAAAATGGGATCAATTGAAGCAGAGTTGGAGGACAAACTGGAAATGAGGGTATAAGGCAAGGTTATAGTCTCCGTGAAAAGAAATTGATGCAACTCAAGAAGCTCACCGAGATGTCTAATATTATTCTGACTCCCTCTCTTCCGAA
GACTTCACCGAGATCGATAAAACTAAATCTCTTCATCATTTCATTTATGTCTTTTAAATGAGAAATGAGCAATATTCCTCTTCCAATGGGAATGGAAGCTCAGACTCGCAGTATCCATGGTACACTGATGATTCCGATCTTTCTAGACACTATTCTGGATACCCATCTGGCCCTCTCGGCATCTCCCTCAGAGACTATTG
ATGATCTTAGAGGAAGTCATCATATTGCAGAGGAATTTGCAGTTAGAGGCAAGGAACCAAAAGATGAGGTGCAAATTTACACTTGGAAGGATGCTACACTTCGAGAGCTAACAATCCCGgtatgaaggatttaattcgttctcatttttactacatcggctttcctatgttcatgcgattgtttgtcacagtcaaagcta
caagcattttatgcttgtactgtttgcaggtaggaattcacactttcgcattcactctcccaaatgttctttgttgacatcgttaaaaaacgcttcattacgtgcaaaaaaaatgcttgtgcaatgatagatgcgtaacatttgatatttaatagcctacttaatggcgtatgccttgatgattgtcatttgacaaaaga
gtttcaatacatgaaaaatctatgaaagagaatgtggactaaccaaataaaaaaatgctaattttttagTAGGAATTCTCAAGCCTAGGGGATTTGTAGTAAAATTCAGAGACAAAGCATTGCCAAAATCTCTTGGAGCATGATTGGCGCTAAAGATCATTTTTAGAAGCTGTTCTTAGAGAATTATCCTTTATTGGCAC
TCTCAAGCCCGAGGGCTTTGTAGTAAAGTTAATGGTAAAGAATTACCATACTAAATCCATTGGGATCTCTTTCCCTAAATTCCCTAGTGTGAGAATCTGGTGAGAGTGTTTCCATAATATTTCCCTTCATGATATATTTTCTTCTTATTTATATGTTTGCAGTATACAATCCAAGTATTGTTTACTTTTTGTCAAAAGAA
TTCGAATATATCTATTCAGAATTTTCAATCAAAACCACAAAATGCCTTGCCATTGTTTAGAAGGTTTGGCTCTTATCACAATTTCATCCAATTAGACATCCCGC

Intron 3 GTATGAAGGA ... CTGTTTGCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	76.47	2	4	9
A2	100	0	3	4
A3	83.97	1	4.5	6
A4	53.64	6.5	6	9
A5	83.33	1	8	2
A6	50.96	35	27.5	45
A7	51.12	33.5	34.5	35
A8	54.62	34.5	41	42
A9	45.81	39.5	31.5	35
A10	61.13	24	37.5	38

>TRINITY_DN47406_c0_g1_i7 from sample A10 / Example spliced isoform

TAAAAAATAGACTTCCGCGGTATTGTCCTTGGCACTTTGGGGAAGGCATTTCTGTAATATCATTTTCAGAGATCCAAGGGATTTGGATTTTATGGAGTGCGTGCAACTGGTTATGAGAGTCAGGAATTTGAGAGCCGTGACTACCCTGGTCCCCAACAAAATGCATGAAATCTAATGCGAAACCCATGAAAACCCTAAAC
AATAGAGCAAAAAAATGGGATCAATTGAAGCAGAGTTGGAGGACAAACTGGAAATGAGGGTATAAGGCAAGGTTATAGTCTCCGTGAAAAGAAATTGATGCAACTCAAGAAGCTCACCGAGATGTCTAATATTATTCTGACTCCCTCTCTTCCGAAGACTTCACCGAGATCGATAAAACTAAATCTCTTCATCATTTCAT
TTATGTCTTTTAAATGAGAAATGAGCAATATTCCTCTTCCAATGGGAATGGAAGCTCAGACTCGCAGTATCCATGGTACACTGATGATTCCGATCTTTCTAGACACTATTCTGGATACCCATCTGGCCCTCTCGGCATCTTCCTCAGAGACTATTGATGATCTTAGAGGAAGTCATCATATTGCAGAGGAATTTGCAGTT
AGAGGCCAGGAGCCAAAAGATAAGGTGCAAATTTACACTTGGAGGGATGCTACACTTCGAGAGCTGACAATCCCGGTAGGAATTCACACTTTCGCATTCACTCTCCCAAATGTTCTTTGTTGACATCGTTAAAAAACGCTTCATTACGTGCAAAAAAAATGCTTGTGCAATGATAGATGCGTAACATTTGATATTTAATA
GCCTACTTAATGGCGTATGCCTTGATGATTGTCATTTGACAAAAGAGTTTCAATACATGAAAAATCTATGAAAGAGAATGTGGACTAACCAAATAAAAAAATGCTAATTTTTTAGTAGGAATTCTCAAGCCTAGGGGATTTGTAGTAAAATTCAGAGACAAAGCATTGCCAAAATCTCTTGGAGCATGATTGGCGCTAAA
GATCATTTTTAGAAGCTGTTCTTAGAGAATTATCCTTTATTGGCACTCTCAAGCCCGAGGGCTTTGTAGTAAAGTTAATGGTAAAGAATTACCATACTAAATCCATTGGGATCTCTTTCCCTAAATTCCCTAGTGTGAGAATCTGGTGAGAGTGTTTCCATAATATTTCCCTTCATGATATATTTTCTTCTTATTTATAT
GTTTGCAGTATACAATCCAAGTATTGTTTACTTTTTGTCAAAAGAATTCGAATATATCTATTCAGAATTTTCAATCAAAACCACAAAATGCCTTGCCATTGTTTAGAAGGTTTGGCACTTATCATGATTTCATCCAATTAGACATCCCGCAGAATGTAAATTACTTCTCTTCTTAAGTAACC

>TRINITY_DN47406_c0_g1_i5 from sample A10 / Example unspliced isoform:

TAAAAAATAGACTTCCGCGGTATTGTCCTTGGCACTTTGGGGAAGGCATTTCTGTAATATCATTTTCAGAGATCCAAGGGATTTGGATTTTATGGAGTGCGTGCAACTGGTTATGAGAGTCAGGAATTTGAGAGCCGTGACTACCCTGGTCCCCAACAAAATGCATGAAATCTAATGCGAAACCCATGAAAACCCTAAAC
AATAGAGCAAAAAAATGGGATCAATTGAAGCAGAGTTGGAGGACAAACTGGAAATGAGGGTATAAGGCAAGGTTATAGTCTCCGTGAAAAGAAATTGATGCAACTCAAGAAGCTCACCGAGATGTCTAATATTATTCTGACTCCCTCTCTTCCGAAGACTTCACCGAGATCGATAAAACTAAATCTCTTCATCATTTCAT
TTATGTCTTTTAAATGAGAAATGAGCAATATTCCTCTTCCAATGGGAATGGAAGCTCAGACTCGCAGTATCCATGGTACACTGATGATTCCGATCTTTCTAGACACTATTCTGGATACCCATCTGGCCCTCTCGGCATCTTCCTCAGAGACTATTGATGATCTTAGAGAGGAATTTGCAGTTAGAGGCCAGGAGCCAAAA
GATAAGGTGCAAATTTACACTTGGAGGGATGCTACACTTCGAGAGCTGACAATCCCGgtatgaaggatttaatttgttctcatttttactacatcggctttcctatgttcatgcgattgtttgtcacagtcaaagctacaagcattttatgcttgtactgtttgcagGTAGGAATTCACACTTTCGCATTCACTCTCCCA
AATGTTCTTTGTTGACATCGTTAAAAAACGCTTCATTACGTGCAAAAAAAATGCTTGTGCAATGATAGATGCGTAACATTTGATATTTAATAGCCTACTTAATGGCGTATGCCTTGATGATTGTCATTTGACAAAAGAGTTTCAATACATGAAAAATCTATGAAAGAGAATGTGGACTAACCAAATAAAAAAATGCTAAT
TTTTTAGTAGGAATTCTCAAGCCTAGGGGATTTGTAGTAAAATTCAGAGACAAAGCATTGCCAAAATCTCTTGGAGCATGATTGGCGCTAAAGATCATTTTTAGAAGCTGTTCTTAGAGAATTATCCTTTATTGGCACTCTCAAGCCCGAGGGCTTTGTAGTAAAGTTAATGGTAAAGAATTACCATACTAAATCCATTG
GGATCTCTTTCCCTAAATTCCCTAGTGTGAGAATCTGGTGAGAGTGTTTCCATAATATTTCCCTTCATGATATATTTTCTTCTTATTTATATGTTTGCAGTATACAATCCAAGTATTGTTTACTTTTTGTCAAAAGAATTCGAATATATCTATTCAGAATTTTCAATCAAAACCACAAAATGCCTTGCCATTGTTTAGAA
GGTTTGGCACTTATCATGATTTCATCCAATTAGACATCCCGCAGAATGTAAATTACTTCTCTTCTTAAGTAACC