NA ----> NA
Intron 1 GTCTGTAAAA ... ACTATTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 50 | 3 | 3 | 3 |
| A2 | -1 | 0 | 0 | 0 |
| A3 | 40 | 3 | 3 | 1 |
| A4 | 60 | 1 | 1 | 2 |
| A5 | 33.33 | 1 | 1 | 0 |
| A6 | 45.45 | 12 | 11 | 9 |
| A7 | 44 | 7 | 5 | 6 |
| A8 | 46.67 | 16 | 15 | 13 |
| A9 | 43.59 | 11 | 9 | 8 |
| A10 | 41.18 | 10 | 7 | 7 |
>TRINITY_DN36729_c0_g2_i2 from sample A7 / Example spliced isoformGGCTTACTGAGAAACATTGTAGCAAAGTCCGAGAGTTAGAAGAGGGGCGACCTGCTTCTTATGGGGGAGTCCGACCATTAAATGTCCAAACTGTTGAGCCAAAGGAGAGGACACACTGCCATATTGAAGGTTACACTCACCAAGGGGGGCGTTGGCTTCATTCTCTCTATACCGCTGGTTATAGTTGCCAAAGACTGATA
TAATATTGATTATTTTAACTGCTGGGAGTATTTACTGTTGGTTTTCTATTTTCCAAACCTCATAACAGTGAATTCGTGGGGCTGTTTGGAGCCTGAGATAATTGTGGAGGGTGTATTACCTCCCCGGAGGAATTATTTCTTATGTGAAGACGGCGCATTCCTTCTTGGGAGAGGACGCATTCATTGTTGGAGAACAAATA
AATCATTGGGACCGAGTTTGCTGCCTTTGCCTTACTCTAAATGATTGTTGGGAGCAGATTTTCCTTGGCTGGGCGCAATCTTCACTTTTCCCTAATTGTACTTGGTTATCTACAGTGACTGGAAGTGCCAAAGAGATGACATAGTTGATATTCATAGACCTGTCACACCACCTTTCACCTACAGCAAATTTCTTTAAGAA
TACAAATTTCAGACCAGCAAATGAAGGTCTACTACAGCAGAATTGCTTTAGCCTCTGAAGATCTTTAAAGGAGATGAATTGGAGGCCACAAAGGAGTAGATCTAGGGTTCAAACTTGCCTACAAAATTCTGAACGTGACAATCAGCTTCTACTTCAGATTTGTAATTCTGTTTTCCTTGCAAATTCAGAGGCCTGTTACA
GCAGATTTCAAATAACGGAAATTCCAGCAAGGAAACAAGGTATGAGTAGTATAGACCAATGATCCTAAAACTGATTTCTGCAGGCTGCAAGCAAACTTACATTCCAAATCTACTTAAGCAAAATTTAAAATGGTTTAAAATGAATTTTTATGGTCAGAAAAACTTGAGACTAGTAGGAATTTTTATGGCAAAACCTATGT
AGGAATAAGAAACAGTGATGAACCATTTACTGGCCAATTTAAGCACCACCTGCACTATGAAATCGGGCTTGTGTTATGAATTGGAGTAGAAAACCAAAAGTGTATTATGAATTGATGAAAAAATTGCAAGCAGTGGGGAAGATCTACCAAGTCACTGTCAACATGTGGATATCTAATAAGAATGGAGTTATGTTTGAGGC
CCGAAATTTGACAGCTGAAATCAATATCATAATATTTCTTATGCCAATATGTACATGTTTGCAACAATTCATCTACTCTCTTTGGGGTGTATGTATTTTAGTGATTTGATAATAGCATTCTCAGC
>TRINITY_DN36729_c0_g2_i1 from sample A7 / Example unspliced isoform:GGCTTACTGAGAAACATTGTAGCAAAGTCCGAGAGTTAGAAGAGGGGCGACCTGCTTCTTATGGGGGAGTCCGACCATTAAATGTCCAAACTGTTGAGCCAAAGGAGAGGACACACTGCCATATTGAAGGTTACACTCACCAAGGGGGGCGTTGGCTTCATTCTCTCTATACCGCTGGTTATAGTTGCCAAAGACTGATA
TAATATTGATTATTTTAACTGCTGGGAGTATTTACTGTTGGTTTTCTATTTTCCAAACCTCATAACAGTGAATTCGTGGGGCTGTTTGGAGCCTGAGATAATTGTGGAGGGTGTATTACCTCCCCGGAGGAATTATTTCTTATGTGAAGACGGCGCATTCCTTCTTGGGAGAGGACGCATTCATTGTTGGAGAACAAATA
AATCATTGGGACCGAGTTTGCTGCCTTTGCCTTACTCTAAATGATTGTTGGGAGCAGATTTTCCTTGGCTGGGCGCAATCTTCACTTTTCCCTAATTGTACTTGGTTATCTACAGTGACTGGAAGTGCCAAAGAGATGACATAGTTGATATTCATAGACCTGTCACACCACCTTTCACCTACAGgtctgtaaaaagtact
attgcagCAAATTTCTTTAAGAATACAAATTTCAGACCAGCAAATGAAGGTCTACTACAGCAGAATTGCTTTAGCCTCTGAAGATCTTTAAAGGAGATGAATTGGAGGCCACAAAGGAGTAGATCTAGGGTTCAAACTTGCCTACAAAATTCTGAACGTGACAATCAGCTTCTACTTCAGATTTGTAATTCTGTTTTCCT
TGCAAATTCAGAGGCCTGTTACAGCAGATTTCAAATAACGGAAATTCCAGCAAGGAAACAAGGTATGAGTAGTATAGACCAATGATCCTAAAACTGATTTCTGCAGGCTGCAAGCAAACTTACATTCCAAATCTACTTAAGCAAAATTTAAAATGGTTTAAAATGAATTTTTATGGTCAGAAAAACTTGAGACTAGTAGG
AATTTTTATGGCAAAACCTATGTAGGAATAAGAAACAGTGATGAACCATTTACTGGCCAATTTAAGCACCACCTGCACTATGAAATCGGGCTTGTGTTATGAATTGGAGTAGAAAACCAAAAGTGTATTATGAATTGATGAAAAAATTGCAAGCAGTGGGGAAGATCTACCAAGTCACTGTCAACATGTGGATATCTAAT
AAGAATGGAGTTATGTTTGAGGCCCGAAATTTGACAGCTGAAATCAATATCATAATATTTCTTATGCCAATATGTACATGTTTGCAACAATTCATCTACTCTCTTTGGGGTGTATGTATTTTAGTGATTTGATAATAGCATTCTCAGC